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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12585-1
Contig ID Contig-U12585-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12585-1 (Contig-U12585-1Q) /CSM_Contig/Contig-U12585-1Q.Seq.d
GAAAATAATAATAAAATACCAAGTTTTGGATTAAAAAGTAATGTTAATTC
AACATATAATCATTTAGAAACTGTAGCAAAATTATCAATTGATGAAAAAC
TTGTAAATGAACCACCAAAGTTTGTTGATATTAAAACCATAACACCATTA
AATGTTGAGAATAATGGTATTGCACAAAAAAGAATTATAAGTAAAAGAGA
TTTAAGATCATTTCATACTTCATCAACCTATTCAGAACTATTAAACTTCA
TTATACAATTATCATTAGATATACAAGGAAAATCTTTAAAATCAAATTTT
ACCATTACAAAAAATATAAATTCAATAATTGTATTATTAAATCAACTTGA
TCAATATATAACAGATATACCACCAAAACAAATTAGAACTAGATTTGGAA
ATGAATCATTTGTAGAATGGTTTAATAAGGTAGAAAAAGAAACTCCAAAA
TTATTATTTAATTTAATAAATGATAATCCATTAAATACACCAATCACAAA
CGAAGTACCAATAATTTATAATGAAATTTCAACTTATTTACAA-------
---TTTTATTAGGCAATGTTGAAGAATTACATAAACATTTATTACCACAA
TCAATGCATTCATCAATTATTGAATTATCATCATATTTAATGGACGCAAT
GGGAAATCAAACTCGTTTAGATTATGGCACAGGCCATGAACTACATTTTG
TTGTTTGGACTTACTGTTTGAGAAGAATTGGTTTTTTAAAATCAACAGAT
GAGGAAGACATCGTATTGAATGTGTTCACTACATATTTGGATTTAGTTAG
AAAGTTACAAAGAGTTTATGGATTGGAACCAGCTGGGTCACATGGTGTTT
GGGGTTTGGATGATTATCATTTCTTACCATTCCTATTTGGTTCATCACAA
TTGATTGAACATAAATATATTAGACCGAAATCAATTAGAAATGATGAGAT
TGTAAATTCATCATTCTCTGATGAGTATATGTATTTAGGTTGTATTAGAT
TCATTGGAAAGGTGAAAAGTGGTGGAAGTCTATTAGAACATTCGCCAATG
TTGGTTGATATTAGTGGTGTTAAAAATTGGTCAAAAGTTAATGAAGGTAT
GATCAAAATGTTTAAATCTGAAGTACTTGGTAAATTACCAATTATGCAAC
ATATGTTTTTTGCTTCAATCATTCAATACATTGATAATCCCGATATCATA
GAAACTGATGAAGAAATTAATCAAAGAAAACCAATTGTAACTCATTCTTT
CTCTTCTTGTGGTTGTATAAATAGAGTACCTTCAATGTTTGCTGTTGCAA
ATACTGATAAAATTTTAGCTTCAACTTCAACCACCACTAATAATAATAAT
AATAACATAACTAGTGGTGATCATTGTAATGATAATGAACAACAATGTTC
TGAAACTCATAATCATGATCATAATCATAATCATAATCACAATCATAATC
ACCCACCACCACCACCACAACAACAAAGAT
Gap gap included
Contig length 1470
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 5
Number of EST 7
Link to clone list U12585
List of clone(s) 

est1=VSI605F,1,544
est2=VHM827F,545,1084
est3=VHM827Z,545,1004
est4=AFD334Z,708,1353
est5=AFH619Z,732,1369
est6=VSI605Z,827,1472
est7=AFK379Z,964,1252
Translated Amino Acid sequence 
ENNNKIPSFGLKSNVNSTYNHLETVAKLSIDEKLVNEPPKFVDIKTITPLNVENNGIAQK
RIISKRDLRSFHTSSTYSELLNFIIQLSLDIQGKSLKSNFTITKNINSIIVLLNQLDQYI
TDIPPKQIRTRFGNESFVEWFNKVEKETPKLLFNLINDNPLNTPITNEVPIIYNEISTYL
Q---

---LLGNVEELHKHLLPQSMHSSIIELSSYLMDAMGNQTRLDYGTGHELHFVVWTYCLRR
IGFLKSTDEEDIVLNVFTTYLDLVRKLQRVYGLEPAGSHGVWGLDDYHFLPFLFGSSQLI
EHKYIRPKSIRNDEIVNSSFSDEYMYLGCIRFIGKVKSGGSLLEHSPMLVDISGVKNWSK
VNEGMIKMFKSEVLGKLPIMQHMFFASIIQYIDNPDIIETDEEINQRKPIVTHSFSSCGC
INRVPSMFAVANTDKILASTSTTTNNNNNNITSGDHCNDNEQQCSETHNHDHNHNHNHNH
NHPPPPPQQQR
Translated Amino Acid sequence (All Frames) 
Frame A:
ENNNKIPSFGLKSNVNSTYNHLETVAKLSIDEKLVNEPPKFVDIKTITPLNVENNGIAQK
RIISKRDLRSFHTSSTYSELLNFIIQLSLDIQGKSLKSNFTITKNINSIIVLLNQLDQYI
TDIPPKQIRTRFGNESFVEWFNKVEKETPKLLFNLINDNPLNTPITNEVPIIYNEISTYL
Q---

---fy*amlknyiniyyhnqcihqllnyhhi*wtqweiklv*imaqamnyillfgltv*e
elvf*nqqmrktsy*mcslhiwi*lesykefmdwnqlghmvfgvwmiiisyhsylvhhn*
lninildrnqlemmrl*ihhslmsici*vvldsler*kvvevy*nirqcwlilvvlkigq
klmkv*skclnlkylvnyqlcnicfllqsfntliipis*klmkklikenql*lilsllvv
v*ieylqclllqilikf*lqlqppliiiiit*lvviivmimnnnvlkliimiiiiiiiti
iithhhhhnnkd

Frame B:
kiiikyqvld*kvmliqhiii*kl*qnyqlmknl*mnhqsllilkp*hh*mlrimvlhkk
el*vkei*dhfilhqpiqny*tslynyh*iykenl*nqilplqki*iq*lyy*inlini*
qiyhqnkleldlemnhl*nglir*kkklqnyyli**miih*ihqsqtkyq*fimkfqliy
---

---firqc*rit*tfittinafiny*iiiifngrngksnsfrlwhrp*ttfccldllfek
nwffkinr*grhriecvhyifgfs*kvtkslwigtswvtwclgfg*lsfltipiwfitid
*t*iy*tein*k**dckfiil**vyvfrly*ihwkgekwwksirtfanvg*y*wc*klvk
s**rydqnv*i*stw*itnyatyvfcfnhsih**sryhrn**rn*skktncnsfflflwl
yk*stfnvcccky**nfsfnfnhh******hn*w*sl****ttmf*ns*s*s*s*s*sqs
*sptttttttk

Frame C:
k***ntkfwikk*c*fni*sfrncskiin**ktck*ttkvc*y*nhntikc*e*wyctkk
nyk*krfkiisyfinlfrtiklhytiiirytrkifkikfyhykkykfnnciikst*siyn
ryttktn*n*iwk*iicrmv**grkrnskiii*fnk**sikytnhkrstnnl**nfnlft
---

---LLGNVEELHKHLLPQSMHSSIIELSSYLMDAMGNQTRLDYGTGHELHFVVWTYCLRR
IGFLKSTDEEDIVLNVFTTYLDLVRKLQRVYGLEPAGSHGVWGLDDYHFLPFLFGSSQLI
EHKYIRPKSIRNDEIVNSSFSDEYMYLGCIRFIGKVKSGGSLLEHSPMLVDISGVKNWSK
VNEGMIKMFKSEVLGKLPIMQHMFFASIIQYIDNPDIIETDEEINQRKPIVTHSFSSCGC
INRVPSMFAVANTDKILASTSTTTNNNNNNITSGDHCNDNEQQCSETHNHDHNHNHNHNH
NHPPPPPQQQR
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12585-1 (Contig-U12585-1Q)
/CSM_Contig/Contig-U12585-1Q.Seq.d
         (1480 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12585-1 (Contig-U12585-1Q) /CSM_Contig/Conti...  2591  0.0
Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U14374-1 (Contig-U14374-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U11390-1 (Contig-U11390-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U10536-1 (Contig-U10536-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U05280-1 (Contig-U05280-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U04966-1 (Contig-U04966-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U12571-1 (Contig-U12571-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U12031-1 (Contig-U12031-1Q) /CSM_Contig/Conti...    36  0.10

>Contig-U12585-1 (Contig-U12585-1Q) /CSM_Contig/Contig-U12585-1Q.Seq.d
          Length = 1480

 Score = 2591 bits (1307), Expect = 0.0
 Identities = 1337/1337 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    gaaaataataataaaataccaagttttggattaaaaagtaatgttaattcaacatataat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gaaaataataataaaataccaagttttggattaaaaagtaatgttaattcaacatataat 60

                                                                        
Query: 61   catttagaaactgtagcaaaattatcaattgatgaaaaacttgtaaatgaaccaccaaag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   catttagaaactgtagcaaaattatcaattgatgaaaaacttgtaaatgaaccaccaaag 120

                                                                        
Query: 121  tttgttgatattaaaaccataacaccattaaatgttgagaataatggtattgcacaaaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  tttgttgatattaaaaccataacaccattaaatgttgagaataatggtattgcacaaaaa 180

                                                                        
Query: 181  agaattataagtaaaagagatttaagatcatttcatacttcatcaacctattcagaacta 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  agaattataagtaaaagagatttaagatcatttcatacttcatcaacctattcagaacta 240

                                                                        
Query: 241  ttaaacttcattatacaattatcattagatatacaaggaaaatctttaaaatcaaatttt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ttaaacttcattatacaattatcattagatatacaaggaaaatctttaaaatcaaatttt 300

                                                                        
Query: 301  accattacaaaaaatataaattcaataattgtattattaaatcaacttgatcaatatata 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  accattacaaaaaatataaattcaataattgtattattaaatcaacttgatcaatatata 360

                                                                        
Query: 361  acagatataccaccaaaacaaattagaactagatttggaaatgaatcatttgtagaatgg 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  acagatataccaccaaaacaaattagaactagatttggaaatgaatcatttgtagaatgg 420

                                                                        
Query: 421  tttaataaggtagaaaaagaaactccaaaattattatttaatttaataaatgataatcca 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  tttaataaggtagaaaaagaaactccaaaattattatttaatttaataaatgataatcca 480

                                                                        
Query: 481  ttaaatacaccaatcacaaacgaagtaccaataatttataatgaaatttcaacttattta 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ttaaatacaccaatcacaaacgaagtaccaataatttataatgaaatttcaacttattta 540

