Contig-U12697-1
Contig ID Contig-U12697-1
Contig update 2002.12.18
Contig sequence
>Contig-U12697-1 (Contig-U12697-1Q) /CSM_Contig/Contig-U12697-1Q.Seq.d
NNNNNNNNNNCAAATATCGCTCGTGGTACCTATATAAATTATCAAACTTC
CCCCTTGTTTCGAAGAGATTGATCAATTACTTTGCTCAAAGACTTTACAT
CAAATCGTTTTCACTATCTTACAAAACCAATTGGTGGATGGTGCAAAATC
AACTGATACCATATTCACCCATTGTTTACACGCTTTGGAGTTATGTATCA
ATCAAACTTTGGCCAATCCAGAGTTGAAGGCTGAAGCTATCAGCTCTGCA
ATCGTGGTTCAAACACCTTCAAAACAAACACCATTGGTTAAACCATCTTC
TGCAACTCCACCAACTTCAATTCCAAAGAATTATTCAGAGATTGAATTAC
CATCTAAAAAGAATATCTTTTTGAATGCTTTTGTCGATGTTCCAGTTTCA
GAGCAAAAGAGATTCTCTTTGATCATTTTATTGGTAAAACTTACAACCTC
TCAACAAATCAATGCCGATCATAAACAACAAATTCAAAATATCATTAACA
TCTTGATGGAGAATAATGTCAATTGTAAACAAACCATTGAAAATTATTGG
GCTGCAATTAAAGCAAAGAAACAACCACAATCTGCACGTAAAGAGGATCC
AGAGGAAGAAAAGAAACGTTTAGCTCGTGCTAGACAAGCAGCGATTTTAG
CTCAAATGAAAACTCAACAATCTGCTTTCAAATTTGAAGATGGTGAAGAT
GATGAAGATTACGAAGAGATTAGAAGATGCTAGCACAAAAGGTTCATCAG
CTAGCGCAGCACAAAAG

Gap no gap
Contig length 767
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 759711
End point 760471
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U12697
List of clone(s)

est1=AHF794Z,1,758
Translated Amino Acid sequence
xxxqislvvpi*IIKLPPCFEEIDQLLCSKTLHQIVFTILQNQLVDGAKSTDTIFTHCLH
ALELCINQTLANPELKAEAISSAIVVQTPSKQTPLVKPSSATPPTSIPKNYSEIELPSKK
NIFLNAFVDVPVSEQKRFSLIILLVKLTTSQQINADHKQQIQNIINILMENNVNCKQTIE
NYWAAIKAKKQPQSARKEDPEEEKKRLARARQAAILAQMKTQQSAFKFEDGEDDEDYEEI
RRC*hkrfis*rstk


Translated Amino Acid sequence (All Frames)
Frame A:
xxxxniargtyinyqtsplfrrd*sitllkdftsnrfhyltkpiggwckin*yhihplft
rfgvmyqsnfgqsrveg*syqlcnrgsntfktntig*tifcnstnfnskelfrd*iti*k
eylfecfcrcssfrakeilfdhfigktynlstnqcrs*ttnskyh*hldge*cql*tnh*
kllgcn*sketttict*rgsrgrketfssc*tssdfssnensticfqi*rw*r**rlrrd
*kmlaqkvhqlaqhk


Frame B:
xxxqislvvpi*IIKLPPCFEEIDQLLCSKTLHQIVFTILQNQLVDGAKSTDTIFTHCLH
ALELCINQTLANPELKAEAISSAIVVQTPSKQTPLVKPSSATPPTSIPKNYSEIELPSKK
NIFLNAFVDVPVSEQKRFSLIILLVKLTTSQQINADHKQQIQNIINILMENNVNCKQTIE
NYWAAIKAKKQPQSARKEDPEEEKKRLARARQAAILAQMKTQQSAFKFEDGEDDEDYEEI
RRC*hkrfis*rstk


Frame C:
xxxkyrswylyklsnfplvskrlinyfaqrlyiksfslsyktnwwmvqnqlipyspivyt
lwsyvsiklwpiqs*rlklsalqswfkhlqnkhhwlnhllqlhqlqfqriiqrlnyhlkr
isf*mllsmfqfqskrdsl*sfyw*nlqplnksmpiinnkfkislts*wrimsivnkplk
iiglqlkqrnnhnlhvkriqrkkrnv*lvldkqrf*lk*klnnllsnlkmvkmmkitkrl
edastkgssasaaqk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12697-1 (Contig-U12697-1Q)
/CSM_Contig/Contig-U12697-1Q.Seq.d
(767 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12697-1 (Contig-U12697-1Q) /CSM_Contig/Conti... 1501 0.0
Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U05920-1 (Contig-U05920-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11176-1 (Contig-U11176-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U09320-1 (Contig-U09320-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U01835-1 (Contig-U01835-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U14698-1 (Contig-U14698-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U11109-1 (Contig-U11109-1Q) /CSM_Contig/Conti... 34 0.21

>Contig-U12697-1 (Contig-U12697-1Q) /CSM_Contig/Contig-U12697-1Q.Seq.d
Length = 767

Score = 1501 bits (757), Expect = 0.0
Identities = 757/757 (100%)
Strand = Plus / Plus


Query: 11 caaatatcgctcgtggtacctatataaattatcaaacttcccccttgtttcgaagagatt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 caaatatcgctcgtggtacctatataaattatcaaacttcccccttgtttcgaagagatt 70


Query: 71 gatcaattactttgctcaaagactttacatcaaatcgttttcactatcttacaaaaccaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gatcaattactttgctcaaagactttacatcaaatcgttttcactatcttacaaaaccaa 130


Query: 131 ttggtggatggtgcaaaatcaactgataccatattcacccattgtttacacgctttggag 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttggtggatggtgcaaaatcaactgataccatattcacccattgtttacacgctttggag 190


Query: 191 ttatgtatcaatcaaactttggccaatccagagttgaaggctgaagctatcagctctgca 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttatgtatcaatcaaactttggccaatccagagttgaaggctgaagctatcagctctgca 250


Query: 251 atcgtggttcaaacaccttcaaaacaaacaccattggttaaaccatcttctgcaactcca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atcgtggttcaaacaccttcaaaacaaacaccattggttaaaccatcttctgcaactcca 310


Query: 311 ccaacttcaattccaaagaattattcagagattgaattaccatctaaaaagaatatcttt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccaacttcaattccaaagaattattcagagattgaattaccatctaaaaagaatatcttt 370


Query: 371 ttgaatgcttttgtcgatgttccagtttcagagcaaaagagattctctttgatcatttta 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttgaatgcttttgtcgatgttccagtttcagagcaaaagagattctctttgatcatttta 430


Query: 431 ttggtaaaacttacaacctctcaacaaatcaatgccgatcataaacaacaaattcaaaat 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttggtaaaacttacaacctctcaacaaatcaatgccgatcataaacaacaaattcaaaat 490


Query: 491 atcattaacatcttgatggagaataatgtcaattgtaaacaaaccattgaaaattattgg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atcattaacatcttgatggagaataatgtcaattgtaaacaaaccattgaaaattattgg 550


Query: 551 gctgcaattaaagcaaagaaacaaccacaatctgcacgtaaagaggatccagaggaagaa 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gctgcaattaaagcaaagaaacaaccacaatctgcacgtaaagaggatccagaggaagaa 610


Query: 611 aagaaacgtttagctcgtgctagacaagcagcgattttagctcaaatgaaaactcaacaa 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aagaaacgtttagctcgtgctagacaagcagcgattttagctcaaatgaaaactcaacaa 670


Query: 671 tctgctttcaaatttgaagatggtgaagatgatgaagattacgaagagattagaagatgc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tctgctttcaaatttgaagatggtgaagatgatgaagattacgaagagattagaagatgc 730


Query: 731 tagcacaaaaggttcatcagctagcgcagcacaaaag 767
|||||||||||||||||||||||||||||||||||||
Sbjct: 731 tagcacaaaaggttcatcagctagcgcagcacaaaag 767


>Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Contig-U14822-1Q.Seq.d
Length = 1012

Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 685 tgaagatggtgaagatgatgaagat 709
|||||||| ||||||||||||||||
Sbjct: 769 tgaagatgatgaagatgatgaagat 745


>Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Contig-U12316-1Q.Seq.d
Length = 1248

Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 685 tgaagatggtgaagatgatgaagat 709
|||||||| ||||||||||||||||
Sbjct: 1013 tgaagatgatgaagatgatgaagat 1037


Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 685 tgaagatggtgaagatgatgaaga 708
|||||||| |||||||||||||||
Sbjct: 1022 tgaagatgatgaagatgatgaaga 1045


Score = 34.2 bits (17), Expect = 0.21
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 689 gatggtgaagatgatgaagat 709
|||| ||||||||||||||||
Sbjct: 1008 gatgatgaagatgatgaagat 1028


Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 695 gaagatgatgaagat 709
|||||||||||||||
Sbjct: 1068 gaagatgatgaagat 1082


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,232
Number of Sequences: 6905
Number of extensions: 10232
Number of successful extensions: 1182
Number of sequences better than 10.0: 175
length of query: 767
length of database: 5,674,871
effective HSP length: 16
effective length of query: 751
effective length of database: 5,564,391
effective search space: 4178857641
effective search space used: 4178857641
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA
Query= Contig-U12697-1 (Contig-U12697-1Q) /CSM_Contig/Contig-U12697-1Q.Seq.d
(767 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ351356) Dictyostelium discoideum cDNA clone:dda42l23, 3' ... 1501 0.0 1
(AC117894) Rattus norvegicus clone CH230-318L13, *** SEQUENC... 50 0.074 2
(AC111859) Rattus norvegicus clone CH230-203M15, *** SEQUENC... 50 0.088 2
(CR380957) Candida glabrata strain CBS138 chromosome K compl... 50 0.12 1
(AE001411) Plasmodium falciparum 3D7 chromosome 2 section 48... 50 0.12 1
(AC106269) Rattus norvegicus clone CH230-98I17, *** SEQUENCI... 50 0.12 1
(BZ294472) CG0919.f1 Candida glabrata Random Genomic Library... 50 0.12 1
(BU494840) PfESToab68d10.y1 Plasmodium falciparum 3D7 asexua... 50 0.12 1
(AL132902) Caenorhabditis elegans YAC Y71A12B. 42 0.17 5
(AC178754) Strongylocentrotus purpuratus clone R3-16K15, WOR... 34 0.28 2
(AM650125) Entamoeba moshkovskii FIC GSS, clone mosh073c04.q1k. 40 0.30 2
(AM652094) Entamoeba moshkovskii FIC GSS, clone mosh112a06.p1k. 40 0.31 2
(AM647354) Entamoeba moshkovskii FIC GSS, clone mosh050a09.q1k. 40 0.34 2
(DV135321) CV03111A1C12.f1 CV03-normalized library Euphorbia... 38 0.45 3
(Z69794) Caenorhabditis elegans Cosmid R03G8. 48 0.49 1
(EJ644860) 1093012258574 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.49 1
(AL408041) T7 end of clone AV0AA006B12 of library AV0AA from... 48 0.49 1
(ES439479) CTYF07A15F Citrus unshiu young fruit Citrus unshi... 48 0.49 1
(ES438839) CTYF04M06F Citrus unshiu young fruit Citrus unshi... 48 0.49 1
(ES438703) CTYF04E14F Citrus unshiu young fruit Citrus unshi... 48 0.49 1
(DY257672) KN0AAK3DC06FM1 AbsCFruit Citrus sinensis cDNA 5',... 48 0.49 1
(DY257627) KN0AAK3CC06FM1 AbsCFruit Citrus sinensis cDNA 5',... 48 0.49 1
(DV141858) CV03129B1B07.f1 CV03-normalized library Euphorbia... 48 0.49 1
(DV128394) CV03050B2G02.f1 CV03-normalized library Euphorbia... 48 0.49 1
(DR909645) USDA-FP_17773 Citrus sinensis phloem Citrus sinen... 48 0.49 1
(DR908708) USDA-FP_16836 Citrus sinensis phloem Citrus sinen... 48 0.49 1
(DR908470) USDA-FP_16598 Citrus sinensis phloem Citrus sinen... 48 0.49 1
(DN618864) UCRCS11_03C07_r Parent Washington Navel Orange Sc... 48 0.49 1
(DN618863) UCRCS11_03C07_f Parent Washington Navel Orange Sc... 48 0.49 1
(AM599531) Paracentrotus lividus EST, clone MPMGp1174N0969Q,... 48 0.49 1
(AM560692) Paracentrotus lividus EST, clone MPMGp1172B0472Q,... 48 0.49 1
(CX298731) C06014H09SK RindPdig24 Citrus clementina cDNA clo... 48 0.49 1
(CX298672) C06014C08SK RindPdig24 Citrus clementina cDNA clo... 48 0.49 1
(CX291703) C04002D12SK FlavFr1 Citrus clementina cDNA clone ... 48 0.49 1
(CX077114) UCRCS08_54E04_g Parent Washington Navel Orange Ca... 48 0.49 1
(CX077113) UCRCS08_54E04_b Parent Washington Navel Orange Ca... 48 0.49 1
(CX045838) UCRCS07_4C08_g Parent Washington Navel Orange Thr... 48 0.49 1
(CX045837) UCRCS07_4C08_b Parent Washington Navel Orange Thr... 48 0.49 1
(CN183171) UCRCS04_0003J19_f Ruby Orange Developing Flower c... 48 0.49 1
(CN183168) UCRCS04_0003J17_r Ruby Orange Developing Flower c... 48 0.49 1
(CK939617) CGF1004748_A12 Developing fruit flavedo at 165 DA... 48 0.49 1
(CK935110) CGF1004177_H01 Developing fruit peel at 38 DAFB C... 48 0.49 1
(CK739909) USDA-FP_6301 Ridge pineapple sweet orange entire ... 48 0.49 1
(CF835574) UCRCS03_01I03_r Washington Navel Orange Shoot Mer... 48 0.49 1
(CF832058) UCRCS02_01D23_r Ruby Orange Ovary at Anthesis cDN... 48 0.49 1
(CB304901) FLAVEDO0002_IaR_G07 Flavedo Mature Citrus sinensi... 48 0.49 1
(CB291571) UCRCS01_03ae09_g1 Washington Navel orange cold ac... 48 0.49 1
(CB291570) UCRCS01_03ae09_b1 Washington Navel orange cold ac... 48 0.49 1
(BM274287) PfESToaa43e04.y1 Plasmodium falciparum 3D7 gameto... 48 0.49 1
(BJ565232) Ipomoea nil cDNA clone:jm7j22, 5' end, single read. 48 0.49 1
(FG599996) PF_T3_07R_G02_25JUL2003_004 Opium poppy root cDNA... 48 0.49 1
(EY891320) TS27-C2-300-060-C10-CT.F Sunki mandarin bark, gre... 48 0.49 1
(EY890113) TS27-C2-300-072-F02-CT.F Sunki mandarin bark, gre... 48 0.49 1
(EY875441) CL06-C4-501-034-H02-CT.F Rangpur lime root, plant... 48 0.49 1
(EY843497) CA26-C1-002-015-F04-CT.F Sour orange leaf, field ... 48 0.49 1
(EY801366) CR05-C3-701-101-H06-CT.F Mandarin fruit, developm... 48 0.49 1
(EY757363) CS13-C1-001-022-E03-CT.F Sweet orange leaf, field... 48 0.49 1
(EY720764) CS00-C3-703-014-A03-CT.F Sweet orange fruit, deve... 48 0.49 1
(EY694420) CS00-C3-700-025-D01-CT.F Sweet orange fruit, deve... 48 0.49 1
(EY669725) CS00-C1-102-051-F09-CT.F Sweet orange leaf, infec... 48 0.49 1
(EX449554) Volcani_8_09_G10 Volcani08 Citrus reticulata x Ci... 48 0.49 1
(AM478342) Vitis vinifera contig VV78X097227.4, whole genome... 44 0.90 2
(CU855879) Zebrafish DNA sequence from clone CH73-159H2 in l... 40 1.3 3
(CU896662) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 1.4 3
(AL732436) Zebrafish DNA sequence from clone BUSM1-21A14 in ... 40 1.7 3
(AY781284) Human rotavirus C strain V460 nonstructural prote... 46 1.9 1
(AY781283) Human rotavirus C strain V966 nonstructural prote... 46 1.9 1
(AY770979) Human rotavirus C strain v508 nonstructural prote... 46 1.9 1
(AJ132205) Human rotavirus (group C / strain Bristol) NSP2 g... 46 1.9 1
(AC136139) Medicago truncatula clone mth2-22c2, complete seq... 46 1.9 1
(DL005655) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 46 1.9 1
(CS459580) Sequence 61 from Patent WO2006117596. 46 1.9 1
(AP007215) Homo sapiens genomic DNA, chromosome 11 clone:CMF... 46 1.9 1
(AP006345) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 46 1.9 1
(AC137082) Danio rerio clone xx-166n12, WORKING DRAFT SEQUEN... 46 1.9 1
(AC109738) Rattus norvegicus clone CH230-313H8, *** SEQUENCI... 46 1.9 1
(AC109704) Rattus norvegicus clone CH230-210K20, *** SEQUENC... 46 1.9 1
(AC097722) Homo sapiens chromosome UNK clone RP11-186D19, WO... 46 1.9 1
(AC097075) Rattus norvegicus clone CH230-153N20, *** SEQUENC... 46 1.9 1
(CU463163) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.9 1
(AC203132) Ornithorhynchus anatinus clone OA_Bb-187K2, WORKI... 46 1.9 1
(CT436562) Sus scrofa genomic clone CH242-313E11, genomic su... 46 1.9 1
(CF696606) CCAHD75TR C.neoformans strain JEC21 Cryptococcus ... 46 1.9 1
(CA855018) PfESToac45d03.y1 Plasmodium falciparum 3D7 gameto... 46 1.9 1
(EY699613) CS00-C3-700-085-C06-CT.F Sweet orange fruit, deve... 46 1.9 1
(EX448274) Volcani_8_17_D11 Volcani08 Citrus reticulata x Ci... 46 1.9 1
(AC138072) Homo sapiens chromosome 8 clone RP11-139L10 map 8... 42 3.3 3
(AM480575) Vitis vinifera contig VV78X221165.3, whole genome... 40 3.3 2
(AC096215) Rattus norvegicus clone CH230-23I17, *** SEQUENCI... 32 3.6 2
(AC141382) Rattus norvegicus clone CH230-270P9, WORKING DRAF... 32 3.8 2
(DX516695) 763_5_14177267_16654_43716_062 Arachis hypogaea m... 42 4.2 2
(AP010348) Lotus japonicus genomic DNA, chromosome 4, clone:... 36 4.5 5
(FH912425) CHO_ONF079xa05f1.ab1 CHO_ONF Nicotiana tabacum ge... 36 4.7 2
(BW640708) Dugesia ryukyuensis mRNA, clone: Dr_sW_019_B08, 5... 34 4.9 2
(AC176368) Strongylocentrotus purpuratus clone R3-3048H9, WO... 42 5.4 4
(DT751009) EST1184858 Aquilegia cDNA library Aquilegia formo... 38 5.5 2
(BX936411) Mouse DNA sequence from clone RP24-62G2 on chromo... 38 5.8 2
(AC188813) Gallus gallus BAC clone CH261-87N24 from chromoso... 44 7.6 1
(BV421142) S229P6497RB9.T0 GermanShepherd Canis familiaris S... 44 7.6 1
(AC115811) Mus musculus chromosome 5, clone RP23-429M21, com... 44 7.6 1

>(BJ351356) Dictyostelium discoideum cDNA clone:dda42l23, 3' end,
single read.
Length = 758

Score = 1501 bits (757), Expect = 0.0
Identities = 757/757 (100%)
Strand = Plus / Minus


Query: 11 caaatatcgctcgtggtacctatataaattatcaaacttcccccttgtttcgaagagatt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 caaatatcgctcgtggtacctatataaattatcaaacttcccccttgtttcgaagagatt 699


Query: 71 gatcaattactttgctcaaagactttacatcaaatcgttttcactatcttacaaaaccaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gatcaattactttgctcaaagactttacatcaaatcgttttcactatcttacaaaaccaa 639


Query: 131 ttggtggatggtgcaaaatcaactgataccatattcacccattgtttacacgctttggag 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttggtggatggtgcaaaatcaactgataccatattcacccattgtttacacgctttggag 579


Query: 191 ttatgtatcaatcaaactttggccaatccagagttgaaggctgaagctatcagctctgca 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttatgtatcaatcaaactttggccaatccagagttgaaggctgaagctatcagctctgca 519


Query: 251 atcgtggttcaaacaccttcaaaacaaacaccattggttaaaccatcttctgcaactcca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atcgtggttcaaacaccttcaaaacaaacaccattggttaaaccatcttctgcaactcca 459


Query: 311 ccaacttcaattccaaagaattattcagagattgaattaccatctaaaaagaatatcttt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ccaacttcaattccaaagaattattcagagattgaattaccatctaaaaagaatatcttt 399


Query: 371 ttgaatgcttttgtcgatgttccagtttcagagcaaaagagattctctttgatcatttta 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttgaatgcttttgtcgatgttccagtttcagagcaaaagagattctctttgatcatttta 339


Query: 431 ttggtaaaacttacaacctctcaacaaatcaatgccgatcataaacaacaaattcaaaat 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttggtaaaacttacaacctctcaacaaatcaatgccgatcataaacaacaaattcaaaat 279


Query: 491 atcattaacatcttgatggagaataatgtcaattgtaaacaaaccattgaaaattattgg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atcattaacatcttgatggagaataatgtcaattgtaaacaaaccattgaaaattattgg 219


Query: 551 gctgcaattaaagcaaagaaacaaccacaatctgcacgtaaagaggatccagaggaagaa 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gctgcaattaaagcaaagaaacaaccacaatctgcacgtaaagaggatccagaggaagaa 159


Query: 611 aagaaacgtttagctcgtgctagacaagcagcgattttagctcaaatgaaaactcaacaa 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aagaaacgtttagctcgtgctagacaagcagcgattttagctcaaatgaaaactcaacaa 99


Query: 671 tctgctttcaaatttgaagatggtgaagatgatgaagattacgaagagattagaagatgc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 tctgctttcaaatttgaagatggtgaagatgatgaagattacgaagagattagaagatgc 39


