>Contig-U12609-1 (Contig-U12609-1Q) /CSM_Contig/Contig-U12609-1Q.Seq.d
AAAAACAAAAACAAAAACAAACAAAAACAAAAACAAAAACAAAAACAAAA
ACAAAAACAAAAACAAAAACAAAAACAAAAACGAAAACAAAACAAAAACA
AAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAATATATATATATA
AAATAAAATGTCTGATTATATGATGAATGATGATTCCCAAGATAATCCAC
ATGCAGATATATCGCAAGAGGATGTTTGGACAGTTATTAGTGCATATTTT
CAAGAGAAAGGTTTAGTTAGACAACAATTAGATTCATTTGATGAGTTTAT
TCAAAATACAATGCAAGAAATTATAGATGAATCACCACCAATTACATTAA
GACCTGAATCACAACATCATCCAGGTCAAGCAGTAGTTAGTAATAATGTA
TCAACATTTTCAGTTAAATTTGGACAAATTTATCTTAGTAAACCAACAGC
AGAAATTGATGGTGTATCACAACAAGTTACACCAAATCAAGCAAGAATTA
GAAATTTAACCTATTCAGCACCATTATTTGTGGATATTACGAAAACGGTG
ATGACAGGATCAAAGAGTAAAGGTGATGAAAGAAGAACCGATGAGGTATT
AAAGAGAATTTTCATTGGTAAAGTACCAATTATGTTACGTTCACAATATT
GTATGTTGAATGAAGCAGATGATAGAGATTTAACAACGATGGGAGAATGT
TCATTCGATCAAGGCGGTTATTTCATCATTAATGGTAGTGAAAAGGTATT
GATTGCACAAGAGAAGATGAACAACAATCATGTTTACGTATTTAAGAAAT
CACCACCATCAAAATATTCATATGTTGCAGAGATTCGTTCTTGTCAAGAG
ACAGGTTCAAGACCAACCTCAACAATGTATTTGAAAATGTTACACAATAC
CAACAAGGGTCCAGTGGGTATCAAAGCCACTGTACCCTACATTAAACAAG
ATGTACCCGTTATCATTGTCTTTAGAGCATTGGGTTTTGTTGCCGATAAA
GATATTTTAGAACATATTTGTTATGACTTCAAGGATGCCCAAATGATGGA
TCTTATGAGACCATCACTCGAGGAGTCCTTTGTCATTCAATCACAAGAGG
TTGCTTTGGATTATTTGGGTAAACGTGGTTCCACAATGGGTACTCGTGAA
CAACGTATCAAATTCGCTCGTGAAGTATTACAAAAGGAAATGTTACCACA
TGTTAGTGTCGCTGAATTCTATGAAACAAAGAAAGCATTTTACTTTGGTT
ATATCACTCATCGTCTTTTATTGGCTTCACTTGAAAGACGTCCATTGGAT
GATCGTGATCATTTTGCAAATAAACGTTTGGATTTGGCTGGTCCACTACT
TGGTACACTTTTCCGTCAACTTTTTAAAAAACTTACAAAAGATGTCCGTC
TTTATCTTCAACGTTGTATAGATAAAGATAAAGAATTCATTGCATCATCT
GCTGTTAAATCCAAAACAATAACAAGTGGTTTGAAATATTCATTGGCAAC
TGGTAATTGGGGTTCTTCAAAGAGTGGTGGCACAAAGAGTGGTGTAGCTC
AAGTATTGAATCGTTTAACTTCTGCCTCAACATTATCTCATTTACGTCGT
TTGAATACACCAATCGGTAGAGAGGGTAAATTAGCAAAACCACGTCAACT
TCATAACACTCATTGGGGTATCGTTTGTCCATCCGAAACACCAGAAGGTC
AAGCATGTGGTTTGGTAAAGAATCTTGCTATGATGTCTTACATTTCTGTA
GGTTCAGCATCTCAACCAATTTTAGAGTTTCTTGAAGAATGGACAACAGA
GAATCTCGAGGAGATTAGTGATCTCTCTTCAATTTTCTCTGCTACAAAGA
TCTTTGTAAATGGTATGTGGGTAGGTATTCATCATCAACCAGATAAGTTA
TTAAGTACCCTTCGTTTATTGCGTCGTTGTGGTGATGTATCCGTAGAGGT
TTCAGTTGTTAGAGATATTCGTGAGAAGGAATTAAGATTGTACACTGATC
CTGGTAGATGTT

est1=SHF407F,1,618
est2=CHM223F,86,712
est3=AHA856F,118,713
est4=SHK610F,455,1071
est5=AHF591F,502,1094
est6=AHN418F,506,1096
est7=VHG502F,904,1505
est8=AHM462F,998,1622
est9=CHK802F,1015,1543
est10=AFI586F,1421,2013

ktktktnknknknknknknknknknknenktktktktktktktktniyi*NKMSDYMMND
DSQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPES
QHHPGQAVVSNNVSTFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYSAPLFVDIT
KTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGY
FIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNT
NKGPVGIKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESF
VIQSQEVALDYLGKRGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYITH
RLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFI
ASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTSASTLSHLRRLNTPIGR
EGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTE
NLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKE
LRLYTDPGRC

Frame A:
knknknkqkqkqkqkqkqkqkqkqkqkrkqnknknknknknknknkyiyik*nv*lyde*
*fpr*stcryiargcldsy*cifsrerfs*ttirfi**vyskynarnyr*ittnyikt*i
ttssrssss***cinifs*iwtnls**tnsrn*wcittsytksskn*kfnlfstiicgyy
engddrike*r**kknr*gikenfhw*stnyvtftilyve*sr**rfnndgrmfirsrrl
fhh*w**kgidctredeqqsclri*eittikificcrdsflsrdrfktnlnnvfenvtqy
qqgssgyqshctlh*trctryhcl*sigfccr*ryfrtyll*lqgcpndgsyetitrgvl
chsitrgcfglfg*twfhngys*ttyqirs*sitkgnvttc*cr*il*nkesillwlyhs
ssfigft*ktsig*s*sfck*tfgfgwsttwytfpstf*ktykrcpslsstlyr*r*rih
ciicc*iqnnnkwfeifignw*lgffkewwhkewcsssiesfnfclniisftsfeytnr*
rg*iskttsts*hslgyrlsirntrrssmwfgkescydvlhfcrfsistnfrvs*rmdnr
esrgd**slfnflcykdlckwyvgryssstr*vikypsfiaslw*cirrgfsc*rys*eg
ikivh*sw*m


Frame B:
ktktktnknknknknknknknknknknenktktktktktktktktniyi*NKMSDYMMND
DSQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPES
QHHPGQAVVSNNVSTFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYSAPLFVDIT
KTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGY
FIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNT
NKGPVGIKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESF
VIQSQEVALDYLGKRGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYITH
RLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFI
ASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTSASTLSHLRRLNTPIGR
EGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTE
NLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKE
LRLYTDPGRC


Frame C:
kqkqkqtktktktktktktktktktktktkqkqkqkqkqkqkqkqiyiykikclii**mm
ipkiihmqiyrkrmfgqllvhifkrkv*ldnn*ihlmslfkiqckkl*mnhhqlh*dlnh
niiqvkq*lvimyqhfqlnldkfilvnqqqklmvyhnklhqikqelei*piqhhylwilr
kr**qdqrvkvmkeepmry*refslvkyqlcyvhnivc*mkqmiei*qrwenvhsikavi
sslmvvkry*lhkrr*ttimftylrnhhhqnihmlqrfvlvkrqvqdqpqqci*kcytip
trvqwvskplyptlnkmyplslslehwvllpikif*nifvmtsrmpk*wil*dhhsrspl
sfnhkrllwiiwvnvvpqwvlvnnvsnslvkyykrkcyhmlvslnsmkqrkhftlvisli
vfywlhlkdvhwmiviilqinvwiwlvhylvhfsvnflknlqkmsvfifnvv*ikiknsl
hhlllnpkq*qvv*nihwqlvigvlqrvvaqrvv*lky*iv*llpqhyliyvv*ihqsve
rvn*qnhvnfitligvsfvhpkhqkvkhvvw*rill*cltfl*vqhlnqf*sflkngqqr
isrrlvislqfsllqrsl*mvcg*vfiinqisy*vpfvycvvvvmyp*rfqlleifvrrn
*dctlilvdv

Query= Contig-U12609-1 (Contig-U12609-1Q)
/CSM_Contig/Contig-U12609-1Q.Seq.d
         (2012 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12609-1 (Contig-U12609-1Q) /CSM_Contig/Conti...  3691  0.0
Contig-U14326-1 (Contig-U14326-1Q) /CSM_Contig/Conti...    38  0.036
Contig-U09456-1 (Contig-U09456-1Q) /CSM_Contig/Conti...    38  0.036
Contig-U13532-1 (Contig-U13532-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U13416-1 (Contig-U13416-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U08726-1 (Contig-U08726-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U13839-1 (Contig-U13839-1Q) /CSM_Contig/Conti...    34  0.57
Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Conti...    34  0.57
Contig-U11754-1 (Contig-U11754-1Q) /CSM_Contig/Conti...    34  0.57
Contig-U11471-1 (Contig-U11471-1Q) /CSM_Contig/Conti...    34  0.57

>Contig-U12609-1 (Contig-U12609-1Q) /CSM_Contig/Contig-U12609-1Q.Seq.d
          Length = 2012

 Score = 3691 bits (1862), Expect = 0.0
 Identities = 1862/1862 (100%)
 Strand = Plus / Plus

                                                                        
Query: 151  aaataaaatgtctgattatatgatgaatgatgattcccaagataatccacatgcagatat 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151  aaataaaatgtctgattatatgatgaatgatgattcccaagataatccacatgcagatat 210

                                                                        
Query: 211  atcgcaagaggatgtttggacagttattagtgcatattttcaagagaaaggtttagttag 270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211  atcgcaagaggatgtttggacagttattagtgcatattttcaagagaaaggtttagttag 270

                                                                        
Query: 271  acaacaattagattcatttgatgagtttattcaaaatacaatgcaagaaattatagatga 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271  acaacaattagattcatttgatgagtttattcaaaatacaatgcaagaaattatagatga 330

                                                                        
Query: 331  atcaccaccaattacattaagacctgaatcacaacatcatccaggtcaagcagtagttag 390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331  atcaccaccaattacattaagacctgaatcacaacatcatccaggtcaagcagtagttag 390

                                                                        
Query: 391  taataatgtatcaacattttcagttaaatttggacaaatttatcttagtaaaccaacagc 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391  taataatgtatcaacattttcagttaaatttggacaaatttatcttagtaaaccaacagc 450

                                                                        
Query: 451  agaaattgatggtgtatcacaacaagttacaccaaatcaagcaagaattagaaatttaac 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451  agaaattgatggtgtatcacaacaagttacaccaaatcaagcaagaattagaaatttaac 510

