| Contig-U12657-1 |
| Contig ID |
Contig-U12657-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1199 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
3887035 |
| End point |
3885833 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
12 |
| Number of EST |
12 |
| Link to clone list |
U12657 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 2 |
| Homology vs DNA |
Query= Contig-U12657-1 (Contig-U12657-1Q) /CSM_Contig/Contig-U12657-1Q.Seq.d
(1199 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 1459 0.0 1
(BJ436711) Dictyostelium discoideum cDNA clone:ddv32c03, 3' ... 1459 0.0 1
(BJ434535) Dictyostelium discoideum cDNA clone:ddv24l05, 3' ... 1370 0.0 1
(BJ442745) Dictyostelium discoideum cDNA clone:ddv50h24, 3' ... 1267 0.0 1
(BJ383333) Dictyostelium discoideum cDNA clone:ddc52l15, 3' ... 1265 0.0 1
(BJ437379) Dictyostelium discoideum cDNA clone:ddv34g05, 3' ... 700 0.0 4
(BJ445877) Dictyostelium discoideum cDNA clone:ddv60m23, 3' ... 692 0.0 4
(BJ354894) Dictyostelium discoideum cDNA clone:dda55h06, 3' ... 692 0.0 4
(BJ349578) Dictyostelium discoideum cDNA clone:dda36o20, 3' ... 521 0.0 4
(BJ353504) Dictyostelium discoideum cDNA clone:dda50n07, 3' ... 521 0.0 5
(BJ354274) Dictyostelium discoideum cDNA clone:dda53i01, 3' ... 420 0.0 4
(BJ446234) Dictyostelium discoideum cDNA clone:ddv62g05, 3' ... 289 e-132 5
(BJ428814) Dictyostelium discoideum cDNA clone:ddv1g12, 3' e... 446 e-121 1
(EF067921) Thalassiosira pseudonana chloroplast, complete ge... 52 1e-04 7
(BG406647) dac14h12.y1 NICHD_XGC_He1 Xenopus laevis cDNA clo... 50 0.009 2
(BJ068309) Xenopus laevis cDNA clone:XL106f18, 5' end, singl... 50 0.011 2
(EK039782) 1092959504476 Global-Ocean-Sampling_GS-31-01-01-1... 54 0.013 1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 42 0.013 18
(BX846286) RZPD Xenopus laevis cDNA clone IMAGp998P2410122 =... 50 0.016 2
(CV671895) RE-3-SJ-L_C08_RE-3-SJ-LC08-T7 Schistosoma japonic... 46 0.047 2
(AX346974) Sequence 2045 from Patent WO0200928. 52 0.050 1
(DC119326) Xenopus laevis NBRP cDNA clone:xl286j03, 5' end. 52 0.050 1
(DC049558) Xenopus laevis NBRP cDNA clone:xlk143e06ex, 5' end. 52 0.050 1
(BP677273) Xenopus laevis NBRP cDNA clone:XL426f20ex, 5' end. 52 0.050 1
(BJ031316) Xenopus laevis cDNA clone:XL006m16, 5' end, singl... 52 0.050 1
(AW645791) cm57c09.w1 Blackshear/Soares normalized Xenopus e... 52 0.050 1
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 32 0.069 11
(AY815813) Schistosoma japonicum SJCHGC03617 protein mRNA, c... 46 0.072 2
(AL954736) Zebrafish DNA sequence from clone CH211-204A14 in... 42 0.11 7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 0.11 12
(AL935203) Zebrafish DNA sequence from clone CH211-256A21 in... 40 0.12 2
(AC183528) Pan troglodytes BAC clone CH251-737P22 from chrom... 50 0.20 1
(AC183376) Pan troglodytes BAC clone CH251-735O6 from chromo... 50 0.20 1
(AF049491) Thalassiosira weissflogii cytochrome c-550 (psbV)... 50 0.20 1
(AL590076) Human DNA sequence from clone RP11-408K19 on chro... 50 0.20 1
(AC024322) Homo sapiens clone RP11-28H14, WORKING DRAFT SEQU... 50 0.20 1
(EC289229) BRAINF089699J12 POSSUM_01-POSSUM-C-BRAIN-2KB Tric... 50 0.20 1
(DN887581) nag06c12.y1 Rabbit eye minus lens and cornea. Unn... 50 0.20 1
(CB941634) AGENCOURT_13870261 NICHD_XGC_Tad2 Xenopus laevis ... 50 0.20 1
(CP000361) Arcobacter butzleri RM4018, complete genome. 44 0.21 18
(CS468836) Sequence 27 from Patent EP1748080. 36 0.24 6
(CS468835) Sequence 26 from Patent EP1748080. 36 0.24 6
(CS419313) Sequence 27 from Patent WO2006094836. 36 0.24 6
(CS419312) Sequence 26 from Patent WO2006094836. 36 0.24 6
(ED717105) GM_WBb0067D04.r GM_WBb Glycine max genomic clone ... 38 0.33 3
(AC214103) Pongo abelii chromosome UNKNOWN clone CH276-238M1... 42 0.34 7
(AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 0.57 10
(EJ710317) 1092956072403 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.58 2
(AC181559) Strongylocentrotus purpuratus clone R3-7J22, WORK... 44 0.58 7
(CZ519179) GMW2-67D4a.g2 GMW2 Glycine max genomic, genomic s... 38 0.61 3
(CZ508822) GMW2-67D4a.g1 GMW2 Glycine max genomic, genomic s... 38 0.61 3
(ER289683) 1092343593402 Global-Ocean-Sampling_GS-34-01-01-1... 42 0.65 3
(EU176402) Synthetic construct Homo sapiens clone IMAGE:1000... 48 0.77 1
(BC100569) Mus musculus cleavage and polyadenylation specifi... 48 0.77 1
(BC099817) Rattus norvegicus cleavage and polyadenylation sp... 48 0.77 1
(BC023297) Mus musculus cleavage and polyadenylation specifi... 48 0.77 1
(AF203969) Mus musculus cleavage and polyadenylation specifi... 48 0.77 1
(AB169076) Macaca fascicularis testis cDNA, clone: QtsA-1704... 48 0.77 1
(AB168921) Macaca fascicularis testis cDNA, clone: QtsA-1582... 48 0.77 1
(AM448345) Vitis vinifera, whole genome shotgun sequence, co... 48 0.77 1
(AJ409097) Pichia etchellsii plasmid pPE1A ORF1, ORF2, ORF3,... 48 0.77 1
(CQ412963) Sequence 20034 from Patent WO0170979. 48 0.77 1
(BD310271) Human prostate cancer associated gene sequences a... 48 0.77 1
(AX346959) Sequence 2030 from Patent WO0200928. 48 0.77 1
(X95906) B.taurus mRNA for CPSF (cleavage and polyadenylatio... 48 0.77 1
(BC104553) Bos taurus cleavage and polyadenylation specific ... 48 0.77 1
(BC043432) Homo sapiens cleavage and polyadenylation specifi... 48 0.77 1
(BC020211) Homo sapiens cleavage and polyadenylation specifi... 48 0.77 1
(BC014106) Homo sapiens, Similar to cleavage and polyadenyla... 48 0.77 1
(BC011654) Homo sapiens cleavage and polyadenylation specifi... 48 0.77 1
(AK223487) Homo sapiens mRNA for cleavage and polyadenylatio... 48 0.77 1
(AK025440) Homo sapiens cDNA: FLJ21787 fis, clone HEP00329, ... 48 0.77 1
(AF171877) Homo sapiens cleavage and polyadenylation specifi... 48 0.77 1
(AF017269) Homo sapiens 73 kDA subunit of cleavage and polya... 48 0.77 1
(AC010462) Homo sapiens chromosome 5 clone CTD-2276M2, compl... 48 0.77 1
(AC044796) Homo sapiens chromosome 5 clone RP11-137D13, WORK... 48 0.77 1
(AC200933) Strongylocentrotus purpuratus clone R3-1022I21, W... 48 0.77 1
(AC181473) Strongylocentrotus purpuratus clone R3-51H1, WORK... 48 0.77 1
(AC181302) Strongylocentrotus purpuratus clone R3-115H16, WO... 48 0.77 1
(CR861432) Pongo abelii mRNA; cDNA DKFZp459J042 (from clone ... 48 0.77 1
(AK213227) Mus musculus cDNA, clone:Y2G0127K07, strand:plus,... 48 0.77 1
(AK171838) Mus musculus activated spleen cDNA, RIKEN full-le... 48 0.77 1
(AK170842) Mus musculus NOD-derived CD11c +ve dendritic cell... 48 0.77 1
(AK158036) Mus musculus adult inner ear cDNA, RIKEN full-len... 48 0.77 1
(AK157205) Mus musculus activated spleen cDNA, RIKEN full-le... 48 0.77 1
(AK149953) Mus musculus bone marrow macrophage cDNA, RIKEN f... 48 0.77 1
(AK010566) Mus musculus ES cells cDNA, RIKEN full-length enr... 48 0.77 1
(AY404969) Mus musculus CPSF3 gene, VIRTUAL TRANSCRIPT, part... 48 0.77 1
(AY404967) Homo sapiens CPSF3 gene, VIRTUAL TRANSCRIPT, part... 48 0.77 1
(FH052220) CHO_OF3328xg03f1.ab1 CHO_OF3 Nicotiana tabacum ge... 48 0.77 1
(EG709111) nbm12d03.y1 Cow lens. Unnormalized (nbm) Bos taur... 48 0.77 1
(EE784571) 020502OMGB21032070HT OMGB2 Ovis aries cDNA, mRNA ... 48 0.77 1
(AV443070) Mus musculus cDNA, Abe mouse ES cell cDNA library... 48 0.77 1
(DY403625) LMUT0467S Snake Lachesis muta cDNA library LMA La... 48 0.77 1
(DY119040) 001003BEMN033131HT BEMN Bos taurus cDNA 5', mRNA ... 48 0.77 1
(DV930956) LB03021.CR_E17 GC_BGC-30 Bos taurus cDNA clone IM... 48 0.77 1
(DV885957) LB0269.CR_N19 GC_BGC-26 Bos taurus cDNA clone IMA... 48 0.77 1
(DV818456) LB01726.CR_B09 GC_BGC-17 Bos taurus cDNA clone IM... 48 0.77 1
(DV769818) ILLUMIGEN_MCQ_68866 Katze_MMTE Macaca mulatta cDN... 48 0.77 1
(DT929416) BMSB13034 Hematopoietic stem cells Mus musculus c... 48 0.77 1
>(AC116986) Dictyostelium discoideum chromosome 2 map 2234041-2567370
strain AX4, complete sequence.
Length = 333321
Score = 1459 bits (736), Expect = 0.0
Identities = 736/736 (100%)
Strand = Plus / Plus
Query: 1 gttatagtgttgaaggtacccttgccaaacatatcatgtctgaacctgccgaaatcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197408 gttatagtgttgaaggtacccttgccaaacatatcatgtctgaacctgccgaaatcacac 197467
Query: 61 gtctcgataatgttaatgtacctttgaatctaacggttagctatgtttcatttagtgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197468 gtctcgataatgttaatgtacctttgaatctaacggttagctatgtttcatttagtgccc 197527
Query: 121 attcagatttcttacaaaccagcgaattcattcaagagattcaaccaccacatgtagtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197528 attcagatttcttacaaaccagcgaattcattcaagagattcaaccaccacatgtagtat 197587
Query: 181 tggtacatggtgatgcgaatgaaatgtcacgtttacgtcaatcattagtggctaaattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197588 tggtacatggtgatgcgaatgaaatgtcacgtttacgtcaatcattagtggctaaattta 197647
Query: 241 aaacaatcaatgttttaacaccaaagaatgcaatgagtgtagcattagagtttagacctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197648 aaacaatcaatgttttaacaccaaagaatgcaatgagtgtagcattagagtttagacctg 197707
Query: 301 aaaaagttgcaaaaacattaggttcaatcattacaaatccaccaaaacaaaatgatatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197708 aaaaagttgcaaaaacattaggttcaatcattacaaatccaccaaaacaaaatgatatca 197767
Query: 361 ttcaaggtattttagttacaaaagatttcactcatcatatactttcagcttcagatattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197768 ttcaaggtattttagttacaaaagatttcactcatcatatactttcagcttcagatattc 197827
Query: 421 ataattatacaaatttaaaaacaaacataatcaaacaaaaactcactttaccttttgctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197828 ataattatacaaatttaaaaacaaacataatcaaacaaaaactcactttaccttttgctc 197887
Query: 481 aaacttatcatattttaatttcaactttagaacaaatttatgaacaaattatagaatcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197888 aaacttatcatattttaatttcaactttagaacaaatttatgaacaaattatagaatcaa 197947
Query: 541 cggaatcaactggtggtggtggtaatgaaaaaccaacaattacaatttataatgaaatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197948 cggaatcaactggtggtggtggtaatgaaaaaccaacaattacaatttataatgaaatta 198007
Query: 601 aattaatttataatattggtgtttcaattatattagaatggaattcaaatactgttaatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198008 aattaatttataatattggtgtttcaattatattagaatggaattcaaatactgttaatg 198067
Query: 661 atatgatttgtgattcgatcattgctttaatctcacaaattgaattaaatccattaagta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198068 atatgatttgtgattcgatcattgctttaatctcacaaattgaattaaatccattaagta 198127
Query: 721 ttaaagttagaaatcc 736
||||||||||||||||
Sbjct: 198128 ttaaagttagaaatcc 198143
Score = 396 bits (200), Expect(2) = e-112
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 845 aattcaaataaaagttgttagtagaaaatctagaaaactttcaaataaattaaatacaat 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198252 aattcaaataaaagttgttagtagaaaatctagaaaactttcaaataaattaaatacaat 198311
Query: 905 tacagaagtaaaattattattggaacaacaatatggtaattttaaagtagatgaaaatga 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198312 tacagaagtaaaattattattggaacaacaatatggtaattttaaagtagatgaaaatga 198371
Query: 965 tccattaattttacattttaatttagataatcaaaaagcaatcattcatttagaaacttt 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198372 tccattaattttacattttaatttagataatcaaaaagcaatcattcatttagaaacttt 198431
Query: 1025 aacagttgaatctttagatc 1044
||||||||||||||||||||
Sbjct: 198432 aacagttgaatctttagatc 198451
Score = 44.1 bits (22), Expect(2) = e-112
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1081 gaatcattttatcagtttctcc 1102
||||||||||||||||||||||
Sbjct: 198488 gaatcattttatcagtttctcc 198509
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,325,632,699
Number of extensions: 88081877
Number of successful extensions: 8367469
Number of sequences better than 10.0: 283
Length of query: 1199
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1175
Effective length of database: 97,308,875,965
Effective search space: 114337929258875
Effective search space used: 114337929258875
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 4 |
| Homology vs Protein |
Query= Contig-U12657-1 (Contig-U12657-1Q) /CSM_Contig/Contig-U12657-1Q.Seq.d
(1199 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC085402_1(BC085402|pid:none) Danio rerio cleavage and polyadeny... 212 2e-53
(Q9UKF6) RecName: Full=Cleavage and polyadenylation specificity ... 208 3e-52
AB168921_1(AB168921|pid:none) Macaca fascicularis testis cDNA, c... 208 3e-52
CR861432_1(CR861432|pid:none) Pongo abelii mRNA; cDNA DKFZp459J0... 208 3e-52
AK157205_1(AK157205|pid:none) Mus musculus activated spleen cDNA... 207 5e-52
AK170842_1(AK170842|pid:none) Mus musculus NOD-derived CD11c +ve... 207 5e-52
AK298918_1(AK298918|pid:none) Homo sapiens cDNA FLJ57562 complet... 207 8e-52
AK010566_1(AK010566|pid:none) Mus musculus ES cells cDNA, RIKEN ... 206 1e-51
AK149953_1(AK149953|pid:none) Mus musculus bone marrow macrophag... 206 1e-51
BC023297_1(BC023297|pid:none) Mus musculus cleavage and polyaden... 206 1e-51
(Q9QXK7) RecName: Full=Cleavage and polyadenylation specificity ... 201 3e-50
BT044819_1(BT044819|pid:none) Salmo salar clone ssal-rgf-504-252... 200 7e-50
BC084286_1(BC084286|pid:none) Xenopus laevis hypothetical LOC495... 200 1e-49
BC075564_1(BC075564|pid:none) Xenopus tropicalis cleavage and po... 199 2e-49
CR761773_1(CR761773|pid:none) Xenopus tropicalis finished cDNA, ... 199 2e-49
AC018908_15(AC018908|pid:none) Arabidopsis thaliana chromosome 1... 194 5e-48
AC096688_31(AC096688|pid:none) Oryza sativa chromosome 3 BAC OSJ... 193 9e-48
BT055290_1(BT055290|pid:none) Zea mays full-length cDNA clone ZM... 186 1e-45
(Q4PEJ3) RecName: Full=Endoribonuclease YSH1; EC=3.1.27... 177 9e-43
AE014297_2649(AE014297|pid:none) Drosophila melanogaster chromos... 172 2e-41
(Q5KCZ0) RecName: Full=Endoribonuclease YSH1; EC=3.1.27... 172 3e-41
CP001576_344(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 161 5e-38
CR954209_224(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 142 2e-32
BC100569_1(BC100569|pid:none) Mus musculus cleavage and polyaden... 127 1e-27
(Q6C2Z7) RecName: Full=Endoribonuclease YSH1; EC=3.1.27... 124 5e-27
(Q4IPN9) RecName: Full=Endoribonuclease YSH1; EC=3.1.27... 117 1e-24
AP007151_864(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 116 2e-24
AC091702_11(AC091702|pid:none) Trypanosoma brucei chromosome 4 c... 114 7e-24
(Q5BEP0) RecName: Full=Endoribonuclease ysh1; EC=3.1.27... 110 1e-22
(Q6FUA5) RecName: Full=Endoribonuclease YSH1; EC=3.1.27... 105 2e-21
AY669073_1(AY669073|pid:none) Trypanosoma cruzi cleavage polyade... 103 9e-21
AL590449_89(AL590449|pid:none) chromosome X of strain GB-M1 of E... 100 1e-19
AY813346_1(AY813346|pid:none) Schistosoma japonicum SJCHGC07243 ... 86 3e-15
CP000499_477(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 86 3e-15
AE014187_362(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 84 1e-14
AK045238_1(AK045238|pid:none) Mus musculus 9.5 days embryo parth... 82 4e-14
AM910994_678(AM910994|pid:none) Plasmodium knowlesi strain H chr... 82 5e-14
BX248136_3(BX248136|pid:none) Zebrafish DNA sequence from clone ... 64 8e-09
(Q2YDM2) RecName: Full=Integrator complex subunit 11; S... 64 1e-08
BT030671_1(BT030671|pid:none) Bos taurus cleavage and polyadenyl... 64 1e-08
AL670236_20(AL670236|pid:none) Mouse DNA sequence from clone RP2... 63 2e-08
BC011155_1(BC011155|pid:none) Mus musculus cleavage and polyaden... 63 2e-08
AK167607_1(AK167607|pid:none) Mus musculus 12 days pregnant adul... 63 2e-08
(Q9CWS4) RecName: Full=Integrator complex subunit 11; S... 63 2e-08
BC008240_1(BC008240|pid:none) Mus musculus cleavage and polyaden... 63 2e-08
BC013904_1(BC013904|pid:none) Homo sapiens cleavage and polyaden... 61 9e-08
AB463529_1(AB463529|pid:none) Synthetic construct DNA, clone: pF... 61 9e-08
BC000675_1(BC000675|pid:none) Homo sapiens cleavage and polyaden... 61 9e-08
(Q9BW36) RecName: Full=Integrator complex subunit 11; S... 61 9e-08
AK297350_1(AK297350|pid:none) Homo sapiens cDNA FLJ55759 complet... 61 9e-08
AK021939_1(AK021939|pid:none) Homo sapiens cDNA FLJ11877 fis, cl... 61 9e-08
Z48334_2(Z48334|pid:none) Caenorhabditis elegans Cosmid F10B5, c... 59 3e-07
CR926113_1(CR926113|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 59 3e-07
T20694(T20694)hypothetical protein F10B5.8 - Caenorhabditis eleg... 57 1e-06
CR857385_1(CR857385|pid:none) Pongo abelii mRNA; cDNA DKFZp469C1... 57 2e-06
FN357545_3(FN357545|pid:none) Schistosoma mansoni genome sequenc... 55 4e-06
CP000505_308(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 51 9e-05
AK004317_1(AK004317|pid:none) Mus musculus 18-day embryo whole b... 49 4e-04
AL844502_181(AL844502|pid:none) Plasmodium falciparum 3D7 chromo... 48 6e-04
AP005577_16(AP005577|pid:none) Oryza sativa Japonica Group genom... 48 8e-04
CR940352_151(CR940352|pid:none) Theileria annulata strain Ankara... 47 0.001
AL590449_134(AL590449|pid:none) chromosome X of strain GB-M1 of ... 47 0.002
AK221561_1(AK221561|pid:none) Arabidopsis thaliana mRNA for puta... 45 0.004
CP000561_30(CP000561|pid:none) Pyrobaculum calidifontis JCM 1154... 45 0.005
CP000504_1094(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 45 0.005
CR954209_223(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 45 0.005
AE009441_562(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,... 44 0.009
CP000877_32(CP000877|pid:none) Herpetosiphon aurantiacus ATCC 23... 44 0.011
AY596297_1159(AY596297|pid:none) Haloarcula marismortui ATCC 430... 44 0.011
BT053623_1(BT053623|pid:none) Medicago truncatula clone MTYFT1G-... 44 0.011
AE017199_76(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, com... 44 0.015
CP000852_446(CP000852|pid:none) Caldivirga maquilingensis IC-167... 43 0.019
CP000660_64(CP000660|pid:none) Pyrobaculum arsenaticum DSM 13514... 42 0.033
CP000860_1359(CP000860|pid:none) Candidatus Desulforudis audaxvi... 42 0.043
AM114193_794(AM114193|pid:none) Uncultured methanogenic archaeon... 42 0.057
CR954201_248(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 41 0.074
CP000254_816(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 41 0.074
CP001338_743(CP001338|pid:none) Candidatus Methanosphaerula palu... 41 0.096
BA000011_437(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 40 0.13
A99225(A99225) mRNA 3'-end processing factor, probable [imported... 40 0.13
CP000142_716(CP000142|pid:none) Pelobacter carbinolicus DSM 2380... 40 0.16
AE017261_943(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 40 0.16
CP000867_1279(CP000867|pid:none) Methanococcus maripaludis C6, c... 40 0.21
BX950229_1381(BX950229|pid:none) Methanococcus maripaludis strai... 40 0.21
CP000745_620(CP000745|pid:none) Methanococcus maripaludis C7, co... 40 0.21
CP000609_196(CP000609|pid:none) Methanococcus maripaludis C5, co... 40 0.21
BA000039_1154(BA000039|pid:none) Thermosynechococcus elongatus B... 39 0.28
BT059180_1(BT059180|pid:none) Salmo salar clone ssal-rgf-530-370... 39 0.28
CP001399_1330(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 39 0.28
CP001403_1348(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 39 0.28
CP001400_1243(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 39 0.28
CP000780_1379(CP000780|pid:none) Candidatus Methanoregula boonei... 39 0.37
CP000968_1397(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 39 0.37
CP000493_1508(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 39 0.48
CP001634_1375(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, c... 39 0.48
(Q57626) RecName: Full=Uncharacterized protein MJ0162; &C64320(... 39 0.48
CP000743_1032(CP000743|pid:none) Methanococcus aeolicus Nankai-3... 38 0.62
CP000742_1397(CP000742|pid:none) Methanococcus vannielii SB, com... 38 0.82
CP000724_759(CP000724|pid:none) Alkaliphilus metalliredigens QYM... 37 1.4
CP000975_268(CP000975|pid:none) Methylacidiphilum infernorum V4,... 37 1.8
CP000866_1723(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 37 1.8
CP000855_1116(CP000855|pid:none) Thermococcus onnurineus NA1, co... 36 3.1
EU016611_44(EU016611|pid:none) Uncultured Group I marine crenarc... 36 3.1
CP001132_2243(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 36 3.1
AP009049_2585(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 35 4.1
AE015927_128(AE015927|pid:none) Clostridium tetani E88, complete... 35 4.1
AE008384_695(AE008384|pid:none) Methanosarcina mazei strain Goe1... 35 6.9
CP000568_2832(CP000568|pid:none) Clostridium thermocellum ATCC 2... 35 6.9
CP001114_2464(CP001114|pid:none) Deinococcus deserti VCD115, com... 35 6.9
AE010299_3771(AE010299|pid:none) Methanosarcina acetivorans str.... 35 6.9
AP006878_1154(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 35 6.9
CP001071_1850(CP001071|pid:none) Akkermansia muciniphila ATCC BA... 34 9.0
BA000011_663(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 34 9.0
AM180088_126(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 ... 34 9.0
AF325155_120(AF325155|pid:none) Spodoptera litura nucleopolyhedr... 34 9.0
>BC085402_1(BC085402|pid:none) Danio rerio cleavage and
polyadenylation specific factor 3, mRNA (cDNA clone
MGC:101655 IMAGE:7226347), complete cds.
&BC164567_1(BC164567|pid:none)
&BX248136_2(BX248136|pid:none)
Length = 690
Score = 212 bits (540), Expect = 2e-53
Identities = 125/378 (33%), Positives = 202/378 (53%), Gaps = 10/378 (2%)
Frame = +3
Query: 3 YSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQTSEFIQEIQPPHVVL 182
Y VEGTLAKHIMSEP EIT + +PL ++V Y+SFSAH+D+ QTSEFI+ ++PPHV+L
Sbjct: 364 YCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVIL 423
Query: 183 VHGDANEMSRLRQSLVAKFKT-----INVLTPKNAMSVALEFRPEKVAKTLGSIITNPPK 347
VHG+ NEM+RL+ +L+ +++ I V P+N +V L FR EK+AK +GS+
Sbjct: 424 VHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCS 483
Query: 348 QNDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKLTLPFAQTYHILISTLEQIYEQ 527
Q + GILV K+F++HILS SD+ NYT+L + +KQ +PF + +L+S L +
Sbjct: 484 QGQRVSGILVKKNFSYHILSPSDLSNYTDLAMSTVKQTQAIPFTGPFPLLLSQLRHL--- 540
Query: 528 XXXXXXXXXXXXNEKPTITIYNEIKLIYNIGVSIILEWNSNTVNDMICDSIIALISQIEL 707
+EK T+ ++N I +I+ + ++LEW +N +NDM D++ ++ +++
Sbjct: 541 ---TGDVEEIEMSEKSTVKVFNSITVIHENNL-VVLEWFANPLNDMYADAVTTVVLEVQS 596
Query: 708 NPLSIKVRNPNFNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSRKSRKLS 887
NP + K P + +K+
Sbjct: 597 NPKAQKALQP--------------------------------------------QEKKVD 612
Query: 888 NKLNTITEVKLLLEQQYGNFKVDENDPLILHFNLDNQKAIIHLETLTVE-----SLDQIL 1052
+ +K+ + +G VD D L N+D + A I LET TVE D L
Sbjct: 613 VNVFQNRLLKM-FQDMFGEECVDFKDKNCLAVNVDEKTAFIDLETRTVEYEEPNPEDDSL 671
Query: 1053 KQKIENSIKRIILSVSPI 1106
++ +E +++R+ +++P+
Sbjct: 672 REMLELAVQRLYEAINPV 689
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,303,571,723
Number of extensions: 20579743
Number of successful extensions: 57408
Number of sequences better than 10.0: 115
Number of HSP's gapped: 57311
Number of HSP's successfully gapped: 127
Length of query: 399
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 268
Effective length of database: 627,191,635
Effective search space: 168087358180
Effective search space used: 168087358180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
5 |
| VF (FL, S) |
2 |
| AH (FL, L) |
4 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |