Contig-U12635-1
Contig ID Contig-U12635-1
Contig update 2002.12.18
Contig sequence
>Contig-U12635-1 (Contig-U12635-1Q) /CSM_Contig/Contig-U12635-1Q.Seq.d
ATTTATACCGAAATTTAGAGGATTACACTCAAAAATATCCAGATATTGTT
GCAAATGTTACTAAATTCGTTGGGCCAAATGTGAAATCATTCATTTTAGA
TTGTGAAGCAGTTGCATTTGATGCTGCAACAAAAAAGATTTTATCATTTC
AAGTTTTATCGACTAGAGCAAGAAAAAGTGTACAATTGTCACAAATTAAA
GTACCAGTTTGTGTATTTGCTTTCGATTTACTCTATTTGAATGGTCAATC
ATTAATTGATGAACCATTAATCAAACGTCGTGAACATTTAGTTGAAAATT
TCATTGCATCCGATGGTGTATTTGCTTTTGCTAAATATTCAAATATTTCC
GACGTAAATGATATTCAATCCTATCTTGAAGAGGCTGTCGAGGGTAATTG
TGAAGGTTTAATGGTGAAAACTTTGAAAGAGAAATCAATCTATGAACCAT
CACGTCGTTCTTACAATTGGTTAAAGATTAAAAAAAGATTATATGCAAGG
TATGACCGATAGTTTAGATTTGGTACCCATTGGTGCATGGTATGGTAAAG
GTAAAAGAACAGGTACTTATGGTGCTTACTTGTTGGCTTGTTATGATGAA
AACAATGAAGAATTCCAAACACTCTGTAAGATTGGTACTGGTTTCTCTGA
TGAACAATTGACTACTTTTACCAGTCAATTGAAACCTCATCTAATTAATC
AACCACGTAATCAATTCCGTTTCTCTGATTCAATTAAACCTGATGTTTGG
TTCTCTCCAAGTTGTGTTTGGGAGGTATTGGCCGCTGATTTATCAATCTC
TCCAGTTCATACAGCTGCATCTGGTATTTTGGATCCAAATAAAGGTATCG
CTTTACGTTTCCCACGTTTCATTAGAATTCGTCCTGATAAATCTCCTGAA
GATGCAACTAGTTCTGATCAAGTTGTAGATATGTATCAAAATCAAAAAAT
TAAAAGTCAATCTTCAAAAATTAATGAAGAAGATGATGAGAAAAATTAGA
AGATATNATGAGGAAGAATANAAGAAGAAGAAGAAGAAGNANAAGNAGGG
AATTAGTAAA

Gap no gap
Contig length 1060
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4383406
End point 4382418
Strand (PLUS/MINUS) MINUS
Number of clones 8
Number of EST 8
Link to clone list U12635
List of clone(s)

est1=CFE475F,1,550
est2=AHD760Z,195,980
est3=AHM654Z,241,981
est4=AHM362Z,245,981
est5=CHR561Z,279,974
est6=SHB326Z,434,821
est7=CHM678Z,495,633
est8=AHA838Z,740,1060
Translated Amino Acid sequence
iytei*ritlkniqillqmllnslgqm*nhsf*ivkqlhlmlqqkrfyhfkfyrleqekv
ynchklkyqfvyllsiysi*mvnh*lmnh*snvvni*lkislhpmvyllllniqifpt*m
ifnpilkrlsrvivkv*w*kl*krnqsmnhhvvltig*RLKKDYMQGMTDSLDLVPIGAW
YGKGKRTGTYGAYLLACYDENNEEFQTLCKIGTGFSDEQLTTFTSQLKPHLINQPRNQFR
FSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILDPNKGIALRFPRFIRIRPDKSPE
DATSSDQVVDMYQNQKIKSQSSKINEEDDEKN*kix*grixeeeeexxxgn**


Translated Amino Acid sequence (All Frames)
Frame A:
iytei*ritlkniqillqmllnslgqm*nhsf*ivkqlhlmlqqkrfyhfkfyrleqekv
ynchklkyqfvyllsiysi*mvnh*lmnh*snvvni*lkislhpmvyllllniqifpt*m
ifnpilkrlsrvivkv*w*kl*krnqsmnhhvvltig*RLKKDYMQGMTDSLDLVPIGAW
YGKGKRTGTYGAYLLACYDENNEEFQTLCKIGTGFSDEQLTTFTSQLKPHLINQPRNQFR
FSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILDPNKGIALRFPRFIRIRPDKSPE
DATSSDQVVDMYQNQKIKSQSSKINEEDDEKN*kix*grixeeeeexxxgn**


Frame B:
fipkfrglhskisrycckcy*irwakceiihfrl*ssci*ccnkkdfiissfid*skkkc
tivtn*stslcicfrftlfewsiin**tinqts*tfs*kfhcirwcicfc*ifkyfrrk*
ysils*rgcrg*l*rfngenfereinl*titsflqlvkd*kkiickv*piv*iwyplvhg
mvkvkeqvlmvltcwlvmmktmknskhsvrlvlvslmnn*lllpvn*nli*linhvinsv
sliqlnlmfgslqvvfgrywpliyqslqfiqlhlvfwiqikvslyvshvslefvlinllk
mqlvlikl*icikikklkvnlqklmkkmmrkirryxeeexkkkkkkxkxgisk


Frame C:
lyrnledytqkypdivanvtkfvgpnvksfildceavafdaatkkilsfqvlstrarksv
qlsqikvpvcvfafdllylngqslideplikrrehlvenfiasdgvfafakysnisdvnd
iqsyleeavegnceglmvktlkeksiyepsrrsynwlkikkrlyarydr*frfgthwcmv
w*r*knrylwcllvgll**kq*ripntl*dwywfl**tidyfyqsietssn*stt*sipf
l*fn*t*clvlsklclggigr*finlsssysciwyfgsk*ryrftfptfh*nss**is*r
cn*f*sscryvskskn*ksifkn**rr**ekledxmrknxrrrrrxxxrelv


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12635-1 (Contig-U12635-1Q)
/CSM_Contig/Contig-U12635-1Q.Seq.d
(1060 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12635-1 (Contig-U12635-1Q) /CSM_Contig/Conti... 1810 0.0
Contig-U10817-1 (Contig-U10817-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U10683-1 (Contig-U10683-1Q) /CSM_Contig/Conti... 38 0.019
Contig-U08437-1 (Contig-U08437-1Q) /CSM_Contig/Conti... 38 0.019
Contig-U11421-1 (Contig-U11421-1Q) /CSM_Contig/Conti... 36 0.075
Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Conti... 36 0.075
Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Conti... 36 0.075
Contig-U09815-1 (Contig-U09815-1Q) /CSM_Contig/Conti... 36 0.075
Contig-U04777-1 (Contig-U04777-1Q) /CSM_Contig/Conti... 36 0.075
Contig-U04172-1 (Contig-U04172-1Q) /CSM_Contig/Conti... 36 0.075

>Contig-U12635-1 (Contig-U12635-1Q) /CSM_Contig/Contig-U12635-1Q.Seq.d
Length = 1060

Score = 1810 bits (913), Expect = 0.0
Identities = 927/934 (99%)
Strand = Plus / Plus


Query: 1 atttataccgaaatttagaggattacactcaaaaatatccagatattgttgcaaatgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttataccgaaatttagaggattacactcaaaaatatccagatattgttgcaaatgtta 60


