Contig-U12635-1 |
Contig ID |
Contig-U12635-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1060 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
4383406 |
End point |
4382418 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
8 |
Number of EST |
8 |
Link to clone list |
U12635 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 2 |
Homology vs DNA |
Query= Contig-U12635-1 (Contig-U12635-1Q) /CSM_Contig/Contig-U12635-1Q.Seq.d (1060 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ361094) Dictyostelium discoideum cDNA clone:ddc9f20, 5' e... 950 0.0 2 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 932 0.0 2 (BJ386247) Dictyostelium discoideum cDNA clone:ddc57i15, 3' ... 890 0.0 2 (BJ355383) Dictyostelium discoideum cDNA clone:dda56k14, 3' ... 882 0.0 2 (BJ355066) Dictyostelium discoideum cDNA clone:dda55l15, 3' ... 882 0.0 2 (BJ350067) Dictyostelium discoideum cDNA clone:dda38h15, 3' ... 866 0.0 2 (BJ403786) Dictyostelium discoideum cDNA clone:dds26d07, 3' ... 595 0.0 2 (BJ348172) Dictyostelium discoideum cDNA clone:dda32l10, 3' ... 379 e-101 2 (BJ383993) Dictyostelium discoideum cDNA clone:ddc47k20, 3' ... 222 2e-53 1 (AR549484) Sequence 4615 from patent US 6747137. 42 2e-10 4 (ES387991) MUS04-K07.y1d-s SHGC-MUS Mytilus californianus cD... 50 2e-08 2 (EX812939) CBNA3215.rev CBNA Phycomyces blakesleeanus NRRL15... 48 3e-06 2 (EX850727) CBNC8635.rev CBNC Phycomyces blakesleeanus NRRL15... 48 3e-06 2 (CZ285829) cp43e06.r Candida parapsilosis Random Genomic Lib... 46 2e-04 2 (FK192166) XABT206034.g1 Gateway compatible cien cDNA librar... 48 7e-04 2 (FF704641) XABT112588.rev Gateway compatible cien cDNA libra... 48 7e-04 2 (DT459797) GH_ON38E09.r GH_ON Gossypium hirsutum cDNA clone ... 56 0.003 1 (AM571925) Paracentrotus lividus EST, clone MPMGp1173E18122Q... 56 0.003 1 (CO131357) GR__Eb43J20.r GR__Eb Gossypium raimondii cDNA clo... 56 0.003 1 (FC757482) CBBN10090.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 50 0.003 2 (ES548964) TH1005D05SP6 TH1 Tribolium castaneum cDNA, mRNA s... 54 0.004 2 (DT770287) 125590251 TH1 Tribolium castaneum cDNA clone 50M1... 52 0.044 1 (BI746156) rm23e03.y1 Meloidogyne arenaria egg pAMP1 v1 Chia... 36 0.15 3 (DW255380) UI-S-GB1-aam-d-10-0-UI.s1 UI-S-GB1 Euprymna scolo... 34 0.50 2 (EE147963) SiJWE11BEA Lausanne fire ant library Solenopsis i... 34 0.50 2 (AL512593) Human DNA sequence from clone RP11-508N12 on chro... 48 0.68 1 (AC225729) Echinops telfairi clone CH238-396C2, WORKING DRAF... 48 0.68 1 (AC213543) Echinops telfairi clone CH238-90F1, WORKING DRAFT... 48 0.68 1 (DQ127600) Emiliania huxleyi virus 163 clone combi237+89.seq... 34 1.8 2 (AY069960) Plasmodium falciparum DNA ligase 1 (Lig1) mRNA, c... 44 2.0 2 (AY161174) Plasmodium falciparum DNA ligase 1 precursor, gen... 44 2.1 2 (CU469566) Zebrafish DNA sequence from clone CH1073-155F18 i... 46 2.7 1 (ER312221) 1092343802710 Global-Ocean-Sampling_GS-34-01-01-1... 46 2.7 1 (EJ135880) 1092343601276 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.7 1 (CZ288889) cp60g10.r Candida parapsilosis Random Genomic Lib... 46 2.7 1 (CZ282498) cp24d10.f Candida parapsilosis Random Genomic Lib... 46 2.7 1 (FK043364) XABT96982.g1 Gateway compatible cien cDNA library... 40 5.9 2 (AL021573) Caenorhabditis elegans DNA *** SEQUENCING IN PROG... 38 6.1 6 (BW454143) Ciona intestinalis cDNA, clone:cijv004o22, 3'end,... 40 6.2 2 (BW454254) Ciona intestinalis cDNA, clone:cijv005e09, 3'end,... 40 6.3 2 (BW430275) Ciona intestinalis cDNA, clone:cijv005e09, 5'end,... 40 6.5 2 (BZ297347) CG3371.r1 Candida glabrata Random Genomic Library... 40 6.7 2 (FF773144) XABT74674.rev Gateway compatible cien cDNA librar... 40 6.8 2 (BW430169) Ciona intestinalis cDNA, clone:cijv004o22, 5'end,... 40 6.8 2 (BM901006) rc44a08.y1 Meloidogyne hapla egg pAMP1 v1 Meloido... 30 6.9 3 (FF772119) XABT74007.rev Gateway compatible cien cDNA librar... 40 6.9 2 (FK143988) XABT176307.g1 Gateway compatible cien cDNA librar... 40 7.1 2 (FF712975) XABT32810.rev Gateway compatible cien cDNA librar... 40 7.1 2 (FK045118) XABT114499.g1 Gateway compatible cien cDNA librar... 40 7.2 2 (FF710490) XABT31128.rev Gateway compatible cien cDNA librar... 40 7.3 2 (AV961991) Ciona intestinalis cDNA, clone:cicl04f23, 5' end,... 40 7.3 2 (FF726417) XABT42045.rev Gateway compatible cien cDNA librar... 40 7.4 2 (FK128371) XABT166876.g1 Gateway compatible cien cDNA librar... 40 7.4 2 (FF753163) XABT61043.rev Gateway compatible cien cDNA librar... 40 7.5 2 (FF707665) XABT28785.rev Gateway compatible cien cDNA librar... 40 7.5 2 (FK160895) XABT186765.g1 Gateway compatible cien cDNA librar... 40 7.5 2 (FF800095) XABT92812.rev Gateway compatible cien cDNA librar... 40 7.6 2 (FK160894) XABT186765.b1 Gateway compatible cien cDNA librar... 40 7.7 2 (FF850299) CBWU2165.g1 Yutaka Satou unpublished cDNA library... 40 7.7 2 (CC908984) t047h15ba.r1 TAMBT Bos taurus genomic clone t047h... 40 7.7 2 (FF943265) CBWU76347.g1 Yutaka Satou unpublished cDNA librar... 40 7.7 2 (CZ290054) cp67f12.f Candida parapsilosis Random Genomic Lib... 38 7.8 2 (FF974356) CBWU95834.g1 Yutaka Satou unpublished cDNA librar... 40 7.9 2 (BW406133) Ciona intestinalis cDNA, clone:ciem850h24, 3'end,... 40 7.9 2 (AV849940) Ciona intestinalis cDNA, clone:rcicl04f23, 3' end... 40 7.9 2 (CB336378) Tc016A05R Tribolium castaneum embryonic cDNA libr... 42 8.7 2
>(BJ361094) Dictyostelium discoideum cDNA clone:ddc9f20, 5' end, single read. Length = 549
Score = 950 bits (479), Expect(2) = 0.0 Identities = 479/479 (100%) Strand = Plus / Plus
Query: 1 atttataccgaaatttagaggattacactcaaaaatatccagatattgttgcaaatgtta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atttataccgaaatttagaggattacactcaaaaatatccagatattgttgcaaatgtta 60
Query: 61 ctaaattcgttgggccaaatgtgaaatcattcattttagattgtgaagcagttgcatttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctaaattcgttgggccaaatgtgaaatcattcattttagattgtgaagcagttgcatttg 120
Query: 121 atgctgcaacaaaaaagattttatcatttcaagttttatcgactagagcaagaaaaagtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 atgctgcaacaaaaaagattttatcatttcaagttttatcgactagagcaagaaaaagtg 180
Query: 181 tacaattgtcacaaattaaagtaccagtttgtgtatttgctttcgatttactctatttga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tacaattgtcacaaattaaagtaccagtttgtgtatttgctttcgatttactctatttga 240
Query: 241 atggtcaatcattaattgatgaaccattaatcaaacgtcgtgaacatttagttgaaaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atggtcaatcattaattgatgaaccattaatcaaacgtcgtgaacatttagttgaaaatt 300
Query: 301 tcattgcatccgatggtgtatttgcttttgctaaatattcaaatatttccgacgtaaatg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcattgcatccgatggtgtatttgcttttgctaaatattcaaatatttccgacgtaaatg 360
Query: 361 atattcaatcctatcttgaagaggctgtcgagggtaattgtgaaggtttaatggtgaaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 atattcaatcctatcttgaagaggctgtcgagggtaattgtgaaggtttaatggtgaaaa 420
Query: 421 ctttgaaagagaaatcaatctatgaaccatcacgtcgttcttacaattggttaaagatt 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ctttgaaagagaaatcaatctatgaaccatcacgtcgttcttacaattggttaaagatt 479
Score = 127 bits (64), Expect(2) = 0.0 Identities = 64/64 (100%) Strand = Plus / Plus
Query: 487 gattatatgcaaggtatgaccgatagtttagatttggtacccattggtgcatggtatggt 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 gattatatgcaaggtatgaccgatagtttagatttggtacccattggtgcatggtatggt 545
Query: 547 aaag 550 |||| Sbjct: 546 aaag 549
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,006,016,487 Number of extensions: 55356942 Number of successful extensions: 4214268 Number of sequences better than 10.0: 66 Length of query: 1060 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1036 Effective length of database: 97,308,875,965 Effective search space: 100811995499740 Effective search space used: 100811995499740 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 4 |
Homology vs Protein |
Query= Contig-U12635-1 (Contig-U12635-1Q) /CSM_Contig/Contig-U12635-1Q.Seq.d (1060 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BT068552_1(BT068552|pid:none) Zea mays full-length cDNA clone ZM... 235 e-105 (Q42572) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 223 e-103 AK222166_1(AK222166|pid:none) Arabidopsis thaliana mRNA for DNA ... 223 e-103 S71278(S71278) DNA ligase (ATP) (EC 6.5.1.1) - Arabidopsis thali... 222 e-103 CP000590_67(CP000590|pid:none) Ostreococcus lucimarinus CCE9901 ... 226 3e-99 (P51892) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 205 3e-97 BX005060_7(BX005060|pid:none) Zebrafish DNA sequence from clone ... 206 4e-96 AB072813_1(AB072813|pid:none) Coprinopsis cinerea mRNA for DNA l... 203 8e-96 (Q9W1H4) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 200 9e-95 AY051939_1(AY051939|pid:none) Drosophila melanogaster LD41868 fu... 200 9e-95 (P18858) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 189 9e-93 AK300607_1(AK300607|pid:none) Homo sapiens cDNA FLJ50685 complet... 187 3e-92 (P37913) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 190 4e-92 (P12000) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 197 4e-92 Z95334_1(Z95334|pid:none) S.pombe chromosome I cosmid c20G8. 197 4e-92 CP001323_748(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 217 5e-92 AK161793_1(AK161793|pid:none) Mus musculus 13 days embryo male t... 188 2e-91 FN357328_36(FN357328|pid:none) Schistosoma mansoni genome sequen... 207 2e-91 (Q9JHY8) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 187 5e-91 AC007863_3(AC007863|pid:none) Trypanosoma brucei chromosome 6 cl... 207 1e-90 FN357328_37(FN357328|pid:none) Schistosoma mansoni genome sequen... 207 6e-89 CR382132_42(CR382132|pid:none) Yarrowia lipolytica strain CLIB12... 175 3e-88 FN317154_1(FN317154|pid:none) Schistosoma japonicum isolate Anhu... 206 6e-88 CR380955_135(CR380955|pid:none) Candida glabrata strain CBS138 c... 200 4e-87 (P04819) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 197 3e-86 X03246_1(X03246|pid:none) Yeast CDC9 gene for DNA ligase. 197 3e-86 AM494967_348(AM494967|pid:none) Leishmania braziliensis chromoso... 203 9e-86 Z23078_1(Z23078|pid:none) Crithidia fasciculata LIG1 gene for DN... 199 2e-85 CU633900_875(CU633900|pid:none) Podospora anserina genomic DNA c... 169 1e-84 AP007171_676(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 169 4e-84 T19544(T19544)hypothetical protein C29A12.3 - Caenorhabditis ele... 185 2e-83 CR382124_521(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 184 2e-83 CP001141_201(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1... 186 7e-83 AC011438_1(AC011438|pid:none) Genomic sequence for Arabidopsis t... 193 1e-82 AC026875_23(AC026875|pid:none) Genomic sequence for Arabidopsis ... 191 6e-82 CP000496_490(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 175 8e-82 AM055943_105(AM055943|pid:none) Toxoplasma gondii RH, genomic DN... 189 1e-81 AM920431_1301(AM920431|pid:none) Penicillium chrysogenum Wiscons... 162 9e-81 CU928180_53(CU928180|pid:none) Kluyveromyces thermotolerans stra... 189 1e-80 FM992690_72(FM992690|pid:none) Candida dubliniensis CD36 chromos... 176 3e-80 CR954210_64(CR954210|pid:none) Ostreococcus tauri strain OTTH059... 162 7e-75 AL590442_120(AL590442|pid:none) chromosome II of strain GB-M1 of... 164 3e-73 AP008216_911(AP008216|pid:none) Oryza sativa (japonica cultivar-... 177 7e-69 EU952130_1(EU952130|pid:none) Zea mays clone 1168020 unknown mRNA. 159 8e-64 CP001140_276(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 166 4e-62 AE017261_672(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 158 3e-61 AY141199_3(AY141199|pid:none) Entamoeba histolytica putative end... 160 1e-60 (Q9HJ26) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 154 3e-59 CS051069_1(CS051069|pid:none) Sequence 1 from Patent EP1514938. ... 161 5e-59 (Q9YD18) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 161 5e-59 (Q979A1) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 152 5e-59 (A1RY72) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 155 9e-59 (A1RTK4) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 157 9e-59 AB208791_1(AB208791|pid:none) Homo sapiens mRNA for DNA ligase I... 176 1e-58 BC110622_1(BC110622|pid:none) Homo sapiens ligase I, DNA, ATP-de... 176 1e-58 (A8AB20) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 162 1e-58 (Q9P9K9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 152 1e-57 (A8MDU6) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 159 2e-57 CP001399_1947(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 151 2e-57 AJ850915_1(AJ850915|pid:none) Ferroplasma acidiphilum lig gene f... 142 4e-57 (A3MS62) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 157 5e-57 (Q980T8) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 150 1e-56 (O67398) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 148 3e-56 U82370_1(U82370|pid:none) Pyrobaculum aerophilum DNA ligase gene... 147 2e-55 (O93723) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 147 2e-55 (B1L3V2) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 137 1e-54 AP007155_578(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 119 2e-54 (A9A3K1) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 144 6e-54 EU513165_1(EU513165|pid:none) Pinus sylvestris putative DNA liga... 204 8e-54 (A4YD25) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 147 9e-53 (Q02093) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 140 1e-52 CP001324_855(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 150 1e-50 (Q976G4) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 140 1e-50 EU016614_18(EU016614|pid:none) Uncultured Group I marine crenarc... 133 3e-49 AF393466_37(AF393466|pid:none) Uncultured crenarchaeote 74A4 par... 141 7e-49 AM426351_2(AM426351|pid:none) Vitis vinifera contig VV78X092318.... 154 8e-45 CU367853_17(CU367853|pid:none) Complete fosmid clone containing ... 103 5e-43 X68020_1(X68020|pid:none) S.cerevisiae SFA and ARP genes. 176 2e-42 (B5YD88) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 99 1e-39 EU016672_1(EU016672|pid:none) Uncultured Group I marine crenarch... 133 4e-37 (Q9V185) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 99 7e-36 AK143531_1(AK143531|pid:none) Mus musculus 12 days embryo whole ... 94 5e-35 AL645594_8(AL645594|pid:none) Mouse DNA sequence from clone RP23... 94 5e-35 BC167946_1(BC167946|pid:none) Xenopus tropicalis cDNA clone MGC:... 90 5e-35 FJ713107_1(FJ713107|pid:none) Thermococcus sp. 1519 thermostable... 96 5e-35 BC068005_1(BC068005|pid:none) Homo sapiens ligase III, DNA, ATP-... 94 8e-35 (P49916) RecName: Full=DNA ligase 3; EC=6.5.1.1; AltNam... 94 8e-35 AF491645_1(AF491645|pid:none) Homo sapiens ligase III, DNA, ATP-... 94 8e-35 AK300363_1(AK300363|pid:none) Homo sapiens cDNA FLJ61710 complet... 94 8e-35 BC111207_1(BC111207|pid:none) Bos taurus ligase III, DNA, ATP-de... 93 1e-34 (O59288) RecName: Full=Probable thermostable DNA ligase; ... 95 2e-34 BC070993_1(BC070993|pid:none) Xenopus laevis DNA ligase III isof... 88 3e-34 (Q46BA3) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 87 1e-33 (Q8TMT1) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 84 1e-33 GM016257_44(GM016257|pid:none) Sequence 1087 from Patent EP19234... 99 1e-33 AB042527_1(AB042527|pid:none) Thermococcus kodakaraensis Tk-lig ... 99 1e-33 (Q8PTK1) RecName: Full=DNA ligase 2; EC=6.5.1.1; AltNam... 84 2e-33 (Q9HH07) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 93 2e-33 AF393655_1(AF393655|pid:none) Xenopus laevis DNA ligase III isof... 88 4e-33 S41974(S41974) DNA ligase (ATP) (EC 6.5.1.1) - fowlpox virus &Z... 94 5e-33 (Q12X08) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 90 1e-32 (P97386) RecName: Full=DNA ligase 3; EC=6.5.1.1; AltNam... 84 4e-32 U66057_1(U66057|pid:none) Mus musculus DNA ligase III-beta mRNA,... 84 4e-32 CP000855_1522(CP000855|pid:none) Thermococcus onnurineus NA1, co... 94 4e-32 (A7IAA9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 95 1e-31 AY318871_61(AY318871|pid:none) Canarypox virus strain ATCC VR-11... 93 2e-31 U00761_1(U00761|pid:none) Rabbit fibroma virus ATP-dependent DNA... 90 1e-30 AF170722_137(AF170722|pid:none) Rabbit fibroma virus, complete g... 90 1e-30 (A0B7F9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 81 1e-30 AF482758_192(AF482758|pid:none) Cowpox virus strain Brighton Red... 90 2e-30 AF095689_210(AF095689|pid:none) Vaccinia virus (strain Tian Tan)... 90 2e-30 (P33798) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 87 2e-30 DQ441424_167(DQ441424|pid:none) Variola virus strain Ethiopia 19... 87 2e-30 AY678275_231(AY678275|pid:none) Vaccinia virus strain LC16m8, co... 89 3e-30 AY313847_184(AY313847|pid:none) Vaccinia virus strain Acambis cl... 89 3e-30 (O57250) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 89 3e-30 DQ439815_184(DQ439815|pid:none) Vaccinia virus strain DUKE, comp... 89 3e-30 DQ792504_194(DQ792504|pid:none) Horsepox virus isolate MNR-76, c... 89 3e-30 AM501482_184(AM501482|pid:none) Vaccinia virus Ankara strain cho... 89 3e-30 DQ121394_172(DQ121394|pid:none) Vaccinia virus strain Lister clo... 89 3e-30 AE000782_612(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,... 79 7e-30 DQ441434_170(DQ441434|pid:none) Variola virus strain Niger 1969 ... 87 7e-30 AF012825_149(AF012825|pid:none) Ectromelia virus strain Moscow, ... 90 9e-30 AY965319_1(AY965319|pid:none) Synthetic construct clone VACV-WR_... 87 1e-29 (P20492) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 87 1e-29 (P16272) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 87 1e-29 AY689436_142(AY689436|pid:none) Deerpox virus W-848-83, complete... 81 1e-29 AY603973_153(AY603973|pid:none) Monkeypox virus strain MPXV-WRAI... 87 1e-29 AF380138_160(AF380138|pid:none) Monkeypox virus strain Zaire-96-... 87 1e-29 X94355_175(X94355|pid:none) Cowpox virus strain GRI-90, complete... 87 1e-29 AF410153_130(AF410153|pid:none) Swinepox virus isolate 17077-99,... 84 2e-29 (A3CWP1) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 79 2e-27 CP001338_2640(CP001338|pid:none) Candidatus Methanosphaerula pal... 88 1e-26 CU633457_251(CU633457|pid:none) Podospora anserina genomic DNA c... 123 1e-26 CP001365_870(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 84 2e-26 AF409137_135(AF409137|pid:none) Lumpy skin disease virus NW-LW i... 77 7e-26 BC135341_1(BC135341|pid:none) Xenopus tropicalis ligase IV, DNA,... 71 9e-26 BC150236_1(BC150236|pid:none) Danio rerio zgc:165595, mRNA (cDNA... 73 2e-25 (B0R4C9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 84 3e-25 AM920428_937(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 117 5e-25 AF393656_1(AF393656|pid:none) Xenopus laevis DNA ligase IV mRNA,... 72 7e-25 BC098869_1(BC098869|pid:none) Danio rerio zgc:112973, mRNA (cDNA... 80 1e-24 (A2SR38) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 75 5e-24 (Q2FTH4) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 77 8e-24 (A8N936) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 67 2e-21 (Q7Z7W5) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 67 2e-21 AB269887_1(AB269887|pid:none) Populus nigra PnLig4 mRNA for DNA ... 70 3e-21 (B1L3K8) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 68 4e-21 BC141417_1(BC141417|pid:none) Synthetic construct Mus musculus c... 65 6e-21 AK148081_1(AK148081|pid:none) Mus musculus B16 F10Y cells cDNA, ... 65 6e-21 AK083353_1(AK083353|pid:none) Mus musculus 2 days neonate thymus... 65 6e-21 (P54875) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 73 1e-20 (A1RXA6) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 69 2e-20 CP001472_2520(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 63 2e-20 AB058600_1(AB058600|pid:none) Gallus gallus LIG4 gene for DNA li... 63 3e-20 (Q90YB1) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 63 3e-20 AK314844_1(AK314844|pid:none) Homo sapiens cDNA, FLJ95736, highl... 64 4e-20 (Q9LL84) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 71 6e-20 (Q2NHF9) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 64 8e-20 (P49917) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 62 1e-19 AF479264_1(AF479264|pid:none) Homo sapiens ligase IV, DNA, ATP-d... 62 1e-19 AK292419_1(AK292419|pid:none) Homo sapiens cDNA FLJ75440 complet... 62 1e-19 (Q50566) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 64 8e-19 (Q2U6A1) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 62 1e-18 (O74833) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 60 1e-18 T40845(T40845)dna ligase - fission yeast (Schizosaccharomyces po... 60 1e-18 (Q4WVG8) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 66 4e-18 CR932223_1(CR932223|pid:none) DNA ligase IV, Paramecium tetraure... 63 5e-18 CR932222_1(CR932222|pid:none) DNA ligase IV, Paramecium tetraure... 63 5e-18 AM270049_7(AM270049|pid:none) Aspergillus niger contig An03c0080... 68 7e-18 AK156030_1(AK156030|pid:none) Mus musculus activated spleen cDNA... 94 1e-17 (Q57635) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 64 7e-17 AB023042_11(AB023042|pid:none) Arabidopsis thaliana genomic DNA,... 71 6e-16 FN357417_33(FN357417|pid:none) Schistosoma mansoni genome sequen... 62 8e-16 AK342216_1(AK342216|pid:none) Acyrthosiphon pisum ACYPI004007 mR... 87 1e-15 (Q9FCB1) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 59 5e-15 CP000685_1749(CP000685|pid:none) Flavobacterium johnsoniae UW101... 57 6e-15 (A1UDY9) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 60 1e-14 CP000576_784(CP000576|pid:none) Prochlorococcus marinus str. MIT... 61 3e-14 (B4UIS1) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 52 4e-14 (Q2IH69) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 52 5e-14 (Q7X7E9) RecName: Full=Putative DNA ligase 4; EC=6.5.1.... 73 6e-14 (Q826P6) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 60 9e-14 CP000551_782(CP000551|pid:none) Prochlorococcus marinus str. AS9... 59 1e-13 CP000474_270(CP000474|pid:none) Arthrobacter aurescens TC1, comp... 54 4e-13 (A4TDS2) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 54 4e-13 (A0QUP1) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 56 5e-13 (Q1DKE7) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 55 7e-13 (Q6FVD8) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 77 8e-13 CR954211_172(CR954211|pid:none) Ostreococcus tauri strain OTTH05... 55 9e-13 (Q75CA4) RecName: Full=DNA ligase 4; EC=6.5.1.1; AltNam... 71 1e-12 AY119169_1(AY119169|pid:none) Drosophila melanogaster RH46576 fu... 58 2e-12 AE014298_2019(AE014298|pid:none) Drosophila melanogaster chromos... 58 2e-12 CP001124_126(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 62 3e-12 CP000591_166(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 59 4e-12 (A0QJL0) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 54 6e-12 CP000113_5923(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 52 7e-12 CP000157_2633(CP000157|pid:none) Erythrobacter litoralis HTCC259... 49 1e-11 (Q73V97) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 53 1e-11 AY229987_109(AY229987|pid:none) Cryptophlebia leucotreta granulo... 52 2e-11 BX548174_820(BX548174|pid:none) Prochlorococcus marinus MED4 com... 54 2e-11 CU928175_319(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 72 3e-11 (A9GU24) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 50 3e-11 (A0PTC0) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 51 3e-11 (A1T6P2) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 49 1e-10 (A4F870) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 51 1e-10 CP001618_271(CP001618|pid:none) Beutenbergia cavernae DSM 12333,... 55 2e-10 DQ889955_1(DQ889955|pid:none) Saccharomyces cariocanus strain 50... 69 3e-10 CP000656_1812(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 48 6e-10 CP000804_3360(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 47 8e-10 CP000384_4335(CP000384|pid:none) Mycobacterium sp. MCS, complete... 50 2e-09 CU928167_468(CU928167|pid:none) Kluyveromyces thermotolerans str... 66 2e-09 CP000580_4684(CP000580|pid:none) Mycobacterium sp. JLS, complete... 50 3e-09 CR382139_184(CR382139|pid:none) Debaryomyces hansenii strain CBS... 65 3e-09 (B1W5J2) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 52 4e-09 CP000454_294(CP000454|pid:none) Arthrobacter sp. FB24, complete ... 50 5e-09 CP000480_5382(CP000480|pid:none) Mycobacterium smegmatis str. MC... 45 5e-09 CP000927_4880(CP000927|pid:none) Caulobacter sp. K31, complete g... 46 5e-09 AC006605_8(AC006605|pid:none) Caenorhabditis elegans cosmid C07H... 65 5e-09 CP000712_2459(CP000712|pid:none) Pseudomonas putida F1, complete... 43 1e-08 AY787762_7(AY787762|pid:none) Streptomyces filamentosus strain N... 50 1e-08 FJ362359_5(FJ362359|pid:none) Caenorhabditis brenneri contig JD0... 64 1e-08 X95001_1(X95001|pid:none) Candida albicans LIG4 gene for ATP-dep... 63 2e-08 (P52496) RecName: Full=DNA ligase 4; Short=CaLIG4; ... 63 2e-08 S71741(S71741)DNA ligase (ATP) (EC 6.5.1.1) - yeast (Candida alb... 63 2e-08 BA000040_8031(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 54 2e-08 CP000094_2096(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 44 3e-08 CT573213_4285(CT573213|pid:none) Frankia alni str. ACN14A chromo... 49 4e-08 AB353135_1(AB353135|pid:none) Magnaporthe grisea MGLIG4 gene for... 62 4e-08 CP000685_3281(CP000685|pid:none) Flavobacterium johnsoniae UW101... 46 5e-08 (A1SKL2) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 51 1e-07 (A4FY19) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 60 2e-07 CU633900_506(CU633900|pid:none) Podospora anserina genomic DNA c... 60 2e-07 (Q18HT7) RecName: Full=DNA ligase 1; EC=6.5.1.1; AltNam... 60 2e-07 CP001001_3640(CP001001|pid:none) Methylobacterium radiotolerans ... 41 2e-07 AE016958_1329(AE016958|pid:none) Mycobacterium avium subsp. para... 47 2e-07 CP000924_468(CP000924|pid:none) Thermoanaerobacter pseudethanoli... 52 2e-07 CP000431_15(CP000431|pid:none) Rhodococcus jostii RHA1, complete... 59 3e-07 AP006618_2953(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 59 3e-07 (A9AAX4) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 59 3e-07 AP011115_5112(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 40 3e-07 CP000383_2793(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 59 4e-07 CP000431_4993(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 39 4e-07 CP000552_858(CP000552|pid:none) Prochlorococcus marinus str. MIT... 45 4e-07 CP001074_1231(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 45 4e-07 BA000040_1144(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 42 5e-07 CP000496_206(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 57 8e-07 CP000612_1968(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 57 1e-06 (A6UNY0) RecName: Full=DNA ligase; EC=6.5.1.1; AltName:... 57 1e-06 AF547984_103(AF547984|pid:none) Adoxophyes orana granulovirus, c... 42 1e-06 CP000304_2087(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 40 2e-06 CP001341_2554(CP001341|pid:none) Arthrobacter chlorophenolicus A... 47 2e-06 CP000473_7724(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 55 3e-06 CP000699_3951(CP000699|pid:none) Sphingomonas wittichii RW1, com... 55 3e-06 U53466_120(U53466|pid:none) Cydia pomonella granulovirus, comple... 44 3e-06 AL591688_2917(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 47 3e-06 AE016958_880(AE016958|pid:none) Mycobacterium avium subsp. parat... 47 4e-06 AP009493_6690(AP009493|pid:none) Streptomyces griseus subsp. gri... 40 6e-06 CP000143_1006(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 38 7e-06 CP000479_1008(CP000479|pid:none) Mycobacterium avium 104, comple... 46 9e-06 CP000232_1456(CP000232|pid:none) Moorella thermoacetica ATCC 390... 54 9e-06 AM743169_50(AM743169|pid:none) Stenotrophomonas maltophilia K279... 39 2e-05 CP001150_728(CP001150|pid:none) Rhodobacter sphaeroides KD131 ch... 37 2e-05 CP000137_251(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p4... 53 2e-05 CP000555_1518(CP000555|pid:none) Methylibium petroleiphilum PM1,... 44 2e-05 CP000577_1067(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 37 2e-05 BX908798_950(BX908798|pid:none) Parachlamydia-related symbiont U... 41 2e-05 (B1ZZL9) RecName: Full=Probable DNA ligase; EC=6.5.1.1;... 53 2e-05 CP000103_1171(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 43 7e-05 CP000383_3466(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 50 1e-04 AM181176_1280(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 50 1e-04 CP000075_3872(CP000075|pid:none) Pseudomonas syringae pv. syring... 42 1e-04 CP001390_329(CP001390|pid:none) Geobacter sp. FRC-32, complete g... 50 1e-04 CP000830_2573(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 49 2e-04 CP000264_2667(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 49 3e-04 CP000270_2104(CP000270|pid:none) Burkholderia xenovorans LB400 c... 36 3e-04 CP000360_779(CP000360|pid:none) Acidobacteria bacterium Ellin345... 49 4e-04 CP001074_1139(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 49 4e-04 AL591688_2752(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 49 4e-04 CP001349_1481(CP001349|pid:none) Methylobacterium nodulans ORS 2... 48 5e-04 CP001075_196(CP001075|pid:none) Rhizobium etli CIAT 652 plasmid ... 48 7e-04 CP000248_68(CP000248|pid:none) Novosphingobium aromaticivorans D... 48 7e-04 CP000356_287(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ... 48 7e-04 (O31917) RecName: Full=SPBc2 prophage-derived DNA ligase-like pr... 47 9e-04 CP001098_340(CP001098|pid:none) Halothermothrix orenii H 168, co... 47 9e-04 AP008931_104(AP008931|pid:none) Rhodococcus erythropolis PR4 pla... 47 9e-04 CP000739_719(CP000739|pid:none) Sinorhizobium medicae WSM419 pla... 45 0.001 EU414185_1(EU414185|pid:none) Pseudomonas sp. A21 ATP-dependent ... 44 0.001 CP000431_237(CP000431|pid:none) Rhodococcus jostii RHA1, complet... 47 0.001 AP011116_535(AP011116|pid:none) Rhodococcus opacus B4 plasmid pR... 47 0.001 BX842652_61(BX842652|pid:none) Bdellovibrio bacteriovorus comple... 47 0.001 AP011115_1344(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 47 0.001 CP001341_516(CP001341|pid:none) Arthrobacter chlorophenolicus A6... 47 0.001 AM236086_210(AM236086|pid:none) Rhizobium leguminosarum bv. vici... 47 0.001 EU686623_1(EU686623|pid:none) Uncultured marine crenarchaeote AD... 47 0.001 AE007872_51(AE007872|pid:none) Agrobacterium tumefaciens str. C5... 46 0.002 CP000738_2601(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 46 0.002 AE006469_229(AE006469|pid:none) Sinorhizobium meliloti 1021 plas... 46 0.002 AL591985_1404(AL591985|pid:none) Sinorhizobium meliloti 1021 pla... 43 0.002 CP000700_167(CP000700|pid:none) Sphingomonas wittichii RW1 plasm... 46 0.003 CP000518_850(CP000518|pid:none) Mycobacterium sp. KMS, complete ... 46 0.003 CP001280_1697(CP001280|pid:none) Methylocella silvestris BL2, co... 39 0.003 CP000133_1146(CP000133|pid:none) Rhizobium etli CFN 42, complete... 45 0.003 CP001348_362(CP001348|pid:none) Clostridium cellulolyticum H10, ... 45 0.004 CP000434_147(CP000434|pid:none) Rhodococcus jostii RHA1 plasmid ... 45 0.004 CP001096_865(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 45 0.004 AE016853_3385(AE016853|pid:none) Pseudomonas syringae pv. tomato... 33 0.006 AE015451_3233(AE015451|pid:none) Pseudomonas putida KT2440 compl... 44 0.007 CP000489_409(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 38 0.007 CP000075_3244(CP000075|pid:none) Pseudomonas syringae pv. syring... 36 0.009 CP000874_2018(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN... 39 0.009 CP001280_3027(CP001280|pid:none) Methylocella silvestris BL2, co... 44 0.010 CP001504_651(CP001504|pid:none) Burkholderia glumae BGR1 chromos... 44 0.010 CP000717_956(CP000717|pid:none) Mycobacterium tuberculosis F11, ... 44 0.013 (P59971) RecName: Full=Putative DNA ligase-like protein Mb0963; ... 44 0.013 AE007872_97(AE007872|pid:none) Agrobacterium tumefaciens str. C5... 44 0.013 CP000885_1710(CP000885|pid:none) Clostridium phytofermentans ISD... 44 0.013 (P71571) RecName: Full=Putative DNA ligase-like protein Rv0938/M... 44 0.013 AM236080_1303(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 44 0.013 CP001191_794(CP001191|pid:none) Rhizobium leguminosarum bv. trif... 43 0.016 CP000613_629(CP000613|pid:none) Rhodospirillum centenum SW, comp... 43 0.016 CP000362_1696(CP000362|pid:none) Roseobacter denitrificans OCh 1... 43 0.016 CP000448_1074(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 43 0.021 CP000781_1459(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 43 0.021 CP000271_1679(CP000271|pid:none) Burkholderia xenovorans LB400 c... 43 0.021 AE007869_823(AE007869|pid:none) Agrobacterium tumefaciens str. C... 43 0.021 F97461(F97461)DNA ligase (AB042527) [imported] - Agrobacterium t... 43 0.021 CP000744_3137(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 34 0.026 BA000012_4246(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 42 0.028 CP000301_743(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 42 0.028 CP000738_1295(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 42 0.036 CT573213_2047(CT573213|pid:none) Frankia alni str. ACN14A chromo... 42 0.036 CP000769_823(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 42 0.036 BA000040_5182(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 42 0.036 CP000908_3195(CP000908|pid:none) Methylobacterium extorquens PA1... 42 0.037 CP001196_1153(CP001196|pid:none) Oligotropha carboxidovorans OM5... 42 0.037 CP000463_721(CP000463|pid:none) Rhodopseudomonas palustris BisA5... 42 0.037 CP001510_3212(CP001510|pid:none) Methylobacterium extorquens AM1... 42 0.037 CP001298_3411(CP001298|pid:none) Methylobacterium chloromethanic... 42 0.037 AJ507836_161(AJ507836|pid:none) Arthrobacter nicotinovorans pAO1... 42 0.048 AM236085_119(AM236085|pid:none) Rhizobium leguminosarum bv. vici... 42 0.048 CP000860_561(CP000860|pid:none) Candidatus Desulforudis audaxvia... 42 0.048 AE015451_1096(AE015451|pid:none) Pseudomonas putida KT2440 compl... 42 0.048 CP000712_1129(CP000712|pid:none) Pseudomonas putida F1, complete... 42 0.048 AE017333_1404(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 41 0.062 CP001027_813(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch... 41 0.062 CU633751_83(CU633751|pid:none) Cupriavidus taiwanensis str. LMG1... 41 0.062 CP000304_2604(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 41 0.062 CP001029_3387(CP001029|pid:none) Methylobacterium populi BJ001, ... 41 0.062 AP009384_393(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 41 0.062 CP000667_3913(CP000667|pid:none) Salinispora tropica CNB-440, co... 41 0.081 AP006840_1797(AP006840|pid:none) Symbiobacterium thermophilum IA... 41 0.081 CP000319_436(CP000319|pid:none) Nitrobacter hamburgensis X14, co... 41 0.081 AE007871_94(AE007871|pid:none) Agrobacterium tumefaciens str. C5... 41 0.081 CP001359_827(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C... 40 0.11 CP000137_252(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p4... 40 0.11 CP000698_3390(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 40 0.11 CP000759_1285(CP000759|pid:none) Ochrobactrum anthropi ATCC 4918... 40 0.11 CP000157_825(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 35 0.12 CP000509_1199(CP000509|pid:none) Nocardioides sp. JS614, complet... 40 0.14 CP000251_781(CP000251|pid:none) Anaeromyxobacter dehalogenans 2C... 40 0.14 CP000283_3473(CP000283|pid:none) Rhodopseudomonas palustris BisB... 35 0.16 AP009384_1006(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 35 0.16 CP000960_58(CP000960|pid:none) Burkholderia cenocepacia MC0-3 ch... 40 0.18 CP000141_26(CP000141|pid:none) Carboxydothermus hydrogenoformans... 40 0.18 AY009089_10(AY009089|pid:none) Camelpox virus CMS, complete geno... 40 0.18 CP000512_364(CP000512|pid:none) Acidovorax citrulli AAC00-1, com... 40 0.18 CP000949_1133(CP000949|pid:none) Pseudomonas putida W619, comple... 40 0.18 CP000394_904(CP000394|pid:none) Granulibacter bethesdensis CGDNI... 40 0.18 CP001392_301(CP001392|pid:none) Diaphorobacter sp. TPSY, complet... 40 0.18 A83926(A83926) hypothetical protein BH2209 [imported] - Bacillus... 39 0.24 AE008922_2267(AE008922|pid:none) Xanthomonas campestris pv. camp... 39 0.24 CP000519_62(CP000519|pid:none) Mycobacterium sp. KMS plasmid pMK... 39 0.24 CP000854_5199(CP000854|pid:none) Mycobacterium marinum M, comple... 39 0.31 CP001503_1048(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 39 0.31 CP000884_3035(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 39 0.31 CP000390_32(CP000390|pid:none) Mesorhizobium sp. BNC1, complete ... 39 0.31 CP000577_1327(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 39 0.40 CP000769_928(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 38 0.53 CP000325_3564(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 38 0.53 CP000697_1588(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 38 0.53 AM711867_2094(AM711867|pid:none) Clavibacter michiganensis subsp... 38 0.69 CP001131_825(CP001131|pid:none) Anaeromyxobacter sp. K, complete... 38 0.69 AM420293_5513(AM420293|pid:none) Saccharopolyspora erythraea NRR... 38 0.69 CP000759_1552(CP000759|pid:none) Ochrobactrum anthropi ATCC 4918... 38 0.69 CP000301_3641(CP000301|pid:none) Rhodopseudomonas palustris BisB... 38 0.69 AD3126(AD3126) ATP-dependent DNA ligase Atu4632 [imported] - Agr... 32 0.72 CP000143_1266(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 37 0.90 CP000511_5458(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 37 1.5 BX640445_223(BX640445|pid:none) Bordetella bronchiseptica strain... 37 1.5 CP001052_1813(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 37 1.5 CP000539_309(CP000539|pid:none) Acidovorax sp. JS42, complete ge... 37 1.5 AP006618_683(AP006618|pid:none) Nocardia farcinica IFM 10152 DNA... 36 2.0 CP000091_954(CP000091|pid:none) Ralstonia eutropha JMP134 chromo... 36 2.0 CP001074_678(CP001074|pid:none) Rhizobium etli CIAT 652, complet... 36 2.0 CU633750_282(CU633750|pid:none) Cupriavidus taiwanensis str. LMG... 36 2.0 AL591985_625(AL591985|pid:none) Sinorhizobium meliloti 1021 plas... 36 2.0 CP000361_243(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 36 2.0 AP009153_3403(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 36 2.0 CP000319_3693(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 36 2.6 AL009126_1388(AL009126|pid:none) Bacillus subtilis subsp. subtil... 35 3.4 BA000012_6332(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 35 3.4 AE017333_1448(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 35 3.4 CP000480_6097(CP000480|pid:none) Mycobacterium smegmatis str. MC... 35 4.4 CP001359_925(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C... 35 4.4 CP000435_1404(CP000435|pid:none) Synechococcus sp. CC9311, compl... 35 4.5 AP009377_80(AP009377|pid:none) Cryptomeria japonica chloroplast ... 35 5.8 AP010966_79(AP010966|pid:none) Cryptomeria japonica chloroplast ... 35 5.8 CP000820_5058(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 35 5.8 AM902716_3453(AM902716|pid:none) Bordetella petrii strain DSM 12... 35 5.8 DQ867128_1(DQ867128|pid:none) Prunus avium clone pavRPM2 NBS-con... 35 5.8 CP000319_3695(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 35 5.8 DQ870790_1(DQ870790|pid:none) Prunus cerasus var. caproniana clo... 35 5.8 AE008922_105(AE008922|pid:none) Xanthomonas campestris pv. campe... 35 5.8 BT033302_1(BT033302|pid:none) Zea mays full-length cDNA clone ZM... 35 5.8 CP000378_1336(CP000378|pid:none) Burkholderia cenocepacia AU 105... 34 7.6 CP000460_614(CP000460|pid:none) Burkholderia cenocepacia HI2424 ... 34 7.6 AE008923_2374(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 34 7.6 AM039952_2612(AM039952|pid:none) Xanthomonas campestris pv. vesi... 34 7.6 AY316747_148(AY316747|pid:none) Rhizobium sp. NGR234 megaplasmid... 34 9.9 CP000108_827(CP000108|pid:none) Chlorobium chlorochromatii CaD3,... 34 9.9 AJ344068_10(AJ344068|pid:none) Pseudomonas putida plasmid pWW0 c... 34 9.9 CP001131_924(CP001131|pid:none) Anaeromyxobacter sp. K, complete... 34 9.9 AC144375_8(AC144375|pid:none) Medicago truncatula clone mth2-11p... 34 10.0
>BT068552_1(BT068552|pid:none) Zea mays full-length cDNA clone ZM_BFb0302I10 mRNA, complete cds. Length = 452
Score = 235 bits (600), Expect(2) = e-105 Identities = 108/171 (63%), Positives = 140/171 (81%) Frame = +1
Query: 475 RLKKDYMQGMTDSLDLVPIGAWYGKGKRTGTYGAYLLACYDENNEEFQTLCKIGTGFSDE 654 +LKKDYM + DSLDLVPI A+YG+GKRTG +G++LLACYDE NEE+QT+C IGTGFS++ Sbjct: 282 KLKKDYMDSIGDSLDLVPIAAFYGRGKRTGVFGSFLLACYDEQNEEYQTICNIGTGFSEQ 341
Query: 655 QLTTFTSQLKPHLINQPRNQFRFSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILD 834 QL ++ L+ +I +P+ +RF D++ PDVWF PS VWEV AADLSISPVH AA+GI+D Sbjct: 342 QLEERSASLRSKVIEKPKAYYRFGDTMNPDVWFEPSEVWEVKAADLSISPVHRAANGIVD 401
Query: 835 PNKGIALRFPRFIRIRPDKSPEDATSSDQVVDMYQNQKIKSQSSKINEEDD 987 PNKGI+LRFPR +R+R DKSPE AT+SDQV DMY++QKI ++ +E+DD Sbjct: 402 PNKGISLRFPRLLRLRDDKSPEQATTSDQVADMYRSQKINHGYNQEDEDDD 452
Score = 171 bits (433), Expect(2) = e-105 Identities = 84/159 (52%), Positives = 111/159 (69%) Frame = +3
Query: 9 RNLEDYTQKYPDIVANVTKFVGPNVKSFILDCEAVAFDAATKKILSFQVLSTRARKSVQL 188 RN E T KYPD+V V++F VKSF+LDCE VA+D +KIL FQ+LSTRARK V + Sbjct: 127 RNAERNTGKYPDVVDAVSRFRKATVKSFVLDCEIVAYDREKQKILPFQILSTRARKGVTI 186
Query: 189 SQIKVPVCVFAFDLLYLNGQSLIDEPLIKRREHLVENFIASDGVFAFAKYSNISDVNDIQ 368 + IKV VC F FD+LY+NG+ L+ E L RREHL +F GVF A +D+ +IQ Sbjct: 187 NDIKVSVCTFGFDILYINGKPLLQEQLKIRREHLYNSFEEVPGVFKLATAITSNDLEEIQ 246
Query: 369 SYLEEAVEGNCEGLMVKTLKEKSIYEPSRRSYNWLKIKK 485 +L+ AV +CEGL++KTL + + YEP++RS NWLK+KK Sbjct: 247 KFLDTAVNSSCEGLIIKTLDKDATYEPAKRSNNWLKLKK 285
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 1,613,738,996 Number of extensions: 31575680 Number of successful extensions: 84611 Number of sequences better than 10.0: 424 Number of HSP's gapped: 84083 Number of HSP's successfully gapped: 695 Length of query: 353 Length of database: 1,051,180,864 Length adjustment: 129 Effective length of query: 224 Effective length of database: 633,664,753 Effective search space: 141940904672 Effective search space used: 141940904672 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
4 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
2 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |