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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12693-1
Contig ID Contig-U12693-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12693-1 (Contig-U12693-1Q) /CSM_Contig/Contig-U12693-1Q.Seq.d
TAGTGCAAATAGTATATGTAATAGTAATAGTAGTAGTAGTAATTCATTAT
TAAAACCTCCAATTATCAATACAACCAATTTAAGTACATCACCAAATTTA
TTAAGTCAATCTTCAACAAGTTTTTTAAATTTACCACCATTAAATCAATC
TTCAACAAATTCATTTTTACCACCACAACACCAACACCACCACCACCATT
CAAATTTATCACAATCATTATCAATTAATAATTTAGCACATCGTTTACCA
ACTTCATTATCATCATCATCACTATCATCAAATAATACCTATGATAGTTT
ACAATTCCAACAACAACAACAACACCATCACCACAATCATAATAATCATC
AAAATTCAAATCAACCATTAGCAACAATTGTACCATCATTTTCAAAATTT
AAAAACTCATTTGATCAATTATTAGAAGAACAAGATTTTAGTAAAAAGAA
AAGAGAAACACTTCAAAAATTATCAAAAGAACAAAAATGGAATTTATTAC
TTCAATATAGAAATTCAACTTTAAATATGTTAAATATGAAAGAGCATTCA
AATAATAGTAATAATAATCAATCAATTAAAAATTCAACTATAATAGCATC
AACAACAACAACAACAACAACAAATGGTGAATCATTGGATGGTTCATCAA
TTCAACAACAAATTACAAAAAAATTCAAATTTTCAATCATCAAGATTTTA
TATTGATAATTTAACAAGTAAAACAGATATTTCATTAGTAAAAGAAGTTC
ATGACTTTTTAAAAGAAAGTGGACCAGAGGTATCAATATTTATTGGTATG
GGTGGTATTGAAAGTTTATTAGGAATTTTACAATTTAATTTAGATAATGC
GCAATTACAATTTGATGAAGAAAAAGTTGGTTATTGTTTATTATGTTTAA
AGATATTGGTTGAATGTACAGCGAAATCAGTGATTACAACTAATAACTCA
TTGAATTTAGTTACCATGTTTTTGACATCTGCAAGTAAATATATCATTGA
TATCATCATTGATATCTATGATGAACTGCTAAGATTACAAGTTATTGGTG
TTAGTGTTGTATTGGATTCATTAATTAATTTTCAAAAAGTGAAAGGATTG
AGTTCACCTTACGTACCATTGGTTGCATTACTAAGAAATCCAATCATTGA
AATGCCAACTAAAACAACGGTTTTCAAAATTATCAACTTTTTAATCTACT
CATTTAGTGTGCTTGAAGAGAGATTCTCTGTAATTTGCTCACTATTAAAA
GTTGGTATTTTAGAAGTGATTGGTATGTTTAGAGCACTACCTCATACATC
ATATAGTTTAAGATTTGAATTGGATCTATTCGAAGAGGTATTGGATAGTG
ATGAGAGTGAATTGGTAAAGAAAATCGGTAGAAAAGAGGTGTTAAAGAGA
ATGAGTAATGAAGATAATGATCTCTCTAAACAATCATCAAAACAATCAAT
GGATTTCGTT
Gap no gap
Contig length 1460
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1558706
End point 1560165
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 6
Link to clone list U12693
List of clone(s) 