                                                                        
Query: 541  caannnnnnnnnnttttattaggcaatgttgaagaattacataaacatttattaccacaa 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  caannnnnnnnnnttttattaggcaatgttgaagaattacataaacatttattaccacaa 600

                                                                        
Query: 601  tcaatgcattcatcaattattgaattatcatcatatttaatggacgcaatgggaaatcaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tcaatgcattcatcaattattgaattatcatcatatttaatggacgcaatgggaaatcaa 660

                                                                        
Query: 661  actcgtttagattatggcacaggccatgaactacattttgttgtttggacttactgtttg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  actcgtttagattatggcacaggccatgaactacattttgttgtttggacttactgtttg 720

                                                                        
Query: 721  agaagaattggttttttaaaatcaacagatgaggaagacatcgtattgaatgtgttcact 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  agaagaattggttttttaaaatcaacagatgaggaagacatcgtattgaatgtgttcact 780

                                                                        
Query: 781  acatatttggatttagttagaaagttacaaagagtttatggattggaaccagctgggtca 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  acatatttggatttagttagaaagttacaaagagtttatggattggaaccagctgggtca 840

                                                                        
Query: 841  catggtgtttggggtttggatgattatcatttcttaccattcctatttggttcatcacaa 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  catggtgtttggggtttggatgattatcatttcttaccattcctatttggttcatcacaa 900

                                                                        
Query: 901  ttgattgaacataaatatattagaccgaaatcaattagaaatgatgagattgtaaattca 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  ttgattgaacataaatatattagaccgaaatcaattagaaatgatgagattgtaaattca 960

                                                                        
Query: 961  tcattctctgatgagtatatgtatttaggttgtattagattcattggaaaggtgaaaagt 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tcattctctgatgagtatatgtatttaggttgtattagattcattggaaaggtgaaaagt 1020

                                                                        
Query: 1021 ggtggaagtctattagaacattcgccaatgttggttgatattagtggtgttaaaaattgg 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ggtggaagtctattagaacattcgccaatgttggttgatattagtggtgttaaaaattgg 1080

                                                                        
Query: 1081 tcaaaagttaatgaaggtatgatcaaaatgtttaaatctgaagtacttggtaaattacca 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tcaaaagttaatgaaggtatgatcaaaatgtttaaatctgaagtacttggtaaattacca 1140

                                                                        
Query: 1141 attatgcaacatatgttttttgcttcaatcattcaatacattgataatcccgatatcata 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 attatgcaacatatgttttttgcttcaatcattcaatacattgataatcccgatatcata 1200

                                                                        
Query: 1201 gaaactgatgaagaaattaatcaaagaaaaccaattgtaactcattctttctcttcttgt 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gaaactgatgaagaaattaatcaaagaaaaccaattgtaactcattctttctcttcttgt 1260

                                                                        
Query: 1261 ggttgtataaatagagtaccttcaatgtttgctgttgcaaatactgataaaattttagct 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ggttgtataaatagagtaccttcaatgtttgctgttgcaaatactgataaaattttagct 1320

                             
Query: 1321 tcaacttcaaccaccac 1337
            |||||||||||||||||
Sbjct: 1321 tcaacttcaaccaccac 1337


 Score =  105 bits (53), Expect = 1e-22
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1356 cataactagtggtgatcattgtaatgataatgaacaacaatgttctgaaactc 1408
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 cataactagtggtgatcattgtaatgataatgaacaacaatgttctgaaactc 1408


>Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Contig-U11869-1Q.Seq.d
          Length = 2237

 Score = 40.1 bits (20), Expect = 0.007
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 950 ttgtaaattcatcattctct 969
           ||||||||||||||||||||
Sbjct: 100 ttgtaaattcatcattctct 119


>Contig-U14374-1 (Contig-U14374-1Q) /CSM_Contig/Contig-U14374-1Q.Seq.d
          Length = 310

 Score = 38.2 bits (19), Expect = 0.027
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 447 aaaattattatttaattta 465
           |||||||||||||||||||
Sbjct: 223 aaaattattatttaattta 205