                                                                        
Query: 511  ctattcagcaccattatttgtggatattacgaaaacggtgatgacaggatcaaagagtaa 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511  ctattcagcaccattatttgtggatattacgaaaacggtgatgacaggatcaaagagtaa 570

                                                                        
Query: 571  aggtgatgaaagaagaaccgatgaggtattaaagagaattttcattggtaaagtaccaat 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571  aggtgatgaaagaagaaccgatgaggtattaaagagaattttcattggtaaagtaccaat 630

                                                                        
Query: 631  tatgttacgttcacaatattgtatgttgaatgaagcagatgatagagatttaacaacgat 690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631  tatgttacgttcacaatattgtatgttgaatgaagcagatgatagagatttaacaacgat 690

                                                                        
Query: 691  gggagaatgttcattcgatcaaggcggttatttcatcattaatggtagtgaaaaggtatt 750
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  gggagaatgttcattcgatcaaggcggttatttcatcattaatggtagtgaaaaggtatt 750

                                                                        
Query: 751  gattgcacaagagaagatgaacaacaatcatgtttacgtatttaagaaatcaccaccatc 810
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  gattgcacaagagaagatgaacaacaatcatgtttacgtatttaagaaatcaccaccatc 810

                                                                        
Query: 811  aaaatattcatatgttgcagagattcgttcttgtcaagagacaggttcaagaccaacctc 870
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  aaaatattcatatgttgcagagattcgttcttgtcaagagacaggttcaagaccaacctc 870

                                                                        
Query: 871  aacaatgtatttgaaaatgttacacaataccaacaagggtccagtgggtatcaaagccac 930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871  aacaatgtatttgaaaatgttacacaataccaacaagggtccagtgggtatcaaagccac 930

                                                                        
Query: 931  tgtaccctacattaaacaagatgtacccgttatcattgtctttagagcattgggttttgt 990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931  tgtaccctacattaaacaagatgtacccgttatcattgtctttagagcattgggttttgt 990

                                                                        
Query: 991  tgccgataaagatattttagaacatatttgttatgacttcaaggatgcccaaatgatgga 1050
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  tgccgataaagatattttagaacatatttgttatgacttcaaggatgcccaaatgatgga 1050

                                                                        
Query: 1051 tcttatgagaccatcactcgaggagtcctttgtcattcaatcacaagaggttgctttgga 1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 tcttatgagaccatcactcgaggagtcctttgtcattcaatcacaagaggttgctttgga 1110

                                                                        
Query: 1111 ttatttgggtaaacgtggttccacaatgggtactcgtgaacaacgtatcaaattcgctcg 1170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 ttatttgggtaaacgtggttccacaatgggtactcgtgaacaacgtatcaaattcgctcg 1170

                                                                        
Query: 1171 tgaagtattacaaaaggaaatgttaccacatgttagtgtcgctgaattctatgaaacaaa 1230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 tgaagtattacaaaaggaaatgttaccacatgttagtgtcgctgaattctatgaaacaaa 1230

                                                                        
Query: 1231 gaaagcattttactttggttatatcactcatcgtcttttattggcttcacttgaaagacg 1290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 gaaagcattttactttggttatatcactcatcgtcttttattggcttcacttgaaagacg 1290

                                                                        
Query: 1291 tccattggatgatcgtgatcattttgcaaataaacgtttggatttggctggtccactact 1350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 tccattggatgatcgtgatcattttgcaaataaacgtttggatttggctggtccactact 1350

                                                                        
Query: 1351 tggtacacttttccgtcaactttttaaaaaacttacaaaagatgtccgtctttatcttca 1410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 tggtacacttttccgtcaactttttaaaaaacttacaaaagatgtccgtctttatcttca 1410

                                                                        
Query: 1411 acgttgtatagataaagataaagaattcattgcatcatctgctgttaaatccaaaacaat 1470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 acgttgtatagataaagataaagaattcattgcatcatctgctgttaaatccaaaacaat 1470

                                                                        
Query: 1471 aacaagtggtttgaaatattcattggcaactggtaattggggttcttcaaagagtggtgg 1530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 aacaagtggtttgaaatattcattggcaactggtaattggggttcttcaaagagtggtgg 1530

                                                                        
Query: 1531 cacaaagagtggtgtagctcaagtattgaatcgtttaacttctgcctcaacattatctca 1590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 cacaaagagtggtgtagctcaagtattgaatcgtttaacttctgcctcaacattatctca 1590

                                                                        
Query: 1591 tttacgtcgtttgaatacaccaatcggtagagagggtaaattagcaaaaccacgtcaact 1650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 tttacgtcgtttgaatacaccaatcggtagagagggtaaattagcaaaaccacgtcaact 1650

                                                                        
Query: 1651 tcataacactcattggggtatcgtttgtccatccgaaacaccagaaggtcaagcatgtgg 1710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 tcataacactcattggggtatcgtttgtccatccgaaacaccagaaggtcaagcatgtgg 1710

                                                                        
Query: 1711 tttggtaaagaatcttgctatgatgtcttacatttctgtaggttcagcatctcaaccaat 1770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 tttggtaaagaatcttgctatgatgtcttacatttctgtaggttcagcatctcaaccaat 1770

                                                                        
Query: 1771 tttagagtttcttgaagaatggacaacagagaatctcgaggagattagtgatctctcttc 1830
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 tttagagtttcttgaagaatggacaacagagaatctcgaggagattagtgatctctcttc 1830

                                                                        
Query: 1831 aattttctctgctacaaagatctttgtaaatggtatgtgggtaggtattcatcatcaacc 1890
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 aattttctctgctacaaagatctttgtaaatggtatgtgggtaggtattcatcatcaacc 1890

                                                                        
Query: 1891 agataagttattaagtacccttcgtttattgcgtcgttgtggtgatgtatccgtagaggt 1950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 agataagttattaagtacccttcgtttattgcgtcgttgtggtgatgtatccgtagaggt 1950

                                                                        
Query: 1951 ttcagttgttagagatattcgtgagaaggaattaagattgtacactgatcctggtagatg 2010
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 ttcagttgttagagatattcgtgagaaggaattaagattgtacactgatcctggtagatg 2010

              
Query: 2011 tt 2012
            ||
Sbjct: 2011 tt 2012


 Score = 32.2 bits (16), Expect = 2.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 1843 tacaaagatctttgta 1858
            ||||||||||||||||
Sbjct: 1858 tacaaagatctttgta 1843


>Contig-U14326-1 (Contig-U14326-1Q) /CSM_Contig/Contig-U14326-1Q.Seq.d
          Length = 532

 Score = 38.2 bits (19), Expect = 0.036
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1496 gcaactggtaattggggtt 1514
            |||||||||||||||||||
Sbjct: 392  gcaactggtaattggggtt 410


>Contig-U09456-1 (Contig-U09456-1Q) /CSM_Contig/Contig-U09456-1Q.Seq.d
          Length = 870

 Score = 38.2 bits (19), Expect = 0.036
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1178 ttacaaaaggaaatgttac 1196
            |||||||||||||||||||
Sbjct: 390  ttacaaaaggaaatgttac 408


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,396
Number of Sequences: 6905
Number of extensions: 18396
Number of successful extensions: 1738
Number of sequences better than 10.0: 146
length of query: 2012
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1996
effective length of database: 5,564,391
effective search space: 11106524436
effective search space used: 11106524436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U12609-1 (Contig-U12609-1Q) /CSM_Contig/Contig-U12609-1Q.Seq.d
         (2012 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ397090) Dictyostelium discoideum cDNA clone:dds45c04, 5' ...  1223   0.0    1
(BJ333450) Dictyostelium discoideum cDNA clone:dda42e23, 5' ...  1176   0.0    1
(BJ337324) Dictyostelium discoideum cDNA clone:dda57d06, 5' ...  1172   0.0    1
(BJ336926) Dictyostelium discoideum cDNA clone:dda55l16, 5' ...  1166   0.0    2
(BJ327028) Dictyostelium discoideum cDNA clone:dda18k21, 5' ...  1166   0.0    1
(BJ330776) Dictyostelium discoideum cDNA clone:dda32p14, 5' ...  1100   0.0    1
(BJ368313) Dictyostelium discoideum cDNA clone:ddc46m06, 5' ...  1072   0.0    1
(BJ367521) Dictyostelium discoideum cDNA clone:ddc43d02, 5' ...  1041   0.0    1
(BJ421839) Dictyostelium discoideum cDNA clone:ddv44c01, 5' ...   605   0.0    2
(BJ394193) Dictyostelium discoideum cDNA clone:dds34n02, 5' ...   904   0.0    1
(U28403) Lycopersicon esculentum RNA polymerase II subunit 2...    86   8e-51  6
(EF014398) Mucor hiemalis RNA polymerase II second largest s...    90   4e-39  7
(EF014412) Neocallimastix frontalis RNA polymerase II second...   135   9e-39  4
(DQ020641) Petunia x hybrida RNA polymerase II second larges...    76   8e-37  5
(EF014411) Neocallimastix frontalis RNA polymerase II second...   113   1e-34  6
(DQ017114) Homalocladium platycladum RNA polymerase II secon...    82   3e-32  5
(EF014397) Furculomyces boomerangus RNA polymerase II second...    84   1e-31  7
(DQ020640) Nicotiana sylvestris RNA polymerase II second lar...    70   7e-31  5
(AY497611) Candida norvegica strain CBS 4239 RNA polymerase ...   101   2e-30  4
(EF599471) Nakazawaea holstii isolate 4140b2 DNA-dependent R...   105   4e-27  2
(DQ020639) Lycopersicon esculentum RNA polymerase II second ...    78   9e-27  6
(EF599473) Candida inconspicua isolate 180b2 DNA-dependent R...   103   2e-26  2
(DQ020638) Petunia x hybrida RNA polymerase II second larges...    90   8e-26  4
(DQ020636) Nicotiana sylvestris RNA polymerase II second lar...    90   8e-26  4
(BP910019) Solanum lycopersicum cDNA, clone: LC18AE05, 5' en...    86   1e-25  2
(DQ847519) Wallemia ichthyophaga isolate AFTOL-ID 2119 RNA p...    84   4e-24  3
(DQ058633) Liquidambar acalycina RNA polymerase II second la...    70   6e-24  5
(DJ131793) Method for identification of useful proteins deri...    56   2e-22  6
(DQ017100) Dicentra formosa RNA polymerase II second largest...    76   3e-22  3
(EF599485) Torulaspora delbrueckii isolate n133b2 DNA-depend...    70   1e-21  4
(AF107788) Issatchenkia orientalis DNA-dependent RNA polymer...    48   1e-21  7
(EF014399) Basidiobolus ranarum RNA polymerase II second lar...    74   3e-20  5
(DQ058629) Astilbe sp. Yoshikawa s.n. RNA polymerase II seco...    72   4e-20  5
(DQ058627) Rhododendron macrophyllum RNA polymerase II secon...    80   5e-20  4
(DQ058635) Spinacia oleracea RNA polymerase II second larges...    56   4e-19  5
(DQ058625) Camellia japonica RNA polymerase II second larges...    80   5e-19  2
(EF599482) Kazachstania slooffiae isolate 2419b2 DNA-depende...    74   5e-19  3
(AY485631) Pneumocystis carinii DNA-dependent RNA polymerase...   100   1e-18  3
(AX829626) Sequence 346 from Patent WO03072602.                    56   2e-17  5
(AX818596) Sequence 346 from Patent EP1338608.                     56   2e-17  5
(AX594738) Sequence 392 from Patent EP1258494.                     56   2e-17  5
(DJ210678) Method for identification of useful proteins deri...    56   2e-17  5
(AY485612) Candida glabrata DNA-dependent RNA polymerase II ...    80   4e-17  4
(EF599455) Candida fennica isolate WM 793 DNA-dependent RNA ...    84   4e-17  2
(AY497617) Candida parapsilosis strain CBS 604 RNA polymeras...    96   4e-17  2
(DQ332682) Synthetic construct Saccharomyces cerevisiae clon...    56   2e-16  5
(EA397242) Sequence 46066 from patent US 7314974.                  56   2e-16  5
(DQ472730) Kuehneromyces rostratus isolate AFTOL-ID 1676 RNA...    78   4e-16  3
(M15693) Saccharomyces cerevisiae RNA polymerase II, 140 kd ...    56   5e-16  5
(Z75059) S.cerevisiae chromosome XV reading frame ORF YOR151c.     56   6e-16  5
(EF599483) Candida humilis isolate 5658b2 DNA-dependent RNA ...    56   1e-15  3
(Z19120) A.thaliana mRNA for RNA polymerase II second larges...    68   1e-15  3
(BZ472152) BONBM12TF BO_1.6_2_KB_tot Brassica oleracea genom...    68   1e-15  2
(DQ017121) Nepenthes maxima RNA polymerase II second largest...    50   1e-15  5
(BH710398) BOMKZ70TR BO_2_3_KB Brassica oleracea genomic clo...    68   2e-15  2
(AY218513) Henningsomyces candidus strain Thorn 156 RNA poly...    84   2e-15  4
(AY485611) Baeomyces sp. SLJ472 DNA-dependent RNA polymerase...    78   3e-15  3
(AM478907) Vitis vinifera contig VV78X015564.9, whole genome...    88   4e-15  4
(EA681515) Sequence 60394 from patent US 7365185.                  46   5e-15  5
(AY497599) Pichia membranifaciens strain CBS 107 RNA polymer...    88   7e-15  3
(Z19121) A.thaliana gene for RNA polymerase II second larges...    68   7e-15  3
(AY497603) Pichia fermentans strain CBS 1876 RNA polymerase ...    68   7e-15  3
(AF107785) Agaricus bisporus DNA-dependent RNA polymerase II...    64   9e-15  4
(DQ017093) Chimonanthus praecox RNA polymerase II second lar...    64   1e-14  3
(AC196839) Sorghum bicolor clone SB_BBc0077C24, WORKING DRAF...    58   2e-14  9
(DQ973089) Ophioparma lapponica isolate AFTOL-ID 1707 RNA po...    94   2e-14  1
(EF599472) Pichia membranifaciens isolate 638b2 DNA-dependen...    88   3e-14  2
(CK572209) est_l_vannamei2574 WdCthem9h Litopenaeus vannamei...    54   5e-14  5
(AC196826) Sorghum bicolor clone SB_BBc0047A17, WORKING DRAF...    58   1e-13  8
(EF599478) Pichia sydowiorum isolate 6152b2 DNA-dependent RN...    86   1e-13  2
(DQ058634) Nymphaea colorata RNA polymerase II second larges...    74   2e-13  4
(EF599479) Pichia anomala isolate 605b2 DNA-dependent RNA po...    60   3e-13  3
(FH958929) CHO_OF6769xb16r1.ab1 CHO_OF6 Nicotiana tabacum ge...    90   4e-13  1
(FH741842) CHO_OF5160xe04r1.ab1 CHO_OF5 Nicotiana tabacum ge...    90   4e-13  1
(FH201056) CHO_OF3080xa19r1.ab1 CHO_OF3 Nicotiana tabacum ge...    90   4e-13  1
(FH042087) CHO_OF3013xc17f1.ab1 CHO_OF3 Nicotiana tabacum ge...    90   4e-13  1
(D13337) Schizosaccharomyces pombe rpb2 gene for RNA polymer...    50   5e-13  3
(U55020) Saccharomyces cerevisiae cosmid pEOA477 from chromo...    56   5e-13  5
(DQ883760) Gyalideopsis vulgaris isolate AFTOL-ID 105 RNA po...    68   1e-12  2
(DQ017133) Vitis piasezkii RNA polymerase II second largest ...    88   2e-12  1
(AY497601) Candida glabrata strain CBS 138 RNA polymerase II...    80   2e-12  2
(DQ017097) Coriaria sarmentosa RNA polymerase II second larg...    58   3e-12  4
(AL035527) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    68   3e-12  5
(DQ408114) Phallus hadriani isolate AFTOL-ID 683 RNA polymer...    80   5e-12  3
(AF107806) Microglossum viride DNA-dependent RNA polymerase ...    84   5e-12  2
(DQ017113) Hibbertia scandens RNA polymerase II second large...    72   7e-12  3
(DQ302792) Synchytrium macrosporum isolate AFTOL-ID 635 RNA ...    78   2e-11  2
(DQ847520) Wallemia muriae isolate AFTOL-ID 1090 RNA polymer...    84   2e-11  1
(DQ020633) Berberidopsis corallina RNA polymerase II second ...    58   3e-11  6
(AY497609) Lachancea kluyveri strain CBS 3082 RNA polymerase...    74   3e-11  2
(DQ058630) Eschscholzia californica RNA polymerase II second...    74   4e-11  2
(AY333314) Phaeomarasmius proximans isolate AFTOL-ID 979 RNA...    68   6e-11  2
(EF014406) Coelomomyces stegomyiae RNA polymerase II second ...    72   7e-11  2
(AL161555) Arabidopsis thaliana DNA chromosome 4, contig fra...    68   8e-11  6
(DQ385886) Macrolepiota dolichaula isolate AFTOL-ID 481 RNA ...    42   9e-11  5
(DQ017101) Dillenia suffruticosa RNA polymerase II second la...    54   9e-11  3
(EF599450) Candida shehatae isolate WM 809 DNA-dependent RNA...    82   9e-11  1
(CG964236) MBEKV47TR mth2 Medicago truncatula genomic clone ...    72   1e-10  2
(EF599448) Candida saitoana isolate WM 52 DNA-dependent RNA ...    78   1e-10  2
(DQ472722) Hydropus marginellus isolate AFTOL-ID 1720 RNA po...    78   1e-10  2

>(BJ397090) Dictyostelium discoideum cDNA clone:dds45c04, 5' end,
            single read.
          Length = 617

 Score = 1223 bits (617), Expect = 0.0
 Identities = 617/617 (100%)
 Strand = Plus / Plus


Query: 455  attgatggtgtatcacaacaagttacaccaaatcaagcaagaattagaaatttaacctat 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    attgatggtgtatcacaacaagttacaccaaatcaagcaagaattagaaatttaacctat 60


Query: 515  tcagcaccattatttgtggatattacgaaaacggtgatgacaggatcaaagagtaaaggt 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tcagcaccattatttgtggatattacgaaaacggtgatgacaggatcaaagagtaaaggt 120


Query: 575  gatgaaagaagaaccgatgaggtattaaagagaattttcattggtaaagtaccaattatg 634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  gatgaaagaagaaccgatgaggtattaaagagaattttcattggtaaagtaccaattatg 180


Query: 635  ttacgttcacaatattgtatgttgaatgaagcagatgatagagatttaacaacgatggga 694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  ttacgttcacaatattgtatgttgaatgaagcagatgatagagatttaacaacgatggga 240


Query: 695  gaatgttcattcgatcaaggcggttatttcatcattaatggtagtgaaaaggtattgatt 754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gaatgttcattcgatcaaggcggttatttcatcattaatggtagtgaaaaggtattgatt 300


Query: 755  gcacaagagaagatgaacaacaatcatgtttacgtatttaagaaatcaccaccatcaaaa 814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gcacaagagaagatgaacaacaatcatgtttacgtatttaagaaatcaccaccatcaaaa 360


Query: 815  tattcatatgttgcagagattcgttcttgtcaagagacaggttcaagaccaacctcaaca 874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tattcatatgttgcagagattcgttcttgtcaagagacaggttcaagaccaacctcaaca 420


Query: 875  atgtatttgaaaatgttacacaataccaacaagggtccagtgggtatcaaagccactgta 934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atgtatttgaaaatgttacacaataccaacaagggtccagtgggtatcaaagccactgta 480


Query: 935  ccctacattaaacaagatgtacccgttatcattgtctttagagcattgggttttgttgcc 994
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ccctacattaaacaagatgtacccgttatcattgtctttagagcattgggttttgttgcc 540


Query: 995  gataaagatattttagaacatatttgttatgacttcaaggatgcccaaatgatggatctt 1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  gataaagatattttagaacatatttgttatgacttcaaggatgcccaaatgatggatctt 600


Query: 1055 atgagaccatcactcga 1071
            |||||||||||||||||
Sbjct: 601  atgagaccatcactcga 617

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,011,432,856
Number of extensions: 114929355
Number of successful extensions: 8947012
Number of sequences better than 10.0: 1424
Length of query: 2012
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1988
Effective length of database: 97,308,875,965
Effective search space: 193450045418420
Effective search space used: 193450045418420
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

Query= Contig-U12609-1 (Contig-U12609-1Q) /CSM_Contig/Contig-U12609-1Q.Seq.d
         (2012 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54J75) RecName: Full=DNA-directed RNA polymerase II subunit rp...  1205   0.0
DQ058627_1(DQ058627|pid:none) Rhododendron macrophyllum RNA poly...   810   0.0
DQ020642_1(DQ020642|pid:none) Antirrhinum majus RNA polymerase I...   808   0.0
DQ020641_1(DQ020641|pid:none) Petunia x hybrida RNA polymerase I...   806   0.0
DQ058628_1(DQ058628|pid:none) Rhododendron macrophyllum RNA poly...   805   0.0
Z19121_1(Z19121|pid:none) A.thaliana gene for RNA polymerase II ...   801   0.0
Z19120_1(Z19120|pid:none) A.thaliana mRNA for RNA polymerase II ...   801   0.0
DQ020638_1(DQ020638|pid:none) Petunia x hybrida RNA polymerase I...   796   0.0
DQ020637_1(DQ020637|pid:none) Antirrhinum majus RNA polymerase I...   792   0.0
DQ020636_1(DQ020636|pid:none) Nicotiana sylvestris RNA polymeras...   790   0.0
CP000581_176(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...   768   0.0
CP001324_413(CP001324|pid:none) Micromonas sp. RCC299 chromosome...   745   0.0
BC038472_1(BC038472|pid:none) Mus musculus polymerase (RNA) II (...   732   0.0
(P30876) RecName: Full=DNA-directed RNA polymerase II subunit RP...   732   0.0
BC142267_1(BC142267|pid:none) Bos taurus polymerase (RNA) II (DN...   732   0.0
BC060458_1(BC060458|pid:none) Xenopus laevis hypothetical protei...   731   0.0
DQ056143_29(DQ056143|pid:none) Coprinellus disseminatus strain C...   726   0.0
BT059230_1(BT059230|pid:none) Salmo salar clone ssal-rgf-535-090...   721   0.0
(Q10578) RecName: Full=DNA-directed RNA polymerase II subunit RP...   719   0.0
AL163481_6(AL163481|pid:none) S.pombe chromosome I cosmid c521.       716   0.0
D13337_1(D13337|pid:none) Schizosaccharomyces pombe rpb2 gene fo...   716   0.0
FN357318_14(FN357318|pid:none) Schistosoma mansoni genome sequen...   707   0.0
DQ017133_1(DQ017133|pid:none) Vitis piasezkii RNA polymerase II ...   706   0.0
DQ020634_1(DQ020634|pid:none) Berberidopsis beckleri RNA polymer...   706   0.0
DQ017113_1(DQ017113|pid:none) Hibbertia scandens RNA polymerase ...   706   0.0
DQ017100_1(DQ017100|pid:none) Dicentra formosa RNA polymerase II...   704   0.0
DQ017087_1(DQ017087|pid:none) Aextoxicon punctatum RNA polymeras...   703   0.0
DQ017132_1(DQ017132|pid:none) Tetracentron sinense RNA polymeras...   702   0.0
DQ017120_1(DQ017120|pid:none) Nelumbo nucifera RNA polymerase II...   702   0.0
DQ017101_1(DQ017101|pid:none) Dillenia suffruticosa RNA polymera...   701   0.0
DQ058630_1(DQ058630|pid:none) Eschscholzia californica RNA polym...   700   0.0
DQ017092_1(DQ017092|pid:none) Callistemon subulatus RNA polymera...   698   0.0
DQ017103_1(DQ017103|pid:none) Embothrium coccineum RNA polymeras...   698   0.0
DQ020640_1(DQ020640|pid:none) Nicotiana sylvestris RNA polymeras...   696   0.0
DQ017096_1(DQ017096|pid:none) Cissus tuberosa RNA polymerase II ...   691   0.0
DQ017121_1(DQ017121|pid:none) Nepenthes maxima RNA polymerase II...   685   0.0
(A5DHT2) RecName: Full=DNA-directed RNA polymerase II subunit RP...   685   0.0
AY485613_1(AY485613|pid:none) Pichia guilliermondii DNA-dependen...   685   0.0
DQ020633_1(DQ020633|pid:none) Berberidopsis corallina RNA polyme...   673   0.0
DQ058632_1(DQ058632|pid:none) Platanus orientalis RNA polymerase...   672   0.0
AF107787_1(AF107787|pid:none) Candida albicans DNA-dependent RNA...   663   0.0
(Q753Q4) RecName: Full=DNA-directed RNA polymerase II subunit RP...   662   0.0
DQ058635_1(DQ058635|pid:none) Spinacia oleracea RNA polymerase I...   662   0.0
X05709_1(X05709|pid:none) Drosophila DmRP140 gene for RNA polyme...   662   0.0
AK294901_1(AK294901|pid:none) Homo sapiens cDNA FLJ61678 complet...   660   0.0
CU928176_503(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   659   0.0
CU928171_114(CU928171|pid:none) Kluyveromyces thermotolerans str...   659   0.0
(Q6FLD5) RecName: Full=DNA-directed RNA polymerase II subunit RP...   657   0.0
DQ020659_1(DQ020659|pid:none) Chlamydomonas reinhardtii RNA poly...   654   0.0
AK299090_1(AK299090|pid:none) Homo sapiens cDNA FLJ59391 complet...   634   e-180
AM920436_1268(AM920436|pid:none) Penicillium chrysogenum Wiscons...   633   e-180
AY485620_1(AY485620|pid:none) Filobasidiella neoformans DNA-depe...   629   e-178
(Q8SR75) RecName: Full=DNA-directed RNA polymerase II subunit RP...   624   e-177
DQ017108_1(DQ017108|pid:none) Gunnera chilensis RNA polymerase I...   619   e-175
CR954201_170(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   614   e-174
DQ499798_1(DQ499798|pid:none) Phaeosphaeria sp. S-93-48 RNA poly...   613   e-174
DQ058633_1(DQ058633|pid:none) Liquidambar acalycina RNA polymera...   613   e-174
DQ499810_1(DQ499810|pid:none) Phaeosphaeria avenaria f. sp. aven...   612   e-173
DQ499813_1(DQ499813|pid:none) Phaeosphaeria avenaria f. sp. aven...   612   e-173
DQ278491_1(DQ278491|pid:none) Phaeosphaeria nodorum second large...   611   e-173
DQ499800_1(DQ499800|pid:none) Phaeosphaeria avenaria f. sp. trit...   607   e-172
CU633454_208(CU633454|pid:none) Podospora anserina genomic DNA c...   597   e-169
BX284752_32(BX284752|pid:none) Neurospora crassa DNA linkage gro...   597   e-169
FJ914623_1(FJ914623|pid:none) Epichloe festucae strain E2368 DNA...   593   e-168
DQ058634_1(DQ058634|pid:none) Nymphaea colorata RNA polymerase I...   587   e-166
AE001362_148(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...   573   e-162
S70415(S70415) DNA-directed RNA polymerase (EC 2.7.7.6) II secon...   570   e-161
AM910986_43(AM910986|pid:none) Plasmodium knowlesi strain H chro...   565   e-159
CR940353_306(CR940353|pid:none) Theileria annulata strain Ankara...   565   e-159
DQ058625_1(DQ058625|pid:none) Camellia japonica RNA polymerase I...   556   e-156
AE017344_345(AE017344|pid:none) Cryptococcus neoformans var. neo...   551   e-155
AY485609_1(AY485609|pid:none) Amanita phalloides DNA-dependent R...   545   e-153
AF107785_1(AF107785|pid:none) Agaricus bisporus DNA-dependent RN...   543   e-153
AY786066_1(AY786066|pid:none) Suillus pictus RNA polymerase II s...   534   e-150
AY218477_1(AY218477|pid:none) Chondrostereum purpureum isolate A...   532   e-149
AY485631_1(AY485631|pid:none) Pneumocystis carinii DNA-dependent...   531   e-149
DQ408121_1(DQ408121|pid:none) Pycnoporus sp. ZW02.30 RNA polymer...   528   e-148
AF107786_1(AF107786|pid:none) Neolecta vitellina DNA-dependent R...   527   e-148
U10335_1(U10335|pid:none) Crassostrea gigas RNA polymerase II se...   526   e-147
U10337_1(U10337|pid:none) Helobdella stagnalis RNA polymerase II...   525   e-147
AY786065_1(AY786065|pid:none) Strobilomyces floccopus RNA polyme...   523   e-147
DQ408120_1(DQ408120|pid:none) Polyporus squamosus isolate AFTOL-...   523   e-147
DQ408123_1(DQ408123|pid:none) Spongipellis pachyodon isolate AFT...   520   e-146
DQ408118_1(DQ408118|pid:none) Laetiporus sulphureus isolate AFTO...   520   e-145
DQ408116_1(DQ408116|pid:none) Ganoderma tsugae isolate AFTOL-ID ...   518   e-145
AY780941_1(AY780941|pid:none) Climacodon septentrionalis isolate...   518   e-145
DQ385886_1(DQ385886|pid:none) Macrolepiota dolichaula isolate AF...   517   e-145
T43701(T43701) DNA-directed RNA polymerase (EC 2.7.7.6) II large...   514   e-144
DQ408124_1(DQ408124|pid:none) Steccherinum laeticolor RNA polyme...   513   e-144
DQ381844_1(DQ381844|pid:none) Vuilleminia comedens RNA polymeras...   512   e-143
AY495590_1(AY495590|pid:none) Botryotinia fuckeliana RNA polymer...   510   e-143
AY218495_1(AY218495|pid:none) Lycoperdon sp. DSH 96-054 isolate ...   510   e-143
AY485615_1(AY485615|pid:none) Candida tropicalis DNA-dependent R...   510   e-143
DQ408117_1(DQ408117|pid:none) Irpex lacteus RNA polymerase II se...   507   e-142
DQ408125_1(DQ408125|pid:none) Trametes versicolor isolate AFTOL-...   507   e-142
AF107807_1(AF107807|pid:none) Leotia viscosa DNA-dependent RNA p...   506   e-142
AY218526_1(AY218526|pid:none) Coltricia perennis isolate AFTOL-I...   506   e-142
AY218513_1(AY218513|pid:none) Henningsomyces candidus strain Tho...   503   e-141
AY485614_1(AY485614|pid:none) Candida parapsilosis DNA-dependent...   503   e-140
AY218520_1(AY218520|pid:none) Stereum hirsutum isolate AFTOL-ID ...   500   e-140
AY544206_1(AY544206|pid:none) Heterobasidion annosum isolate AFT...   499   e-139
DQ408111_1(DQ408111|pid:none) Nia vibrissa RNA polymerase II sec...   496   e-138
EF494067_1(EF494067|pid:none) Phymatotrichopsis omnivora strain ...   496   e-138
AY786059_1(AY786059|pid:none) Hygrophoropsis aurantiaca RNA poly...   494   e-138
AF107793_1(AF107793|pid:none) Emericella nidulans DNA-dependent ...   493   e-137
AF107808_1(AF107808|pid:none) Sclerotinia sclerotiorum DNA-depen...   493   e-137
AY485612_1(AY485612|pid:none) Candida glabrata DNA-dependent RNA...   491   e-137
AY485622_1(AY485622|pid:none) Dibaeis baeomyces DNA-dependent RN...   490   e-137
AF107794_1(AF107794|pid:none) Byssochlamys nivea DNA-dependent R...   489   e-136
AY485610_1(AY485610|pid:none) Aspergillus fumigatus DNA-dependen...   488   e-136
AY803748_1(AY803748|pid:none) Fomitiporia mediterranea isolate A...   486   e-135
AY485634_1(AY485634|pid:none) Thamnolia vermicularis DNA-depende...   486   e-135
AY218480_1(AY218480|pid:none) Dacrymyces chrysospermus strain FP...   483   e-135
AY218506_1(AY218506|pid:none) Polyporus arcularius isolate AFTOL...   481   e-134
DQ385882_1(DQ385882|pid:none) Cylindrobasidium evolvens strain K...   479   e-133
AY780196_1(AY780196|pid:none) Strattonia carbonaria strain ATCC ...   476   e-132
AF107800_1(AF107800|pid:none) Dothidea insculpta DNA-dependent R...   476   e-132
DQ366283_1(DQ366283|pid:none) Serpula himantioides isolate AFTOL...   475   e-132
AF165818_28(AF165818|pid:none) Guillardia theta nucleomorph chro...   473   e-131
AY600277_1(AY600277|pid:none) Lasiosphaeria glabrata voucher TL4...   470   e-130
AY780189_1(AY780189|pid:none) Podospora fimbriata strain CBS 144...   469   e-130
AF107789_1(AF107789|pid:none) Neurospora crassa DNA-dependent RN...   468   e-130
AF107805_1(AF107805|pid:none) Sporormiella minima DNA-dependent ...   468   e-130
AY780164_1(AY780164|pid:none) Cercophora macrocarpa strain SMH20...   467   e-130
AY780173_1(AY780173|pid:none) Zignoella ovoidea strain SMH2605 R...   467   e-130
AY780195_1(AY780195|pid:none) Sordaria macrospora strain Buck s....   467   e-130
AF107803_1(AF107803|pid:none) Curvularia brachyspora DNA-depende...   467   e-130
AY600278_1(AY600278|pid:none) Lasiosphaeria glabrata voucher SMH...   466   e-129
AY485619_1(AY485619|pid:none) Cryphonectria parasitica DNA-depen...   466   e-129
AY485611_1(AY485611|pid:none) Baeomyces sp. SLJ472 DNA-dependent...   466   e-129
AY780185_1(AY780185|pid:none) Neurospora pannonica strain TRTC51...   466   e-129
AY600294_1(AY600294|pid:none) Lasiosphaeria rugulosa voucher SMH...   466   e-129
AY600284_1(AY600284|pid:none) Lasiosphaeria ovina voucher SMH460...   466   e-129
AY600283_1(AY600283|pid:none) Lasiosphaeria lanuginosa voucher S...   465   e-129
AY485625_1(AY485625|pid:none) Melanomma radicans DNA-dependent R...   464   e-129
AY780153_1(AY780153|pid:none) Bombardia bombarda strain SMH3391 ...   464   e-129
AY600279_1(AY600279|pid:none) Lasiosphaeria lanuginosa voucher S...   464   e-129
AY485627_1(AY485627|pid:none) Neofusicoccum mangiferae DNA-depen...   464   e-129
AF107801_1(AF107801|pid:none) Mycosphaerella citrullina DNA-depe...   464   e-129
AF107792_1(AF107792|pid:none) Microascus trigonosporus DNA-depen...   463   e-129
AY600295_1(AY600295|pid:none) Lasiosphaeria sorbina voucher GJS ...   462   e-128
AY600289_1(AY600289|pid:none) Lasiosphaeria ovina voucher SMH412...   462   e-128
AF107790_1(AF107790|pid:none) Podospora anserina DNA-dependent R...   462   e-128
AY600281_1(AY600281|pid:none) Lasiosphaeria lanuginosa voucher S...   462   e-128
AY600280_1(AY600280|pid:none) Lasiosphaeria lanuginosa voucher S...   461   e-128
AY600296_1(AY600296|pid:none) Lasiosphaeria sorbina voucher CBS8...   461   e-128
AY780183_1(AY780183|pid:none) Linocarpon appendiculatum strain A...   460   e-128
AF107802_1(AF107802|pid:none) Botryosphaeria rhodina DNA-depende...   460   e-127
AY780199_1(AY780199|pid:none) Valsonectria pulchella strain SMH1...   457   e-127
AY485628_1(AY485628|pid:none) Opegrapha varia DNA-dependent RNA ...   456   e-126
AY780186_1(AY780186|pid:none) Podospora appendiculata strain CBS...   455   e-126
AY780168_1(AY780168|pid:none) Cercophora scortea strain GJS L556...   455   e-126
AY780159_1(AY780159|pid:none) Cercophora sp. SMH3200 RNA polymer...   454   e-126
AY780166_1(AY780166|pid:none) Cercophora newfieldiana strain SMH...   452   e-125
AY218486_1(AY218486|pid:none) Gautieria otthii isolate AFTOL-ID ...   449   e-124
EF494071_1(EF494071|pid:none) Psilopezia deligata strain KH99.13...   443   e-122
AY485626_1(AY485626|pid:none) Mycosphaerella punctiformis DNA-de...   441   e-122
AY600275_1(AY600275|pid:none) Cercophora areolata voucher UAMH74...   434   e-120
EU284018_1(EU284018|pid:none) Agaricus sp. JB-101 strain RWK 178...   413   e-113
DQ408130_1(DQ408130|pid:none) Scytinostroma alutum RNA polymeras...   397   e-109
BC095078_1(BC095078|pid:none) Danio rerio polymerase (RNA) II (D...   394   e-108
CT005268_16(CT005268|pid:none) Leishmania major strain Friedlin,...   384   e-105
AM502249_16(AM502249|pid:none) Leishmania infantum chromosome 31.     382   e-104
AF107796_1(AF107796|pid:none) Exophiala jeanselmei DNA-dependent...   380   e-104
AF107798_1(AF107798|pid:none) Capronia pilosella DNA-dependent R...   377   e-103
AF107797_1(AF107797|pid:none) Capronia mansonii DNA-dependent RN...   377   e-102
AY485638_1(AY485638|pid:none) Aureobasidium pullulans DNA-depend...   374   e-102
AY485618_1(AY485618|pid:none) Coccodinium bartschii DNA-dependen...   369   e-100
DQ408126_1(DQ408126|pid:none) Gloeocystidiellum porosum RNA poly...   356   2e-96
DQ017099_1(DQ017099|pid:none) Dianthus caryophyllus RNA polymera...   342   4e-92
CP001398_1927(CP001398|pid:none) Thermococcus gammatolerans EJ3,...   338   6e-91
AE009950_1564(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c...   335   4e-90
CP000855_219(CP000855|pid:none) Thermococcus onnurineus NA1, com...   332   4e-89
AP006878_1084(AP006878|pid:none) Thermococcus kodakarensis KOD1 ...   330   1e-88
DQ158857_96(DQ158857|pid:none) Bigelowiella natans nucleomorph c...   328   6e-88
CP000505_286(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...   327   1e-87
A71032(A71032) probable DNA-directed RNA polymerase subunit B - ...   327   1e-87
DQ234550_1(DQ234550|pid:none) Colacogloea peniophorae isolate AF...   327   1e-87
CP001403_1949(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14...   325   5e-87
CP001399_1861(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...   325   5e-87
FJ515667_1(FJ515667|pid:none) Sulfolobus shibatae B12 RNA polyme...   324   7e-87
DQ832222_1(DQ832222|pid:none) Sphacelotheca cf. koordersiana JAG...   322   3e-86
CP000816_649(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...   322   4e-86
DQ831037_1(DQ831037|pid:none) Mrakia frigida AFTOL-ID 1818 RNA p...   322   4e-86
DQ302787_1(DQ302787|pid:none) Umbelopsis ramanniana isolate AFTO...   321   6e-86
DQ631901_1(DQ631901|pid:none) Bannoa sp. MP3490 RNA polymerase I...   320   2e-85
AY786057_1(AY786057|pid:none) Grifola frondosa RNA polymerase II...   319   3e-85
DQ234555_1(DQ234555|pid:none) Rhodotorula hordea isolate AFTOL-I...   319   3e-85
DQ472726_1(DQ472726|pid:none) Camarophyllopsis hymenocephala iso...   319   3e-85
DQ302784_1(DQ302784|pid:none) Mortierella verticillata isolate A...   318   4e-85
AJ890364_438(AJ890364|pid:none) Emiliania huxleyi virus 86 isola...   318   6e-85
DQ474122_1(DQ474122|pid:none) Mycena aurantiidisca isolate AFTOL...   317   1e-84
CP000682_33(CP000682|pid:none) Metallosphaera sedula DSM 5348, c...   316   2e-84
DQ302793_1(DQ302793|pid:none) Rhizophydium macroporosum isolate ...   316   2e-84
DQ472716_1(DQ472716|pid:none) Gymnopus contrarius isolate AFTOL-...   316   2e-84
AY780937_1(AY780937|pid:none) Ampulloclitocybe clavipes isolate ...   316   2e-84
DQ789985_1(DQ789985|pid:none) Microbotryum violaceum isolate AFT...   316   2e-84
DQ302766_1(DQ302766|pid:none) Coelomomyces stegomyiae isolate AF...   315   4e-84
DQ408114_1(DQ408114|pid:none) Phallus hadriani isolate AFTOL-ID ...   315   5e-84
DQ408112_1(DQ408112|pid:none) Tricholomopsis decora isolate AFTO...   314   9e-84
DQ484054_1(DQ484054|pid:none) Stropharia ambigua isolate AFTOL-I...   314   9e-84
DQ408128_1(DQ408128|pid:none) Lactarius lignyotus isolate AFTOL-...   313   2e-83
DQ521418_1(DQ521418|pid:none) Tulasnella violea isolate AFTOL-ID...   313   2e-83
S04716(S04716) DNA-directed RNA polymerase (EC 2.7.7.6) chain B ...   312   3e-83
DQ474126_1(DQ474126|pid:none) Plicaturopsis crispa isolate AFTOL...   312   3e-83
DQ408135_1(DQ408135|pid:none) Trechispora alnicola isolate AFTOL...   312   3e-83
DQ835999_1(DQ835999|pid:none) Tomentella sp. AFTOL-ID 1016 RNA p...   311   6e-83
DQ474120_1(DQ474120|pid:none) Mycena aff. pura PBM 2665 isolate ...   311   7e-83
FJ436321_1(FJ436321|pid:none) Hebeloma affine voucher NI270904 T...   311   7e-83
DQ472711_1(DQ472711|pid:none) Cyathus striatus isolate AFTOL-ID ...   311   7e-83
DQ366285_1(DQ366285|pid:none) Cantharellus cibarius isolate AFTO...   311   7e-83
DQ234552_1(DQ234552|pid:none) Tilletiopsis sp. CBS 111593 isolat...   310   1e-82
DQ366282_1(DQ366282|pid:none) Coniophora arida isolate AFTOL-ID ...   310   2e-82
DQ472717_1(DQ472717|pid:none) Gymnopus dryophilus isolate AFTOL-...   309   2e-82
DQ408110_1(DQ408110|pid:none) Mythicomyces corneipes isolate AFT...   309   2e-82
DQ836008_1(DQ836008|pid:none) Udeniomyces puniceus isolate AFTOL...   309   3e-82
AY641027_1(AY641027|pid:none) Athelia bombacina DNA-dependent RN...   308   5e-82
DQ911602_1(DQ911602|pid:none) Leucoagaricus barssii isolate AFTO...   308   5e-82
DQ474128_1(DQ474128|pid:none) Rhodocybe mundula isolate AFTOL-ID...   308   6e-82
DQ847521_1(DQ847521|pid:none) Wallemia sebi isolate AFTOL-ID 191...   308   6e-82
FJ536638_1(FJ536638|pid:none) Gyroporus cyanescens voucher MB 05...   308   6e-82
DQ835995_1(DQ835995|pid:none) Tilletiopsis washingtonensis isola...   308   6e-82
DQ472721_1(DQ472721|pid:none) Hydnopolyporus fimbriatus isolate ...   308   6e-82
EF421018_1(EF421018|pid:none) Rhodocybe fallax strain CBS129.63 ...   308   6e-82
FJ536627_1(FJ536627|pid:none) Calostoma fuscum voucher OKM 23918...   307   8e-82
DQ472730_1(DQ472730|pid:none) Kuehneromyces rostratus isolate AF...   307   8e-82
DQ381838_1(DQ381838|pid:none) Sistotrema coronilla RNA polymeras...   307   8e-82
DQ470832_1(DQ470832|pid:none) Chrysomphalina grossula isolate AF...   307   8e-82
FJ536647_1(FJ536647|pid:none) Phlebopus sp. REH8795 RNA polymera...   307   8e-82
FJ536652_1(FJ536652|pid:none) Scleroderma areolatum voucher PBM2...   307   1e-81
DQ474127_1(DQ474127|pid:none) Pseudoarmillariella ectypoides iso...   307   1e-81
DQ645530_1(DQ645530|pid:none) Entyloma arnoseridis isolate AFTOL...   307   1e-81
FJ536659_1(FJ536659|pid:none) Scleroderma sinnamariense voucher ...   307   1e-81
DQ381843_1(DQ381843|pid:none) Punctularia strigosozonata RNA pol...   307   1e-81
FJ536640_1(FJ536640|pid:none) Gyroporus sp. AWW-2009a RNA polyme...   307   1e-81
FJ536657_1(FJ536657|pid:none) Scleroderma macalpinei voucher OSC...   307   1e-81
DQ470827_1(DQ470827|pid:none) Baeospora myosura isolate AFTOL-ID...   307   1e-81
FJ536624_1(FJ536624|pid:none) Astraeus hygrometricus voucher Ash...   307   1e-81
FJ536623_1(FJ536623|pid:none) Astraeus hygrometricus voucher MB ...   307   1e-81
AY641083_1(AY641083|pid:none) Taphrina communis DNA-dependent RN...   306   1e-81
(P22276) RecName: Full=DNA-directed RNA polymerase III subunit R...   306   1e-81
DQ859892_1(DQ859892|pid:none) Sarcomyxa serotina isolate AFTOL-I...   306   2e-81
EF420996_1(EF420996|pid:none) Hypsizygus ulmarius strain DUKE-JM...   306   2e-81
CR380958_114(CR380958|pid:none) Candida glabrata strain CBS138 c...   306   2e-81
EF421008_1(EF421008|pid:none) Tephrocybe rancida strain CBS204.4...   306   2e-81
DQ408139_1(DQ408139|pid:none) Insolibasidium deformans isolate A...   306   2e-81
M38723_2(M38723|pid:none) Saccharomyces cerevisiae tyrosine phos...   306   2e-81
DQ302780_1(DQ302780|pid:none) Scutellospora heterogama isolate A...   305   3e-81
EU307850_1(EU307850|pid:none) Inocybe fibrillosibrunnea voucher ...   305   3e-81
EF420990_1(EF420990|pid:none) Lyophyllum favrei strain IE-BSG-HC...   305   3e-81
FJ536630_1(FJ536630|pid:none) Calostoma ravenelii voucher 510 RN...   305   3e-81
DQ472718_1(DQ472718|pid:none) Hebeloma velutipes isolate AFTOL-I...   305   3e-81
EF420989_1(EF420989|pid:none) Calocybe fallax strain IE-BSG-HC80...   305   3e-81
EU555465_1(EU555465|pid:none) Inocybe cf. renispora PBM 2195 RNA...   305   3e-81
DQ367434_1(DQ367434|pid:none) Lyophyllum leucophaeatum strain HA...   305   3e-81
EF421000_1(EF421000|pid:none) Lyophyllum caerulescens strain IE-...   305   4e-81
EF420997_1(EF420997|pid:none) Lyophyllum ambustum strain CBS452....   305   4e-81
EF420995_1(EF420995|pid:none) Lyophyllum connatum strain DUKE-JM...   305   4e-81
EF421015_1(EF421015|pid:none) Tricholoma subaureum strain KMS590...   305   4e-81
FJ536641_1(FJ536641|pid:none) Gyroporus purpurinus voucher Leaco...   305   4e-81
DQ367436_1(DQ367436|pid:none) Tricholoma myomyces strain KMS589 ...   305   4e-81
DQ367433_1(DQ367433|pid:none) Lyophyllum decastes strain JM87/16...   305   4e-81
EU600899_1(EU600899|pid:none) Inocybe sp. MCA 2441 RNA polymeras...   305   4e-81
EU600836_1(EU600836|pid:none) Inocybe sp. PBM 2197 RNA polymeras...   305   4e-81
DQ385885_1(DQ385885|pid:none) Lepista irina isolate AFTOL-ID 815...   305   4e-81
DQ381841_1(DQ381841|pid:none) Tulasnella violea RNA polymerase I...   305   4e-81
EU600876_1(EU600876|pid:none) Inocybe sp. ADP060305 RNA polymera...   305   4e-81
FJ536656_1(FJ536656|pid:none) Scleroderma meridionale voucher AW...   305   5e-81
FJ536642_1(FJ536642|pid:none) Gyroporus sp. REH8799 RNA polymera...   305   5e-81
DQ470831_1(DQ470831|pid:none) Cheimonophyllum candidissimum isol...   305   5e-81
EF420988_1(EF420988|pid:none) Asterophora parasitica strain CBS6...   304   7e-81
EU600886_1(EU600886|pid:none) Inocybe sp. BB6018 RNA polymerase ...   304   7e-81
AY333314_1(AY333314|pid:none) Phaeomarasmius proximans isolate A...   304   7e-81
EF421007_1(EF421007|pid:none) Tephrocybe palustris strain CBS717...   304   7e-81
EF420992_1(EF420992|pid:none) Calocybe obscurissima strain IE-BS...   304   9e-81
AY536283_1(AY536283|pid:none) Cylindrobasidium laeve isolate AFT...   304   9e-81
DQ472719_1(DQ472719|pid:none) Hemimycena gracilis isolate AFTOL-...   304   9e-81
DQ385876_1(DQ385876|pid:none) Agrocybe praecox isolate AFTOL-ID ...   304   9e-81
FJ536661_1(FJ536661|pid:none) Scleroderma sp. AWW311 RNA polymer...   303   1e-80
FN392322_236(FN392322|pid:none) Pichia pastoris GS115 chromosome...   303   1e-80
FJ536644_1(FJ536644|pid:none) Gyroporus subalbellus voucher OKM2...   303   1e-80
EF421016_1(EF421016|pid:none) Entoloma sericeonitidum strain TB7...   303   1e-80
EF421014_1(EF421014|pid:none) Tricholoma portentosum strain KMS5...   303   1e-80
EF421017_1(EF421017|pid:none) Nolanea strictior strain DUKE-JM96...   303   1e-80
EF421013_1(EF421013|pid:none) Porpoloma sp. DUKE-PR3995 RNA poly...   303   1e-80
DQ912401_1(DQ912401|pid:none) Lopezaria versicolor isolate AFTOL...   303   1e-80
FJ536637_1(FJ536637|pid:none) Gyroporus castanaeus voucher REH88...   303   1e-80
FJ536654_1(FJ536654|pid:none) Scleroderma bermudense voucher BZ3...   303   1e-80
DQ472720_1(DQ472720|pid:none) Hygrophorus auratocephalus isolate...   303   1e-80
EF421011_1(EF421011|pid:none) Clitocybe nebularis strain CBS362....   303   2e-80
AE016817_126(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...   303   2e-80
EF421020_1(EF421020|pid:none) Trichopilus porphyrophaeus strain ...   303   2e-80
AY497621_1(AY497621|pid:none) Clavispora lusitaniae strain CBS 6...   303   2e-80
U00050_9(U00050|pid:none) Caenorhabditis elegans cosmid F09F7, c...   303   2e-80
T16011(T16011)hypothetical protein F09F7.3 - Caenorhabditis eleg...   303   2e-80
DQ484053_1(DQ484053|pid:none) Simocybe serrulata isolate AFTOL-I...   302   3e-80
CU928168_404(CU928168|pid:none) Kluyveromyces thermotolerans str...   302   3e-80
DQ911608_1(DQ911608|pid:none) Jahnoporus hirtus isolate AFTOL-ID...   302   3e-80
DQ367435_1(DQ367435|pid:none) Nolanea sericea strain VHAs03/02 R...   302   3e-80
DQ663690_1(DQ663690|pid:none) Entyloma calendulae isolate AFTOL-...   301   5e-80
EF420999_1(EF420999|pid:none) Lyophyllum atratum strain CBS709.8...   301   6e-80
DQ846891_1(DQ846891|pid:none) Ustanciosporium standleyanum isola...   301   6e-80
EF420993_1(EF420993|pid:none) Calocybe persicolor strain IE-BSG-...   301   8e-80
BX537447_1(BX537447|pid:none) Homo sapiens mRNA; cDNA DKFZp686D1...   301   8e-80
DQ645517_1(DQ645517|pid:none) Cryptococcus humicola isolate AFTO...   301   8e-80
CP000493_1513(CP000493|pid:none) Hyperthermus butylicus DSM 5456...   301   8e-80
AY787221_1(AY787221|pid:none) Hyphoderma praetermissum isolate A...   301   8e-80
AY641075_1(AY641075|pid:none) Sphaerophorus globosus DNA-depende...   300   1e-79
DQ367431_1(DQ367431|pid:none) Asterophora agaricoides strain CBS...   300   1e-79
DQ912387_1(DQ912387|pid:none) Parmotrema reticulatum isolate AFT...   300   1e-79
EU343942_1(EU343942|pid:none) Metschnikowia agaves strain WM 07....   300   2e-79
EU600873_1(EU600873|pid:none) Inocybe sp. PBM 2157 RNA polymeras...   300   2e-79
DQ912396_1(DQ912396|pid:none) Degelia plumbea isolate AFTOL-ID 9...   299   2e-79
DQ912389_1(DQ912389|pid:none) Punctelia rudecta isolate AFTOL-ID...   299   2e-79
AY092084_1(AY092084|pid:none) Homo sapiens RNA polymerase III su...   299   2e-79
DQ366279_1(DQ366279|pid:none) Aureoboletus thibetanus isolate AF...   299   3e-79
DQ472713_1(DQ472713|pid:none) Fistulina antarctica isolate AFTOL...   299   3e-79
AY497596_1(AY497596|pid:none) Candida parapsilosis strain ATCC 9...   298   4e-79
AY641078_1(AY641078|pid:none) Stereocaulon paschale DNA-dependen...   298   4e-79
DQ847520_1(DQ847520|pid:none) Wallemia muriae isolate AFTOL-ID 1...   298   4e-79
DQ234554_1(DQ234554|pid:none) Platygloea disciformis isolate AFT...   298   4e-79
DQ912390_1(DQ912390|pid:none) Vulpicida pinastri isolate AFTOL-I...   298   5e-79
BC166377_1(BC166377|pid:none) Xenopus tropicalis hypothetical pr...   298   5e-79
DQ839597_1(DQ839597|pid:none) Urocystis colchici isolate AFTOL-I...   298   7e-79
FJ536662_1(FJ536662|pid:none) Tremellogaster surinamensis vouche...   298   7e-79
DQ883761_1(DQ883761|pid:none) Megalospora tuberculosa isolate AF...   297   9e-79
AY497598_1(AY497598|pid:none) Candida parapsilosis strain ATCC 9...   297   9e-79
DQ302765_1(DQ302765|pid:none) Allomyces arbuscula isolate AFTOL-...   297   9e-79
DQ912388_1(DQ912388|pid:none) Platismatia glauca isolate AFTOL-I...   297   1e-78
DQ912385_1(DQ912385|pid:none) Hypotrachyna degelii isolate AFTOL...   297   1e-78
DQ912382_1(DQ912382|pid:none) Cetraria islandica isolate AFTOL-I...   297   1e-78
FJ536631_1(FJ536631|pid:none) Calostoma rodwayi voucher GMM7572 ...   297   1e-78
DQ832328_1(DQ832328|pid:none) Lichinella iodopulchra isolate AFT...   296   1e-78
DQ058636_1(DQ058636|pid:none) Linanthus californicus RNA polymer...   296   2e-78
EF599450_1(EF599450|pid:none) Candida shehatae isolate WM 809 DN...   296   2e-78
AY497606_1(AY497606|pid:none) Debaryomyces etchellsii strain CBS...   296   2e-78
CR382126_43(CR382126|pid:none) Kluyveromyces lactis strain NRRL ...   295   4e-78
DQ832213_1(DQ832213|pid:none) Schizonella melanogramma AFTOL-ID ...   295   4e-78
EU016588_18(EU016588|pid:none) Uncultured Group I marine crenarc...   295   6e-78
CP001576_191(CP001576|pid:none) Micromonas sp. RCC299 chromosome...   295   6e-78
CR382139_993(CR382139|pid:none) Debaryomyces hansenii strain CBS...   295   6e-78
DQ825408_1(DQ825408|pid:none) Clitopilus sp. VHAs07/02 RNA polym...   294   7e-78
(P41558) RecName: Full=DNA-directed RNA polymerase subunit B''; ...   294   7e-78
DQ302782_1(DQ302782|pid:none) Smittium culisetae isolate AFTOL-I...   294   7e-78
AY497617_1(AY497617|pid:none) Candida parapsilosis strain CBS 60...   293   1e-77
AY584690_1(AY584690|pid:none) Trypethelium sp. DUKE 0000007 isol...   293   1e-77
DQ366278_1(DQ366278|pid:none) Auricularia sp. PBM2295 isolate AF...   293   1e-77
AY584685_1(AY584685|pid:none) Flavoparmelia caperata isolate AFT...   293   2e-77
DQ825406_1(DQ825406|pid:none) Callistosporium luteoolivaceum RNA...   293   2e-77
DQ302788_1(DQ302788|pid:none) Piptocephalis corymbifera isolate ...   293   2e-77
AY641032_1(AY641032|pid:none) Coenogonium leprieurii DNA-depende...   293   2e-77
DQ385880_1(DQ385880|pid:none) Clavulinopsis laeticolor isolate A...   292   3e-77
AY641048_1(AY641048|pid:none) Lasallia pennsylvanica DNA-depende...   292   4e-77
DQ408131_1(DQ408131|pid:none) Piriformospora indica isolate AFTO...   292   4e-77
AY497618_1(AY497618|pid:none) Metschnikowia pulcherrima strain C...   292   4e-77
AY641081_1(AY641081|pid:none) Strangospora pinicola DNA-dependen...   292   4e-77
AM292758_1(AM292758|pid:none) Biatora vernalis partial rpb2 gene...   291   5e-77
AY584686_1(AY584686|pid:none) Ostropa barbara isolate AFTOL-ID 7...   291   5e-77
CP000745_600(CP000745|pid:none) Methanococcus maripaludis C7, co...   291   5e-77
FJ536651_1(FJ536651|pid:none) Scleroderma areolatum voucher AWW2...   291   5e-77
AB368119_1(AB368119|pid:none) Amauroderma rugosum rpb2 gene for ...   291   5e-77
DQ472732_1(DQ472732|pid:none) Lachnella villosa isolate AFTOL-ID...   291   5e-77
CP000678_911(CP000678|pid:none) Methanobrevibacter smithii ATCC ...   291   5e-77
DQ825409_1(DQ825409|pid:none) Dendrocollybia racemosa RNA polyme...   291   6e-77
DQ825412_1(DQ825412|pid:none) Tricholomella constricta RNA polym...   291   6e-77
A99164(A99164) hypothetical protein rpoB2 [imported] - Sulfolobu...   291   6e-77
AY497602_1(AY497602|pid:none) Pichia jadinii strain CBS 1600 RNA...   291   8e-77
AY641069_1(AY641069|pid:none) Rhizocarpon disporum DNA-dependent...   291   8e-77
AY641043_1(AY641043|pid:none) Gyalecta jenensis DNA-dependent RN...   291   8e-77
DQ366280_1(DQ366280|pid:none) Boletellus shichianus isolate AFTO...   291   8e-77
DQ782868_1(DQ782868|pid:none) Pertusaria dactylina isolate AFTOL...   291   8e-77
CP000867_1299(CP000867|pid:none) Methanococcus maripaludis C6, c...   291   8e-77
AY641062_1(AY641062|pid:none) Placynthium nigrum DNA-dependent R...   290   1e-76
AY641052_1(AY641052|pid:none) Lobaria quercizans DNA-dependent R...   290   1e-76
AY497626_1(AY497626|pid:none) Candida tropicalis strain CBS 94 R...   290   1e-76
EF599446_1(EF599446|pid:none) Candida tropicalis isolate WM 30 D...   290   1e-76
DQ832231_1(DQ832231|pid:none) Sporisorium reilianum AFTOL-ID 490...   290   1e-76
(Q58444) RecName: Full=DNA-directed RNA polymerase subunit B''; ...   290   1e-76
DQ883757_1(DQ883757|pid:none) Anaptychia palmatula isolate AFTOL...   290   1e-76
AY780934_1(AY780934|pid:none) Coprinus comatus isolate AFTOL-ID ...   290   1e-76
DQ912393_1(DQ912393|pid:none) Physconia muscigena isolate AFTOL-...   290   1e-76
AY641055_1(AY641055|pid:none) Ochrolechia juvenalis DNA-dependen...   290   2e-76
DQ846896_1(DQ846896|pid:none) Ustilago tritici isolate AFTOL-ID ...   290   2e-76
DQ302773_1(DQ302773|pid:none) Spizellomyces punctatus isolate AF...   289   2e-76
DQ782864_1(DQ782864|pid:none) Anisomeridium polypori isolate AFT...   289   2e-76
DQ847519_1(DQ847519|pid:none) Wallemia ichthyophaga isolate AFTO...   289   2e-76
DQ234553_1(DQ234553|pid:none) Hydnum albomagnum isolate AFTOL-ID...   289   2e-76
DQ782867_1(DQ782867|pid:none) Mycoblastus sanguinarius isolate A...   289   2e-76
AB368173_1(AB368173|pid:none) Trametes gibbosa rpb2 gene for RNA...   289   2e-76
DQ973087_1(DQ973087|pid:none) Cetradonia sp. AFTOL 1657 RNA poly...   289   3e-76
DQ525436_1(DQ525436|pid:none) Acarospora fulvoviridula voucher S...   289   3e-76
AY121645_1(AY121645|pid:none) Drosophila melanogaster LD14594 fu...   289   3e-76
AY803750_1(AY803750|pid:none) Tilletiaria anomala isolate AFTOL-...   289   3e-76
DQ525456_1(DQ525456|pid:none) Pleopsidium chlorophanum voucher Z...   289   3e-76
DQ525443_1(DQ525443|pid:none) Pleopsidium chlorophanum voucher R...   289   3e-76
AB368131_1(AB368131|pid:none) Lenzites betulinus rpb2 gene for R...   289   3e-76
DQ525452_1(DQ525452|pid:none) Pleopsidium gobiense voucher Vost,...   289   3e-76
DQ883749_1(DQ883749|pid:none) Lobaria scrobiculata isolate AFTOL...   289   3e-76
EF599479_1(EF599479|pid:none) Pichia anomala isolate 605b2 DNA-d...   288   4e-76
DQ912392_1(DQ912392|pid:none) Phaeophyscia orbicularis isolate A...   288   4e-76
DQ381839_1(DQ381839|pid:none) Tulasnella pruinosa RNA polymerase...   288   4e-76
AY786056_1(AY786056|pid:none) Fomitopsis pinicola RNA polymerase...   288   4e-76
EU016631_11(EU016631|pid:none) Uncultured Group I marine crenarc...   288   4e-76
AY497612_1(AY497612|pid:none) Candida castellii strain CBS 4332 ...   288   5e-76
DQ525461_1(DQ525461|pid:none) Pleopsidium chlorophanum voucher H...   288   5e-76
DQ883750_1(DQ883750|pid:none) Pseudocyphellaria anomala isolate ...   288   5e-76
AB368124_1(AB368124|pid:none) Echinochaete ruficeps rpb2 gene fo...   288   7e-76
AY641041_1(AY641041|pid:none) Glypholecia scabra DNA-dependent R...   288   7e-76
AB368128_1(AB368128|pid:none) Lentinus sajor-caju rpb2 gene for ...   288   7e-76
AY641021_1(AY641021|pid:none) Acarospora cervina DNA-dependent R...   288   7e-76
AY497597_1(AY497597|pid:none) Candida parapsilosis strain ATCC 9...   288   7e-76
AB368129_1(AB368129|pid:none) Lentinus squarrosulus rpb2 gene fo...   288   7e-76
AB368130_1(AB368130|pid:none) Lentinus tigrinus rpb2 gene for RN...   288   7e-76
DQ302785_1(DQ302785|pid:none) Rhopalomyces elegans isolate AFTOL...   288   7e-76
AB368154_1(AB368154|pid:none) Polyporus squamosus rpb2 gene for ...   287   9e-76
DQ832331_1(DQ832331|pid:none) Peltula auriculata isolate AFTOL-I...   287   9e-76
DQ912391_1(DQ912391|pid:none) Buellia stillingiana isolate AFTOL...   287   9e-76
AB368150_1(AB368150|pid:none) Polyporus leprieurii rpb2 gene for...   287   9e-76
EF599485_1(EF599485|pid:none) Torulaspora delbrueckii isolate n1...   287   9e-76
AB368120_1(AB368120|pid:none) Daedaleopsis confragosa rpb2 gene ...   287   1e-75
AB368121_1(AB368121|pid:none) Datronia mollis rpb2 gene for RNA ...   287   1e-75
AY780940_1(AY780940|pid:none) Clavaria zollingeri isolate AFTOL-...   287   1e-75
AY641064_1(AY641064|pid:none) Pleopsidium chlorophanum DNA-depen...   286   2e-75
DQ973079_1(DQ973079|pid:none) Parmeliella appalachensis isolate ...   286   2e-75
DQ234551_1(DQ234551|pid:none) Endocronartium harknessii isolate ...   286   2e-75
AY497600_1(AY497600|pid:none) Saccharomyces cerevisiae strain CB...   286   2e-75
DQ973070_1(DQ973070|pid:none) Myelochroa aurulenta isolate AFTOL...   286   2e-75
AB368159_1(AB368159|pid:none) Polyporus tubiformis rpb2 gene for...   286   2e-75
DQ645509_1(DQ645509|pid:none) Cintractia limitata isolate AFTOL-...   286   2e-75
AB368172_1(AB368172|pid:none) Trametes conchifer rpb2 gene for R...   286   2e-75
AY641024_1(AY641024|pid:none) Acarospora laqueata DNA-dependent ...   286   2e-75
AB368165_1(AB368165|pid:none) Polyporus udus rpb2 gene for RNA p...   286   2e-75
AY641061_1(AY641061|pid:none) Petractis luetkemuelleri DNA-depen...   286   2e-75
EU343944_1(EU343944|pid:none) Pichia nakazawae var. nakazawae st...   286   2e-75
AB368158_1(AB368158|pid:none) Polyporus tubiformis rpb2 gene for...   286   2e-75
AY641020_1(AY641020|pid:none) Acarospora canadensis DNA-dependen...   286   2e-75
DQ525444_1(DQ525444|pid:none) Pleopsidium chlorophanum voucher R...   286   3e-75
DQ973074_1(DQ973074|pid:none) Rhizocarpon superficiale isolate A...   286   3e-75
CR954201_604(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   286   3e-75
AB368160_1(AB368160|pid:none) Polyporus tuberaster rpb2 gene for...   286   3e-75
AY584682_1(AY584682|pid:none) Acarosporina microspora isolate AF...   286   3e-75
DQ525445_1(DQ525445|pid:none) Pleopsidium chlorophanum voucher H...   286   3e-75
AB368155_1(AB368155|pid:none) Polyporus squamosus rpb2 gene for ...   286   3e-75
AB368151_1(AB368151|pid:none) Polyporus cf. pseudobetulinus WD18...   286   3e-75
DQ525464_1(DQ525464|pid:none) Pleopsidium flavum voucher Reeb VR...   286   3e-75
DQ408113_1(DQ408113|pid:none) Tubaria confragosa isolate AFTOL-I...   286   3e-75
AY641044_1(AY641044|pid:none) Gyalecta ulmi DNA-dependent RNA po...   286   3e-75
DQ314995_1(DQ314995|pid:none) Porpidia carlottiana isolate Porca...   286   3e-75
DQ973078_1(DQ973078|pid:none) Pannaria sp. AFTOL 309 RNA polymer...   286   3e-75
AB368122_1(AB368122|pid:none) Datronia scutellata rpb2 gene for ...   285   3e-75
DQ314996_1(DQ314996|pid:none) Porpidia flavocaerulescens isolate...   285   3e-75
DQ302791_1(DQ302791|pid:none) Rozella allomycis isolate AFTOL-ID...   285   3e-75
RNFF32(S16894) DNA-directed RNA polymerase (EC 2.7.7.6) III seco...   285   3e-75
DQ973093_1(DQ973093|pid:none) Menegazzia terebrata isolate AFTOL...   285   3e-75
AY641037_1(AY641037|pid:none) Dibaeis baeomyces DNA-dependent RN...   285   3e-75
DQ315021_1(DQ315021|pid:none) Porpidia flavocaerulescens isolate...   285   3e-75
FJ536625_1(FJ536625|pid:none) Astraeus asiaticus voucher Arora 0...   285   3e-75
AY337375_1(AY337375|pid:none) Inocybe flocculosa RNA polymerase ...   285   4e-75
DQ973090_1(DQ973090|pid:none) Asahinea scholanderi isolate AFTOL...   285   4e-75
AY641049_1(AY641049|pid:none) Lecanora concolor DNA-dependent RN...   285   4e-75
DQ973075_1(DQ973075|pid:none) Nephroma parile isolate AFTOL-ID 1...   285   4e-75
AY584687_1(AY584687|pid:none) Parmotrema tinctorum isolate AFTOL...   285   4e-75
DQ912386_1(DQ912386|pid:none) Parmotrema austrosinense isolate A...   285   4e-75
AY641019_1(AY641019|pid:none) Acarospora bullata DNA-dependent R...   285   6e-75
AY641023_1(AY641023|pid:none) Acarospora hilaris DNA-dependent R...   285   6e-75
AY497620_1(AY497620|pid:none) Kluyveromyces lactis strain CBS 68...   285   6e-75
AY641025_1(AY641025|pid:none) Acarospora macrospora subsp. macro...   285   6e-75
AY497599_1(AY497599|pid:none) Pichia membranifaciens strain CBS ...   285   6e-75
AY641076_1(AY641076|pid:none) Sporastatia polyspora DNA-dependen...   284   7e-75
AY641072_1(AY641072|pid:none) Sarcogyne similis DNA-dependent RN...   284   7e-75
AM292757_1(AM292757|pid:none) Biatora meiocarpa partial rpb2 gen...   284   7e-75
EU343876_1(EU343876|pid:none) Candida fragi strain CBS 7702 RNA ...   284   7e-75
DQ832335_1(DQ832335|pid:none) Peltula umbilicata isolate AFTOL-I...   284   7e-75
AY497595_1(AY497595|pid:none) Eremothecium gossypii strain ATCC ...   284   7e-75
AY333763_1(AY333763|pid:none) Inocybe calamistrata voucher JV 11...   284   1e-74
AB368156_1(AB368156|pid:none) Polyporus tenuiculus rpb2 gene for...   284   1e-74
AB368148_1(AB368148|pid:none) Polyporus grammocephalus rpb2 gene...   284   1e-74
AY641050_1(AY641050|pid:none) Lempholemma polyanthes DNA-depende...   283   1e-74
DQ408137_1(DQ408137|pid:none) Cryptococcus sp. CBS 681.93 RNA po...   283   1e-74
DQ315012_1(DQ315012|pid:none) Porpidia flavocaerulescens isolate...   283   1e-74
DQ883753_1(DQ883753|pid:none) Lobariella pallida isolate AFTOL-I...   283   1e-74
AY641087_1(AY641087|pid:none) Trichoglossum hirsutum DNA-depende...   283   1e-74
DQ973076_1(DQ973076|pid:none) Nephroma arcticum isolate AFTOL-ID...   283   1e-74
AY641033_1(AY641033|pid:none) Cudonia circinans DNA-dependent RN...   283   1e-74
AB368135_1(AB368135|pid:none) Polyporus alveolaris rpb2 gene for...   283   2e-74
DQ782866_1(DQ782866|pid:none) Roccella fuciformis isolate AFTOL-...   283   2e-74
DQ992478_1(DQ992478|pid:none) Stictis urceolatum RNA polymerase ...   283   2e-74
AB368136_1(AB368136|pid:none) Polyporus alveolaris rpb2 gene for...   283   2e-74
DQ883751_1(DQ883751|pid:none) Flavocetraria nivalis isolate AFTO...   283   2e-74
AY780154_1(AY780154|pid:none) Bombardia bombarda strain SMH4821 ...   283   2e-74
DQ883762_1(DQ883762|pid:none) Ramalina complanata isolate AFTOL-...   283   2e-74
AY497605_1(AY497605|pid:none) Pichia norvegensis strain CBS 1922...   283   2e-74
AY653538_1(AY653538|pid:none) Candida maltosa RNA polymerase sub...   283   2e-74
AY641070_1(AY641070|pid:none) Rhytisma acerinum DNA-dependent RN...   283   2e-74
EU343911_1(EU343911|pid:none) Candida incommunis strain WM 07.41...   283   2e-74
AY333311_1(AY333311|pid:none) Crepidotus cf. applanatus PBM 717 ...   283   2e-74
DQ831014_1(DQ831014|pid:none) Moesziomyces bullatus AFTOL-ID 182...   282   3e-74
EU343943_1(EU343943|pid:none) Pichia acaciae strain MUCL 31916 R...   282   3e-74
AM292781_1(AM292781|pid:none) Toninia cinereovirens partial rpb2...   282   3e-74
EF599448_1(EF599448|pid:none) Candida saitoana isolate WM 52 DNA...   282   3e-74

>(Q54J75) RecName: Full=DNA-directed RNA polymerase II subunit rpb2;
                   Short=RNA polymerase II subunit B2;
            Short=RNA polymerase II subunit 2;          EC=2.7.7.6;
          Length = 1170

 Score = 1205 bits (3117), Expect = 0.0
 Identities = 606/618 (98%), Positives = 606/618 (98%)
 Frame = +2

Query: 158  MSDYMMNDDSQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESP 337
            MSDYMMNDDSQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESP
Sbjct: 1    MSDYMMNDDSQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESP 60

Query: 338  PITLRPESQHHPGQAVVSNNVSTFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYS 517
            PITLRPESQHHPGQAVVSNNVSTFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYS
Sbjct: 61   PITLRPESQHHPGQAVVSNNVSTFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYS 120

Query: 518  APLFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGE 697
            APLFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGE
Sbjct: 121  APLFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGE 180

Query: 698  CSFDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTM 877
            CSFDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTM
Sbjct: 181  CSFDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTM 240

Query: 878  YLKMLHNTNKGPVGIKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLM 1057
            YLKMLHNTNKGPVGIKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLM
Sbjct: 241  YLKMLHNTNKGPVGIKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLM 300

Query: 1058 RPSLEESFVIQSQEVALDYLGKRGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKA 1237
            RPSLEESFVIQSQEVALDYLGKRGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKA
Sbjct: 301  RPSLEESFVIQSQEVALDYLGKRGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKA 360

Query: 1238 FYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRC 1417
            FYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRC
Sbjct: 361  FYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRC 420

Query: 1418 IDKDKEFIASSAVKSKTITSGLKYSLATGNWXXXXXXXXXXXVAQVLNRLTSASTLSHLR 1597
            IDKDKEFIASSAVKSKTITSGLKYSLATGNW           VAQVLNRLT ASTLSHLR
Sbjct: 421  IDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLR 480

Query: 1598 RLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILE 1777
            RLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILE
Sbjct: 481  RLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILE 540

Query: 1778 FLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSV 1957
            FLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSV
Sbjct: 541  FLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSV 600

Query: 1958 VRDIREKELRLYTDPGRC 2011
            VRDIREKELRLYTDPGRC
Sbjct: 601  VRDIREKELRLYTDPGRC 618

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,187,676,490
Number of extensions: 65816920
Number of successful extensions: 165918
Number of sequences better than 10.0: 3822
Number of HSP's gapped: 160487
Number of HSP's successfully gapped: 4104
Length of query: 670
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 535
Effective length of database: 614,245,399
Effective search space: 328621288465
Effective search space used: 328621288465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.75  gvh: 0.28  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for Contig-U12609-1 is nuc