Contig-U12697-1 |
Contig ID |
Contig-U12697-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
767 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
759711 |
End point |
760471 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U12697 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 2 |
Homology vs DNA |
Query= Contig-U12697-1 (Contig-U12697-1Q) /CSM_Contig/Contig-U12697-1Q.Seq.d (767 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ351356) Dictyostelium discoideum cDNA clone:dda42l23, 3' ... 1501 0.0 1 (AC117894) Rattus norvegicus clone CH230-318L13, *** SEQUENC... 50 0.074 2 (AC111859) Rattus norvegicus clone CH230-203M15, *** SEQUENC... 50 0.088 2 (CR380957) Candida glabrata strain CBS138 chromosome K compl... 50 0.12 1 (AE001411) Plasmodium falciparum 3D7 chromosome 2 section 48... 50 0.12 1 (AC106269) Rattus norvegicus clone CH230-98I17, *** SEQUENCI... 50 0.12 1 (BZ294472) CG0919.f1 Candida glabrata Random Genomic Library... 50 0.12 1 (BU494840) PfESToab68d10.y1 Plasmodium falciparum 3D7 asexua... 50 0.12 1 (AL132902) Caenorhabditis elegans YAC Y71A12B. 42 0.17 5 (AC178754) Strongylocentrotus purpuratus clone R3-16K15, WOR... 34 0.28 2 (AM650125) Entamoeba moshkovskii FIC GSS, clone mosh073c04.q1k. 40 0.30 2 (AM652094) Entamoeba moshkovskii FIC GSS, clone mosh112a06.p1k. 40 0.31 2 (AM647354) Entamoeba moshkovskii FIC GSS, clone mosh050a09.q1k. 40 0.34 2 (DV135321) CV03111A1C12.f1 CV03-normalized library Euphorbia... 38 0.45 3 (Z69794) Caenorhabditis elegans Cosmid R03G8. 48 0.49 1 (EJ644860) 1093012258574 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.49 1 (AL408041) T7 end of clone AV0AA006B12 of library AV0AA from... 48 0.49 1 (ES439479) CTYF07A15F Citrus unshiu young fruit Citrus unshi... 48 0.49 1 (ES438839) CTYF04M06F Citrus unshiu young fruit Citrus unshi... 48 0.49 1 (ES438703) CTYF04E14F Citrus unshiu young fruit Citrus unshi... 48 0.49 1 (DY257672) KN0AAK3DC06FM1 AbsCFruit Citrus sinensis cDNA 5',... 48 0.49 1 (DY257627) KN0AAK3CC06FM1 AbsCFruit Citrus sinensis cDNA 5',... 48 0.49 1 (DV141858) CV03129B1B07.f1 CV03-normalized library Euphorbia... 48 0.49 1 (DV128394) CV03050B2G02.f1 CV03-normalized library Euphorbia... 48 0.49 1 (DR909645) USDA-FP_17773 Citrus sinensis phloem Citrus sinen... 48 0.49 1 (DR908708) USDA-FP_16836 Citrus sinensis phloem Citrus sinen... 48 0.49 1 (DR908470) USDA-FP_16598 Citrus sinensis phloem Citrus sinen... 48 0.49 1 (DN618864) UCRCS11_03C07_r Parent Washington Navel Orange Sc... 48 0.49 1 (DN618863) UCRCS11_03C07_f Parent Washington Navel Orange Sc... 48 0.49 1 (AM599531) Paracentrotus lividus EST, clone MPMGp1174N0969Q,... 48 0.49 1 (AM560692) Paracentrotus lividus EST, clone MPMGp1172B0472Q,... 48 0.49 1 (CX298731) C06014H09SK RindPdig24 Citrus clementina cDNA clo... 48 0.49 1 (CX298672) C06014C08SK RindPdig24 Citrus clementina cDNA clo... 48 0.49 1 (CX291703) C04002D12SK FlavFr1 Citrus clementina cDNA clone ... 48 0.49 1 (CX077114) UCRCS08_54E04_g Parent Washington Navel Orange Ca... 48 0.49 1 (CX077113) UCRCS08_54E04_b Parent Washington Navel Orange Ca... 48 0.49 1 (CX045838) UCRCS07_4C08_g Parent Washington Navel Orange Thr... 48 0.49 1 (CX045837) UCRCS07_4C08_b Parent Washington Navel Orange Thr... 48 0.49 1 (CN183171) UCRCS04_0003J19_f Ruby Orange Developing Flower c... 48 0.49 1 (CN183168) UCRCS04_0003J17_r Ruby Orange Developing Flower c... 48 0.49 1 (CK939617) CGF1004748_A12 Developing fruit flavedo at 165 DA... 48 0.49 1 (CK935110) CGF1004177_H01 Developing fruit peel at 38 DAFB C... 48 0.49 1 (CK739909) USDA-FP_6301 Ridge pineapple sweet orange entire ... 48 0.49 1 (CF835574) UCRCS03_01I03_r Washington Navel Orange Shoot Mer... 48 0.49 1 (CF832058) UCRCS02_01D23_r Ruby Orange Ovary at Anthesis cDN... 48 0.49 1 (CB304901) FLAVEDO0002_IaR_G07 Flavedo Mature Citrus sinensi... 48 0.49 1 (CB291571) UCRCS01_03ae09_g1 Washington Navel orange cold ac... 48 0.49 1 (CB291570) UCRCS01_03ae09_b1 Washington Navel orange cold ac... 48 0.49 1 (BM274287) PfESToaa43e04.y1 Plasmodium falciparum 3D7 gameto... 48 0.49 1 (BJ565232) Ipomoea nil cDNA clone:jm7j22, 5' end, single read. 48 0.49 1 (FG599996) PF_T3_07R_G02_25JUL2003_004 Opium poppy root cDNA... 48 0.49 1 (EY891320) TS27-C2-300-060-C10-CT.F Sunki mandarin bark, gre... 48 0.49 1 (EY890113) TS27-C2-300-072-F02-CT.F Sunki mandarin bark, gre... 48 0.49 1 (EY875441) CL06-C4-501-034-H02-CT.F Rangpur lime root, plant... 48 0.49 1 (EY843497) CA26-C1-002-015-F04-CT.F Sour orange leaf, field ... 48 0.49 1 (EY801366) CR05-C3-701-101-H06-CT.F Mandarin fruit, developm... 48 0.49 1 (EY757363) CS13-C1-001-022-E03-CT.F Sweet orange leaf, field... 48 0.49 1 (EY720764) CS00-C3-703-014-A03-CT.F Sweet orange fruit, deve... 48 0.49 1 (EY694420) CS00-C3-700-025-D01-CT.F Sweet orange fruit, deve... 48 0.49 1 (EY669725) CS00-C1-102-051-F09-CT.F Sweet orange leaf, infec... 48 0.49 1 (EX449554) Volcani_8_09_G10 Volcani08 Citrus reticulata x Ci... 48 0.49 1 (AM478342) Vitis vinifera contig VV78X097227.4, whole genome... 44 0.90 2 (CU855879) Zebrafish DNA sequence from clone CH73-159H2 in l... 40 1.3 3 (CU896662) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 1.4 3 (AL732436) Zebrafish DNA sequence from clone BUSM1-21A14 in ... 40 1.7 3 (AY781284) Human rotavirus C strain V460 nonstructural prote... 46 1.9 1 (AY781283) Human rotavirus C strain V966 nonstructural prote... 46 1.9 1 (AY770979) Human rotavirus C strain v508 nonstructural prote... 46 1.9 1 (AJ132205) Human rotavirus (group C / strain Bristol) NSP2 g... 46 1.9 1 (AC136139) Medicago truncatula clone mth2-22c2, complete seq... 46 1.9 1 (DL005655) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 46 1.9 1 (CS459580) Sequence 61 from Patent WO2006117596. 46 1.9 1 (AP007215) Homo sapiens genomic DNA, chromosome 11 clone:CMF... 46 1.9 1 (AP006345) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 46 1.9 1 (AC137082) Danio rerio clone xx-166n12, WORKING DRAFT SEQUEN... 46 1.9 1 (AC109738) Rattus norvegicus clone CH230-313H8, *** SEQUENCI... 46 1.9 1 (AC109704) Rattus norvegicus clone CH230-210K20, *** SEQUENC... 46 1.9 1 (AC097722) Homo sapiens chromosome UNK clone RP11-186D19, WO... 46 1.9 1 (AC097075) Rattus norvegicus clone CH230-153N20, *** SEQUENC... 46 1.9 1 (CU463163) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.9 1 (AC203132) Ornithorhynchus anatinus clone OA_Bb-187K2, WORKI... 46 1.9 1 (CT436562) Sus scrofa genomic clone CH242-313E11, genomic su... 46 1.9 1 (CF696606) CCAHD75TR C.neoformans strain JEC21 Cryptococcus ... 46 1.9 1 (CA855018) PfESToac45d03.y1 Plasmodium falciparum 3D7 gameto... 46 1.9 1 (EY699613) CS00-C3-700-085-C06-CT.F Sweet orange fruit, deve... 46 1.9 1 (EX448274) Volcani_8_17_D11 Volcani08 Citrus reticulata x Ci... 46 1.9 1 (AC138072) Homo sapiens chromosome 8 clone RP11-139L10 map 8... 42 3.3 3 (AM480575) Vitis vinifera contig VV78X221165.3, whole genome... 40 3.3 2 (AC096215) Rattus norvegicus clone CH230-23I17, *** SEQUENCI... 32 3.6 2 (AC141382) Rattus norvegicus clone CH230-270P9, WORKING DRAF... 32 3.8 2 (DX516695) 763_5_14177267_16654_43716_062 Arachis hypogaea m... 42 4.2 2 (AP010348) Lotus japonicus genomic DNA, chromosome 4, clone:... 36 4.5 5 (FH912425) CHO_ONF079xa05f1.ab1 CHO_ONF Nicotiana tabacum ge... 36 4.7 2 (BW640708) Dugesia ryukyuensis mRNA, clone: Dr_sW_019_B08, 5... 34 4.9 2 (AC176368) Strongylocentrotus purpuratus clone R3-3048H9, WO... 42 5.4 4 (DT751009) EST1184858 Aquilegia cDNA library Aquilegia formo... 38 5.5 2 (BX936411) Mouse DNA sequence from clone RP24-62G2 on chromo... 38 5.8 2 (AC188813) Gallus gallus BAC clone CH261-87N24 from chromoso... 44 7.6 1 (BV421142) S229P6497RB9.T0 GermanShepherd Canis familiaris S... 44 7.6 1 (AC115811) Mus musculus chromosome 5, clone RP23-429M21, com... 44 7.6 1
>(BJ351356) Dictyostelium discoideum cDNA clone:dda42l23, 3' end, single read. Length = 758
Score = 1501 bits (757), Expect = 0.0 Identities = 757/757 (100%) Strand = Plus / Minus
Query: 11 caaatatcgctcgtggtacctatataaattatcaaacttcccccttgtttcgaagagatt 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 758 caaatatcgctcgtggtacctatataaattatcaaacttcccccttgtttcgaagagatt 699
Query: 71 gatcaattactttgctcaaagactttacatcaaatcgttttcactatcttacaaaaccaa 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 698 gatcaattactttgctcaaagactttacatcaaatcgttttcactatcttacaaaaccaa 639
Query: 131 ttggtggatggtgcaaaatcaactgataccatattcacccattgtttacacgctttggag 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 638 ttggtggatggtgcaaaatcaactgataccatattcacccattgtttacacgctttggag 579
Query: 191 ttatgtatcaatcaaactttggccaatccagagttgaaggctgaagctatcagctctgca 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 578 ttatgtatcaatcaaactttggccaatccagagttgaaggctgaagctatcagctctgca 519
Query: 251 atcgtggttcaaacaccttcaaaacaaacaccattggttaaaccatcttctgcaactcca 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 518 atcgtggttcaaacaccttcaaaacaaacaccattggttaaaccatcttctgcaactcca 459
Query: 311 ccaacttcaattccaaagaattattcagagattgaattaccatctaaaaagaatatcttt 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 ccaacttcaattccaaagaattattcagagattgaattaccatctaaaaagaatatcttt 399
Query: 371 ttgaatgcttttgtcgatgttccagtttcagagcaaaagagattctctttgatcatttta 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 ttgaatgcttttgtcgatgttccagtttcagagcaaaagagattctctttgatcatttta 339
Query: 431 ttggtaaaacttacaacctctcaacaaatcaatgccgatcataaacaacaaattcaaaat 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 ttggtaaaacttacaacctctcaacaaatcaatgccgatcataaacaacaaattcaaaat 279
Query: 491 atcattaacatcttgatggagaataatgtcaattgtaaacaaaccattgaaaattattgg 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 278 atcattaacatcttgatggagaataatgtcaattgtaaacaaaccattgaaaattattgg 219
Query: 551 gctgcaattaaagcaaagaaacaaccacaatctgcacgtaaagaggatccagaggaagaa 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 218 gctgcaattaaagcaaagaaacaaccacaatctgcacgtaaagaggatccagaggaagaa 159
Query: 611 aagaaacgtttagctcgtgctagacaagcagcgattttagctcaaatgaaaactcaacaa 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 158 aagaaacgtttagctcgtgctagacaagcagcgattttagctcaaatgaaaactcaacaa 99
Query: 671 tctgctttcaaatttgaagatggtgaagatgatgaagattacgaagagattagaagatgc 730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98 tctgctttcaaatttgaagatggtgaagatgatgaagattacgaagagattagaagatgc 39
Query: 731 tagcacaaaaggttcatcagctagcgcagcacaaaag 767 ||||||||||||||||||||||||||||||||||||| Sbjct: 38 tagcacaaaaggttcatcagctagcgcagcacaaaag 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 917,857,287 Number of extensions: 55567520 Number of successful extensions: 4338950 Number of sequences better than 10.0: 314 Length of query: 767 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 743 Effective length of database: 97,308,875,965 Effective search space: 72300494841995 Effective search space used: 72300494841995 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 4 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |