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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12691-1
Contig ID Contig-U12691-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12691-1 (Contig-U12691-1Q) /CSM_Contig/Contig-U12691-1Q.Seq.d
TGGCCTACTGGAAAAAAAAATAAAAAGGAAAATGGTGAAGGATTATTTAT
AGATTTAATCGGATTATTAGCATTTAGTAAAAAATATGTTCAACTTAATC
ATCAAAAAACACATCATCATTTATATTTAAATTTTAAAAAAGTAGCAATT
GTTAATGAAAAAGTTAAAAGTCCAACTATAGAGAATGGTGGTGAAGAGAA
ACCACCAAAGAAATTAGCGATTGGAGTTGAAGGTGGATTTAATGTTGAGG
ATGAAGAGATAAAGTATGAAGAACACTATAAGCTTTATATATTCCCAGAT
GATAAATTTTTAGAATTATCAGATCCAATAATACCAGAGAATGTACGTGT
ATGCTGTGAGAAAATTAAAACATTGAATTCACAAAGTAGAAAAGAAGAAA
TCGTCAGTTGGAATGCAGAATCAGTATTCCCATCAGCATTTGCCGAATCA
ATCATTCAACTCGACAACAACACCAAGAAAATCGATCCTAAAGGACCATG
GAGATGCGATATTGAGGGATGTGATAAGGTTGAGAATCTTTGGTTGAATT
TAACCGATGGTTTCATTGGTTGCGGTANAAAGTATGCCGATGGCACAGGT
GGCAATGGCCATGCCCAAGAGCATTTCAACCAAACTCAATACCCAATCTC
TGTAAAGTTAGGCACAATCACCAAAGACCATGCAGATGTTTATAGTTACC
CAGAGGATGATATGGTATCTGATCCATTGTTATTCCAACATCTAACTCAT
TGGGGTTTGAACCCAAACGTTATGGTGAAAACTGAGAAATCCATGGCAGA
ATTAGAATTGGATCAAAATTTGAATTTCGAATTTGGCAAGATTCAAGAGA
Gap no gap
Contig length 850
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 284349
End point 285187
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U12691
List of clone(s) 

est1=AHF172F,1,573
est2=AHP783F,20,492
est3=VHO311F,339,850
Translated Amino Acid sequence 
WPTGKKNKKENGEGLFIDLIGLLAFSKKYVQLNHQKTHHHLYLNFKKVAIVNEKVKSPTI
ENGGEEKPPKKLAIGVEGGFNVEDEEIKYEEHYKLYIFPDDKFLELSDPIIPENVRVCCE
KIKTLNSQSRKEEIVSWNAESVFPSAFAESIIQLDNNTKKIDPKGPWRCDIEGCDKVENL
WLNLTDGFIGCGXKYADGTGGNGHAQEHFNQTQYPISVKLGTITKDHADVYSYPEDDMVS
DPLLFQHLTHWGLNPNVMVKTEKSMAELELDQNLNFEFGKIQE
Translated Amino Acid sequence (All Frames) 
Frame A:
WPTGKKNKKENGEGLFIDLIGLLAFSKKYVQLNHQKTHHHLYLNFKKVAIVNEKVKSPTI
ENGGEEKPPKKLAIGVEGGFNVEDEEIKYEEHYKLYIFPDDKFLELSDPIIPENVRVCCE
KIKTLNSQSRKEEIVSWNAESVFPSAFAESIIQLDNNTKKIDPKGPWRCDIEGCDKVENL
WLNLTDGFIGCGXKYADGTGGNGHAQEHFNQTQYPISVKLGTITKDHADVYSYPEDDMVS
DPLLFQHLTHWGLNPNVMVKTEKSMAELELDQNLNFEFGKIQE


Frame B:
gllekkikrkmvkdyl*i*sdy*hlvknmfnliikkhiiiyi*ilkk*qllmkklkvql*
rmvvkrnhqrn*rlelkvdlmlrmkr*smkntisfiysqminf*nyqiq*yqrmyvyavr
klkh*ihkvekkkssvgmqnqyshqhlpnqsfnstttprksilkdhgdailrdvirlrif
g*i*pmvslvavxsmpmaqvamampksistklntqsl*s*aqspktmqmfivtqrmiwyl
ihcysni*ligv*tqtlw*klrnpwqn*nwiki*isnlarfkr


Frame C:
aywkkk*kgkw*riiyrfnriisi**kicst*sskntssfifkf*kssnc**ks*ksnyr
eww*rettkeisdws*rwi*c*g*rdkv*rtl*alyipr**ifriirsnntrectcml*e
n*nieftk*krrnrqlecrisipisicrinhstrqqhqenrs*rtmemry*gm**g*esl
vefnrwfhwlrxkvcrwhrwqwpcprafqpnsipnlckvrhnhqrpcrcl*lprg*ygi*
siviptsnslgfepkrygen*eihgririgskfefriwqdsr
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12691-1 (Contig-U12691-1Q)
/CSM_Contig/Contig-U12691-1Q.Seq.d
         (850 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12691-1 (Contig-U12691-1Q) /CSM_Contig/Conti...  1628  0.0
Contig-U08448-1 (Contig-U08448-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U09777-1 (Contig-U09777-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U07978-1 (Contig-U07978-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U13898-1 (Contig-U13898-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U13391-1 (Contig-U13391-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U13335-1 (Contig-U13335-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U11806-1 (Contig-U11806-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U11761-1 (Contig-U11761-1Q) /CSM_Contig/Conti...    34  0.24

>Contig-U12691-1 (Contig-U12691-1Q) /CSM_Contig/Contig-U12691-1Q.Seq.d
          Length = 850

 Score = 1628 bits (821), Expect = 0.0
 Identities = 824/824 (100%)
 Strand = Plus / Plus

                                                                       
Query: 27  ggaaaatggtgaaggattatttatagatttaatcggattattagcatttagtaaaaaata 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27  ggaaaatggtgaaggattatttatagatttaatcggattattagcatttagtaaaaaata 86

                                                                       
Query: 87  tgttcaacttaatcatcaaaaaacacatcatcatttatatttaaattttaaaaaagtagc 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  tgttcaacttaatcatcaaaaaacacatcatcatttatatttaaattttaaaaaagtagc 146

                                                                       
Query: 147 aattgttaatgaaaaagttaaaagtccaactatagagaatggtggtgaagagaaaccacc 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 aattgttaatgaaaaagttaaaagtccaactatagagaatggtggtgaagagaaaccacc 206

                                                                       
Query: 207 aaagaaattagcgattggagttgaaggtggatttaatgttgaggatgaagagataaagta 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aaagaaattagcgattggagttgaaggtggatttaatgttgaggatgaagagataaagta 266

                                                                       
Query: 267 tgaagaacactataagctttatatattcccagatgataaatttttagaattatcagatcc 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaagaacactataagctttatatattcccagatgataaatttttagaattatcagatcc 326

                                                                       
Query: 327 aataataccagagaatgtacgtgtatgctgtgagaaaattaaaacattgaattcacaaag 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aataataccagagaatgtacgtgtatgctgtgagaaaattaaaacattgaattcacaaag 386

                                                                       
Query: 387 tagaaaagaagaaatcgtcagttggaatgcagaatcagtattcccatcagcatttgccga 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tagaaaagaagaaatcgtcagttggaatgcagaatcagtattcccatcagcatttgccga 446

                                                                       
Query: 447 atcaatcattcaactcgacaacaacaccaagaaaatcgatcctaaaggaccatggagatg 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcaatcattcaactcgacaacaacaccaagaaaatcgatcctaaaggaccatggagatg 506

                                                                       
Query: 507 cgatattgagggatgtgataaggttgagaatctttggttgaatttaaccgatggtttcat 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cgatattgagggatgtgataaggttgagaatctttggttgaatttaaccgatggtttcat 566

                                                                       
Query: 567 tggttgcggtanaaagtatgccgatggcacaggtggcaatggccatgcccaagagcattt 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tggttgcggtanaaagtatgccgatggcacaggtggcaatggccatgcccaagagcattt 626

                                                                       
Query: 627 caaccaaactcaatacccaatctctgtaaagttaggcacaatcaccaaagaccatgcaga 686
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 caaccaaactcaatacccaatctctgtaaagttaggcacaatcaccaaagaccatgcaga 686

                                                                       
Query: 687 tgtttatagttacccagaggatgatatggtatctgatccattgttattccaacatctaac 746
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgtttatagttacccagaggatgatatggtatctgatccattgttattccaacatctaac 746

                                                                       
Query: 747 tcattggggtttgaacccaaacgttatggtgaaaactgagaaatccatggcagaattaga 806
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tcattggggtttgaacccaaacgttatggtgaaaactgagaaatccatggcagaattaga 806

                                                       
Query: 807 attggatcaaaatttgaatttcgaatttggcaagattcaagaga 850
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 attggatcaaaatttgaatttcgaatttggcaagattcaagaga 850


>Contig-U08448-1 (Contig-U08448-1Q) /CSM_Contig/Contig-U08448-1Q.Seq.d
          Length = 608

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 184 aatggtggtgaagagaaaccaccaaa 209
           ||||||| ||||||||||||||||||
Sbjct: 478 aatggtgttgaagagaaaccaccaaa 453


>Contig-U09777-1 (Contig-U09777-1Q) /CSM_Contig/Contig-U09777-1Q.Seq.d
          Length = 1024

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 aaaaaacacatcatcattta 123
           ||||||||||||||||||||
Sbjct: 403 aaaaaacacatcatcattta 384


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,540
Number of Sequences: 6905
Number of extensions: 11540
Number of successful extensions: 1430
Number of sequences better than 10.0: 161
length of query: 850
length of database: 5,674,871
effective HSP length: 16
effective length of query: 834
effective length of database: 5,564,391
effective search space: 4640702094
effective search space used: 4640702094
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12691-1 (Contig-U12691-1Q) /CSM_Contig/Contig-U12691-1Q.Seq.d
         (850 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U48271) Dictyostelium discoideum UbpA deubiquitinase mRNA, ...  1392   0.0    1
(BJ426460) Dictyostelium discoideum cDNA clone:ddv59f03, 5' ...   991   0.0    1
(BJ333173) Dictyostelium discoideum cDNA clone:dda41o17, 5' ...   856   0.0    2
(BJ338738) Dictyostelium discoideum cDNA clone:dda62f21, 5' ...   664   0.0    2
(EL377729) CFFM15062.b1_K21.ab1 CFF(LMS) safflower Carthamus...    58   6e-04  1
(EH714672) CNML14147.b1_F10.ab1 CNM(LMS) spotted knapweed Ce...    50   0.14   1
(EJ792878) 1093017386440 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.54   1
(EJ733933) 1092961054267 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.54   1
(EJ676254) 1092955083055 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.54   1
(AL672042) Mouse DNA sequence from clone RP23-91P22 on chrom...    44   0.80   4
(EX649064) 256727617 Pea aphid whole body normalized full le...    36   1.4    2
(EX608223) 255361923 Pea aphid whole body normalized full le...    36   1.4    2
(CN758898) ID0AAA24AA10RM1 ApMS Acyrthosiphon pisum cDNA clo...    36   1.5    2
(CU457491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.2    1
(EJ094871) 1095460273651 Global-Ocean-Sampling_GS-26-01-01-1...    46   2.2    1
(CX366283) JGI_XZT30008.fwd NIH_XGC_tropTad5 Xenopus (Silura...    46   2.2    1
(CA271375) SCBGLB2072E12.g LB2 Saccharum officinarum cDNA cl...    46   2.2    1
(CA236575) SCSBFL5014G06.g Saccharum officinarum FL5 Sacchar...    46   2.2    1
(DX545398) GH_MBb0070K18f GH_MBb Gossypium hirsutum genomic ...    38   2.4    2
(AC005835) Mus musculus clone UWGC:mbac82 from 14D1-D2 (T-Ce...    44   2.5    3
(AC119962) Mus musculus chromosome 14, clone RP24-468L11, co...    44   2.8    3
(CB329178) kb49a03.y1 Brugia malayi 2D L3 irradiated pAMP1 v...    34   5.6    2
(AC202359) Medicago truncatula clone mth2-57d4, WORKING DRAF...    42   6.6    6
(AE008686) Mus musculus T-cell receptor alpha/delta locus  s...    44   8.5    1
(AB073164) Arabidopsis thaliana DNA, chromosome 4 centromere...    44   8.5    1
(AF317338) Grapsus albolineatus cytochrome c oxidase subunit...    44   8.5    1
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    44   8.5    1
(AJ337982) Homo sapiens genomic sequence surrounding NotI si...    44   8.5    1
(AC025741) Homo sapiens BAC clone RP11-501E14 from 4, comple...    44   8.5    1
(AC119029) Rattus norvegicus clone CH230-501I3, *** SEQUENCI...    44   8.5    1
(CU896558) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(AC208546) Zea mays chromosome 2 clone CH201-300K2; ZMMBBc03...    44   8.5    1
(AC203794) Zea mays chromosome 5 clone CH201-514J24; ZMMBBc0...    44   8.5    1
(AC190968) Zea mays chromosome 5 clone CH201-47D11; ZMMBBc00...    44   8.5    1
(AC174901) Bos taurus clone CH240-245F7, WORKING DRAFT SEQUE...    44   8.5    1
(EJ882663) 1093018403790 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.5    1
(EJ882621) 1093018403743 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.5    1
(EJ780466) 1093017247739 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.5    1
(DX357080) ZMMBBc0047D11.rq ZMMBB_VAL Zea mays genomic clone...    44   8.5    1
(DU552483) OO__Ba0030N02.f OO__Ba Oryza officinalis genomic ...    44   8.5    1
(CZ167329) OC__Ba0005K23.r OC__Ba Oryza coarctata genomic cl...    44   8.5    1
(CT954888) Arabidopsis thaliana T-DNA flanking sequence GK-9...    44   8.5    1
(CL182654) 104_394_10897623_116_31920_231 Sorghum methylatio...    44   8.5    1
(CG928985) MBEKA23TRB mth2 Medicago truncatula genomic clone...    44   8.5    1
(EL476161) CHUL4104.b1_O18.ab1 CHU(LMS) puzzle sunflower Hel...    44   8.5    1
(EL473924) CHUL1852.b1_H08.ab1 CHU(LMS) puzzle sunflower Hel...    44   8.5    1
(EL473578) CHUL1499.b1_F16.ab1 CHU(LMS) puzzle sunflower Hel...    44   8.5    1
(EL455584) CHTM8233.b1_B19.ab1 CHT(LMS) Jerusalem artichoke ...    44   8.5    1
(EL435045) CHTL2939.b2_E16.ab1 CHT(LMS) Jerusalem artichoke ...    44   8.5    1
(EL415622) CHCL428.b1_G11.ab1 CHC(LMS) Texas blueweed Helian...    44   8.5    1
(DT710125) s13dFA62H02ST028_401899 Tall fescue, Festuca arun...    44   8.5    1
(DT706022) s13dFA50E12RT087_115848 Tall fescue, Festuca arun...    44   8.5    1
(DN590178) 91011.1 Late Blight-Challenged Tubers Solanum tub...    44   8.5    1
(AU060999) Dictyostelium discoideum slug cDNA, clone SLC566.       44   8.5    1
(AU034312) Dictyostelium discoideum slug cDNA, clone SLC566.       44   8.5    1
(CX534638) s13dNF78B08MJ073_330974 Methyl Jasmonate-Elicited...    44   8.5    1
(CK987801) SP11-F10(P23-C1) A suppression subtractive hybrid...    44   8.5    1
(BP049966) Lotus japonicus cDNA, clone:SPD075b04_f, 3' end.        44   8.5    1
(BP049264) Lotus japonicus cDNA, clone:SPD066d05_f, 3' end.        44   8.5    1
(BI798737) H115B09 Endosperm library from Oryza sativa (10 d...    44   8.5    1
(EY304831) CAWX18858.fwd CAWX Helobdella robusta Primary Ear...    44   8.5    1
(EV260482) MTYE823TF JCVI-MT1 Medicago truncatula cDNA 5', m...    44   8.5    1
(AW329706) N200970e rootphos(-) Medicago truncatula cDNA clo...    44   8.5    1

>(U48271) Dictyostelium discoideum UbpA deubiquitinase mRNA, complete
            cds.
          Length = 2794

 Score = 1392 bits (702), Expect = 0.0
 Identities = 707/709 (99%)
 Strand = Plus / Plus


Query: 142  gtagcaattgttaatgaaaaagttaaaagtccaactatagagaatggtggtgaagagaaa 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339  gtagcaattgttaatgaaaaagttaaaagtccaactatagagaatggtggtgaagagaaa 398


Query: 202  ccaccaaagaaattagcgattggagttgaaggtggatttaatgttgaggatgaagagata 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399  ccaccaaagaaattagcgattggagttgaaggtggatttaatgttgaggatgaagagata 458


Query: 262  aagtatgaagaacactataagctttatatattcccagatgataaatttttagaattatca 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459  aagtatgaagaacactataagctttatatattcccagatgataaatttttagaattatca 518


Query: 322  gatccaataataccagagaatgtacgtgtatgctgtgagaaaattaaaacattgaattca 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519  gatccaataataccagagaatgtacgtgtatgctgtgagaaaattaaaacattgaattca 578


Query: 382  caaagtagaaaagaagaaatcgtcagttggaatgcagaatcagtattcccatcagcattt 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579  caaagtagaaaagaagaaatcgtcagttggaatgcagaatcagtattcccatcagcattt 638


Query: 442  gccgaatcaatcattcaactcgacaacaacaccaagaaaatcgatcctaaaggaccatgg 501
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 639  gccgaatcaatcattcaactcgacaacaacaacaagaaaatcgatcctaaaggaccatgg 698


Query: 502  agatgcgatattgagggatgtgataaggttgagaatctttggttgaatttaaccgatggt 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699  agatgcgatattgagggatgtgataaggttgagaatctttggttgaatttaaccgatggt 758


Query: 562  ttcattggttgcggtanaaagtatgccgatggcacaggtggcaatggccatgcccaagag 621
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  ttcattggttgcggtagaaagtatgccgatggcacaggtggcaatggccatgcccaagag 818


Query: 622  catttcaaccaaactcaatacccaatctctgtaaagttaggcacaatcaccaaagaccat 681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819  catttcaaccaaactcaatacccaatctctgtaaagttaggcacaatcaccaaagaccat 878


Query: 682  gcagatgtttatagttacccagaggatgatatggtatctgatccattgttattccaacat 741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879  gcagatgtttatagttacccagaggatgatatggtatctgatccattgttattccaacat 938


Query: 742  ctaactcattggggtttgaacccaaacgttatggtgaaaactgagaaatccatggcagaa 801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  ctaactcattggggtttgaacccaaacgttatggtgaaaactgagaaatccatggcagaa 998


Query: 802  ttagaattggatcaaaatttgaatttcgaatttggcaagattcaagaga 850
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  ttagaattggatcaaaatttgaatttcgaatttggcaagattcaagaga 1047

 Score = 89.7 bits (45), Expect = 2e-13
 Identities = 45/45 (100%)
 Strand = Plus / Plus


Query: 33  tggtgaaggattatttatagatttaatcggattattagcatttag 77
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tggtgaaggattatttatagatttaatcggattattagcatttag 274

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 833,131,351
Number of extensions: 48321413
Number of successful extensions: 3745967
Number of sequences better than 10.0: 63
Length of query: 850
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 826
Effective length of database: 97,308,875,965
Effective search space: 80377131547090
Effective search space used: 80377131547090
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12691-1 (Contig-U12691-1Q) /CSM_Contig/Contig-U12691-1Q.Seq.d
         (850 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54201) RecName: Full=Ubiquitin carboxyl-terminal hydrolase A; ...   559   e-158
BT066150_1(BT066150|pid:none) Zea mays full-length cDNA clone ZM...   230   4e-59
(Q8L6Y1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 14;...   227   4e-58
AP000410_17(AP000410|pid:none) Arabidopsis thaliana genomic DNA,...   222   1e-56
(Q5R407) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...   212   1e-53
AY892188_1(AY892188|pid:none) Synthetic construct Homo sapiens c...   212   1e-53
BC004889_1(BC004889|pid:none) Homo sapiens ubiquitin specific pe...   212   1e-53
(P45974) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...   212   1e-53
S68227(S68227;S74295;G02070) ubiquitin thiolesterase (EC 3.1.2.1...   211   2e-53
(P56399) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...   209   9e-53
AK154008_1(AK154008|pid:none) Mus musculus 2 days neonate thymus...   209   9e-53
BT045992_1(BT045992|pid:none) Salmo salar clone ssal-rgf-538-245...   206   8e-52
BC079778_1(BC079778|pid:none) Xenopus laevis MGC86287 protein, m...   204   2e-51
AL929502_5(AL929502|pid:none) Zebrafish DNA sequence from clone ...   203   5e-51
BC066694_1(BC066694|pid:none) Danio rerio ubiquitin specific pro...   203   5e-51
AE014296_606(AE014296|pid:none) Drosophila melanogaster chromoso...   196   6e-49
FN317173_1(FN317173|pid:none) Schistosoma japonicum isolate Anhu...   175   2e-42
AC148815_25(AC148815|pid:none) Medicago truncatula chromosome 2 ...   162   1e-38
CP001328_586(CP001328|pid:none) Micromonas sp. RCC299 chromosome...   162   1e-38
BC090999_1(BC090999|pid:none) Mus musculus ubiquitin specific pe...   162   2e-38
AM393315_1(AM393315|pid:none) Synthetic construct Homo sapiens c...   161   3e-38
U75362_1(U75362|pid:none) Homo sapiens isopeptidase T-3 (ISOT-3)...   161   3e-38
AM393392_1(AM393392|pid:none) Synthetic construct Homo sapiens c...   159   1e-37
AL035476_11(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...   141   2e-32
BX538353_18(BX538353|pid:none) Cryptosporidium parvum chromosome...   139   2e-31
T25921(T25921)hypothetical protein T27A3.2 - Caenorhabditis eleg...   138   3e-31
U88180_7(U88180|pid:none) Caenorhabditis elegans cosmid T27A3, c...   138   3e-31
CR954204_452(CR954204|pid:none) Ostreococcus tauri strain OTTH05...   129   2e-28
FN392321_960(FN392321|pid:none) Pichia pastoris GS115 chromosome...   124   5e-27
(Q11119) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 14;...   120   6e-26
D83659_1(D83659|pid:none) Schizosaccharomyces pombe zer1+ gene f...   120   6e-26
AP007154_674(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...   114   5e-24
AE017346_274(AE017346|pid:none) Cryptococcus neoformans var. neo...   113   9e-24
AM270041_9(AM270041|pid:none) Aspergillus niger contig An02c0480...   113   9e-24
CU633454_17(CU633454|pid:none) Podospora anserina genomic DNA ch...   110   6e-23
AM920436_1145(AM920436|pid:none) Penicillium chrysogenum Wiscons...   108   2e-22
CR940347_864(CR940347|pid:none) Theileria annulata strain Ankara...   105   2e-21
AM494966_227(AM494966|pid:none) Leishmania braziliensis chromoso...    95   3e-18
AM502247_265(AM502247|pid:none) Leishmania infantum chromosome 29.     94   6e-18
AC091483_29(AC091483|pid:none) Trypanosoma brucei chromosome 3 c...    91   5e-17
AE016820_391(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    78   4e-13
AX887301_1(AX887301|pid:none) Sequence 3164 from Patent EP1033401.     77   6e-13
CU928178_43(CU928178|pid:none) Zygosaccharomyces rouxii strain C...    76   1e-12
CU928167_306(CU928167|pid:none) Kluyveromyces thermotolerans str...    76   2e-12
CR380954_439(CR380954|pid:none) Candida glabrata strain CBS138 c...    70   7e-11
FN357681_4(FN357681|pid:none) Schistosoma mansoni genome sequenc...    45   0.002
AE014297_2735(AE014297|pid:none) Drosophila melanogaster chromos...    45   0.003
CU633895_331(CU633895|pid:none) Podospora anserina genomic DNA c...    40   0.075
EU960739_1(EU960739|pid:none) Zea mays clone 228119 BRCA1-associ...    40   0.075
BT033665_1(BT033665|pid:none) Zea mays full-length cDNA clone ZM...    39   0.17
AC004747_17(AC004747|pid:none) Arabidopsis thaliana chromosome 2...    39   0.17
AC002561_7(AC002561|pid:none) Arabidopsis thaliana chromosome 2 ...    39   0.28
DQ987496_1(DQ987496|pid:none) Gibberella zeae RING-10 protein mR...    39   0.28
FM992689_207(FM992689|pid:none) Candida dubliniensis CD36 chromo...    37   0.63
AK071891_1(AK071891|pid:none) Oryza sativa Japonica Group cDNA c...    37   0.63
FN357593_5(FN357593|pid:none) Schistosoma mansoni genome sequenc...    37   0.63
BC038490_1(BC038490|pid:none) Mus musculus BRCA1 associated prot...    37   0.83
AF421550_1(AF421550|pid:none) Squalus acanthias BRAP2 mRNA, comp...    37   0.83
(Q7Z569) RecName: Full=BRCA1-associated protein;          EC=6.3...    37   0.83
AY331413_1(AY331413|pid:none) Xenopus laevis IMP protein mRNA, c...    37   0.83
BC136698_1(BC136698|pid:none) Homo sapiens BRCA1 associated prot...    37   0.83
AK299326_1(AK299326|pid:none) Homo sapiens cDNA FLJ50182 complet...    37   0.83
AK013885_1(AK013885|pid:none) Mus musculus 12 days embryo head c...    37   0.83
AF321921_1(AF321921|pid:none) Mus musculus BRAP2 variant 2 mRNA,...    37   0.83
AF035620_1(AF035620|pid:none) Homo sapiens BRCA1-associated prot...    37   0.83
BC146079_1(BC146079|pid:none) Bos taurus BRCA1 associated protei...    37   0.83
BC060490_1(BC060490|pid:none) Xenopus laevis hypothetical protei...    37   0.83
AJ719925_1(AJ719925|pid:none) Gallus gallus mRNA for hypothetica...    37   0.83
BC077329_1(BC077329|pid:none) Xenopus laevis IMP protein, mRNA (...    37   0.83
CU928171_498(CU928171|pid:none) Kluyveromyces thermotolerans str...    37   1.1
AP009324_2249(AP009324|pid:none) Staphylococcus aureus subsp. au...    36   1.4
AJ938182_2136(AJ938182|pid:none) Staphylococcus aureus RF122 com...    36   1.4
AE017347_427(AE017347|pid:none) Cryptococcus neoformans var. neo...    36   1.4
AM456097_1(AM456097|pid:none) Vitis vinifera contig VV78X047607....    36   1.8
AM392541_1(AM392541|pid:none) Synthetic construct Homo sapiens c...    35   2.4
(Q9H0E7) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 44;...    35   2.4
(Q95QN6) RecName: Full=Uncharacterized RING finger protein EEED8...    35   2.4
AM920437_1238(AM920437|pid:none) Penicillium chrysogenum Wiscons...    35   3.1
AY535286_1(AY535286|pid:none) Agabus affinis isolate Aff1 cytoch...    35   3.1
AE009441_2344(AE009441|pid:none) Pyrobaculum aerophilum str. IM2...    35   4.1
FJ611395_1(FJ611395|pid:none) Plethodon fourchensis voucher DBS ...    34   5.4
FJ611471_1(FJ611471|pid:none) Plethodon fourchensis voucher DBS ...    34   5.4
FJ611385_1(FJ611385|pid:none) Plethodon fourchensis voucher DBS ...    34   5.4
FJ611465_1(FJ611465|pid:none) Plethodon fourchensis voucher DBS ...    34   5.4
FJ611400_1(FJ611400|pid:none) Plethodon fourchensis voucher DBS ...    34   5.4
FJ611415_1(FJ611415|pid:none) Plethodon fourchensis voucher DBS ...    34   5.4
FJ611352_1(FJ611352|pid:none) Plethodon fourchensis voucher DBS ...    34   5.4
FJ266741_1(FJ266741|pid:none) Plethodon fourchensis voucher DBS ...    34   5.4
AL844507_84(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    34   7.0
AB072750_1(AB072750|pid:none) Macaca fascicularis testis cDNA cl...    34   7.0
CP000300_443(CP000300|pid:none) Methanococcoides burtonii DSM 62...    34   7.0
BC048060_1(BC048060|pid:none) Danio rerio zgc:55661, mRNA (cDNA ...    34   7.0
AE009440_713(AE009440|pid:none) Chlamydophila pneumoniae TW-183,...    33   9.1
AE001363_671(AE001363|pid:none) Chlamydophila pneumoniae CWL029,...    33   9.1
CP000927_2826(CP000927|pid:none) Caulobacter sp. K31, complete g...    33   9.1
FJ611479_1(FJ611479|pid:none) Plethodon fourchensis voucher KJI ...    33   9.1
AE017346_12(AE017346|pid:none) Cryptococcus neoformans var. neof...    33   9.1
FJ377430_1(FJ377430|pid:none) Paralichthys olivaceus MHC class I...    33   9.1
AE017346_11(AE017346|pid:none) Cryptococcus neoformans var. neof...    33   9.1
CP001348_594(CP001348|pid:none) Clostridium cellulolyticum H10, ...    33   9.1
FJ010563_1(FJ010563|pid:none) Gymnura australis haplotype Gaustr...    33   9.1

>(P54201) RecName: Full=Ubiquitin carboxyl-terminal hydrolase A;
                EC=3.1.2.15; AltName: Full=Ubiquitin thioesterase
           A; AltName: Full=Ubiquitin-specific-processing protease
           A; AltName: Full=Deubiquitinating enzyme A;
          Length = 837

 Score =  559 bits (1441), Expect = e-158
 Identities = 268/269 (99%), Positives = 268/269 (99%)
 Frame = +1

Query: 43  LFIDLIGLLAFSKKYVQLNHQKTHHHLYLNFKKVAIVNEKVKSPTIENGGEEKPPKKLAI 222
           LFIDLIGLLAFSKKYVQLNHQKTHHHLYLNFKKVAIVNEKVKSPTIENGGEEKPPKKLAI
Sbjct: 37  LFIDLIGLLAFSKKYVQLNHQKTHHHLYLNFKKVAIVNEKVKSPTIENGGEEKPPKKLAI 96

Query: 223 GVEGGFNVEDEEIKYEEHYKLYIFPDDKFLELSDPIIPENVRVCCEKIKTLNSQSRKEEI 402
           GVEGGFNVEDEEIKYEEHYKLYIFPDDKFLELSDPIIPENVRVCCEKIKTLNSQSRKEEI
Sbjct: 97  GVEGGFNVEDEEIKYEEHYKLYIFPDDKFLELSDPIIPENVRVCCEKIKTLNSQSRKEEI 156

Query: 403 VSWNAESVFPSAFAESIIQLDNNTKKIDPKGPWRCDIEGCDKVENLWLNLTDGFIGCGXK 582
           VSWNAESVFPSAFAESIIQLDNNTKKIDPKGPWRCDIEGCDKVENLWLNLTDGFIGCG K
Sbjct: 157 VSWNAESVFPSAFAESIIQLDNNTKKIDPKGPWRCDIEGCDKVENLWLNLTDGFIGCGRK 216

Query: 583 YADGTGGNGHAQEHFNQTQYPISVKLGTITKDHADVYSYPEDDMVSDPLLFQHLTHWGLN 762
           YADGTGGNGHAQEHFNQTQYPISVKLGTITKDHADVYSYPEDDMVSDPLLFQHLTHWGLN
Sbjct: 217 YADGTGGNGHAQEHFNQTQYPISVKLGTITKDHADVYSYPEDDMVSDPLLFQHLTHWGLN 276

Query: 763 PNVMVKTEKSMAELELDQNLNFEFGKIQE 849
           PNVMVKTEKSMAELELDQNLNFEFGKIQE
Sbjct: 277 PNVMVKTEKSMAELELDQNLNFEFGKIQE 305

Lambda     K      H
   0.316    0.137    0.418

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,358,452,540
Number of extensions: 29490163
Number of successful extensions: 120150
Number of sequences better than 10.0: 101
Number of HSP's gapped: 119985
Number of HSP's successfully gapped: 101
Length of query: 283
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 156
Effective length of database: 640,137,871
Effective search space: 99861507876
Effective search space used: 99861507876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.64  gvh: 0.47  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U12691-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0