est1=CHJ817F,1,686
est2=VHB802F,160,868
est3=VHF325F,318,967
est4=AHF363F,681,1307
est5=AHH867F,739,1047
est6=SHE545F,826,1460
Translated Amino Acid sequence 
vqivyvivivvvvihy*nlqlsiqpi*vhhqiy*vnlqqvf*iyhh*inlqqihfyhhnt
nttttiqiyhnhyqlii*hivyqlhyhhhhyhqiipmivynsnnnnntittiiiiikiqi
nh*qqlyhhfqnlkthliny*knkilvkrkekhfknyqknkngiyyfnieiql*ic*i*k
siqiiviiinqlkiql**HQQQQQQQQMVNHWMVHQFNNKLQKNSNFQSSRFYIDNLTSK
TDISLVKEVHDFLKESGPEVSIFIGMGGIESLLGILQFNLDNAQLQFDEEKVGYCLLCLK
ILVECTAKSVITTNNSLNLVTMFLTSASKYIIDIIIDIYDELLRLQVIGVSVVLDSLINF
QKVKGLSSPYVPLVALLRNPIIEMPTKTTVFKIINFLIYSFSVLEERFSVICSLLKVGIL
EVIGMFRALPHTSYSLRFELDLFEEVLDSDESELVKKIGRKEVLKRMSNEDNDLSKQSSK
QSMDFV
Translated Amino Acid sequence (All Frames) 
Frame A:
*ck*ym********fiiktsnyqynqfkyitkfiksifnkffkfttiksifnkfiftttt
ptppppfkfitiiin**fstsftnfiiiiitiik*yl**ftiptttttpspqs**sskfk
stisnnctiifki*kli*siirrtrf**kekrntskiikrtkmefitsi*kfnfkyvkye
rafk*****sin*kfnynsinnnnnnnkw*iigwfinsttnykkiqifnhqdfilii*qv
kqifh**kkfmtf*kkvdqryqyllvwvvlkvy*efynli*imrnynlmkkklvivyyv*
rywlnvqrnq*lqlith*i*lpcf*hlqvnislisslismmnc*dykllvlvlywih*li
fkk*kd*vhltyhwlhy*eiqslkcqlkqrfsklstf*sthlvclkrdsl*fahy*klvf
*k*lvclehylihhiv*dlnwiyskrywivmrvnw*rksvekrc*re*vmkimislnnhq
nnqwis


Frame B:
sansicnsnssssnsllkppiinttnlstspnllsqsstsflnlpplnqsstnsflppqh
qhhhhhsnlsqslsinnlahrlptslsssslssnntydslqfqqqqqhhhhnhnnhqnsn
qplativpsfskfknsfdqlleeqdfskkkretlqklskeqkwnlllqyrnstlnmlnmk
ehsnnsnnnqsiknstiiastttttttngesldgssiqqqitkkfkfsiikily**fnk*
nryfiskrss*lfkrkwtrginiywygwy*kfirnfti*fr*caiti**rkswllfimfk
dig*myseisdyn**liefsyhvfdick*iyh*yhh*yl**takitsywc*ccigfin*f
skserieftlrtigcitkksnh*nan*nngfqnyqlfnlli*ca*reilcnlltikswyf
rsdwyv*sttsyii*fki*igsirrgig***e*igkenr*krgvkene**r**sl*tiik
tingfr


Frame C:
vqivyvivivvvvihy*nlqlsiqpi*vhhqiy*vnlqqvf*iyhh*inlqqihfyhhnt
nttttiqiyhnhyqlii*hivyqlhyhhhhyhqiipmivynsnnnnntittiiiiikiqi
nh*qqlyhhfqnlkthliny*knkilvkrkekhfknyqknkngiyyfnieiql*ic*i*k
siqiiviiinqlkiql**HQQQQQQQQMVNHWMVHQFNNKLQKNSNFQSSRFYIDNLTSK
TDISLVKEVHDFLKESGPEVSIFIGMGGIESLLGILQFNLDNAQLQFDEEKVGYCLLCLK
ILVECTAKSVITTNNSLNLVTMFLTSASKYIIDIIIDIYDELLRLQVIGVSVVLDSLINF
QKVKGLSSPYVPLVALLRNPIIEMPTKTTVFKIINFLIYSFSVLEERFSVICSLLKVGIL
EVIGMFRALPHTSYSLRFELDLFEEVLDSDESELVKKIGRKEVLKRMSNEDNDLSKQSSK
QSMDFV
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12693-1 (Contig-U12693-1Q)
/CSM_Contig/Contig-U12693-1Q.Seq.d
         (1460 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12693-1 (Contig-U12693-1Q) /CSM_Contig/Conti...  1618  0.0
Contig-U14250-1 (Contig-U14250-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U13571-1 (Contig-U13571-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11767-1 (Contig-U11767-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U05491-1 (Contig-U05491-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U13971-1 (Contig-U13971-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13498-1 (Contig-U13498-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13162-1 (Contig-U13162-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12657-1 (Contig-U12657-1Q) /CSM_Contig/Conti...    42  0.002

>Contig-U12693-1 (Contig-U12693-1Q) /CSM_Contig/Contig-U12693-1Q.Seq.d
          Length = 1460

 Score = 1618 bits (816), Expect = 0.0
 Identities = 830/837 (99%)
 Strand = Plus / Plus

                                                                        
Query: 624  atggtgaatcattggatggttcatcaattcaacaacaaattacnnnnnnnttcaaatttt 683
            |||||||||||||||||||||||||||||||||||||||||||       ||||||||||
Sbjct: 624  atggtgaatcattggatggttcatcaattcaacaacaaattacaaaaaaattcaaatttt 683

                                                                        
Query: 684  caatcatcaagattttatattgataatttaacaagtaaaacagatatttcattagtaaaa 743
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684  caatcatcaagattttatattgataatttaacaagtaaaacagatatttcattagtaaaa 743

                                                                        
Query: 744  gaagttcatgactttttaaaagaaagtggaccagaggtatcaatatttattggtatgggt 803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744  gaagttcatgactttttaaaagaaagtggaccagaggtatcaatatttattggtatgggt 803

                                                                        
Query: 804  ggtattgaaagtttattaggaattttacaatttaatttagataatgcgcaattacaattt 863
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804  ggtattgaaagtttattaggaattttacaatttaatttagataatgcgcaattacaattt 863

                                                                        
Query: 864  gatgaagaaaaagttggttattgtttattatgtttaaagatattggttgaatgtacagcg 923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864  gatgaagaaaaagttggttattgtttattatgtttaaagatattggttgaatgtacagcg 923

                                                                        
Query: 924  aaatcagtgattacaactaataactcattgaatttagttaccatgtttttgacatctgca 983
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  aaatcagtgattacaactaataactcattgaatttagttaccatgtttttgacatctgca 983

                                                                        
Query: 984  agtaaatatatcattgatatcatcattgatatctatgatgaactgctaagattacaagtt 1043
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  agtaaatatatcattgatatcatcattgatatctatgatgaactgctaagattacaagtt 1043

                                                                        
Query: 1044 attggtgttagtgttgtattggattcattaattaattttcaaaaagtgaaaggattgagt 1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 attggtgttagtgttgtattggattcattaattaattttcaaaaagtgaaaggattgagt 1103

                                                                        
Query: 1104 tcaccttacgtaccattggttgcattactaagaaatccaatcattgaaatgccaactaaa 1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 tcaccttacgtaccattggttgcattactaagaaatccaatcattgaaatgccaactaaa 1163

                                                                        
Query: 1164 acaacggttttcaaaattatcaactttttaatctactcatttagtgtgcttgaagagaga 1223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 acaacggttttcaaaattatcaactttttaatctactcatttagtgtgcttgaagagaga 1223

                                                                        
Query: 1224 ttctctgtaatttgctcactattaaaagttggtattttagaagtgattggtatgtttaga 1283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 ttctctgtaatttgctcactattaaaagttggtattttagaagtgattggtatgtttaga 1283

                                                                        
Query: 1284 gcactacctcatacatcatatagtttaagatttgaattggatctattcgaagaggtattg 1343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 gcactacctcatacatcatatagtttaagatttgaattggatctattcgaagaggtattg 1343

                                                                        
Query: 1344 gatagtgatgagagtgaattggtaaagaaaatcggtagaaaagaggtgttaaagagaatg 1403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 gatagtgatgagagtgaattggtaaagaaaatcggtagaaaagaggtgttaaagagaatg 1403

                                                                     
Query: 1404 agtaatgaagataatgatctctctaaacaatcatcaaaacaatcaatggatttcgtt 1460
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 agtaatgaagataatgatctctctaaacaatcatcaaaacaatcaatggatttcgtt 1460


 Score =  545 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Plus

                                                                       
Query: 325 ccatcaccacaatcataataatcatcaaaattcaaatcaaccattagcaacaattgtacc 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatcaccacaatcataataatcatcaaaattcaaatcaaccattagcaacaattgtacc 384

                                                                       
Query: 385 atcattttcaaaatttaaaaactcatttgatcaattattagaagaacaagattttagtaa 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcattttcaaaatttaaaaactcatttgatcaattattagaagaacaagattttagtaa 444

                                                                       
Query: 445 aaagaaaagagaaacacttcaaaaattatcaaaagaacaaaaatggaatttattacttca 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagaaaagagaaacacttcaaaaattatcaaaagaacaaaaatggaatttattacttca 504

                                                                       
Query: 505 atatagaaattcaactttaaatatgttaaatatgaaagagcattcaaataatagtaataa 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atatagaaattcaactttaaatatgttaaatatgaaagagcattcaaataatagtaataa 564

                                              
Query: 565 taatcaatcaattaaaaattcaactataatagcat 599
           |||||||||||||||||||||||||||||||||||
Sbjct: 565 taatcaatcaattaaaaattcaactataatagcat 599


 Score =  333 bits (168), Expect = 3e-91
 Identities = 168/168 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtgcaaatagtatatgtaatagtaatagtagtagtagtaattcattattaaaacctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tagtgcaaatagtatatgtaatagtaatagtagtagtagtaattcattattaaaacctcc 60

                                                                       
Query: 61  aattatcaatacaaccaatttaagtacatcaccaaatttattaagtcaatcttcaacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aattatcaatacaaccaatttaagtacatcaccaaatttattaagtcaatcttcaacaag 120

                                                           
Query: 121 ttttttaaatttaccaccattaaatcaatcttcaacaaattcattttt 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttttaaatttaccaccattaaatcaatcttcaacaaattcattttt 168


 Score =  216 bits (109), Expect = 5e-56
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 199 ttcaaatttatcacaatcattatcaattaataatttagcacatcgtttaccaacttcatt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttcaaatttatcacaatcattatcaattaataatttagcacatcgtttaccaacttcatt 258

                                                            
Query: 259 atcatcatcatcactatcatcaaataatacctatgatagtttacaattc 307
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atcatcatcatcactatcatcaaataatacctatgatagtttacaattc 307


>Contig-U14250-1 (Contig-U14250-1Q) /CSM_Contig/Contig-U14250-1Q.Seq.d
          Length = 1021

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 326 catcaccacaatcataataatca 348
           |||||||||||||||||||||||
Sbjct: 46  catcaccacaatcataataatca 68


>Contig-U13571-1 (Contig-U13571-1Q) /CSM_Contig/Contig-U13571-1Q.Seq.d
          Length = 591

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 259 atcatcatcatcactatcatca 280
           ||||||||||||||||||||||
Sbjct: 316 atcatcatcatcactatcatca 295


 Score = 30.2 bits (15), Expect = 6.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 257 ttatcatcatcatca 271
           |||||||||||||||
Sbjct: 321 ttatcatcatcatca 307


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,768
Number of Sequences: 6905
Number of extensions: 35768
Number of successful extensions: 6781
Number of sequences better than 10.0: 1106
length of query: 1460
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1444
effective length of database: 5,564,391
effective search space: 8034980604
effective search space used: 8034980604
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12693-1 (Contig-U12693-1Q) /CSM_Contig/Contig-U12693-1Q.Seq.d
         (1460 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ333168) Dictyostelium discoideum cDNA clone:dda41n15, 5' ...  1243   0.0    1
(BJ393978) Dictyostelium discoideum cDNA clone:dds33i11, 5' ...  1223   0.0    1
(BJ420959) Dictyostelium discoideum cDNA clone:ddv41b07, 5' ...   577   0.0    4
(BJ418794) Dictyostelium discoideum cDNA clone:ddv34d02, 5' ...   389   0.0    5
(BJ367003) Dictyostelium discoideum cDNA clone:ddc41b06, 5' ...   248   0.0    7
(BJ334478) Dictyostelium discoideum cDNA clone:dda46f18, 5' ...   583   e-162  1
(AC174086) Strongylocentrotus purpuratus clone R3-56D18, WOR...    46   2e-04  2
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    42   0.001  10
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    36   0.003  12
(AC166729) Bos taurus clone CH240-180P18, WORKING DRAFT SEQU...    56   0.004  1
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    42   0.010  2
(AL161577) Arabidopsis thaliana DNA chromosome 4, contig fra...    50   0.010  6
(AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **...    42   0.010  2
(FF573291) TTEFQ51THB Tetrahymena thermophila conjugation cD...    44   0.013  2
(CX576665) TTE00034246 Amplicon Express - Conjugative Form T...    44   0.013  2
(AC116645) Homo sapiens BAC clone RP11-685C12 from 4, comple...    54   0.015  1
(AC108048) Homo sapiens BAC clone RP11-323K3 from 4, complet...    54   0.015  1
(AC093519) Homo sapiens chromosome 16 clone RP11-107C10, com...    54   0.015  1
(AC084259) Homo sapiens chromosome 8 clone RP5-301D7 map 8, ...    54   0.015  1
(AC179164) Strongylocentrotus purpuratus clone R3-4016E3, WO...    54   0.015  1
(AG730243) Macaca fuscata fuscata DNA, clone: MSB2-185N05_F,...    54   0.015  1
(AC177768) Strongylocentrotus purpuratus clone R3-1005G15, W...    42   0.028  7
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.031  17
(AL844509) Plasmodium falciparum chromosome 13.                    42   0.033  2
(AC179061) Strongylocentrotus purpuratus clone R3-4005N21, W...    36   0.038  2
(AC172315) Strongylocentrotus purpuratus clone R3-14G3, WORK...    38   0.038  2
(AC126754) Homo sapiens chromosome 19 clone P1-103340, compl...    42   0.042  2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   0.046  14
(AC131286) Homo sapiens chromosome 8 clone RP11-2D4 map 8, L...    52   0.055  3
(AB150212) Homo sapiens DNA, STS on chromosome X, DXS0688i, ...    52   0.061  1
(AC197158) Pan troglodytes BAC clone CH251-679F7 from chromo...    52   0.061  1
(AC193201) Pan troglodytes BAC clone CH251-688C10 from chrom...    52   0.061  1
(AC192740) Pan troglodytes BAC clone CH251-35A11 from chromo...    52   0.061  1
(DJ474175) Method for analysing genome using microsatellite ...    52   0.061  1
(AL359263) Human DNA sequence from clone RP13-88F20 on chrom...    52   0.061  1
(AL049792) Human DNA sequence from clone RP1-305B16 on chrom...    52   0.061  1
(AC068703) Homo sapiens chromosome X clone RP11-236M5, WORKI...    52   0.061  1
(AL358052) Human DNA sequence *** SEQUENCING CANCELLED *** f...    52   0.061  1
(AC220350) Bos taurus clone CH240-361E22, WORKING DRAFT SEQU...    52   0.061  1
(AC178730) Strongylocentrotus purpuratus clone R3-13D8, WORK...    52   0.061  1
(AC177421) Strongylocentrotus purpuratus clone R3-54J21, WOR...    52   0.061  1
(AC168762) Strongylocentrotus purpuratus clone R3-3004F4, WO...    52   0.061  1
(AQ603054) HS_2136_A1_C03_T7C CIT Approved Human Genomic Spe...    52   0.061  1
(AQ423520) CITBI-E1-2568P20.TF CITBI-E1 Homo sapiens genomic...    52   0.061  1
(AQ038570) CIT-HSP-2333K8.TF CIT-HSP Homo sapiens genomic cl...    52   0.061  1
(DR390824) USDA-FP_150756 Adult Alate Aphis gossypii (WHAGA)...    52   0.061  1
(DB777229) Apis mellifera head cDNA, RIKEN full-length enric...    52   0.061  1
(CT762311) Paramecium tetraurelia 5-PRIME EST from clone LK0...    40   0.078  3
(AC168432) Strongylocentrotus purpuratus clone R3-39I6, WORK...    46   0.098  6
(AM426072) Vitis vinifera contig VV78X157643.6, whole genome...    38   0.10   4
(AC179492) Strongylocentrotus purpuratus clone R3-64E12, WOR...    42   0.12   4
(AC178675) Strongylocentrotus purpuratus clone R3-12B2, WORK...    36   0.14   2
(AC176124) Strongylocentrotus purpuratus clone R3-24N17, WOR...    36   0.14   2
(AC177538) Strongylocentrotus purpuratus clone R3-1027A16, W...    36   0.14   2
(AC180257) Strongylocentrotus purpuratus clone R3-3008J14, W...    36   0.15   2
(AC114265) Dictyostelium discoideum chromosome 2 map 4520461...    36   0.16   2
(EV435791) 37497_1032 Quinqueloculina sp. cDNA library Quinq...    46   0.17   2
(BH157560) ENTRJ26TR Entamoeba histolytica Sheared DNA Entam...    36   0.18   2
(AZ544643) ENTEO40TF Entamoeba histolytica Sheared DNA Entam...    36   0.18   2
(AC147959) Medicago truncatula clone mth2-11c16, complete se...    40   0.21   6
(CR318635) Zebrafish DNA sequence from clone CH211-253D2 in ...    50   0.24   1
(EF405801) Puumala virus strain Kazan segment L, complete se...    50   0.24   1
(AC154190) Mus musculus BAC clone RP24-465P16 from chromosom...    50   0.24   1
(AY065066) Arabidopsis thaliana AT4g30600/F17I23_60 mRNA, co...    50   0.24   1
(AP006486) Cyanidioschyzon merolae DNA, chromosome 4, comple...    50   0.24   1
(AM442269) Vitis vinifera contig VV78X079716.3, whole genome...    50   0.24   1
(AF160182) Arabidopsis thaliana BAC F17I23.                        50   0.24   1
(AC216543) Populus trichocarpa clone POP015-B14, complete se...    50   0.24   1
(AC182686) Populus trichocarpa clone Pop1-37M17, complete se...    50   0.24   1
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    50   0.24   1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    50   0.24   1
(AC094128) Rattus norvegicus clone CH230-3D9, *** SEQUENCING...    50   0.24   1
(AC201133) Strongylocentrotus purpuratus clone R3-14A9, WORK...    50   0.24   1
(AC189160) Aotus nancymaae clone CH258-208L8, WORKING DRAFT ...    50   0.24   1
(AC187672) Aotus nancymaae clone CH258-250P6, WORKING DRAFT ...    50   0.24   1
(AC184565) Strongylocentrotus purpuratus clone R3-3009I1, WO...    50   0.24   1
(AC181914) Strongylocentrotus purpuratus clone R3-1011K22, W...    50   0.24   1
(AC180953) Strongylocentrotus purpuratus clone R3-3060D23, W...    50   0.24   1
(AC180025) Strongylocentrotus purpuratus clone R3-3030P3, WO...    50   0.24   1
(AC179914) Strongylocentrotus purpuratus clone R3-1003F11, W...    50   0.24   1
(AC179181) Strongylocentrotus purpuratus clone R3-4019A16, W...    50   0.24   1
(AC178588) Strongylocentrotus purpuratus clone R3-3025F04, W...    50   0.24   1
(AC178291) Strongylocentrotus purpuratus clone R3-3095A13, W...    50   0.24   1
(AC178192) Strongylocentrotus purpuratus clone R3-1116K10, W...    50   0.24   1
(AC177296) Strongylocentrotus purpuratus clone R3-44O22, WOR...    50   0.24   1
(AC174001) Strongylocentrotus purpuratus clone R3-13J1, *** ...    50   0.24   1
(AC173457) Sorex araneus clone SA_Ba-181C23, WORKING DRAFT S...    50   0.24   1
(AC168795) Strongylocentrotus purpuratus clone R3-13J1, WORK...    50   0.24   1
(AC168353) Strongylocentrotus purpuratus clone R3-56D10, WOR...    50   0.24   1
(ED530706) KBrB121J03F KBrB, Brassica rapa BamHI BAC library...    50   0.24   1
(ED513945) KBrB098B22F KBrB, Brassica rapa BamHI BAC library...    50   0.24   1
(DX020429) KBrB013N20F KBrB, Brassica rapa BamHI BAC library...    50   0.24   1
(AG964091) Drosophila sechellia DNA, clone: DSE1-025E09.R.fa...    50   0.24   1
(EG515942) AYBKB26TR pooled cDNA populations Arabidopsis tha...    50   0.24   1
(EC824079) SME00008590 esmbsro2 Sawyeria marylandensis cDNA,...    50   0.24   1
(AV812830) Arabidopsis thaliana cDNA clone:RAFL09-75-M20, 3'...    50   0.24   1
(AV811360) Arabidopsis thaliana cDNA clone:RAFL09-67-M15, 3'...    50   0.24   1
(AV805780) Arabidopsis thaliana cDNA clone:RAFL09-44-D05, 3'...    50   0.24   1
(AV802160) Arabidopsis thaliana cDNA clone:RAFL09-30-O11, 3'...    50   0.24   1
(AV797568) Arabidopsis thaliana cDNA clone:RAFL09-12-K12, 3'...    50   0.24   1

>(BJ333168) Dictyostelium discoideum cDNA clone:dda41n15, 5' end,
            single read.
          Length = 627

 Score = 1243 bits (627), Expect = 0.0
 Identities = 627/627 (100%)
 Strand = Plus / Plus


Query: 681  tttcaatcatcaagattttatattgataatttaacaagtaaaacagatatttcattagta 740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tttcaatcatcaagattttatattgataatttaacaagtaaaacagatatttcattagta 60


Query: 741  aaagaagttcatgactttttaaaagaaagtggaccagaggtatcaatatttattggtatg 800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   aaagaagttcatgactttttaaaagaaagtggaccagaggtatcaatatttattggtatg 120


Query: 801  ggtggtattgaaagtttattaggaattttacaatttaatttagataatgcgcaattacaa 860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ggtggtattgaaagtttattaggaattttacaatttaatttagataatgcgcaattacaa 180


Query: 861  tttgatgaagaaaaagttggttattgtttattatgtttaaagatattggttgaatgtaca 920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tttgatgaagaaaaagttggttattgtttattatgtttaaagatattggttgaatgtaca 240


Query: 921  gcgaaatcagtgattacaactaataactcattgaatttagttaccatgtttttgacatct 980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gcgaaatcagtgattacaactaataactcattgaatttagttaccatgtttttgacatct 300


Query: 981  gcaagtaaatatatcattgatatcatcattgatatctatgatgaactgctaagattacaa 1040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gcaagtaaatatatcattgatatcatcattgatatctatgatgaactgctaagattacaa 360


Query: 1041 gttattggtgttagtgttgtattggattcattaattaattttcaaaaagtgaaaggattg 1100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  gttattggtgttagtgttgtattggattcattaattaattttcaaaaagtgaaaggattg 420


Query: 1101 agttcaccttacgtaccattggttgcattactaagaaatccaatcattgaaatgccaact 1160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  agttcaccttacgtaccattggttgcattactaagaaatccaatcattgaaatgccaact 480


Query: 1161 aaaacaacggttttcaaaattatcaactttttaatctactcatttagtgtgcttgaagag 1220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  aaaacaacggttttcaaaattatcaactttttaatctactcatttagtgtgcttgaagag 540


Query: 1221 agattctctgtaatttgctcactattaaaagttggtattttagaagtgattggtatgttt 1280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  agattctctgtaatttgctcactattaaaagttggtattttagaagtgattggtatgttt 600


Query: 1281 agagcactacctcatacatcatatagt 1307
            |||||||||||||||||||||||||||
Sbjct: 601  agagcactacctcatacatcatatagt 627

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,577,451,834
Number of extensions: 100976084
Number of successful extensions: 9519337
Number of sequences better than 10.0: 837
Length of query: 1460
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1436
Effective length of database: 97,308,875,965
Effective search space: 139735545885740
Effective search space used: 139735545885740
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12693-1 (Contig-U12693-1Q) /CSM_Contig/Contig-U12693-1Q.Seq.d
         (1460 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5TJ55) RecName: Full=Formin-D; AltName: Full=Diaphanous-relate...    66   3e-09
(Q54N00) RecName: Full=Formin-H; AltName: Full=Diaphanous-relate...    47   0.001
AC115592_17(AC115592|pid:none) Dictyostelium discoideum chromoso...    45   0.007
AF012285_11(AF012285|pid:none) Bacillus subtilis mobA-nprE gene ...    37   1.8
CP001015_1793(CP001015|pid:none) Streptococcus pneumoniae G54, c...    37   2.4
FM211187_1829(FM211187|pid:none) Streptococcus pneumoniae ATCC 7...    37   2.4
CP000155_1879(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    35   5.3
BX324141_1(BX324141|pid:none) Zebrafish DNA sequence from clone ...    35   9.0
BC163491_1(BC163491|pid:none) Danio rerio dishevelled associated...    35   9.0
CP000918_1876(CP000918|pid:none) Streptococcus pneumoniae 70585,...    35   9.0

>(Q5TJ55) RecName: Full=Formin-D; AltName: Full=Diaphanous-related
            formin dia4;  &AJ812734_1(AJ812734|pid:none)
          Length = 1214

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 5/247 (2%)
 Frame = +3

Query: 645  HQFNNKLQKNSNF-QSSRFYIDNLTSKTDISLVKEVHDFLKESGPE-VSIFIGMGGIESL 818
            ++F NK +K S   QS  +++D L +     ++  +   L     + +  F+ + G+  L
Sbjct: 63   NEFGNKSKKKSIITQSPHYFVDCLKNDPSKEVLTSLRVRLGNQPLKWLKEFLSLDGVSLL 122

Query: 819  LGILQFN-LDNAQLQFDEEKVGYCLLCLKILVECT--AKSVITTNNSLNLVTMFLTSASK 989
            + +L  N +   + Q D  K+  CL  LK+++      +SVI    +++ +++ + +
Sbjct: 123  IKVLILNEIKQVKNQEDIYKIAQCLHSLKLIMNTKFGLESVIKQPTNIHSISLVMDTPHL 182

Query: 990  XXXXXXXXXXXELLRLQVIGVSVVLDSLINFQKVKGLSSPYVPLVALLRNPIIEMPTKTT 1169
                        L  +   G+ +VL ++ N+++VK    P++ L   L+NP   +  + T
Sbjct: 183  KTRIMVIELLAALCVVNSKGLPLVLSAMDNYREVKREKKPFIHLFQGLKNPSGSL--QAT 240

Query: 1170 VFKIINFLIYSFSVLEERFSVICSLLKVGILEVIGMFRALPHTSYSLRFELDLFEEVLDS 1349
             F +IN LI S   +EER  +     K+GI +VI         +  L  + DL+E+
Sbjct: 241  TFALINTLISSSQSVEERQKIRNQFKKLGITKVIEELEPEYANNPDLATQKDLYEQECRW 300

Query: 1350 DESELVK 1370
            DE E ++
Sbjct: 301  DEQEQIE 307

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,574,032,413
Number of extensions: 24623397
Number of successful extensions: 74966
Number of sequences better than 10.0: 10
Number of HSP's gapped: 74921
Number of HSP's successfully gapped: 11
Length of query: 486
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 353
Effective length of database: 620,718,517
Effective search space: 219113636501
Effective search space used: 219113636501
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.79  gvh: 0.24  alm: 0.27  top: 0.50  tms: 0.33  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U12693-1 is pla
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0