Query: 731 tagcacaaaaggttcatcagctagcgcagcacaaaag 767
|||||||||||||||||||||||||||||||||||||
Sbjct: 38 tagcacaaaaggttcatcagctagcgcagcacaaaag 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 917,857,287
Number of extensions: 55567520
Number of successful extensions: 4338950
Number of sequences better than 10.0: 314
Length of query: 767
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 743
Effective length of database: 97,308,875,965
Effective search space: 72300494841995
Effective search space used: 72300494841995
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 4
Homology vs Protein
Query= Contig-U12697-1 (Contig-U12697-1Q) /CSM_Contig/Contig-U12697-1Q.Seq.d
(767 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

Y09321_1(Y09321|pid:none) H.sapiens TAFII105 mRNA, partial. 37 0.53
BC169304_1(BC169304|pid:none) Synthetic construct Homo sapiens c... 37 0.53
AY888049_1(AY888049|pid:none) Homo sapiens TAFII105-E9 mRNA, com... 37 0.53
(Q92750) RecName: Full=Transcription initiation factor TFIID sub... 37 0.53
(Q5JRB0) RecName: Full=Melanoma inhibitory activity protein 3; A... 36 1.5
BC172892_1(BC172892|pid:none) Synthetic construct Homo sapiens c... 36 1.5
AL592148_7(AL592148|pid:none) Human DNA sequence from clone RP11... 36 1.5
AE014188_180(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.0
AM920435_1207(AM920435|pid:none) Penicillium chrysogenum Wiscons... 34 4.5
CR936503_1721(CR936503|pid:none) Lactobacillus sakei strain 23K ... 34 4.5
AK296712_1(AK296712|pid:none) Homo sapiens cDNA FLJ56455 complet... 34 4.5
A41622(A41622;A41214;B41214;B41215) protein-tyrosine-phosphatase... 34 5.8
CP000563_4181(CP000563|pid:none) Shewanella baltica OS155, compl... 34 5.8
CP000753_95(CP000753|pid:none) Shewanella baltica OS185, complet... 34 5.8
EF133513_1(EF133513|pid:none) Sus Scrofa TATA binding protein as... 34 5.8
M80539_1(M80539|pid:none) D.melanogaster receptor-linked protein... 34 5.8
(Q46J58) RecName: Full=ATP synthase gamma chain; AltName: Full=A... 33 7.6
CP001114_571(CP001114|pid:none) Deinococcus deserti VCD115, comp... 33 7.6
CP000393_1700(CP000393|pid:none) Trichodesmium erythraeum IMS101... 33 7.6
AE014297_4546(AE014297|pid:none) Drosophila melanogaster chromos... 33 9.9
DQ471525_1(DQ471525|pid:none) Drosophila anceps NADH dehydrogena... 33 9.9

>Y09321_1(Y09321|pid:none) H.sapiens TAFII105 mRNA, partial.
Length = 801

Score = 37.4 bits (85), Expect = 0.53
Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Frame = +2

Query: 224 LKAEAISSAIVVQTPSKQTPLV---KPSSATPPTSIPKNYSEIELPSKKNIFLNAFVDVP 394
+++ A+ +++V TP K V KPSS +S P N ++ + + +N +
Sbjct: 132 VQSVAVPTSVVTVTPGKPLNTVTTLKPSSLGA-SSTPSNEPNLKAENSAAVQINLSPTML 190

Query: 395 VSEQKRFSLIILLVKLTTSQQINADHKQQIQNIINILMENNVNCKQTIENYWAAIKAKKQ 574
+ +K + + +L+KL S + + Q ++ ++ L++ + ++ + +K+ Q
Sbjct: 191 ENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEAEEFTRKLYVELKSSPQ 250

Query: 575 P 577
P
Sbjct: 251 P 251

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,182,925,878
Number of extensions: 23179888
Number of successful extensions: 57713
Number of sequences better than 10.0: 21
Number of HSP's gapped: 57590
Number of HSP's successfully gapped: 21
Length of query: 255
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 129
Effective length of database: 643,374,430
Effective search space: 82995301470
Effective search space used: 82995301470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.61 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for Contig-U12697-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0