Query: 61 ctaaattcgttgggccaaatgtgaaatcattcattttagattgtgaagcagttgcatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaaattcgttgggccaaatgtgaaatcattcattttagattgtgaagcagttgcatttg 120


Query: 121 atgctgcaacaaaaaagattttatcatttcaagttttatcgactagagcaagaaaaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgctgcaacaaaaaagattttatcatttcaagttttatcgactagagcaagaaaaagtg 180


Query: 181 tacaattgtcacaaattaaagtaccagtttgtgtatttgctttcgatttactctatttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacaattgtcacaaattaaagtaccagtttgtgtatttgctttcgatttactctatttga 240


Query: 241 atggtcaatcattaattgatgaaccattaatcaaacgtcgtgaacatttagttgaaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggtcaatcattaattgatgaaccattaatcaaacgtcgtgaacatttagttgaaaatt 300


Query: 301 tcattgcatccgatggtgtatttgcttttgctaaatattcaaatatttccgacgtaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcattgcatccgatggtgtatttgcttttgctaaatattcaaatatttccgacgtaaatg 360


Query: 361 atattcaatcctatcttgaagaggctgtcgagggtaattgtgaaggtttaatggtgaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atattcaatcctatcttgaagaggctgtcgagggtaattgtgaaggtttaatggtgaaaa 420


Query: 421 ctttgaaagagaaatcaatctatgaaccatcacgtcgttcttacaattggttaaagattn 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctttgaaagagaaatcaatctatgaaccatcacgtcgttcttacaattggttaaagatta 480


Query: 481 nnnnnngattatatgcaaggtatgaccgatagtttagatttggtacccattggtgcatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaaaagattatatgcaaggtatgaccgatagtttagatttggtacccattggtgcatgg 540


Query: 541 tatggtaaaggtaaaagaacaggtacttatggtgcttacttgttggcttgttatgatgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatggtaaaggtaaaagaacaggtacttatggtgcttacttgttggcttgttatgatgaa 600


Query: 601 aacaatgaagaattccaaacactctgtaagattggtactggtttctctgatgaacaattg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aacaatgaagaattccaaacactctgtaagattggtactggtttctctgatgaacaattg 660


Query: 661 actacttttaccagtcaattgaaacctcatctaattaatcaaccacgtaatcaattccgt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 actacttttaccagtcaattgaaacctcatctaattaatcaaccacgtaatcaattccgt 720


Query: 721 ttctctgattcaattaaacctgatgtttggttctctccaagttgtgtttgggaggtattg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttctctgattcaattaaacctgatgtttggttctctccaagttgtgtttgggaggtattg 780


Query: 781 gccgctgatttatcaatctctccagttcatacagctgcatctggtattttggatccaaat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gccgctgatttatcaatctctccagttcatacagctgcatctggtattttggatccaaat 840


Query: 841 aaaggtatcgctttacgtttcccacgtttcattagaattcgtcctgataaatctcctgaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aaaggtatcgctttacgtttcccacgtttcattagaattcgtcctgataaatctcctgaa 900


Query: 901 gatgcaactagttctgatcaagttgtagatatgt 934
||||||||||||||||||||||||||||||||||
Sbjct: 901 gatgcaactagttctgatcaagttgtagatatgt 934


Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/42 (100%)
Strand = Plus / Plus


Query: 971 ttaatgaagaagatgatgagaaaaattagaagatatnatgag 1012
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ttaatgaagaagatgatgagaaaaattagaagatatnatgag 1012


Score = 30.2 bits (15), Expect = 4.6
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1043 aagnagggaattagtaaa 1060
||||||||||||||||||
Sbjct: 1043 aagnagggaattagtaaa 1060


>Contig-U10817-1 (Contig-U10817-1Q) /CSM_Contig/Contig-U10817-1Q.Seq.d
Length = 1969

Score = 40.1 bits (20), Expect = 0.005
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus


Query: 976 gaagaagatgatga-gaaaaattagaagatat 1006
|||||||||||||| |||||||||||| ||||
Sbjct: 1650 gaagaagatgatgatgaaaaattagaatatat 1681


Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 975 tgaagaagatgatga 989
|||||||||||||||
Sbjct: 519 tgaagaagatgatga 505


>Contig-U10683-1 (Contig-U10683-1Q) /CSM_Contig/Contig-U10683-1Q.Seq.d
Length = 1533

Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 720 tttctctgattcaattaaa 738
|||||||||||||||||||
Sbjct: 1025 tttctctgattcaattaaa 1043


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,065
Number of Sequences: 6905
Number of extensions: 10065
Number of successful extensions: 1120
Number of sequences better than 10.0: 146
length of query: 1060
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1044
effective length of database: 5,564,391
effective search space: 5809224204
effective search space used: 5809224204
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA
Query= Contig-U12635-1 (Contig-U12635-1Q) /CSM_Contig/Contig-U12635-1Q.Seq.d
(1060 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ361094) Dictyostelium discoideum cDNA clone:ddc9f20, 5' e... 950 0.0 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 932 0.0 2
(BJ386247) Dictyostelium discoideum cDNA clone:ddc57i15, 3' ... 890 0.0 2
(BJ355383) Dictyostelium discoideum cDNA clone:dda56k14, 3' ... 882 0.0 2
(BJ355066) Dictyostelium discoideum cDNA clone:dda55l15, 3' ... 882 0.0 2
(BJ350067) Dictyostelium discoideum cDNA clone:dda38h15, 3' ... 866 0.0 2
(BJ403786) Dictyostelium discoideum cDNA clone:dds26d07, 3' ... 595 0.0 2
(BJ348172) Dictyostelium discoideum cDNA clone:dda32l10, 3' ... 379 e-101 2
(BJ383993) Dictyostelium discoideum cDNA clone:ddc47k20, 3' ... 222 2e-53 1
(AR549484) Sequence 4615 from patent US 6747137. 42 2e-10 4
(ES387991) MUS04-K07.y1d-s SHGC-MUS Mytilus californianus cD... 50 2e-08 2
(EX812939) CBNA3215.rev CBNA Phycomyces blakesleeanus NRRL15... 48 3e-06 2
(EX850727) CBNC8635.rev CBNC Phycomyces blakesleeanus NRRL15... 48 3e-06 2
(CZ285829) cp43e06.r Candida parapsilosis Random Genomic Lib... 46 2e-04 2
(FK192166) XABT206034.g1 Gateway compatible cien cDNA librar... 48 7e-04 2
(FF704641) XABT112588.rev Gateway compatible cien cDNA libra... 48 7e-04 2
(DT459797) GH_ON38E09.r GH_ON Gossypium hirsutum cDNA clone ... 56 0.003 1
(AM571925) Paracentrotus lividus EST, clone MPMGp1173E18122Q... 56 0.003 1
(CO131357) GR__Eb43J20.r GR__Eb Gossypium raimondii cDNA clo... 56 0.003 1
(FC757482) CBBN10090.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 50 0.003 2
(ES548964) TH1005D05SP6 TH1 Tribolium castaneum cDNA, mRNA s... 54 0.004 2
(DT770287) 125590251 TH1 Tribolium castaneum cDNA clone 50M1... 52 0.044 1
(BI746156) rm23e03.y1 Meloidogyne arenaria egg pAMP1 v1 Chia... 36 0.15 3
(DW255380) UI-S-GB1-aam-d-10-0-UI.s1 UI-S-GB1 Euprymna scolo... 34 0.50 2
(EE147963) SiJWE11BEA Lausanne fire ant library Solenopsis i... 34 0.50 2
(AL512593) Human DNA sequence from clone RP11-508N12 on chro... 48 0.68 1
(AC225729) Echinops telfairi clone CH238-396C2, WORKING DRAF... 48 0.68 1
(AC213543) Echinops telfairi clone CH238-90F1, WORKING DRAFT... 48 0.68 1
(DQ127600) Emiliania huxleyi virus 163 clone combi237+89.seq... 34 1.8 2
(AY069960) Plasmodium falciparum DNA ligase 1 (Lig1) mRNA, c... 44 2.0 2
(AY161174) Plasmodium falciparum DNA ligase 1 precursor, gen... 44 2.1 2
(CU469566) Zebrafish DNA sequence from clone CH1073-155F18 i... 46 2.7 1
(ER312221) 1092343802710 Global-Ocean-Sampling_GS-34-01-01-1... 46 2.7 1
(EJ135880) 1092343601276 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.7 1
(CZ288889) cp60g10.r Candida parapsilosis Random Genomic Lib... 46 2.7 1
(CZ282498) cp24d10.f Candida parapsilosis Random Genomic Lib... 46 2.7 1
(FK043364) XABT96982.g1 Gateway compatible cien cDNA library... 40 5.9 2
(AL021573) Caenorhabditis elegans DNA *** SEQUENCING IN PROG... 38 6.1 6
(BW454143) Ciona intestinalis cDNA, clone:cijv004o22, 3'end,... 40 6.2 2
(BW454254) Ciona intestinalis cDNA, clone:cijv005e09, 3'end,... 40 6.3 2
(BW430275) Ciona intestinalis cDNA, clone:cijv005e09, 5'end,... 40 6.5 2
(BZ297347) CG3371.r1 Candida glabrata Random Genomic Library... 40 6.7 2
(FF773144) XABT74674.rev Gateway compatible cien cDNA librar... 40 6.8 2
(BW430169) Ciona intestinalis cDNA, clone:cijv004o22, 5'end,... 40 6.8 2
(BM901006) rc44a08.y1 Meloidogyne hapla egg pAMP1 v1 Meloido... 30 6.9 3
(FF772119) XABT74007.rev Gateway compatible cien cDNA librar... 40 6.9 2
(FK143988) XABT176307.g1 Gateway compatible cien cDNA librar... 40 7.1 2
(FF712975) XABT32810.rev Gateway compatible cien cDNA librar... 40 7.1 2
(FK045118) XABT114499.g1 Gateway compatible cien cDNA librar... 40 7.2 2
(FF710490) XABT31128.rev Gateway compatible cien cDNA librar... 40 7.3 2
(AV961991) Ciona intestinalis cDNA, clone:cicl04f23, 5' end,... 40 7.3 2
(FF726417) XABT42045.rev Gateway compatible cien cDNA librar... 40 7.4 2
(FK128371) XABT166876.g1 Gateway compatible cien cDNA librar... 40 7.4 2
(FF753163) XABT61043.rev Gateway compatible cien cDNA librar... 40 7.5 2
(FF707665) XABT28785.rev Gateway compatible cien cDNA librar... 40 7.5 2
(FK160895) XABT186765.g1 Gateway compatible cien cDNA librar... 40 7.5 2
(FF800095) XABT92812.rev Gateway compatible cien cDNA librar... 40 7.6 2
(FK160894) XABT186765.b1 Gateway compatible cien cDNA librar... 40 7.7 2
(FF850299) CBWU2165.g1 Yutaka Satou unpublished cDNA library... 40 7.7 2
(CC908984) t047h15ba.r1 TAMBT Bos taurus genomic clone t047h... 40 7.7 2
(FF943265) CBWU76347.g1 Yutaka Satou unpublished cDNA librar... 40 7.7 2
(CZ290054) cp67f12.f Candida parapsilosis Random Genomic Lib... 38 7.8 2
(FF974356) CBWU95834.g1 Yutaka Satou unpublished cDNA librar... 40 7.9 2
(BW406133) Ciona intestinalis cDNA, clone:ciem850h24, 3'end,... 40 7.9 2
(AV849940) Ciona intestinalis cDNA, clone:rcicl04f23, 3' end... 40 7.9 2
(CB336378) Tc016A05R Tribolium castaneum embryonic cDNA libr... 42 8.7 2

>(BJ361094) Dictyostelium discoideum cDNA clone:ddc9f20, 5' end,
single read.
Length = 549

Score = 950 bits (479), Expect(2) = 0.0
Identities = 479/479 (100%)
Strand = Plus / Plus


Query: 1 atttataccgaaatttagaggattacactcaaaaatatccagatattgttgcaaatgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttataccgaaatttagaggattacactcaaaaatatccagatattgttgcaaatgtta 60


Query: 61 ctaaattcgttgggccaaatgtgaaatcattcattttagattgtgaagcagttgcatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaaattcgttgggccaaatgtgaaatcattcattttagattgtgaagcagttgcatttg 120


Query: 121 atgctgcaacaaaaaagattttatcatttcaagttttatcgactagagcaagaaaaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgctgcaacaaaaaagattttatcatttcaagttttatcgactagagcaagaaaaagtg 180


Query: 181 tacaattgtcacaaattaaagtaccagtttgtgtatttgctttcgatttactctatttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacaattgtcacaaattaaagtaccagtttgtgtatttgctttcgatttactctatttga 240


Query: 241 atggtcaatcattaattgatgaaccattaatcaaacgtcgtgaacatttagttgaaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggtcaatcattaattgatgaaccattaatcaaacgtcgtgaacatttagttgaaaatt 300


Query: 301 tcattgcatccgatggtgtatttgcttttgctaaatattcaaatatttccgacgtaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcattgcatccgatggtgtatttgcttttgctaaatattcaaatatttccgacgtaaatg 360


Query: 361 atattcaatcctatcttgaagaggctgtcgagggtaattgtgaaggtttaatggtgaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atattcaatcctatcttgaagaggctgtcgagggtaattgtgaaggtttaatggtgaaaa 420


Query: 421 ctttgaaagagaaatcaatctatgaaccatcacgtcgttcttacaattggttaaagatt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctttgaaagagaaatcaatctatgaaccatcacgtcgttcttacaattggttaaagatt 479

Score = 127 bits (64), Expect(2) = 0.0
Identities = 64/64 (100%)
Strand = Plus / Plus


Query: 487 gattatatgcaaggtatgaccgatagtttagatttggtacccattggtgcatggtatggt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gattatatgcaaggtatgaccgatagtttagatttggtacccattggtgcatggtatggt 545


Query: 547 aaag 550
||||
Sbjct: 546 aaag 549

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,006,016,487
Number of extensions: 55356942
Number of successful extensions: 4214268
Number of sequences better than 10.0: 66
Length of query: 1060
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1036
Effective length of database: 97,308,875,965
Effective search space: 100811995499740
Effective search space used: 100811995499740
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 4
Homology vs Protein
Query= Contig-U12635-1 (Contig-U12635-1Q) /CSM_Contig/Contig-U12635-1Q.Seq.d
(1060 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BT068552_1(BT068552|pid:none) Zea mays full-length cDNA clone ZM... 235 e-105
(Q42572) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 223 e-103
AK222166_1(AK222166|pid:none) Arabidopsis thaliana mRNA for DNA ... 223 e-103
S71278(S71278) DNA ligase (ATP) (EC 6.5.1.1) - Arabidopsis thali... 222 e-103
CP000590_67(CP000590|pid:none) Ostreococcus lucimarinus CCE9901 ... 226 3e-99
(P51892) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 205 3e-97
BX005060_7(BX005060|pid:none) Zebrafish DNA sequence from clone ... 206 4e-96
AB072813_1(AB072813|pid:none) Coprinopsis cinerea mRNA for DNA l... 203 8e-96
(Q9W1H4) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 200 9e-95
AY051939_1(AY051939|pid:none) Drosophila melanogaster LD41868 fu... 200 9e-95
(P18858) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 189 9e-93
AK300607_1(AK300607|pid:none) Homo sapiens cDNA FLJ50685 complet... 187 3e-92
(P37913) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 190 4e-92
(P12000) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 197 4e-92
Z95334_1(Z95334|pid:none) S.pombe chromosome I cosmid c20G8. 197 4e-92
CP001323_748(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 217 5e-92
AK161793_1(AK161793|pid:none) Mus musculus 13 days embryo male t... 188 2e-91
FN357328_36(FN357328|pid:none) Schistosoma mansoni genome sequen... 207 2e-91
(Q9JHY8) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 187 5e-91
AC007863_3(AC007863|pid:none) Trypanosoma brucei chromosome 6 cl... 207 1e-90
FN357328_37(FN357328|pid:none) Schistosoma mansoni genome sequen... 207 6e-89
CR382132_42(CR382132|pid:none) Yarrowia lipolytica strain CLIB12... 175 3e-88
FN317154_1(FN317154|pid:none) Schistosoma japonicum isolate Anhu... 206 6e-88
CR380955_135(CR380955|pid:none) Candida glabrata strain CBS138 c... 200 4e-87
(P04819) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 197 3e-86
X03246_1(X03246|pid:none) Yeast CDC9 gene for DNA ligase. 197 3e-86
AM494967_348(AM494967|pid:none) Leishmania braziliensis chromoso... 203 9e-86
Z23078_1(Z23078|pid:none) Crithidia fasciculata LIG1 gene for DN... 199 2e-85
CU633900_875(CU633900|pid:none) Podospora anserina genomic DNA c... 169 1e-84
AP007171_676(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 169 4e-84
T19544(T19544)hypothetical protein C29A12.3 - Caenorhabditis ele... 185 2e-83
CR382124_521(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 184 2e-83
CP001141_201(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1... 186 7e-83
AC011438_1(AC011438|pid:none) Genomic sequence for Arabidopsis t... 193 1e-82
AC026875_23(AC026875|pid:none) Genomic sequence for Arabidopsis ... 191 6e-82
CP000496_490(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 175 8e-82
AM055943_105(AM055943|pid:none) Toxoplasma gondii RH, genomic DN... 189 1e-81
AM920431_1301(AM920431|pid:none) Penicillium chrysogenum Wiscons... 162 9e-81
CU928180_53(CU928180|pid:none) Kluyveromyces thermotolerans stra... 189 1e-80
FM992690_72(FM992690|pid:none) Candida dubliniensis CD36 chromos... 176 3e-80
CR954210_64(CR954210|pid:none) Ostreococcus tauri strain OTTH059... 162 7e-75
AL590442_120(AL590442|pid:none) chromosome II of strain GB-M1 of... 164 3e-73
AP008216_911(AP008216|pid:none) Oryza sativa (japonica cultivar-... 177 7e-69
EU952130_1(EU952130|pid:none) Zea mays clone 1168020 unknown mRNA. 159 8e-64
CP001140_276(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 166 4e-62
AE017261_672(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 158 3e-61
AY141199_3(AY141199|pid:none) Entamoeba histolytica putative end... 160 1e-60
(Q9HJ26) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 154 3e-59
CS051069_1(CS051069|pid:none) Sequence 1 from Patent EP1514938. ... 161 5e-59
(Q9YD18) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 161 5e-59
(Q979A1) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 152 5e-59
(A1RY72) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 155 9e-59
(A1RTK4) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 157 9e-59
AB208791_1(AB208791|pid:none) Homo sapiens mRNA for DNA ligase I... 176 1e-58
BC110622_1(BC110622|pid:none) Homo sapiens ligase I, DNA, ATP-de... 176 1e-58
(A8AB20) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 162 1e-58
(Q9P9K9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 152 1e-57
(A8MDU6) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 159 2e-57
CP001399_1947(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 151 2e-57
AJ850915_1(AJ850915|pid:none) Ferroplasma acidiphilum lig gene f... 142 4e-57
(A3MS62) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 157 5e-57
(Q980T8) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 150 1e-56
(O67398) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 148 3e-56
U82370_1(U82370|pid:none) Pyrobaculum aerophilum DNA ligase gene... 147 2e-55
(O93723) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 147 2e-55
(B1L3V2) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 137 1e-54
AP007155_578(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 119 2e-54
(A9A3K1) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 144 6e-54
EU513165_1(EU513165|pid:none) Pinus sylvestris putative DNA liga... 204 8e-54
(A4YD25) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 147 9e-53
(Q02093) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 140 1e-52
CP001324_855(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 150 1e-50
(Q976G4) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 140 1e-50
EU016614_18(EU016614|pid:none) Uncultured Group I marine crenarc... 133 3e-49
AF393466_37(AF393466|pid:none) Uncultured crenarchaeote 74A4 par... 141 7e-49
AM426351_2(AM426351|pid:none) Vitis vinifera contig VV78X092318.... 154 8e-45
CU367853_17(CU367853|pid:none) Complete fosmid clone containing ... 103 5e-43
X68020_1(X68020|pid:none) S.cerevisiae SFA and ARP genes. 176 2e-42
(B5YD88) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 99 1e-39
EU016672_1(EU016672|pid:none) Uncultured Group I marine crenarch... 133 4e-37
(Q9V185) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 99 7e-36
AK143531_1(AK143531|pid:none) Mus musculus 12 days embryo whole ... 94 5e-35
AL645594_8(AL645594|pid:none) Mouse DNA sequence from clone RP23... 94 5e-35
BC167946_1(BC167946|pid:none) Xenopus tropicalis cDNA clone MGC:... 90 5e-35
FJ713107_1(FJ713107|pid:none) Thermococcus sp. 1519 thermostable... 96 5e-35
BC068005_1(BC068005|pid:none) Homo sapiens ligase III, DNA, ATP-... 94 8e-35
(P49916) RecName: Full=DNA ligase 3; EC=6.5.1.1; AltNam... 94 8e-35
AF491645_1(AF491645|pid:none) Homo sapiens ligase III, DNA, ATP-... 94 8e-35
AK300363_1(AK300363|pid:none) Homo sapiens cDNA FLJ61710 complet... 94 8e-35
BC111207_1(BC111207|pid:none) Bos taurus ligase III, DNA, ATP-de... 93 1e-34
(O59288) RecName: Full=Probable thermostable DNA ligase; ... 95 2e-34
BC070993_1(BC070993|pid:none) Xenopus laevis DNA ligase III isof... 88 3e-34
(Q46BA3) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 87 1e-33
(Q8TMT1) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 84 1e-33
GM016257_44(GM016257|pid:none) Sequence 1087 from Patent EP19234... 99 1e-33
AB042527_1(AB042527|pid:none) Thermococcus kodakaraensis Tk-lig ... 99 1e-33
(Q8PTK1) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 84 2e-33
(Q9HH07) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 93 2e-33
AF393655_1(AF393655|pid:none) Xenopus laevis DNA ligase III isof... 88 4e-33
S41974(S41974) DNA ligase (ATP) (EC 6.5.1.1) - fowlpox virus &Z... 94 5e-33
(Q12X08) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 90 1e-32
(P97386) RecName: Full=DNA ligase 3; EC=6.5.1.1; AltNam... 84 4e-32
U66057_1(U66057|pid:none) Mus musculus DNA ligase III-beta mRNA,... 84 4e-32
CP000855_1522(CP000855|pid:none) Thermococcus onnurineus NA1, co... 94 4e-32
(A7IAA9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 95 1e-31
AY318871_61(AY318871|pid:none) Canarypox virus strain ATCC VR-11... 93 2e-31
U00761_1(U00761|pid:none) Rabbit fibroma virus ATP-dependent DNA... 90 1e-30
AF170722_137(AF170722|pid:none) Rabbit fibroma virus, complete g... 90 1e-30
(A0B7F9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 81 1e-30
AF482758_192(AF482758|pid:none) Cowpox virus strain Brighton Red... 90 2e-30
AF095689_210(AF095689|pid:none) Vaccinia virus (strain Tian Tan)... 90 2e-30
(P33798) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 87 2e-30
DQ441424_167(DQ441424|pid:none) Variola virus strain Ethiopia 19... 87 2e-30
AY678275_231(AY678275|pid:none) Vaccinia virus strain LC16m8, co... 89 3e-30
AY313847_184(AY313847|pid:none) Vaccinia virus strain Acambis cl... 89 3e-30
(O57250) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 89 3e-30
DQ439815_184(DQ439815|pid:none) Vaccinia virus strain DUKE, comp... 89 3e-30
DQ792504_194(DQ792504|pid:none) Horsepox virus isolate MNR-76, c... 89 3e-30
AM501482_184(AM501482|pid:none) Vaccinia virus Ankara strain cho... 89 3e-30
DQ121394_172(DQ121394|pid:none) Vaccinia virus strain Lister clo... 89 3e-30
AE000782_612(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,... 79 7e-30
DQ441434_170(DQ441434|pid:none) Variola virus strain Niger 1969 ... 87 7e-30
AF012825_149(AF012825|pid:none) Ectromelia virus strain Moscow, ... 90 9e-30
AY965319_1(AY965319|pid:none) Synthetic construct clone VACV-WR_... 87 1e-29
(P20492) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 87 1e-29
(P16272) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 87 1e-29
AY689436_142(AY689436|pid:none) Deerpox virus W-848-83, complete... 81 1e-29
AY603973_153(AY603973|pid:none) Monkeypox virus strain MPXV-WRAI... 87 1e-29
AF380138_160(AF380138|pid:none) Monkeypox virus strain Zaire-96-... 87 1e-29
X94355_175(X94355|pid:none) Cowpox virus strain GRI-90, complete... 87 1e-29
AF410153_130(AF410153|pid:none) Swinepox virus isolate 17077-99,... 84 2e-29
(A3CWP1) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 79 2e-27
CP001338_2640(CP001338|pid:none) Candidatus Methanosphaerula pal... 88 1e-26
CU633457_251(CU633457|pid:none) Podospora anserina genomic DNA c... 123 1e-26
CP001365_870(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 84 2e-26
AF409137_135(AF409137|pid:none) Lumpy skin disease virus NW-LW i... 77 7e-26
BC135341_1(BC135341|pid:none) Xenopus tropicalis ligase IV, DNA,... 71 9e-26
BC150236_1(BC150236|pid:none) Danio rerio zgc:165595, mRNA (cDNA... 73 2e-25
(B0R4C9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 84 3e-25
AM920428_937(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 117 5e-25
AF393656_1(AF393656|pid:none) Xenopus laevis DNA ligase IV mRNA,... 72 7e-25
BC098869_1(BC098869|pid:none) Danio rerio zgc:112973, mRNA (cDNA... 80 1e-24
(A2SR38) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 75 5e-24
(Q2FTH4) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 77 8e-24
(A8N936) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 67 2e-21
(Q7Z7W5) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 67 2e-21
AB269887_1(AB269887|pid:none) Populus nigra PnLig4 mRNA for DNA ... 70 3e-21
(B1L3K8) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 68 4e-21
BC141417_1(BC141417|pid:none) Synthetic construct Mus musculus c... 65 6e-21
AK148081_1(AK148081|pid:none) Mus musculus B16 F10Y cells cDNA, ... 65 6e-21
AK083353_1(AK083353|pid:none) Mus musculus 2 days neonate thymus... 65 6e-21
(P54875) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 73 1e-20
(A1RXA6) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 69 2e-20
CP001472_2520(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 63 2e-20
AB058600_1(AB058600|pid:none) Gallus gallus LIG4 gene for DNA li... 63 3e-20
(Q90YB1) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 63 3e-20
AK314844_1(AK314844|pid:none) Homo sapiens cDNA, FLJ95736, highl... 64 4e-20
(Q9LL84) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 71 6e-20
(Q2NHF9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 64 8e-20
(P49917) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 62 1e-19
AF479264_1(AF479264|pid:none) Homo sapiens ligase IV, DNA, ATP-d... 62 1e-19
AK292419_1(AK292419|pid:none) Homo sapiens cDNA FLJ75440 complet... 62 1e-19
(Q50566) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 64 8e-19
(Q2U6A1) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 62 1e-18
(O74833) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 60 1e-18
T40845(T40845)dna ligase - fission yeast (Schizosaccharomyces po... 60 1e-18
(Q4WVG8) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 66 4e-18
CR932223_1(CR932223|pid:none) DNA ligase IV, Paramecium tetraure... 63 5e-18
CR932222_1(CR932222|pid:none) DNA ligase IV, Paramecium tetraure... 63 5e-18
AM270049_7(AM270049|pid:none) Aspergillus niger contig An03c0080... 68 7e-18
AK156030_1(AK156030|pid:none) Mus musculus activated spleen cDNA... 94 1e-17
(Q57635) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 64 7e-17
AB023042_11(AB023042|pid:none) Arabidopsis thaliana genomic DNA,... 71 6e-16
FN357417_33(FN357417|pid:none) Schistosoma mansoni genome sequen... 62 8e-16
AK342216_1(AK342216|pid:none) Acyrthosiphon pisum ACYPI004007 mR... 87 1e-15
(Q9FCB1) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 59 5e-15
CP000685_1749(CP000685|pid:none) Flavobacterium johnsoniae UW101... 57 6e-15
(A1UDY9) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 60 1e-14
CP000576_784(CP000576|pid:none) Prochlorococcus marinus str. MIT... 61 3e-14
(B4UIS1) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 52 4e-14
(Q2IH69) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 52 5e-14
(Q7X7E9) RecName: Full=Putative DNA ligase 4; EC=6.5.1.... 73 6e-14
(Q826P6) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 60 9e-14
CP000551_782(CP000551|pid:none) Prochlorococcus marinus str. AS9... 59 1e-13
CP000474_270(CP000474|pid:none) Arthrobacter aurescens TC1, comp... 54 4e-13
(A4TDS2) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 54 4e-13
(A0QUP1) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 56 5e-13
(Q1DKE7) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 55 7e-13
(Q6FVD8) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 77 8e-13
CR954211_172(CR954211|pid:none) Ostreococcus tauri strain OTTH05... 55 9e-13
(Q75CA4) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 71 1e-12
AY119169_1(AY119169|pid:none) Drosophila melanogaster RH46576 fu... 58 2e-12
AE014298_2019(AE014298|pid:none) Drosophila melanogaster chromos... 58 2e-12
CP001124_126(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 62 3e-12
CP000591_166(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 59 4e-12
(A0QJL0) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 54 6e-12
CP000113_5923(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 52 7e-12
CP000157_2633(CP000157|pid:none) Erythrobacter litoralis HTCC259... 49 1e-11
(Q73V97) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 53 1e-11
AY229987_109(AY229987|pid:none) Cryptophlebia leucotreta granulo... 52 2e-11
BX548174_820(BX548174|pid:none) Prochlorococcus marinus MED4 com... 54 2e-11
CU928175_319(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 72 3e-11
(A9GU24) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 50 3e-11
(A0PTC0) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 51 3e-11
(A1T6P2) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 49 1e-10
(A4F870) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 51 1e-10
CP001618_271(CP001618|pid:none) Beutenbergia cavernae DSM 12333,... 55 2e-10
DQ889955_1(DQ889955|pid:none) Saccharomyces cariocanus strain 50... 69 3e-10
CP000656_1812(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 48 6e-10
CP000804_3360(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 47 8e-10
CP000384_4335(CP000384|pid:none) Mycobacterium sp. MCS, complete... 50 2e-09
CU928167_468(CU928167|pid:none) Kluyveromyces thermotolerans str... 66 2e-09
CP000580_4684(CP000580|pid:none) Mycobacterium sp. JLS, complete... 50 3e-09
CR382139_184(CR382139|pid:none) Debaryomyces hansenii strain CBS... 65 3e-09
(B1W5J2) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 52 4e-09
CP000454_294(CP000454|pid:none) Arthrobacter sp. FB24, complete ... 50 5e-09
CP000480_5382(CP000480|pid:none) Mycobacterium smegmatis str. MC... 45 5e-09
CP000927_4880(CP000927|pid:none) Caulobacter sp. K31, complete g... 46 5e-09
AC006605_8(AC006605|pid:none) Caenorhabditis elegans cosmid C07H... 65 5e-09
CP000712_2459(CP000712|pid:none) Pseudomonas putida F1, complete... 43 1e-08
AY787762_7(AY787762|pid:none) Streptomyces filamentosus strain N... 50 1e-08
FJ362359_5(FJ362359|pid:none) Caenorhabditis brenneri contig JD0... 64 1e-08
X95001_1(X95001|pid:none) Candida albicans LIG4 gene for ATP-dep... 63 2e-08
(P52496) RecName: Full=DNA ligase 4; Short=CaLIG4; ... 63 2e-08
S71741(S71741)DNA ligase (ATP) (EC 6.5.1.1) - yeast (Candida alb... 63 2e-08
BA000040_8031(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 54 2e-08
CP000094_2096(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 44 3e-08
CT573213_4285(CT573213|pid:none) Frankia alni str. ACN14A chromo... 49 4e-08
AB353135_1(AB353135|pid:none) Magnaporthe grisea MGLIG4 gene for... 62 4e-08
CP000685_3281(CP000685|pid:none) Flavobacterium johnsoniae UW101... 46 5e-08
(A1SKL2) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 51 1e-07
(A4FY19) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 60 2e-07
CU633900_506(CU633900|pid:none) Podospora anserina genomic DNA c... 60 2e-07
(Q18HT7) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 60 2e-07
CP001001_3640(CP001001|pid:none) Methylobacterium radiotolerans ... 41 2e-07
AE016958_1329(AE016958|pid:none) Mycobacterium avium subsp. para... 47 2e-07
CP000924_468(CP000924|pid:none) Thermoanaerobacter pseudethanoli... 52 2e-07
CP000431_15(CP000431|pid:none) Rhodococcus jostii RHA1, complete... 59 3e-07
AP006618_2953(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 59 3e-07
(A9AAX4) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 59 3e-07
AP011115_5112(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 40 3e-07
CP000383_2793(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 59 4e-07
CP000431_4993(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 39 4e-07
CP000552_858(CP000552|pid:none) Prochlorococcus marinus str. MIT... 45 4e-07
CP001074_1231(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 45 4e-07
BA000040_1144(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 42 5e-07
CP000496_206(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 57 8e-07
CP000612_1968(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 57 1e-06
(A6UNY0) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 57 1e-06
AF547984_103(AF547984|pid:none) Adoxophyes orana granulovirus, c... 42 1e-06
CP000304_2087(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 40 2e-06
CP001341_2554(CP001341|pid:none) Arthrobacter chlorophenolicus A... 47 2e-06
CP000473_7724(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 55 3e-06
CP000699_3951(CP000699|pid:none) Sphingomonas wittichii RW1, com... 55 3e-06
U53466_120(U53466|pid:none) Cydia pomonella granulovirus, comple... 44 3e-06
AL591688_2917(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 47 3e-06
AE016958_880(AE016958|pid:none) Mycobacterium avium subsp. parat... 47 4e-06
AP009493_6690(AP009493|pid:none) Streptomyces griseus subsp. gri... 40 6e-06
CP000143_1006(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 38 7e-06
CP000479_1008(CP000479|pid:none) Mycobacterium avium 104, comple... 46 9e-06
CP000232_1456(CP000232|pid:none) Moorella thermoacetica ATCC 390... 54 9e-06
AM743169_50(AM743169|pid:none) Stenotrophomonas maltophilia K279... 39 2e-05
CP001150_728(CP001150|pid:none) Rhodobacter sphaeroides KD131 ch... 37 2e-05
CP000137_251(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p4... 53 2e-05
CP000555_1518(CP000555|pid:none) Methylibium petroleiphilum PM1,... 44 2e-05
CP000577_1067(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 37 2e-05
BX908798_950(BX908798|pid:none) Parachlamydia-related symbiont U... 41 2e-05
(B1ZZL9) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 53 2e-05
CP000103_1171(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 43 7e-05
CP000383_3466(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 50 1e-04
AM181176_1280(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 50 1e-04
CP000075_3872(CP000075|pid:none) Pseudomonas syringae pv. syring... 42 1e-04
CP001390_329(CP001390|pid:none) Geobacter sp. FRC-32, complete g... 50 1e-04
CP000830_2573(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 49 2e-04
CP000264_2667(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 49 3e-04
CP000270_2104(CP000270|pid:none) Burkholderia xenovorans LB400 c... 36 3e-04
CP000360_779(CP000360|pid:none) Acidobacteria bacterium Ellin345... 49 4e-04
CP001074_1139(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 49 4e-04
AL591688_2752(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 49 4e-04
CP001349_1481(CP001349|pid:none) Methylobacterium nodulans ORS 2... 48 5e-04
CP001075_196(CP001075|pid:none) Rhizobium etli CIAT 652 plasmid ... 48 7e-04
CP000248_68(CP000248|pid:none) Novosphingobium aromaticivorans D... 48 7e-04
CP000356_287(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ... 48 7e-04
(O31917) RecName: Full=SPBc2 prophage-derived DNA ligase-like pr... 47 9e-04
CP001098_340(CP001098|pid:none) Halothermothrix orenii H 168, co... 47 9e-04
AP008931_104(AP008931|pid:none) Rhodococcus erythropolis PR4 pla... 47 9e-04
CP000739_719(CP000739|pid:none) Sinorhizobium medicae WSM419 pla... 45 0.001
EU414185_1(EU414185|pid:none) Pseudomonas sp. A21 ATP-dependent ... 44 0.001
CP000431_237(CP000431|pid:none) Rhodococcus jostii RHA1, complet... 47 0.001
AP011116_535(AP011116|pid:none) Rhodococcus opacus B4 plasmid pR... 47 0.001
BX842652_61(BX842652|pid:none) Bdellovibrio bacteriovorus comple... 47 0.001
AP011115_1344(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 47 0.001
CP001341_516(CP001341|pid:none) Arthrobacter chlorophenolicus A6... 47 0.001
AM236086_210(AM236086|pid:none) Rhizobium leguminosarum bv. vici... 47 0.001
EU686623_1(EU686623|pid:none) Uncultured marine crenarchaeote AD... 47 0.001
AE007872_51(AE007872|pid:none) Agrobacterium tumefaciens str. C5... 46 0.002
CP000738_2601(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 46 0.002
AE006469_229(AE006469|pid:none) Sinorhizobium meliloti 1021 plas... 46 0.002
AL591985_1404(AL591985|pid:none) Sinorhizobium meliloti 1021 pla... 43 0.002
CP000700_167(CP000700|pid:none) Sphingomonas wittichii RW1 plasm... 46 0.003
CP000518_850(CP000518|pid:none) Mycobacterium sp. KMS, complete ... 46 0.003
CP001280_1697(CP001280|pid:none) Methylocella silvestris BL2, co... 39 0.003
CP000133_1146(CP000133|pid:none) Rhizobium etli CFN 42, complete... 45 0.003
CP001348_362(CP001348|pid:none) Clostridium cellulolyticum H10, ... 45 0.004
CP000434_147(CP000434|pid:none) Rhodococcus jostii RHA1 plasmid ... 45 0.004
CP001096_865(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 45 0.004
AE016853_3385(AE016853|pid:none) Pseudomonas syringae pv. tomato... 33 0.006
AE015451_3233(AE015451|pid:none) Pseudomonas putida KT2440 compl... 44 0.007
CP000489_409(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 38 0.007
CP000075_3244(CP000075|pid:none) Pseudomonas syringae pv. syring... 36 0.009
CP000874_2018(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN... 39 0.009
CP001280_3027(CP001280|pid:none) Methylocella silvestris BL2, co... 44 0.010
CP001504_651(CP001504|pid:none) Burkholderia glumae BGR1 chromos... 44 0.010
CP000717_956(CP000717|pid:none) Mycobacterium tuberculosis F11, ... 44 0.013
(P59971) RecName: Full=Putative DNA ligase-like protein Mb0963; ... 44 0.013
AE007872_97(AE007872|pid:none) Agrobacterium tumefaciens str. C5... 44 0.013
CP000885_1710(CP000885|pid:none) Clostridium phytofermentans ISD... 44 0.013
(P71571) RecName: Full=Putative DNA ligase-like protein Rv0938/M... 44 0.013
AM236080_1303(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 44 0.013
CP001191_794(CP001191|pid:none) Rhizobium leguminosarum bv. trif... 43 0.016
CP000613_629(CP000613|pid:none) Rhodospirillum centenum SW, comp... 43 0.016
CP000362_1696(CP000362|pid:none) Roseobacter denitrificans OCh 1... 43 0.016
CP000448_1074(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 43 0.021
CP000781_1459(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 43 0.021
CP000271_1679(CP000271|pid:none) Burkholderia xenovorans LB400 c... 43 0.021
AE007869_823(AE007869|pid:none) Agrobacterium tumefaciens str. C... 43 0.021
F97461(F97461)DNA ligase (AB042527) [imported] - Agrobacterium t... 43 0.021
CP000744_3137(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 34 0.026
BA000012_4246(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 42 0.028
CP000301_743(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 42 0.028
CP000738_1295(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 42 0.036
CT573213_2047(CT573213|pid:none) Frankia alni str. ACN14A chromo... 42 0.036
CP000769_823(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 42 0.036
BA000040_5182(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 42 0.036
CP000908_3195(CP000908|pid:none) Methylobacterium extorquens PA1... 42 0.037
CP001196_1153(CP001196|pid:none) Oligotropha carboxidovorans OM5... 42 0.037
CP000463_721(CP000463|pid:none) Rhodopseudomonas palustris BisA5... 42 0.037
CP001510_3212(CP001510|pid:none) Methylobacterium extorquens AM1... 42 0.037
CP001298_3411(CP001298|pid:none) Methylobacterium chloromethanic... 42 0.037
AJ507836_161(AJ507836|pid:none) Arthrobacter nicotinovorans pAO1... 42 0.048
AM236085_119(AM236085|pid:none) Rhizobium leguminosarum bv. vici... 42 0.048
CP000860_561(CP000860|pid:none) Candidatus Desulforudis audaxvia... 42 0.048
AE015451_1096(AE015451|pid:none) Pseudomonas putida KT2440 compl... 42 0.048
CP000712_1129(CP000712|pid:none) Pseudomonas putida F1, complete... 42 0.048
AE017333_1404(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 41 0.062
CP001027_813(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch... 41 0.062
CU633751_83(CU633751|pid:none) Cupriavidus taiwanensis str. LMG1... 41 0.062
CP000304_2604(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 41 0.062
CP001029_3387(CP001029|pid:none) Methylobacterium populi BJ001, ... 41 0.062
AP009384_393(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 41 0.062
CP000667_3913(CP000667|pid:none) Salinispora tropica CNB-440, co... 41 0.081
AP006840_1797(AP006840|pid:none) Symbiobacterium thermophilum IA... 41 0.081
CP000319_436(CP000319|pid:none) Nitrobacter hamburgensis X14, co... 41 0.081
AE007871_94(AE007871|pid:none) Agrobacterium tumefaciens str. C5... 41 0.081
CP001359_827(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C... 40 0.11
CP000137_252(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p4... 40 0.11
CP000698_3390(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 40 0.11
CP000759_1285(CP000759|pid:none) Ochrobactrum anthropi ATCC 4918... 40 0.11
CP000157_825(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 35 0.12
CP000509_1199(CP000509|pid:none) Nocardioides sp. JS614, complet... 40 0.14
CP000251_781(CP000251|pid:none) Anaeromyxobacter dehalogenans 2C... 40 0.14
CP000283_3473(CP000283|pid:none) Rhodopseudomonas palustris BisB... 35 0.16
AP009384_1006(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 35 0.16
CP000960_58(CP000960|pid:none) Burkholderia cenocepacia MC0-3 ch... 40 0.18
CP000141_26(CP000141|pid:none) Carboxydothermus hydrogenoformans... 40 0.18
AY009089_10(AY009089|pid:none) Camelpox virus CMS, complete geno... 40 0.18
CP000512_364(CP000512|pid:none) Acidovorax citrulli AAC00-1, com... 40 0.18
CP000949_1133(CP000949|pid:none) Pseudomonas putida W619, comple... 40 0.18
CP000394_904(CP000394|pid:none) Granulibacter bethesdensis CGDNI... 40 0.18
CP001392_301(CP001392|pid:none) Diaphorobacter sp. TPSY, complet... 40 0.18
A83926(A83926) hypothetical protein BH2209 [imported] - Bacillus... 39 0.24
AE008922_2267(AE008922|pid:none) Xanthomonas campestris pv. camp... 39 0.24
CP000519_62(CP000519|pid:none) Mycobacterium sp. KMS plasmid pMK... 39 0.24
CP000854_5199(CP000854|pid:none) Mycobacterium marinum M, comple... 39 0.31
CP001503_1048(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 39 0.31
CP000884_3035(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 39 0.31
CP000390_32(CP000390|pid:none) Mesorhizobium sp. BNC1, complete ... 39 0.31
CP000577_1327(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 39 0.40
CP000769_928(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 38 0.53
CP000325_3564(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 38 0.53
CP000697_1588(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 38 0.53
AM711867_2094(AM711867|pid:none) Clavibacter michiganensis subsp... 38 0.69
CP001131_825(CP001131|pid:none) Anaeromyxobacter sp. K, complete... 38 0.69
AM420293_5513(AM420293|pid:none) Saccharopolyspora erythraea NRR... 38 0.69
CP000759_1552(CP000759|pid:none) Ochrobactrum anthropi ATCC 4918... 38 0.69
CP000301_3641(CP000301|pid:none) Rhodopseudomonas palustris BisB... 38 0.69
AD3126(AD3126) ATP-dependent DNA ligase Atu4632 [imported] - Agr... 32 0.72
CP000143_1266(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 37 0.90
CP000511_5458(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 37 1.5
BX640445_223(BX640445|pid:none) Bordetella bronchiseptica strain... 37 1.5
CP001052_1813(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 37 1.5
CP000539_309(CP000539|pid:none) Acidovorax sp. JS42, complete ge... 37 1.5
AP006618_683(AP006618|pid:none) Nocardia farcinica IFM 10152 DNA... 36 2.0
CP000091_954(CP000091|pid:none) Ralstonia eutropha JMP134 chromo... 36 2.0
CP001074_678(CP001074|pid:none) Rhizobium etli CIAT 652, complet... 36 2.0
CU633750_282(CU633750|pid:none) Cupriavidus taiwanensis str. LMG... 36 2.0
AL591985_625(AL591985|pid:none) Sinorhizobium meliloti 1021 plas... 36 2.0
CP000361_243(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 36 2.0
AP009153_3403(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 36 2.0
CP000319_3693(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 36 2.6
AL009126_1388(AL009126|pid:none) Bacillus subtilis subsp. subtil... 35 3.4
BA000012_6332(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 35 3.4
AE017333_1448(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 35 3.4
CP000480_6097(CP000480|pid:none) Mycobacterium smegmatis str. MC... 35 4.4
CP001359_925(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C... 35 4.4
CP000435_1404(CP000435|pid:none) Synechococcus sp. CC9311, compl... 35 4.5
AP009377_80(AP009377|pid:none) Cryptomeria japonica chloroplast ... 35 5.8
AP010966_79(AP010966|pid:none) Cryptomeria japonica chloroplast ... 35 5.8
CP000820_5058(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 35 5.8
AM902716_3453(AM902716|pid:none) Bordetella petrii strain DSM 12... 35 5.8
DQ867128_1(DQ867128|pid:none) Prunus avium clone pavRPM2 NBS-con... 35 5.8
CP000319_3695(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 35 5.8
DQ870790_1(DQ870790|pid:none) Prunus cerasus var. caproniana clo... 35 5.8
AE008922_105(AE008922|pid:none) Xanthomonas campestris pv. campe... 35 5.8
BT033302_1(BT033302|pid:none) Zea mays full-length cDNA clone ZM... 35 5.8
CP000378_1336(CP000378|pid:none) Burkholderia cenocepacia AU 105... 34 7.6
CP000460_614(CP000460|pid:none) Burkholderia cenocepacia HI2424 ... 34 7.6
AE008923_2374(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 34 7.6
AM039952_2612(AM039952|pid:none) Xanthomonas campestris pv. vesi... 34 7.6
AY316747_148(AY316747|pid:none) Rhizobium sp. NGR234 megaplasmid... 34 9.9
CP000108_827(CP000108|pid:none) Chlorobium chlorochromatii CaD3,... 34 9.9
AJ344068_10(AJ344068|pid:none) Pseudomonas putida plasmid pWW0 c... 34 9.9
CP001131_924(CP001131|pid:none) Anaeromyxobacter sp. K, complete... 34 9.9
AC144375_8(AC144375|pid:none) Medicago truncatula clone mth2-11p... 34 10.0

>BT068552_1(BT068552|pid:none) Zea mays full-length cDNA clone
ZM_BFb0302I10 mRNA, complete cds.
Length = 452

Score = 235 bits (600), Expect(2) = e-105
Identities = 108/171 (63%), Positives = 140/171 (81%)
Frame = +1

Query: 475 RLKKDYMQGMTDSLDLVPIGAWYGKGKRTGTYGAYLLACYDENNEEFQTLCKIGTGFSDE 654
+LKKDYM + DSLDLVPI A+YG+GKRTG +G++LLACYDE NEE+QT+C IGTGFS++
Sbjct: 282 KLKKDYMDSIGDSLDLVPIAAFYGRGKRTGVFGSFLLACYDEQNEEYQTICNIGTGFSEQ 341

Query: 655 QLTTFTSQLKPHLINQPRNQFRFSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILD 834
QL ++ L+ +I +P+ +RF D++ PDVWF PS VWEV AADLSISPVH AA+GI+D
Sbjct: 342 QLEERSASLRSKVIEKPKAYYRFGDTMNPDVWFEPSEVWEVKAADLSISPVHRAANGIVD 401

Query: 835 PNKGIALRFPRFIRIRPDKSPEDATSSDQVVDMYQNQKIKSQSSKINEEDD 987
PNKGI+LRFPR +R+R DKSPE AT+SDQV DMY++QKI ++ +E+DD
Sbjct: 402 PNKGISLRFPRLLRLRDDKSPEQATTSDQVADMYRSQKINHGYNQEDEDDD 452

Score = 171 bits (433), Expect(2) = e-105
Identities = 84/159 (52%), Positives = 111/159 (69%)
Frame = +3

Query: 9 RNLEDYTQKYPDIVANVTKFVGPNVKSFILDCEAVAFDAATKKILSFQVLSTRARKSVQL 188
RN E T KYPD+V V++F VKSF+LDCE VA+D +KIL FQ+LSTRARK V +
Sbjct: 127 RNAERNTGKYPDVVDAVSRFRKATVKSFVLDCEIVAYDREKQKILPFQILSTRARKGVTI 186

Query: 189 SQIKVPVCVFAFDLLYLNGQSLIDEPLIKRREHLVENFIASDGVFAFAKYSNISDVNDIQ 368
+ IKV VC F FD+LY+NG+ L+ E L RREHL +F GVF A +D+ +IQ
Sbjct: 187 NDIKVSVCTFGFDILYINGKPLLQEQLKIRREHLYNSFEEVPGVFKLATAITSNDLEEIQ 246

Query: 369 SYLEEAVEGNCEGLMVKTLKEKSIYEPSRRSYNWLKIKK 485
+L+ AV +CEGL++KTL + + YEP++RS NWLK+KK
Sbjct: 247 KFLDTAVNSSCEGLIIKTLDKDATYEPAKRSNNWLKLKK 285

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,613,738,996
Number of extensions: 31575680
Number of successful extensions: 84611
Number of sequences better than 10.0: 424
Number of HSP's gapped: 84083
Number of HSP's successfully gapped: 695
Length of query: 353
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 224
Effective length of database: 633,664,753
Effective search space: 141940904672
Effective search space used: 141940904672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.71 gvh: 0.34 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial

>> prediction for Contig-U12635-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 4
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0