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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12625-1
Contig ID Contig-U12625-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12625-1 (Contig-U12625-1Q) /CSM_Contig/Contig-U12625-1Q.Seq.d
CAATGTTAGAATTAGTTCATCATTTACAGATTTATTAGAAGATATTAGAC
AATTAGCAGTTTATTTTGAAAAAATGTCAATTTCACCTCATAAAGTAATT
TTTGATCTTTCTTATTGTTTTAGTGAAAATTTCTATTCAACTGGTATAAT
GTTTCAAGTTATATTAAAAGAAGAAAAGCATGAATGTCTTGCTGTTGGTG
GTAGATATGATTCACCACTTAATTTAAATAATAGTAATAATAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAATAATAATAATAGCTATAATAATTATAA
TAATAATAATAATTATAATTATAATTATTATAGTAATTGTTATTTAACAA
ATTTTAATTTACCAATTACTGGATTAAGTGTTGCGATGGATAAGGTCTAT
TCGAGAGAACGTGAATTATATTCACAAAAGAGAAGACAACAATTACCTCC
AACTTTGTCAAGTGAAAGTCAAATGATTGCTCATAAATTCTCAACTCCTG
ATATCTTTGTCATTAGTCTTGGTCCAAACTTATTTTTAGAACGTATTGGT
ATAGTTGGTGATTTGTGTAATGCAGGATTTAATGCTGAAACTATGTATAT
TGAAAATCCAACACCAGAAGAACAACAAGACGCTTCAATCACTTCTGGTG
CTCTTTACATTATCACTATTAAAGAAAAAGGTGCAAAGAAGACAATTAAA
GTTAAAAATATTGAAAAAAGAAGAGAAGATGATGTATCTCGTGATGAAAT
CGTCAAATTTTTTACACTTTCAAATTTTAATTCAAAATCACGTTTAAATA
TATAAAATTACCAAAAAAAATATAAAAAAATATAAAAAAAAAAAATTAAA
ATAATAAAAATAATAAAAATAAAGATAATAGAAAATAAAGATAA
Gap no gap
Contig length 894
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6488310
End point 6487416
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U12625
List of clone(s) 

est1=AHA492Z,1,802
est2=SSI512E,27,895
est3=CHO393Z,138,820
Translated Amino Acid sequence 
NVRISSSFTDLLEDIRQLAVYFEKMSISPHKVIFDLSYCFSENFYSTGIMFQVILKEEKH
ECLAVGGRYDSPLNLNNSNNSSSSSSSSSSNNNNSYNNYNNNNNYNYNYYSNCYLTNFNL
PITGLSVAMDKVYSRERELYSQKRRQQLPPTLSSESQMIAHKFSTPDIFVISLGPNLFLE
RIGIVGDLCNAGFNAETMYIENPTPEEQQDASITSGALYIITIKEKGAKKTIKVKNIEKR
REDDVSRDEIVKFFTLSNFNSKSRLNI*nyqkkykki*kkkikiikiikikiienkd
Translated Amino Acid sequence (All Frames) 
Frame A:
qc*n*fiiyrfirry*tisslf*knvnfts*snf*sfllf**kflfnwynvssyikrrka
*msccww*i*ftt*fk*******************l**l*****l*l*ll**llfnkf*f
tnywikccdg*glfert*iiftkekttitsnfvk*ksndcs*ilns*ylch*swsklifr
tywysw*fv*cri*c*nyvy*ksntrrttrrfnhfwcslhyhy*rkrckedn*s*ky*kk
krr*cis**nrqifytfkf*fkitfkyiklpkki*knikkkn*nnknnknkdnrk*r*


Frame B:
NVRISSSFTDLLEDIRQLAVYFEKMSISPHKVIFDLSYCFSENFYSTGIMFQVILKEEKH
ECLAVGGRYDSPLNLNNSNNSSSSSSSSSSNNNNSYNNYNNNNNYNYNYYSNCYLTNFNL
PITGLSVAMDKVYSRERELYSQKRRQQLPPTLSSESQMIAHKFSTPDIFVISLGPNLFLE
RIGIVGDLCNAGFNAETMYIENPTPEEQQDASITSGALYIITIKEKGAKKTIKVKNIEKR
REDDVSRDEIVKFFTLSNFNSKSRLNI*nyqkkykki*kkkikiikiikikiienkd


Frame C:
mlelvhhlqiy*kildn*qfilkkcqfhlik*fliflivlvkisiqlv*cfkly*kkksm
nvlllvvdmihhli*iiviivvvvvvvvvviiiiaiiiiiiiiiiiiiiivivi*qiliy
qlld*vlrwirsirenvnyihkrednnylqlcqvkvk*llinsqllislslvlvqtyf*n
vlv*lvicvmqdlmlklcilkiqhqknnktlqsllvlftlsllkkkvqrrqlklkilkke
ekmmylvmkssnflhfqiliqnhv*iykitkknikkykkkklk**k**k*r**kiki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12625-1 (Contig-U12625-1Q)
/CSM_Contig/Contig-U12625-1Q.Seq.d
         (894 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12625-1 (Contig-U12625-1Q) /CSM_Contig/Conti...   662  0.0
Contig-U14014-1 (Contig-U14014-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13711-1 (Contig-U13711-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U04729-1 (Contig-U04729-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12578-1 (Contig-U12578-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U11682-1 (Contig-U11682-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U10552-1 (Contig-U10552-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U09002-1 (Contig-U09002-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U11651-1 (Contig-U11651-1Q) /CSM_Contig/Conti...    30  3.9

>Contig-U12625-1 (Contig-U12625-1Q) /CSM_Contig/Contig-U12625-1Q.Seq.d
          Length = 894

 Score =  662 bits (334), Expect = 0.0
 Identities = 334/334 (100%)
 Strand = Plus / Plus

                                                                       
Query: 339 gttatttaacaaattttaatttaccaattactggattaagtgttgcgatggataaggtct 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gttatttaacaaattttaatttaccaattactggattaagtgttgcgatggataaggtct 398

                                                                       
Query: 399 attcgagagaacgtgaattatattcacaaaagagaagacaacaattacctccaactttgt 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 attcgagagaacgtgaattatattcacaaaagagaagacaacaattacctccaactttgt 458

                                                                       
Query: 459 caagtgaaagtcaaatgattgctcataaattctcaactcctgatatctttgtcattagtc 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caagtgaaagtcaaatgattgctcataaattctcaactcctgatatctttgtcattagtc 518

                                                                       
Query: 519 ttggtccaaacttatttttagaacgtattggtatagttggtgatttgtgtaatgcaggat 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttggtccaaacttatttttagaacgtattggtatagttggtgatttgtgtaatgcaggat 578

                                                                       
Query: 579 ttaatgctgaaactatgtatattgaaaatccaacaccagaagaacaacaagacgcttcaa 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttaatgctgaaactatgtatattgaaaatccaacaccagaagaacaacaagacgcttcaa 638

                                             
Query: 639 tcacttctggtgctctttacattatcactattaa 672
           ||||||||||||||||||||||||||||||||||
Sbjct: 639 tcacttctggtgctctttacattatcactattaa 672


 Score =  476 bits (240), Expect = e-134
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgttagaattagttcatcatttacagatttattagaagatattagacaattagcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caatgttagaattagttcatcatttacagatttattagaagatattagacaattagcagt 60

                                                                       
Query: 61  ttattttgaaaaaatgtcaatttcacctcataaagtaatttttgatctttcttattgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttattttgaaaaaatgtcaatttcacctcataaagtaatttttgatctttcttattgttt 120

                                                                       
Query: 121 tagtgaaaatttctattcaactggtataatgtttcaagttatattaaaagaagaaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagtgaaaatttctattcaactggtataatgtttcaagttatattaaaagaagaaaagca 180

                                                                       
Query: 181 tgaatgtcttgctgttggtggtagatatgattcaccacttaatttaaataatagtaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaatgtcttgctgttggtggtagatatgattcaccacttaatttaaataatagtaataa 240


 Score =  167 bits (84), Expect = 3e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                       
Query: 729 atgatgtatctcgtgatgaaatcgtcaaattttttacactttcaaattttaattcaaaat 788
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atgatgtatctcgtgatgaaatcgtcaaattttttacactttcaaattttaattcaaaat 788

                                   
Query: 789 cacgtttaaatatataaaattacc 812
           ||||||||||||||||||||||||
Sbjct: 789 cacgtttaaatatataaaattacc 812


>Contig-U14014-1 (Contig-U14014-1Q) /CSM_Contig/Contig-U14014-1Q.Seq.d
          Length = 152

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 219 ttaatttaaataatagtaata 239
           |||||||||||||||||||||
Sbjct: 21  ttaatttaaataatagtaata 1


>Contig-U13711-1 (Contig-U13711-1Q) /CSM_Contig/Contig-U13711-1Q.Seq.d
          Length = 670

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 220 taatttaaataatagtaataa 240
           |||||||||||||||||||||
Sbjct: 445 taatttaaataatagtaataa 465


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,088
Number of Sequences: 6905
Number of extensions: 12088
Number of successful extensions: 1802
Number of sequences better than 10.0: 214
length of query: 894
length of database: 5,674,871
effective HSP length: 16
effective length of query: 878
effective length of database: 5,564,391
effective search space: 4885535298
effective search space used: 4885535298
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12625-1 (Contig-U12625-1Q) /CSM_Contig/Contig-U12625-1Q.Seq.d
         (894 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347992) Dictyostelium discoideum cDNA clone:dda31h24, 3' ...   581   0.0    3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...   581   0.0    3
(BJ384832) Dictyostelium discoideum cDNA clone:ddc50j23, 3' ...   581   0.0    3
(C90261) Dictyostelium discoideum slug cDNA, clone SSI512.        581   e-168  2
(AU073839) Dictyostelium discoideum slug cDNA, clone SSI512.      424   e-114  1
(DT758563) EST1192412 Aquilegia cDNA library Aquilegia formo...    48   0.57   1
(DT744984) EST1178833 Aquilegia cDNA library Aquilegia formo...    48   0.57   1
(DR952947) EST1144486 Aquilegia cDNA library Aquilegia formo...    48   0.57   1
(DR932141) EST1123680 Aquilegia cDNA library Aquilegia formo...    48   0.57   1
(DR931891) EST1123430 Aquilegia cDNA library Aquilegia formo...    48   0.57   1
(FK866555) 0000099873C19 D. serrata mRNA from different deve...    48   0.57   1
(DU381451) 1098313037988 CHORI-243 Ovis aries genomic clone ...    36   1.7    2
(AC184902) Bos taurus clone CH240-190B5, WORKING DRAFT SEQUE...    40   1.8    3
(BV616387) S215P61616FF10.T0 Clara Pan troglodytes troglodyt...    46   2.3    1
(AB142166) Homo sapiens DNA, STS on chromosome 14, D14S0188i...    46   2.3    1
(AM460434) Vitis vinifera contig VV78X020316.13, whole genom...    46   2.3    1
(DJ468294) Method for analysing genome using microsatellite ...    46   2.3    1
(AL358335) Human chromosome 14 DNA sequence BAC R-2G1 of lib...    46   2.3    1
(AC007496) Homo sapiens chromosome 16 clone RP11-357N13, com...    46   2.3    1
(AL358337) Human chromosome 14 DNA sequence *** IN PROGRESS ...    46   2.3    1
(AC013572) Homo sapiens clone RP11-2G1, WORKING DRAFT SEQUEN...    46   2.3    1
(AC013571) Homo sapiens clone RP11-2F3, WORKING DRAFT SEQUEN...    46   2.3    1
(EE079007) S2B11939 Buds (VvS2) Vitis vinifera cDNA clone S2...    46   2.3    1
(EE078402) S2B11387 Buds (VvS2) Vitis vinifera cDNA clone S2...    46   2.3    1
(EE069351) C3B05584 Clusters 4 cm (VvC3) Vitis vinifera cDNA...    46   2.3    1
(EC994962) WIN1151.C21_N20 Muscat Hamburg pre-veraison berry...    46   2.3    1
(EC973576) WIN1016.C21.1_B07 Muscat Hamburg post-veraison pe...    46   2.3    1
(EC973328) WIN1016.C21_B07 Muscat Hamburg post-veraison peri...    46   2.3    1
(EC952528) WIN0555.C21_P11 Cab Sauv flower, leaf and root no...    46   2.3    1
(EC943325) WIN0528.C21_I10 Cab Sauv flower, leaf and root no...    46   2.3    1
(EC930117) WIN048.C21_H11 Cab Sauv pericarp normalized (WIN0...    46   2.3    1
(EC609229) Y41B07 YLX600 Hevea brasiliensis cDNA clone Y41B0...    46   2.3    1
(EC606002) Y03D06 YLX600 Hevea brasiliensis cDNA clone Y03D0...    46   2.3    1
(EC605420) Y10H09 YLX600 Hevea brasiliensis cDNA clone Y10H0...    46   2.3    1
(DT031612) VVL059H01_684850 CabSau Berry Postveraison Mixed ...    46   2.3    1
(CB347158) CAB2SG0002_IaR_E11 Cabernet Sauvignon Berry - CAB...    46   2.3    1
(CB346587) CAB2SG0002IF_E11 Cabernet Sauvignon Berry - CAB2S...    46   2.3    1
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    36   6.3    6
(AC160130) Mus musculus BAC clone RP23-254K13 from chromosom...    44   9.0    1
(AC153643) Medicago truncatula chromosome 8 clone mth2-109d3...    44   9.0    1
(AC149079) Medicago truncatula chromosome 8 clone mth2-75i8,...    44   9.0    1
(AC107058) Homo sapiens BAC clone RP11-633G11 from 4, comple...    44   9.0    1
(AC095692) Rattus norvegicus clone CH230-9D3, WORKING DRAFT ...    44   9.0    1
(CU915422) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.0    1
(CU407120) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.0    1
(AC220736) Bos taurus clone CH240-348F7, WORKING DRAFT SEQUE...    44   9.0    1
(AC180384) Strongylocentrotus purpuratus clone R3-3113O12, W...    44   9.0    1
(AC013670) Homo sapiens clone RP11-20H5, WORKING DRAFT SEQUE...    44   9.0    1
(AM626546) Entamoeba dispar GSS, clone dispar12c07.q1k.            44   9.0    1
(EG167573) MSAM266465_1339_0105 LCM-dissected maize inbred l...    44   9.0    1
(DY885523) CeleSEQ807 Cunninghamella elegans pBluescript (Ec...    44   9.0    1
(AE015927) Clostridium tetani E88, complete genome.                44   9.0    1

>(BJ347992) Dictyostelium discoideum cDNA clone:dda31h24, 3' end,
           single read.
          Length = 802

 Score =  581 bits (293), Expect(3) = 0.0
 Identities = 293/293 (100%)
 Strand = Plus / Minus


Query: 378 gtgttgcgatggataaggtctattcgagagaacgtgaattatattcacaaaagagaagac 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgttgcgatggataaggtctattcgagagaacgtgaattatattcacaaaagagaagac 366


Query: 438 aacaattacctccaactttgtcaagtgaaagtcaaatgattgctcataaattctcaactc 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aacaattacctccaactttgtcaagtgaaagtcaaatgattgctcataaattctcaactc 306


Query: 498 ctgatatctttgtcattagtcttggtccaaacttatttttagaacgtattggtatagttg 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctgatatctttgtcattagtcttggtccaaacttatttttagaacgtattggtatagttg 246


Query: 558 gtgatttgtgtaatgcaggatttaatgctgaaactatgtatattgaaaatccaacaccag 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtgatttgtgtaatgcaggatttaatgctgaaactatgtatattgaaaatccaacaccag 186


Query: 618 aagaacaacaagacgcttcaatcacttctggtgctctttacattatcactatt 670
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aagaacaacaagacgcttcaatcacttctggtgctctttacattatcactatt 133

 Score =  476 bits (240), Expect(3) = 0.0
 Identities = 240/240 (100%)
 Strand = Plus / Minus


Query: 1   caatgttagaattagttcatcatttacagatttattagaagatattagacaattagcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caatgttagaattagttcatcatttacagatttattagaagatattagacaattagcagt 743


Query: 61  ttattttgaaaaaatgtcaatttcacctcataaagtaatttttgatctttcttattgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttattttgaaaaaatgtcaatttcacctcataaagtaatttttgatctttcttattgttt 683


Query: 121 tagtgaaaatttctattcaactggtataatgtttcaagttatattaaaagaagaaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tagtgaaaatttctattcaactggtataatgtttcaagttatattaaaagaagaaaagca 623


Query: 181 tgaatgtcttgctgttggtggtagatatgattcaccacttaatttaaataatagtaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgaatgtcttgctgttggtggtagatatgattcaccacttaatttaaataatagtaataa 563

 Score = 50.1 bits (25), Expect(3) = 0.0
 Identities = 25/25 (100%)
 Strand = Plus / Minus


Query: 730 tgatgtatctcgtgatgaaatcgtc 754
           |||||||||||||||||||||||||
Sbjct: 73  tgatgtatctcgtgatgaaatcgtc 49

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 692,256,414
Number of extensions: 42822442
Number of successful extensions: 3633217
Number of sequences better than 10.0: 53
Length of query: 894
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 870
Effective length of database: 97,308,875,965
Effective search space: 84658722089550
Effective search space used: 84658722089550
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 4
Homology vs Protein 
Query= Contig-U12625-1 (Contig-U12625-1Q) /CSM_Contig/Contig-U12625-1Q.Seq.d
         (894 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940347_1021(CR940347|pid:none) Theileria annulata strain Ankar...    68   4e-10
(Q86AS6) RecName: Full=Histidyl-tRNA synthetase, cytoplasmic;   ...    60   1e-07
(Q5R5E5) RecName: Full=Probable histidyl-tRNA synthetase, mitoch...    54   9e-06
AK295219_1(AK295219|pid:none) Homo sapiens cDNA FLJ53452 complet...    54   9e-06
BC097969_1(BC097969|pid:none) Rattus norvegicus histidyl-tRNA sy...    54   9e-06
AY995220_1(AY995220|pid:none) Homo sapiens histidyl-tRNA synthet...    53   1e-05
BC020088_1(BC020088|pid:none) Mus musculus histidyl-tRNA synthet...    53   2e-05
AK293154_1(AK293154|pid:none) Homo sapiens cDNA FLJ53703 complet...    53   2e-05
AK302295_1(AK302295|pid:none) Homo sapiens cDNA FLJ58554 complet...    53   2e-05
(P12081) RecName: Full=Histidyl-tRNA synthetase, cytoplasmic;   ...    53   2e-05
AK124831_1(AK124831|pid:none) Homo sapiens cDNA FLJ42841 fis, cl...    53   2e-05
BC102470_1(BC102470|pid:none) Bos taurus histidyl-tRNA synthetas...    52   3e-05
AK146922_1(AK146922|pid:none) Mus musculus 17 days embryo kidney...    52   3e-05
AK150081_1(AK150081|pid:none) Mus musculus bone marrow macrophag...    52   3e-05
AK152329_1(AK152329|pid:none) Mus musculus bone marrow macrophag...    52   3e-05
AK088824_1(AK088824|pid:none) Mus musculus 2 days neonate thymus...    52   3e-05
(Q5R4R2) RecName: Full=Histidyl-tRNA synthetase, cytoplasmic;   ...    52   3e-05
(A5D7V9) RecName: Full=Probable histidyl-tRNA synthetase, mitoch...    51   5e-05
AK293269_1(AK293269|pid:none) Homo sapiens cDNA FLJ50437 complet...    51   6e-05
(P49590) RecName: Full=Probable histidyl-tRNA synthetase, mitoch...    51   6e-05
AK293390_1(AK293390|pid:none) Homo sapiens cDNA FLJ50406 complet...    51   6e-05
AL512563_1(AL512563|pid:none) S.pombe chromosome II p1 p18G5.          50   8e-05
AC117076_31(AC117076|pid:none) Dictyostelium discoideum chromoso...    50   1e-04
(Q550L8) RecName: Full=Probable serine/threonine-protein kinase ...    50   1e-04
(Q558U1) RecName: Full=Probable serine/threonine-protein kinase ...    50   1e-04
AK011685_1(AK011685|pid:none) Mus musculus 10 days embryo whole ...    50   1e-04
AK312976_1(AK312976|pid:none) Homo sapiens cDNA, FLJ93437, highl...    50   1e-04
BC076748_1(BC076748|pid:none) Xenopus laevis hypothetical protei...    49   2e-04
CR855211_5(CR855211|pid:none) Oryza sativa genomic DNA, chromoso...    49   3e-04
AP008210_1191(AP008210|pid:none) Oryza sativa (japonica cultivar...    49   3e-04
CR382128_585(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    49   3e-04
AL662938_5(AL662938|pid:none) Oryza sativa genomic DNA, chromoso...    49   3e-04
(Q99KK9) RecName: Full=Probable histidyl-tRNA synthetase, mitoch...    47   7e-04
AK229577_1(AK229577|pid:none) Arabidopsis thaliana mRNA for puta...    46   0.001
BC089973_1(BC089973|pid:none) Rattus norvegicus histidyl-tRNA sy...    45   0.004
EF215346_1(EF215346|pid:none) Callithrix jacchus clone N09-48.2_...    44   0.007
(Q9LX30) RecName: Full=Probable serine/threonine-protein kinase ...    43   0.012
AJ720198_1(AJ720198|pid:none) Gallus gallus mRNA for hypothetica...    42   0.021
CR382139_520(CR382139|pid:none) Debaryomyces hansenii strain CBS...    40   0.11
BC004665_1(BC004665|pid:none) Mus musculus histidyl-tRNA synthet...    39   0.31
(Q8NQ07) RecName: Full=Histidyl-tRNA synthetase;          EC=6.1...    38   0.52
AP009044_1726(AP009044|pid:none) Corynebacterium glutamicum R DN...    38   0.52
CU928171_265(CU928171|pid:none) Kluyveromyces thermotolerans str...    37   1.2
(Q2JUD2) RecName: Full=ATP phosphoribosyltransferase regulatory ...    36   1.5
(Q2JMG5) RecName: Full=ATP phosphoribosyltransferase regulatory ...    36   1.5
(Q5HNS1) RecName: Full=Histidyl-tRNA synthetase;          EC=6.1...    36   2.0
FN392321_868(FN392321|pid:none) Pichia pastoris GS115 chromosome...    36   2.0
(Q4JVE8) RecName: Full=Histidyl-tRNA synthetase;          EC=6.1...    35   3.4
CP000918_2070(CP000918|pid:none) Streptococcus pneumoniae 70585,...    35   4.4
FN392321_1077(FN392321|pid:none) Pichia pastoris GS115 chromosom...    34   5.8
AB073929_2(AB073929|pid:none) Sporosarcina globispora ctsU, ctsV...    34   7.5
(B1L6B4) RecName: Full=Histidyl-tRNA synthetase;          EC=6.1...    34   7.5
FM992688_766(FM992688|pid:none) Candida dubliniensis CD36 chromo...    34   7.5
CR380954_45(CR380954|pid:none) Candida glabrata strain CBS138 ch...    33   9.9
(Q2JRX6) RecName: Full=Histidyl-tRNA synthetase;          EC=6.1...    33   9.9
AM270385_33(AM270385|pid:none) Aspergillus niger contig An17c003...    33   9.9
(Q8RAI8) RecName: Full=Histidyl-tRNA synthetase;          EC=6.1...    33   9.9

>CR940347_1021(CR940347|pid:none) Theileria annulata strain Ankara
           isolate clone C9, *** SEQUENCING IN PROGRESS ***.
          Length = 583

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 7/252 (2%)
 Frame = +2

Query: 20  SFTDLLEDIRQLAVYFEKMSISPHKVIFDLSYCFSENFYSTGIMFQVILKEEKHECLAVG 199
           S +++L+D+  L  Y E   +   +V+FD+S     ++Y TG++F+  LK+E    +  G
Sbjct: 365 SDSNVLDDMELLWSYLESFGVKESEVMFDMSLARGLDYY-TGVIFEAFLKDEDIGSVGAG 423

Query: 200 GRYDSPLNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYLTNFNLPITGLS 379
           GRYD  + +                                        +  N+P  G+S
Sbjct: 424 GRYDGLIGM---------------------------------------FSGKNVPSVGMS 444

Query: 380 VAMDKVYSRERELYSQKRRQQLPPTLSSESQMIAHKFSTPDIFVISLG-PNLFLERIGIV 556
           V +++++            + +P   S +           D+FV S+G P +F ER+ +V
Sbjct: 445 VGIERLF------------RTMPKQNSGD---------LTDVFVCSVGSPQMFFERMKLV 483

Query: 557 GDLCNAGFNAETMYIENPTPEEQQDASITSGALYIITIKEKGAK-KTIKVKNI---EKRR 724
           G L   G  AE +Y  N    +Q DA+   G   ++ + +   +  T+K+K +   E+ R
Sbjct: 484 GMLWTHGIRAEFLYNVNANLRKQLDAATDKGVSLMVLVGDSELETDTVKIKRLSYNEEER 543

Query: 725 EDD--VSRDEIV 754
            DD  V R +++
Sbjct: 544 LDDLTVKRSDLI 555

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 884,972,359
Number of extensions: 13677418
Number of successful extensions: 43338
Number of sequences better than 10.0: 57
Number of HSP's gapped: 43323
Number of HSP's successfully gapped: 59
Length of query: 298
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 170
Effective length of database: 636,901,312
Effective search space: 108273223040
Effective search space used: 108273223040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.52  gvh: 0.38  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U12625-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0