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,749
Number of Sequences: 6905
Number of extensions: 40749
Number of successful extensions: 4913
Number of sequences better than 10.0: 569
length of query: 1480
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1464
effective length of database: 5,564,391
effective search space: 8146268424
effective search space used: 8146268424
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12585-1 (Contig-U12585-1Q) /CSM_Contig/Contig-U12585-1Q.Seq.d
         (1480 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ343427) Dictyostelium discoideum cDNA clone:dda16e06, 3' ...  1021   0.0    2
(AU268952) Dictyostelium discoideum vegetative cDNA clone:VS...   525   0.0    3
(BJ341581) Dictyostelium discoideum cDNA clone:dda7d09, 3' e...  1021   0.0    1
(AU268951) Dictyostelium discoideum vegetative cDNA clone:VS...   551   0.0    2
(BJ425617) Dictyostelium discoideum cDNA clone:ddv56f08, 5' ...   587   e-163  1
(BJ345195) Dictyostelium discoideum cDNA clone:dda21n19, 3' ...   470   e-128  1
(BJ444414) Dictyostelium discoideum cDNA clone:ddv56f08, 3' ...   351   e-102  2
(DR918431) EST1109970 Aquilegia cDNA library Aquilegia formo...    94   3e-17  3
(DR946208) EST1137747 Aquilegia cDNA library Aquilegia formo...    94   3e-17  3
(DT736475) EST1170324 Aquilegia cDNA library Aquilegia formo...    94   3e-17  3
(DR941533) EST1133072 Aquilegia cDNA library Aquilegia formo...    94   3e-17  3
(DR935759) EST1127298 Aquilegia cDNA library Aquilegia formo...    94   3e-17  3
(DT736476) EST1170325 Aquilegia cDNA library Aquilegia formo...    94   4e-17  3
(EE651873) CHES1201.b1_A13.ab1 CHE(LMS) serpentine sunflower...    66   2e-14  3
(EX836761) CBNB6560.fwd CBNB Phycomyces blakesleeanus NRRL15...    94   2e-14  1
(EX836760) CBNB6560.rev CBNB Phycomyces blakesleeanus NRRL15...    94   2e-14  1
(DQ332036) Synthetic construct Saccharomyces cerevisiae clon...    62   7e-14  2
(AX831924) Sequence 2644 from Patent WO03072602.                   62   7e-14  2
(AX820894) Sequence 2644 from Patent EP1338608.                    62   7e-14  2
(AX596536) Sequence 2190 from Patent EP1258494.                    62   7e-14  2
(Z73508) S.cerevisiae chromosome XVI reading frame ORF YPL152w.    62   1e-13  2
(EE650959) CHES10736.b1_P20.ab1 CHE(LMS) serpentine sunflowe...    58   2e-12  3
(X96770) S.cerevisiae chromosome XVI, left arm DNA.                62   3e-12  4
(DB901337) Populus nigra mRNA, clone: PnFL2-049_B03, 3'end.        82   8e-12  2
(DJ025884) Genome-wide DNA marker of Saccharomyces cerevisiae.     62   5e-11  2
(CV283194) WS0186.B21_K22 PTxD-IL-N-A-9 Populus trichocarpa ...    76   7e-10  2
(DY275348) IC0AAA39AF08RM2 CitNFL Citrus clementina cDNA 5',...    76   1e-09  2
(DY290648) IC0AAA75DH06RM1 CitNFL Citrus clementina cDNA 5',...    76   1e-09  2
(DY273780) IC0AAA34DF03RM1 CitNFL Citrus clementina cDNA 5',...    76   1e-09  2
(DY300818) KN0AAQ11YF24RM1 CitNFL Citrus clementina cDNA 5',...    76   4e-09  1
(EY749676) CS00-C5-003-078-F08-CT.F Sweet orange flower, gre...    76   4e-09  1
(EY803937) CR05-C3-702-030-G12-CT.F Mandarin fruit, developm...    68   2e-07  2
(DY299352) IC0AAA98AE11RM1 CitNFL Citrus clementina cDNA 5',...    68   2e-07  2
(DY282568) IC0AAA57AD08RM1 CitNFL Citrus clementina cDNA 5',...    68   2e-07  2
(DY293301) IC0AAA82BG07RM1 CitNFL Citrus clementina cDNA 5',...    68   2e-07  2
(DY286631) IC0AAA65CD02RM1 CitNFL Citrus clementina cDNA 5',...    68   2e-07  2
(CR380959) Candida glabrata strain CBS138 chromosome M compl...    70   3e-07  1
(AP006864) Lotus japonicus genomic DNA, chromosome 3, clone:...    70   3e-07  1
(AM655682) Entamoeba moshkovskii FIC GSS, clone mosh030e03.q1k.    70   3e-07  1
(EC603489) Y48H03 YLX600 Hevea brasiliensis cDNA clone Y48H0...    70   3e-07  1
(DV556151) DC05031C01 Panax ginseng cDNA library Panax ginse...    54   5e-07  2
(DY292372) IC0AAA7DB08RM1 CitNFL Citrus clementina cDNA 5', ...    68   1e-06  1
(CV002218) pam01-21ms2-c03 Pam01 Persea americana cDNA clone...    58   5e-06  2
(DY276084) IC0AAA40AG03RM1 CitNFL Citrus clementina cDNA 5',...    62   1e-05  2
(CZ290454) cp70a07.f Candida parapsilosis Random Genomic Lib...    48   3e-05  2
(AM656868) Entamoeba moshkovskii FIC GSS, clone mosh048a10.q1k.    62   6e-05  1
(AM647838) Entamoeba moshkovskii FIC GSS, clone mosh053h06.q1k.    62   6e-05  1
(AM647837) Entamoeba moshkovskii FIC GSS, clone mosh053h06.p1k.    62   6e-05  1
(DW684614) EST008095 Trichophyton rubrum cDNA library 1 Tric...    62   6e-05  1
(DW684510) EST007991 Trichophyton rubrum cDNA library 1 Tric...    62   6e-05  1
(DW681762) EST005243 Trichophyton rubrum cDNA library 1 Tric...    62   6e-05  1
(DV448786) CV01025B2E06.f1 CV01-normalized library Manihot e...    62   6e-05  1
(BQ087585) Cri_9_B13_SP6 Ceratopteris Spore Library Ceratopt...    62   6e-05  1
(BE641991) Cri2_4_N07_SP6 Ceratopteris Spore Library Ceratop...    62   6e-05  1
(BE641212) Cri2_2_J18_SP6 Ceratopteris Spore Library Ceratop...    62   6e-05  1
(CZ291890) cp78c08.f Candida parapsilosis Random Genomic Lib...    60   3e-04  1
(AV415169) Lotus japonicus cDNA clone:MWM104c03_r, 5' end.         60   3e-04  1
(DY283208) IC0AAA58DD10RM1 CitNFL Citrus clementina cDNA 5',...    60   3e-04  1
(DY277174) IC0AAA43AF03RM1 CitNFL Citrus clementina cDNA 5',...    60   3e-04  1
(BQ149392) NF090A08FL1F1065 Developing flower Medicago trunc...    44   3e-04  2
(DV687050) CGN-28915 Leaf Coffea canephora cDNA clone cccl4m...    44   4e-04  2
(DV685796) CGN-27244 Leaf Coffea canephora cDNA clone cccl4m...    44   4e-04  2
(CA919803) EST637521 MTUS Medicago truncatula cDNA clone MTU...    44   4e-04  2
(BF003415) EST431913 KV1 Medicago truncatula cDNA clone pKV1...    44   5e-04  2
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1.     58   0.001  1
(DY295830) IC0AAA89BD05RM1 CitNFL Citrus clementina cDNA 5',...    58   0.001  1
(DW690903) EST014384 Trichophyton rubrum cDNA library 2 Tric...    58   0.001  1
(AJ270216) Entodinium caudatum partial mRNA for putative pho...    42   0.001  2
(CU224089) Populus EST from leave.                                 54   0.001  2
(DY266918) IC0AAA20AA09RM1 CitNFL Citrus clementina cDNA 5',...    54   0.003  2
(DJ210839) Method for identification of useful proteins deri...    56   0.004  1
(CJ995604) Saccharomyces pastorianus mRNA, clone: B094-78, 5...    56   0.004  1
(AQ501339) V23B1 mTn-3xHA/lacZ Insertion Library Saccharomyc...    54   0.016  1
(BZ003598) oeh85a06.g1 B.oleracea002 Brassica oleracea genom...    54   0.016  1
(BJ940105) Cryptomeria japonica pollen cDNA, clone:CP12186, ...    40   0.018  2
(EL906294) INIT2_11_F01.b1_A006 G5 trophont cDNA (INIT2) Ich...    46   0.024  2
(DY295714) IC0AAA89AB03RM1 CitNFL Citrus clementina cDNA 5',...    52   0.035  2
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.051  13
(CT030207) Zebrafish DNA sequence from clone CH211-176G6 in ...    42   0.057  6
(AE017348) Cryptococcus neoformans var. neoformans JEC21 chr...    52   0.061  1
(BI968633) GM830005B22G05 Gm-r1083 Glycine max cDNA clone Gm...    52   0.061  1
(CK319482) X9P11c06 Populus stem seasonal library Populus de...    48   0.064  2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    38   0.065  12
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.080  15
(EH780517) CNSS19354.b1_D15.ab1 CNS(LMS) yellow starthistle ...    40   0.083  2
(EH772097) CNSM4651.b1_E11.ab1 CNS(LMS) yellow starthistle C...    40   0.094  2
(CU468821) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.11   4
(AC201092) Strongylocentrotus purpuratus clone R3-13G19, WOR...    40   0.12   7
(AC202334) Medicago truncatula clone mth2-178b9, WORKING DRA...    44   0.14   5
(AC151551) Dasypus novemcinctus clone VMRC5-196F15, WORKING ...    34   0.14   2
(AC196628) Dasypus novemcinctus clone VMRC5-273B10, WORKING ...    34   0.14   2
(AC159581) Dasypus novemcinctus clone VMRC5-203B5, WORKING D...    34   0.15   2
(EU530686) Spiroplasma mirum DNA gyrase subunit B (gyrB) and...    36   0.18   2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.19   12
(AC178129) Strongylocentrotus purpuratus clone R3-1117C11, W...    40   0.20   9
(FC449799) CBAX5828.rev CBAX Physcomitrella patens subsp. pa...    48   0.22   2
(CR382135) Debaryomyces hansenii chromosome C of strain CBS7...    50   0.24   1
(AY087562) Arabidopsis thaliana clone 36687 mRNA, complete s...    50   0.24   1
(AY045611) Arabidopsis thaliana AT4g08960/T3H13_2 mRNA, comp...    50   0.24   1
(AY039989) Arabidopsis thaliana putative phosphotyrosyl phos...    50   0.24   1

>(BJ343427) Dictyostelium discoideum cDNA clone:dda16e06, 3' end,
            single read.
          Length = 638

 Score = 1021 bits (515), Expect(2) = 0.0
 Identities = 515/515 (100%)
 Strand = Plus / Minus


Query: 823  ttggaaccagctgggtcacatggtgtttggggtttggatgattatcatttcttaccattc 882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557  ttggaaccagctgggtcacatggtgtttggggtttggatgattatcatttcttaccattc 498


Query: 883  ctatttggttcatcacaattgattgaacataaatatattagaccgaaatcaattagaaat 942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497  ctatttggttcatcacaattgattgaacataaatatattagaccgaaatcaattagaaat 438


Query: 943  gatgagattgtaaattcatcattctctgatgagtatatgtatttaggttgtattagattc 1002
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437  gatgagattgtaaattcatcattctctgatgagtatatgtatttaggttgtattagattc 378


Query: 1003 attggaaaggtgaaaagtggtggaagtctattagaacattcgccaatgttggttgatatt 1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377  attggaaaggtgaaaagtggtggaagtctattagaacattcgccaatgttggttgatatt 318


Query: 1063 agtggtgttaaaaattggtcaaaagttaatgaaggtatgatcaaaatgtttaaatctgaa 1122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317  agtggtgttaaaaattggtcaaaagttaatgaaggtatgatcaaaatgtttaaatctgaa 258


Query: 1123 gtacttggtaaattaccaattatgcaacatatgttttttgcttcaatcattcaatacatt 1182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257  gtacttggtaaattaccaattatgcaacatatgttttttgcttcaatcattcaatacatt 198


Query: 1183 gataatcccgatatcatagaaactgatgaagaaattaatcaaagaaaaccaattgtaact 1242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197  gataatcccgatatcatagaaactgatgaagaaattaatcaaagaaaaccaattgtaact 138


Query: 1243 cattctttctcttcttgtggttgtataaatagagtaccttcaatgtttgctgttgcaaat 1302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137  cattctttctcttcttgtggttgtataaatagagtaccttcaatgtttgctgttgcaaat 78


Query: 1303 actgataaaattttagcttcaacttcaaccaccac 1337
            |||||||||||||||||||||||||||||||||||
Sbjct: 77   actgataaaattttagcttcaacttcaaccaccac 43

 Score = 48.1 bits (24), Expect(2) = 0.0
 Identities = 24/24 (100%)
 Strand = Plus / Minus


Query: 1356 cataactagtggtgatcattgtaa 1379
            ||||||||||||||||||||||||
Sbjct: 24   cataactagtggtgatcattgtaa 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,775,089,658
Number of extensions: 116178346
Number of successful extensions: 10202228
Number of sequences better than 10.0: 283
Length of query: 1480
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1456
Effective length of database: 97,308,875,965
Effective search space: 141681723405040
Effective search space used: 141681723405040
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12585-1 (Contig-U12585-1Q) /CSM_Contig/Contig-U12585-1Q.Seq.d
         (1480 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WH6) RecName: Full=Probable serine/threonine-protein phospha...   759   0.0
(Q55CJ3) RecName: Full=Probable serine/threonine-protein phospha...   321   4e-86
AF128396_11(AF128396|pid:none) Arabidopsis thaliana BAC T3H13.  ...   296   2e-78
AY087562_1(AY087562|pid:none) Arabidopsis thaliana clone 36687 m...   294   5e-78
AF360133_1(AF360133|pid:none) Arabidopsis thaliana putative phos...   293   8e-78
EF085064_1(EF085064|pid:none) Picea sitchensis clone WS0271_J03 ...   285   4e-75
AM488745_1(AM488745|pid:none) Vitis vinifera contig VV78X028377....   275   4e-72
(Q59ST6) RecName: Full=Serine/threonine-protein phosphatase 2A a...   257   7e-67
FM992690_360(FM992690|pid:none) Candida dubliniensis CD36 chromo...   253   2e-65
(Q9P7H4) RecName: Full=Serine/threonine-protein phosphatase 2A a...   249   1e-64
(Q6BU97) RecName: Full=Serine/threonine-protein phosphatase 2A a...   247   7e-64
(Q2KJ44) RecName: Full=Serine/threonine-protein phosphatase 2A r...   245   3e-63
AL158151_6(AL158151|pid:none) Human DNA sequence from clone RP11...   244   8e-63
AK222788_1(AK222788|pid:none) Homo sapiens mRNA for regulatory s...   244   8e-63
AY890844_1(AY890844|pid:none) Synthetic construct Homo sapiens c...   244   8e-63
(Q2UCL6) RecName: Full=Serine/threonine-protein phosphatase 2A a...   243   1e-62
(Q12461) RecName: Full=Serine/threonine-protein phosphatase 2A a...   242   3e-62
BC097741_1(BC097741|pid:none) Xenopus laevis hypothetical protei...   240   8e-62
AM270169_10(AM270169|pid:none) Aspergillus niger contig An08c014...   240   1e-61
CR925757_9(CR925757|pid:none) Zebrafish DNA sequence from clone ...   240   1e-61
AY035997_1(AY035997|pid:none) Mus musculus phosphotyrosyl phosph...   239   1e-61
BC166861_1(BC166861|pid:none) Rattus norvegicus protein phosphat...   239   1e-61
(Q6C712) RecName: Full=Serine/threonine-protein phosphatase 2A a...   238   3e-61
AL158151_5(AL158151|pid:none) Human DNA sequence from clone RP11...   237   7e-61
BC135674_1(BC135674|pid:none) Xenopus tropicalis hypothetical pr...   237   9e-61
(Q4PCR0) RecName: Full=Serine/threonine-protein phosphatase 2A a...   237   9e-61
(Q6CKF0) RecName: Full=Serine/threonine-protein phosphatase 2A a...   237   9e-61
BX649606_92(BX649606|pid:none) Aspergillus fumigatus BAC pilot p...   235   4e-60
CU928178_304(CU928178|pid:none) Zygosaccharomyces rouxii strain ...   234   8e-60
CU928168_463(CU928168|pid:none) Kluyveromyces thermotolerans str...   231   4e-59
CR382131_196(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   229   1e-58
AM920428_1195(AM920428|pid:none) Penicillium chrysogenum Wiscons...   227   1e-57
(Q4INW6) RecName: Full=Serine/threonine-protein phosphatase 2A a...   224   5e-57
AK342548_1(AK342548|pid:none) Acyrthosiphon pisum ACYPI005439 mR...   222   3e-56
X86428_2(X86428|pid:none) Homo sapiens PTPA gene for phosphotyro...   222   3e-56
(Q7SEF9) RecName: Full=Serine/threonine-protein phosphatase 2A a...   219   2e-55
AK302043_1(AK302043|pid:none) Homo sapiens cDNA FLJ54096 complet...   219   3e-55
CP001574_424(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   215   4e-54
X86428_3(X86428|pid:none) Homo sapiens PTPA gene for phosphotyro...   214   5e-54
BT077525_1(BT077525|pid:none) Lepeophtheirus salmonis Pacific fo...   214   6e-54
AC024859_17(AC024859|pid:none) Caenorhabditis elegans cosmid Y71...   205   4e-51
BT080221_1(BT080221|pid:none) Caligus clemensi clone ccle-evs-51...   205   4e-51
BT075861_1(BT075861|pid:none) Caligus rogercresseyi clone crog-e...   200   1e-49
AL954299_7(AL954299|pid:none) Mouse DNA sequence from clone RP23...   199   3e-49
AK297202_1(AK297202|pid:none) Homo sapiens cDNA FLJ60126 complet...   191   6e-47
AE014134_617(AE014134|pid:none) Drosophila melanogaster chromoso...   189   2e-46
AM910995_204(AM910995|pid:none) Plasmodium knowlesi strain H chr...   188   5e-46
(Q4WMU5) RecName: Full=Serine/threonine-protein phosphatase 2A a...   175   4e-42
(Q7S6M5) RecName: Full=Serine/threonine-protein phosphatase 2A a...   172   3e-41
(Q6FRQ9) RecName: Full=Serine/threonine-protein phosphatase 2A a...   172   3e-41
(Q6CYH1) RecName: Full=Serine/threonine-protein phosphatase 2A a...   169   2e-40
FN392320_1042(FN392320|pid:none) Pichia pastoris GS115 chromosom...   167   9e-40
CP000502_22(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso...   159   2e-37
CU928174_688(CU928174|pid:none) Zygosaccharomyces rouxii strain ...   159   2e-37
CR954202_149(CR954202|pid:none) Ostreococcus tauri strain OTTH05...   159   3e-37
AM494944_20(AM494944|pid:none) Leishmania braziliensis chromosom...   158   6e-37
AC099045_30(AC099045|pid:none) Trypanosoma brucei chromosome 8 c...   157   9e-37
FM992690_662(FM992690|pid:none) Candida dubliniensis CD36 chromo...   154   8e-36
CT005246_20(CT005246|pid:none) Leishmania major strain Friedlin,...   152   2e-35
AM502225_17(AM502225|pid:none) Leishmania infantum chromosome 7.      152   2e-35
(Q753L9) RecName: Full=Serine/threonine-protein phosphatase 2A a...   149   2e-34
AJ270216_1(AJ270216|pid:none) Entodinium caudatum partial mRNA f...   149   3e-34
(Q5K9U4) RecName: Full=Serine/threonine-protein phosphatase 2A a...   144   8e-33
CP000582_317(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...   143   1e-32
AL158151_9(AL158151|pid:none) Human DNA sequence from clone RP11...   135   5e-30
AL158151_10(AL158151|pid:none) Human DNA sequence from clone RP1...   128   5e-28
AL158151_16(AL158151|pid:none) Human DNA sequence from clone RP1...   123   2e-26
BT023722_1(BT023722|pid:none) Drosophila melanogaster AT10622 fu...   119   3e-25
AE014297_329(AE014297|pid:none) Drosophila melanogaster chromoso...   119   3e-25
(Q8SVB5) RecName: Full=Serine/threonine-protein phosphatase 2A a...   119   3e-25
AL158151_15(AL158151|pid:none) Human DNA sequence from clone RP1...    99   3e-19
AY812863_1(AY812863|pid:none) Schistosoma japonicum clone SJCHGC...    89   5e-16
AL158151_13(AL158151|pid:none) Human DNA sequence from clone RP1...    80   2e-13
AL158151_11(AL158151|pid:none) Human DNA sequence from clone RP1...    70   2e-10
AL158151_8(AL158151|pid:none) Human DNA sequence from clone RP11...    58   8e-07
AL158151_17(AL158151|pid:none) Human DNA sequence from clone RP1...    58   8e-07
AL954299_8(AL954299|pid:none) Mouse DNA sequence from clone RP23...    58   8e-07
EF041300_1(EF041300|pid:none) Drosophila pseudoobscura bogotana ...    44   0.015
EF041313_1(EF041313|pid:none) Drosophila pseudoobscura strain AF...    44   0.015
EF041301_1(EF041301|pid:none) Drosophila pseudoobscura bogotana ...    44   0.015
EF041302_1(EF041302|pid:none) Drosophila pseudoobscura bogotana ...    44   0.015
AL158151_14(AL158151|pid:none) Human DNA sequence from clone RP1...    44   0.020
EF041306_1(EF041306|pid:none) Drosophila persimilis strain Mathe...    44   0.020
AL158151_18(AL158151|pid:none) Human DNA sequence from clone RP1...    42   0.044
CP000312_1463(CP000312|pid:none) Clostridium perfringens SM101, ...    38   0.83
CP001185_899(CP001185|pid:none) Thermosipho africanus TCF52B, co...    37   1.9
FJ434456_23(FJ434456|pid:none) Bacillus subtilis strain 19 plasm...    37   1.9
Z50046_20(Z50046|pid:none) S.cerevisiae chromosome IV cosmid 8358.     37   2.4
(P89102) RecName: Full=Exocyst complex component SEC5;  &S50912(...    37   2.4
CP000733_1747(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...    36   3.2
AM465022_3(AM465022|pid:none) Vitis vinifera contig VV78X047040....    36   3.2
BA000023_285(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ...    36   3.2
CP001106_473(CP001106|pid:none) Eubacterium eligens ATCC 27750 p...    35   5.4
FN357535_21(FN357535|pid:none) Schistosoma mansoni genome sequen...    35   5.4
CR380949_229(CR380949|pid:none) Candida glabrata strain CBS138 c...    35   5.4
CP000411_1475(CP000411|pid:none) Oenococcus oeni PSU-1, complete...    35   7.0
CP001083_1413(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    35   9.2

>(Q54WH6) RecName: Full=Probable serine/threonine-protein phosphatase
            2A activator 2;          EC=5.2.1.8; AltName:
            Full=Peptidyl-prolyl cis-trans isomerase PTPA-2;
            Short=PPIase PTPA-2;          Short=Rotamase PTPA-2;
            AltName: Full=Phosphotyrosyl phosphatase activator 2;
          Length = 468

 Score =  759 bits (1959), Expect = 0.0
 Identities = 385/469 (82%), Positives = 403/469 (85%)
 Frame = +1

Query: 1    ENNNKIPSFGLKSNVNSTYNHLETVAKLSIDEKLVNEPPKFVDIKTITPLNVENNGIAQK 180
            ENNNKIPSFGLKSNVNSTYNHLETVAKLSIDEKLVNEPPKFVDIKTITPLNVENNGIAQK
Sbjct: 3    ENNNKIPSFGLKSNVNSTYNHLETVAKLSIDEKLVNEPPKFVDIKTITPLNVENNGIAQK 62

Query: 181  RIISKRDLRSFHTSSTYSELLNFIIQLSLDIQGKSLKSNFTITKNINSIIVLLNQLDQYI 360
            RIISKRDLRSFHTSSTYSELLNFIIQLSLDIQGKSLKSNFTITKNINSIIVLLNQLDQYI
Sbjct: 63   RIISKRDLRSFHTSSTYSELLNFIIQLSLDIQGKSLKSNFTITKNINSIIVLLNQLDQYI 122

Query: 361  TDIPPKQIRTRFGNESFVEWFNKVEKETPKLLFNLINDNPLNTPITNEVPIIYNEISTYL 540
            TDIPPKQIRTRFGNESFVEWFNKVEKETPKLLFNLINDNPLNTPITNEVPIIYNEISTY
Sbjct: 123  TDIPPKQIRTRFGNESFVEWFNKVEKETPKLLFNLINDNPLNTPITNEVPIIYNEISTY- 181

Query: 541  QXXXXLLGNVEELHKHLLPQSMHSSIIELSSYLMDAMGNQTRLDYGTGHELHFVVWTYCL 720
                                            L ++ G++ R+DYG+GHEL+F+ +  CL
Sbjct: 182  --------------------------------LQNSWGDKQRIDYGSGHELNFICFLLCL 209

Query: 721  RRIGFLKSTDEEDIVLNVFTTYLDLVRKLQRVYGLEPAGSHGVWGLDDYHFLPFLFGSSQ 900
             +I F+K  + E +VL +F  YL+++R+LQ  Y LEPAGSHGVWGLDDYHFLPFLFGSSQ
Sbjct: 210  VKIKFIKREEYELLVLIIFNKYLNMMRRLQESYWLEPAGSHGVWGLDDYHFLPFLFGSSQ 269

Query: 901  LIEHKYIRPKSIRNDEIVNSSFSDEYMYLGCIRFIGKVKSGGSLLEHSPMLVDISGVKNW 1080
            LIEHKYIRPKSIRNDEIVNSSFSDEYMYLGCIRFIGKVKSGGSLLEHSPMLVDISGVKNW
Sbjct: 270  LIEHKYIRPKSIRNDEIVNSSFSDEYMYLGCIRFIGKVKSGGSLLEHSPMLVDISGVKNW 329

Query: 1081 SKVNEGMIKMFKSEVLGKLPIMQHMFFASIIQYIDNPDIIETDEEINQRKPIVTHSFSSC 1260
            SKVNEGMIKMFKSEVLGKLPIMQHMFFASIIQYIDNPDIIETDEEINQRKPIVTHSFSSC
Sbjct: 330  SKVNEGMIKMFKSEVLGKLPIMQHMFFASIIQYIDNPDIIETDEEINQRKPIVTHSFSSC 389

Query: 1261 GCINRVPSMFAVANTDKILAXXXXXXXXXXXXXXXGDHCNDNEQQCSET 1407
            GCINRVPSMFAVANTDKILA               GDHCNDNEQQCSET
Sbjct: 390  GCINRVPSMFAVANTDKILASTSTTTNNNNNNITSGDHCNDNEQQCSET 438

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,137,569,816
Number of extensions: 42513732
Number of successful extensions: 132742
Number of sequences better than 10.0: 97
Number of HSP's gapped: 132563
Number of HSP's successfully gapped: 150
Length of query: 493
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 360
Effective length of database: 620,718,517
Effective search space: 223458666120
Effective search space used: 223458666120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.78  gvh: 0.33  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for Contig-U12585-1 is cyt
VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 3
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0