NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12581-1
Contig ID Contig-U12581-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Contig-U12581-1Q.Seq.d
AACAAATCAACATATCTTTGTAATAATTTTTAAACAATGTTTTCGTTTTT
AAAAGGAAAAAAAACAAAAGAATCATCAAATAACTTAAAAGAAGATAAAG
TCGAAGAAATTGAAGAGCAAGAAGAAGAAGAAGAAGAATATAGTATTATT
TTTAAAATTATAAAAAAAGTTAATAATAATAAACAACAACAAGAAATTAA
TGATAATAGTGAATTATTTTTTAAATTATTAAAAAATCAATATATAAAGA
ATGAAATATTTAAACAATGTAAACTTTATAAACAATATTCAAATGAAAAA
TATTTAGTACAAGATTATAAAGAATTTAGTGAAATTAAAGAAATCAATTG
TTATATTAAGGAATTAAATTTTAAAAAAGTTGATCCATTTTTAGGATTCA
ATGATTTAATAAATGAAATTAAAATTCCAAAAACCATTGAAATAATATCA
TTTGGTTTTGATAAACAATCATTTAAAGATATAAATCTTGGATTAATATT
ACCAAAATCAATATCAACACTAAAGATTGGTAAATATCCAAAACAAGTGA
TACTTGAACCAACCGATATACCAAAACATATTAAAAAATTAGTATTGGAA
GAAGGTTTTGAAAATCAAAGAACTTATTCAAAAACTAAATATGTTAGTAC
TATACCATTCATACCATCGACTGTGAAAACATTGGTTATCAATAGCACCT
ATTTCGGTACGAG----------TTTAATTGTCCACTTGAAGTTGGTAGT
TTCCCATCAACCTGTACTGAAATCCAATTTGGTAGTTCATTCAGCCAAGA
TATTAAACAAGGTCATTTACCAGATAATTTAATATCTTTGAATTTAGGCC
ACTATTTCAATAGAGATTTCATTCTACCATCAACATCAGCTACATTGAAA
ACCTTAATTTTGTCAATTAATTTTAATTTACCACTTAAAGTAGGTGACCT
TCCAACAAGTTTAGAACATTTAGAATTTGGTGATGAATTTAATAAACCAT
TAGCAAAGGGTGTGTTACCACCAAATCTAACTTTTTTAAAATTAAGTAAA
TACTTTGCTCAACAATTAAAAGCTGGTGATTTACCATCATCAATTAAAAC
ATTAATAATCTCAAGTGTAAAATTAAATGAATCAATGATAAAAGCAATTC
CTTCAAGTGTAACTTATTTAATACTATCCTATTTACCATCTACAATCAAT
AAATATACTTCACTATTACAACCAATCTCAACAACACTAAATCATTTAGA
ATACTTTTATTCTCAAGATGAAAATCCAATTGATTTCACTCAATTACCAA
ATGGTTTAAAAGTAACATATTCAAATAATAAATCACCAAAAACAATTATA
ATTAATAATTATTAGAAAATAAATAAATAAATAAATTTT
Gap gap included
Contig length 1379
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3321074
End point 3319704
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 8
Link to clone list U12581
List of clone(s) 

est1=VHQ131F,1,128
est2=VHQ131Z,1,110
est3=VSG401Z,84,201
est4=VSG401F,85,255
est5=VSH613F,162,673
est6=VSH592F,163,714
est7=VSH592Z,715,1381
est8=VSH613Z,958,1118
Translated Amino Acid sequence 
nkstylcnnf*TMFSFLKGKKTKESSNNLKEDKVEEIEEQEEEEEEYSIIFKIIKKVNNN
KQQQEINDNSELFFKLLKNQYIKNEIFKQCKLYKQYSNEKYLVQDYKEFSEIKEINCYIK
ELNFKKVDPFLGFNDLINEIKIPKTIEIISFGFDKQSFKDINLGLILPKSISTLKIGKYP
KQVILEPTDIPKHIKKLVLEEGFENQRTYSKTKYVSTIPFIPSTVKTLVINSTYFGT---

---FNCPLEVGSFPSTCTEIQFGSSFSQDIKQGHLPDNLISLNLGHYFNRDFILPSTSAT
LKTLILSINFNLPLKVGDLPTSLEHLEFGDEFNKPLAKGVLPPNLTFLKLSKYFAQQLKA
GDLPSSIKTLIISSVKLNESMIKAIPSSVTYLILSYLPSTINKYTSLLQPISTTLNHLEY
FYSQDENPIDFTQLPNGLKVTYSNNKSPKTIIINNY*kink*inf
Translated Amino Acid sequence (All Frames) 
Frame A:
nkstylcnnf*TMFSFLKGKKTKESSNNLKEDKVEEIEEQEEEEEEYSIIFKIIKKVNNN
KQQQEINDNSELFFKLLKNQYIKNEIFKQCKLYKQYSNEKYLVQDYKEFSEIKEINCYIK
ELNFKKVDPFLGFNDLINEIKIPKTIEIISFGFDKQSFKDINLGLILPKSISTLKIGKYP
KQVILEPTDIPKHIKKLVLEEGFENQRTYSKTKYVSTIPFIPSTVKTLVINSTYFGT---

---FNCPLEVGSFPSTCTEIQFGSSFSQDIKQGHLPDNLISLNLGHYFNRDFILPSTSAT
LKTLILSINFNLPLKVGDLPTSLEHLEFGDEFNKPLAKGVLPPNLTFLKLSKYFAQQLKA
GDLPSSIKTLIISSVKLNESMIKAIPSSVTYLILSYLPSTINKYTSLLQPISTTLNHLEY
FYSQDENPIDFTQLPNGLKVTYSNNKSPKTIIINNY*kink*inf

Frame B:
tnqhifviifkqcfrf*kekkqknhqit*kkikskklkskkkkkknivlflkl*kkliii
nnnkklmiivnyflny*kini*rmkylnnvnfinniqmkni*ykiiknlvklkksivilr
n*ilkklihf*dsmi**mklkfqkplk*yhlvlinnhlki*ild*yyqnqyqh*rlvniq
nk*ylnqpiyqnilkn*ywkkvlkikeliqklnmlvlyhsyhrl*khwlsiapisvr---

---livhlklvvshqpvlksnlvvhsakilnkviyqii*yl*i*atisieisfyhqhqlh
*kp*fcqliliyhlk*vtfqqv*ni*nlvmnlinh*qrvcyhqi*lf*n*vntllnn*kl
viyhhqlkh**sqv*n*mnq**kqflqv*li*yypiyhlqsinilhyynqsqqh*ii*nt
filkmkiqlislnyqmv*k*hiqiinhqkql*liiirk*ink*i

Frame C:
qinisl**flnnvfvfkrkknkriik*lkrr*srrn*rarrrrrri*yyf*nykks****
tttrn*****iif*iikksiyke*ni*tm*tl*tifk*kifstrl*ri**n*rnqlly*g
ikf*ks*sifriq*fnk*n*nsknh*nniiwf**tii*rykswinitkinintkdw*isk
tsdt*tnrytkty*kisigrrf*ksknlfkn*ic*yytihtidcenigyq*hlfrye---

---*lst*sw*fpinly*npiw*fiqpry*trsftr*fnifefrplfq*rfhstinisyi
enlnfvn*f*ftt*sr*psnkfrtfriw**i**tiskgcvttksnffkik*ilcstiksw
*ftiin*ninnlkckik*indksnsfkcnlfntilftiynq*iyftittnlnntksfril
lfsr*ksn*fhsitkwfksnifk**itknnyn**llenk*inkf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12581-1 (Contig-U12581-1Q)
/CSM_Contig/Contig-U12581-1Q.Seq.d
         (1389 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Conti...  2244  0.0
Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U08935-1 (Contig-U08935-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12509-1 (Contig-U12509-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11948-1 (Contig-U11948-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09539-1 (Contig-U09539-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U08927-1 (Contig-U08927-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U05008-1 (Contig-U05008-1Q) /CSM_Contig/Conti...    40  0.006

>Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Contig-U12581-1Q.Seq.d
          Length = 1389

 Score = 2244 bits (1132), Expect = 0.0
 Identities = 1176/1183 (99%)
 Strand = Plus / Plus

                                                                        
Query: 139  tatagtattatttttaaaattatnnnnnnngttaataataataaacaacaacaagaaatt 198
            |||||||||||||||||||||||       ||||||||||||||||||||||||||||||
Sbjct: 139  tatagtattatttttaaaattataaaaaaagttaataataataaacaacaacaagaaatt 198

                                                                        
Query: 199  aatgataatagtgaattattttttaaattattaaaaaatcaatatataaagaatgaaata 258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199  aatgataatagtgaattattttttaaattattaaaaaatcaatatataaagaatgaaata 258

                                                                        
Query: 259  tttaaacaatgtaaactttataaacaatattcaaatgaaaaatatttagtacaagattat 318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259  tttaaacaatgtaaactttataaacaatattcaaatgaaaaatatttagtacaagattat 318

                                                                        
Query: 319  aaagaatttagtgaaattaaagaaatcaattgttatattaaggaattaaattttaaaaaa 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319  aaagaatttagtgaaattaaagaaatcaattgttatattaaggaattaaattttaaaaaa 378

                                                                        
Query: 379  gttgatccatttttaggattcaatgatttaataaatgaaattaaaattccaaaaaccatt 438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379  gttgatccatttttaggattcaatgatttaataaatgaaattaaaattccaaaaaccatt 438

                                                                        
Query: 439  gaaataatatcatttggttttgataaacaatcatttaaagatataaatcttggattaata 498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439  gaaataatatcatttggttttgataaacaatcatttaaagatataaatcttggattaata 498

                                                                        
Query: 499  ttaccaaaatcaatatcaacactaaagattggtaaatatccaaaacaagtgatacttgaa 558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499  ttaccaaaatcaatatcaacactaaagattggtaaatatccaaaacaagtgatacttgaa 558

                                                                        
Query: 559  ccaaccgatataccaaaacatattaaaaaattagtattggaagaaggttttgaaaatcaa 618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559  ccaaccgatataccaaaacatattaaaaaattagtattggaagaaggttttgaaaatcaa 618

                                                                        
Query: 619  agaacttattcaaaaactaaatatgttagtactataccattcataccatcgactgtgaaa 678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619  agaacttattcaaaaactaaatatgttagtactataccattcataccatcgactgtgaaa 678

                                                                        
Query: 679  acattggttatcaatagcacctatttcggtacgagnnnnnnnnnntttaattgtccactt 738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  acattggttatcaatagcacctatttcggtacgagnnnnnnnnnntttaattgtccactt 738

                                                                        
Query: 739  gaagttggtagtttcccatcaacctgtactgaaatccaatttggtagttcattcagccaa 798
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739  gaagttggtagtttcccatcaacctgtactgaaatccaatttggtagttcattcagccaa 798

                                                                        
Query: 799  gatattaaacaaggtcatttaccagataatttaatatctttgaatttaggccactatttc 858
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  gatattaaacaaggtcatttaccagataatttaatatctttgaatttaggccactatttc 858

                                                                        
Query: 859  aatagagatttcattctaccatcaacatcagctacattgaaaaccttaattttgtcaatt 918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  aatagagatttcattctaccatcaacatcagctacattgaaaaccttaattttgtcaatt 918

                                                                        
Query: 919  aattttaatttaccacttaaagtaggtgaccttccaacaagtttagaacatttagaattt 978
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  aattttaatttaccacttaaagtaggtgaccttccaacaagtttagaacatttagaattt 978

                                                                        
Query: 979  ggtgatgaatttaataaaccattagcaaagggtgtgttaccaccaaatctaactttttta 1038
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  ggtgatgaatttaataaaccattagcaaagggtgtgttaccaccaaatctaactttttta 1038

                                                                        
Query: 1039 aaattaagtaaatactttgctcaacaattaaaagctggtgatttaccatcatcaattaaa 1098
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 aaattaagtaaatactttgctcaacaattaaaagctggtgatttaccatcatcaattaaa 1098

                                                                        
Query: 1099 acattaataatctcaagtgtaaaattaaatgaatcaatgataaaagcaattccttcaagt 1158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 acattaataatctcaagtgtaaaattaaatgaatcaatgataaaagcaattccttcaagt 1158

                                                                        
Query: 1159 gtaacttatttaatactatcctatttaccatctacaatcaataaatatacttcactatta 1218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 gtaacttatttaatactatcctatttaccatctacaatcaataaatatacttcactatta 1218

                                                                        
Query: 1219 caaccaatctcaacaacactaaatcatttagaatacttttattctcaagatgaaaatcca 1278
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 caaccaatctcaacaacactaaatcatttagaatacttttattctcaagatgaaaatcca 1278

                                                       
Query: 1279 attgatttcactcaattaccaaatggtttaaaagtaacatatt 1321
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 attgatttcactcaattaccaaatggtttaaaagtaacatatt 1321


 Score =  153 bits (77), Expect = 6e-37
 Identities = 93/101 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaatcaacatatctttgtaataatttttaaacaatgttttcgtttttaaaaggnnnn 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 1   aacaaatcaacatatctttgtaataatttttaaacaatgttttcgtttttaaaaggaaaa 60

                                                    
Query: 61  nnnncaaaagaatcatcaaataacttaaaagaagataaagt 101
               |||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaacaaaagaatcatcaaataacttaaaagaagataaagt 101


 Score = 30.2 bits (15), Expect = 6.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 1029 aacttttttaaaatt 1043
            |||||||||||||||
Sbjct: 381  aacttttttaaaatt 367


 Score = 30.2 bits (15), Expect = 6.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 367  aattttaaaaaagtt 381
            |||||||||||||||
Sbjct: 1043 aattttaaaaaagtt 1029


>Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Contig-U11827-1Q.Seq.d
          Length = 1277

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 171 taataataataaacaacaacaa 192
           ||||||||||||||||||||||
Sbjct: 879 taataataataaacaacaacaa 900


>Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Contig-U11780-1Q.Seq.d
          Length = 1866

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 171 taataataataaacaacaacaa 192
           ||||||||||||||||||||||
Sbjct: 557 taataataataaacaacaacaa 578


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,911
Number of Sequences: 6905
Number of extensions: 54911
Number of successful extensions: 6442
Number of sequences better than 10.0: 690
length of query: 1389
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1373
effective length of database: 5,564,391
effective search space: 7639908843
effective search space used: 7639908843
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Contig-U12581-1Q.Seq.d
         (1389 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267684) Dictyostelium discoideum vegetative cDNA clone:VS...  1176   0.0    1
(AU267683) Dictyostelium discoideum vegetative cDNA clone:VS...   902   0.0    2
(AU267709) Dictyostelium discoideum vegetative cDNA clone:VS...   817   0.0    2
(AU267710) Dictyostelium discoideum vegetative cDNA clone:VS...   264   8e-66  1
(BJ446652) Dictyostelium discoideum cDNA clone:ddv63m07, 3' ...   111   7e-20  1
(BJ427731) Dictyostelium discoideum cDNA clone:ddv63m07, 5' ...   111   7e-20  1
(AU266418) Dictyostelium discoideum vegetative cDNA clone:VS...    50   1e-09  2
(AU266419) Dictyostelium discoideum vegetative cDNA clone:VS...    50   1e-09  2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   4e-08  15
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   7e-08  21
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    42   1e-05  18
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   2e-05  14
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   3e-05  17
(AE017263) Mesoplasma florum L1 complete genome.                   34   3e-04  19
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   3e-04  16
(AE017308) Mycoplasma mobile 163K complete genome.                 36   5e-04  18
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   6e-04  11
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    38   7e-04  13
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   0.001  17
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    40   0.002  20
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.003  22
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    38   0.003  12
(Z11874) Euglena gracilis Z chloroplast DNA.                       36   0.004  10
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.005  16
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    34   0.005  20
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    34   0.006  14
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.007  18
(AY352277) Apis mellifera complementary sex determiner (csd)...    36   0.008  7
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   0.008  15
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    44   0.009  14
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    32   0.009  13
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    42   0.014  15
(CP000361) Arcobacter butzleri RM4018, complete genome.            40   0.023  21
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            36   0.024  19
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    38   0.031  19
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    36   0.037  12
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    40   0.039  21
(AC164863) Bos taurus clone CH240-150P18, *** SEQUENCING IN ...    32   0.040  10
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.042  17
(AE002120) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    34   0.048  6
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   0.054  10
(CU651656) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.057  7
(DD010736) Diagnosis of known genetic Parameters within the ...    34   0.061  19
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    36   0.067  22
(AM454892) Vitis vinifera contig VV78X034918.4, whole genome...    40   0.072  4
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   0.073  13
(DY887298) CeleSEQ3242 Cunninghamella elegans pBluescript (E...    36   0.096  4
(AC172227) Bos taurus clone CH240-267F2, WORKING DRAFT SEQUE...    38   0.10   7
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   0.11   14
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio...    32   0.13   8
(AC149494) Medicago truncatula clone mth2-116m7, complete se...    36   0.14   6
(AC215840) Populus trichocarpa clone POP043-C12, complete se...    44   0.16   9
(EK250255) 1095460276752 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.17   2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   0.17   16
(AP008983) Clostridium phage c-st genomic DNA, complete genome.    40   0.18   10
(EK387459) 1095469488615 Global-Ocean-Sampling_GS-31-01-01-1...    32   0.19   4
(AX344570) Sequence 21 from Patent WO0200932.                      34   0.19   14
(AM285303) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.19   9
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...    40   0.20   6
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         32   0.21   19
(BX465201) Zebrafish DNA sequence from clone DKEY-15F11 in l...    36   0.22   8
(CU071936) AGENAE Rainbow trout multi-tissues library (tcce)...    50   0.23   1
(EK128133) 1092995802036 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.23   3
(AL023828) Caenorhabditis elegans YAC Y17G7B.                      36   0.27   9
(AB265408) Xandrames dholaria gene for 16S rRNA, partial seq...    36   0.27   3
(ER385856) 1094424006194 Global-Ocean-Sampling_GS-34-01-01-1...    44   0.29   2
(EJ192594) 1092344211834 Global-Ocean-Sampling_GS-27-01-01-1...    32   0.30   4
(AC216766) Populus trichocarpa clone POP029-O12, complete se...    36   0.31   8
(DU959203) 229968 Tomato MboI BAC Library Solanum lycopersic...    46   0.33   2
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    34   0.33   11
(BX649487) Zebrafish DNA sequence from clone DKEY-148C4 in l...    32   0.33   11
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    38   0.37   15
(AC157177) Bos taurus clone CH240-68C12, WORKING DRAFT SEQUE...    34   0.41   9
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.46   12
(CS468878) Sequence 69 from Patent EP1748080.                      32   0.48   12
(CS419355) Sequence 69 from Patent WO2006094836.                   32   0.48   12
(AC023396) Homo sapiens chromosome 8, clone RP11-545M21, com...    40   0.48   8
(AX344554) Sequence 5 from Patent WO0200932.                       34   0.49   13
(AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.51   8
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    38   0.53   21
(CE789972) tigr-gss-dog-17000317801560 Dog Library Canis lup...    36   0.65   2
(BX323008) Zebrafish DNA sequence from clone DKEY-29D16 in l...    44   0.67   8
(AC144340) Medicago truncatula clone mth2-7k2, complete sequ...    40   0.67   8
(AC119857) Mus musculus chromosome 3, clone RP23-257A18, com...    44   0.68   2
(BM901837) rc49c04.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    46   0.69   2
(CP000049) Borrelia turicatae 91E135, complete genome.             34   0.70   22
(FH209801) CHO_OF3185xh07f1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   0.71   4
(AC153317) Colobus guereza clone CH272-362P12, complete sequ...    36   0.72   7
(EB901064) 9948508 ZF28 Danio rerio cDNA clone 3321592, mRNA...    36   0.78   2
(CE350478) tigr-gss-dog-17000334171826 Dog Library Canis lup...    46   0.81   2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   0.88   18
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   0.88   16
(EF514212) Solanum tuberosum strain P6/210 contig R1, comple...    48   0.90   1
(AC149288) Solanum demissum chromosome 5 clone PGEC446J10, c...    48   0.90   1
(AL445466) Human DNA sequence from clone RP11-453O22 on chro...    48   0.90   1
(AL603862) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.90   1
(AC163958) Sus scrofa clone RP44-27M21, WORKING DRAFT SEQUEN...    48   0.90   1
(AC015608) Homo sapiens clone RP11-45F5, WORKING DRAFT SEQUE...    48   0.90   1
(AZ692505) ENTIE72TR Entamoeba histolytica Sheared DNA Entam...    48   0.90   1
(EK295196) 1095462344985 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.90   1

>(AU267684) Dictyostelium discoideum vegetative cDNA clone:VSH592, 3'
            end single read.
          Length = 667

 Score = 1176 bits (593), Expect = 0.0
 Identities = 593/593 (100%)
 Strand = Plus / Plus


Query: 724  tttaattgtccacttgaagttggtagtttcccatcaacctgtactgaaatccaatttggt 783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tttaattgtccacttgaagttggtagtttcccatcaacctgtactgaaatccaatttggt 60


Query: 784  agttcattcagccaagatattaaacaaggtcatttaccagataatttaatatctttgaat 843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   agttcattcagccaagatattaaacaaggtcatttaccagataatttaatatctttgaat 120


Query: 844  ttaggccactatttcaatagagatttcattctaccatcaacatcagctacattgaaaacc 903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ttaggccactatttcaatagagatttcattctaccatcaacatcagctacattgaaaacc 180


Query: 904  ttaattttgtcaattaattttaatttaccacttaaagtaggtgaccttccaacaagttta 963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  ttaattttgtcaattaattttaatttaccacttaaagtaggtgaccttccaacaagttta 240


Query: 964  gaacatttagaatttggtgatgaatttaataaaccattagcaaagggtgtgttaccacca 1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gaacatttagaatttggtgatgaatttaataaaccattagcaaagggtgtgttaccacca 300


Query: 1024 aatctaacttttttaaaattaagtaaatactttgctcaacaattaaaagctggtgattta 1083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  aatctaacttttttaaaattaagtaaatactttgctcaacaattaaaagctggtgattta 360


Query: 1084 ccatcatcaattaaaacattaataatctcaagtgtaaaattaaatgaatcaatgataaaa 1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  ccatcatcaattaaaacattaataatctcaagtgtaaaattaaatgaatcaatgataaaa 420


Query: 1144 gcaattccttcaagtgtaacttatttaatactatcctatttaccatctacaatcaataaa 1203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  gcaattccttcaagtgtaacttatttaatactatcctatttaccatctacaatcaataaa 480


Query: 1204 tatacttcactattacaaccaatctcaacaacactaaatcatttagaatacttttattct 1263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  tatacttcactattacaaccaatctcaacaacactaaatcatttagaatacttttattct 540


Query: 1264 caagatgaaaatccaattgatttcactcaattaccaaatggtttaaaagtaac 1316
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  caagatgaaaatccaattgatttcactcaattaccaaatggtttaaaagtaac 593

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,727,622,355
Number of extensions: 122828347
Number of successful extensions: 11074755
Number of sequences better than 10.0: 368
Length of query: 1389
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1365
Effective length of database: 97,308,875,965
Effective search space: 132826615692225
Effective search space used: 132826615692225
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Contig-U12581-1Q.Seq.d
         (1389 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos...   111   7e-23
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing...   108   4e-22
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...   106   2e-21
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso...   103   2e-20
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso...    94   2e-17
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            92   3e-17
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    92   3e-17
(Q1ZXK1) RecName: Full=FNIP repeat-containing protein DDB_G02773...    91   1e-16
AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso...    90   2e-16
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...    87   1e-15
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740...    87   2e-15
(Q8T126) RecName: Full=Probable inactive serine/threonine-protei...    86   2e-15
(Q5UR85) RecName: Full=Putative FNIP repeat-containing protein R...    82   4e-14
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom...    81   8e-14
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...    81   1e-13
AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos...    80   1e-13
(Q54JC0) RecName: Full=Calmodulin-binding protein CmbB; AltName:...    80   2e-13
AC116986_27(AC116986|pid:none) Dictyostelium discoideum chromoso...    73   2e-11
AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromoso...    71   1e-10
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    69   3e-10
(Q5UQL2) RecName: Full=Putative F-box and FNIP repeat-containing...    69   4e-10
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719...    67   1e-09
AC116977_30(AC116977|pid:none) Dictyostelium discoideum chromoso...    67   2e-09
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...    66   3e-09
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom...    66   3e-09
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso...    65   4e-09
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    65   8e-09
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    63   2e-08
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    62   5e-08
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso...    60   1e-07
AC116957_6(AC116957|pid:none) Dictyostelium discoideum chromosom...    60   2e-07
AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso...    60   2e-07
AC116957_4(AC116957|pid:none) Dictyostelium discoideum chromosom...    59   3e-07
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    58   7e-07
AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom...    57   1e-06
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso...    57   1e-06
(Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L...    57   1e-06
(Q5UPW6) RecName: Full=Putative FNIP repeat-containing protein L...    56   3e-06
AC116957_13(AC116957|pid:none) Dictyostelium discoideum chromoso...    56   3e-06
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom...    53   3e-05
AC117072_27(AC117072|pid:none) Dictyostelium discoideum chromoso...    52   5e-05
AE009952_3351(AE009952|pid:none) Yersinia pestis KIM, complete g...    45   0.006
EU189480_1(EU189480|pid:none) Brassica oleracea cultivar KT18 fl...    44   0.011
EU189482_1(EU189482|pid:none) Brassica rapa cultivar TO1441 flag...    44   0.014
CP000950_733(CP000950|pid:none) Yersinia pseudotuberculosis YPII...    43   0.031
AP006628_726(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    42   0.041
AP006628_557(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    42   0.041
AP006628_525(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    42   0.041
AP006628_315(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    42   0.041
CP000061_85(CP000061|pid:none) Aster yellows witches'-broom phyt...    42   0.041
A71400(A71400) probable disease resistance protein - Arabidopsis...    42   0.053
CP001391_349(CP001391|pid:none) Wolbachia sp. wRi, complete geno...    42   0.053
CP000728_381(CP000728|pid:none) Clostridium botulinum F str. Lan...    42   0.069
AC116984_74(AC116984|pid:none) Dictyostelium discoideum chromoso...    41   0.091
AB052051_1(AB052051|pid:none) Astragalus jessenii chloroplast nd...    41   0.091
AC115604_7(AC115604|pid:none) Dictyostelium discoideum chromosom...    41   0.12
FJ793530_1(FJ793530|pid:none) Avian orthoreovirus isolate ISR521...    41   0.12
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso...    40   0.20
FM992688_643(FM992688|pid:none) Candida dubliniensis CD36 chromo...    40   0.20
AB052049_1(AB052049|pid:none) Astragalus curvipes chloroplast nd...    40   0.26
CP000939_408(CP000939|pid:none) Clostridium botulinum B1 str. Ok...    40   0.26
CP000084_152(CP000084|pid:none) Candidatus Pelagibacter ubique H...    40   0.26
CP000745_1662(CP000745|pid:none) Methanococcus maripaludis C7, c...    39   0.45
AB052073_1(AB052073|pid:none) Astragalus verus chloroplast ndhF ...    39   0.45
CP000500_39(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso...    39   0.45
CU179680_253(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    39   0.59
AF410153_34(AF410153|pid:none) Swinepox virus isolate 17077-99, ...    38   0.77
AB052055_1(AB052055|pid:none) Astragalus hamosus chloroplast ndh...    38   0.77
AC105319_5(AC105319|pid:none) Oryza sativa (japonica cultivar-gr...    38   1.0
AC117081_26(AC117081|pid:none) Dictyostelium discoideum chromoso...    38   1.0
AB052075_1(AB052075|pid:none) Astragalus capito chloroplast ndhF...    38   1.0
AC137928_2(AC137928|pid:none) Oryza sativa (japonica cultivar-gr...    38   1.0
AE014188_443(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.0
AP002522_21(AP002522|pid:none) Oryza sativa Japonica Group genom...    38   1.0
AB052050_1(AB052050|pid:none) Astragalus vereskensis chloroplast...    37   1.3
AM946015_1186(AM946015|pid:none) Streptococcus uberis 0140J comp...    37   1.3
AM910989_60(AM910989|pid:none) Plasmodium knowlesi strain H chro...    37   1.3
CP000867_229(CP000867|pid:none) Methanococcus maripaludis C6, co...    37   1.3
AB052056_1(AB052056|pid:none) Astragalus subsecundus chloroplast...    37   1.7
CP000084_706(CP000084|pid:none) Candidatus Pelagibacter ubique H...    37   1.7
AM474364_1(AM474364|pid:none) Vitis vinifera contig VV78X235433....    37   1.7
AB052046_1(AB052046|pid:none) Astragalus schmalhausenii chloropl...    37   1.7
AY248889_1(AY248889|pid:none) Plasmodium falciparum var1 erythro...    37   1.7
AB052068_1(AB052068|pid:none) Astragalus submitis chloroplast nd...    37   1.7
AB052072_1(AB052072|pid:none) Astragalus straussii chloroplast n...    37   1.7
AB052065_1(AB052065|pid:none) Astragalus horridus chloroplast nd...    37   2.2
AF063866_253(AF063866|pid:none) Melanoplus sanguinipes entomopox...    37   2.2
AB052066_1(AB052066|pid:none) Astragalus schistocalyx chloroplas...    37   2.2
AB052054_1(AB052054|pid:none) Astragalus odoratus chloroplast nd...    36   2.9
AB052069_1(AB052069|pid:none) Astragalus campylanthus chloroplas...    36   2.9
AB052045_1(AB052045|pid:none) Astragalus oxyglottis chloroplast ...    36   2.9
CP000305_2411(CP000305|pid:none) Yersinia pestis Nepal516, compl...    36   3.8
CP000950_2475(CP000950|pid:none) Yersinia pseudotuberculosis YPI...    36   3.8
CR380958_415(CR380958|pid:none) Candida glabrata strain CBS138 c...    36   3.8
A57676(A57676) protein kinase Xa21 (EC 2.7.1.-), receptor type p...    36   3.8
CP000312_1562(CP000312|pid:none) Clostridium perfringens SM101, ...    36   3.8
CP000720_2379(CP000720|pid:none) Yersinia pseudotuberculosis IP ...    36   3.8
CP000361_461(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    36   3.8
AE009952_2561(AE009952|pid:none) Yersinia pestis KIM, complete g...    36   3.8
AB052062_1(AB052062|pid:none) Astragalus echinatus chloroplast n...    35   5.0
AC126784_3(AC126784|pid:none) Medicago truncatula clone mth2-36b...    35   5.0
AB052059_1(AB052059|pid:none) Astragalus ochreatus chloroplast n...    35   5.0
BA000016_1625(BA000016|pid:none) Clostridium perfringens str. 13...    35   5.0
CP000048_283(CP000048|pid:none) Borrelia hermsii DAH, complete g...    35   5.0
AF102990_11(AF102990|pid:none) Yersinia enterocolitica plasmid p...    35   6.5
BT071589_1(BT071589|pid:none) Picea sitchensis clone WS02926_D15...    35   6.5
AE016823_1986(AE016823|pid:none) Leptospira interrogans serovar ...    35   6.5
AP009356_55(AP009356|pid:none) Onion yellows phytoplasma OY-W ge...    35   6.5
(Q9LPG6) RecName: Full=Probable rhamnose biosynthetic enzyme 2; ...    35   6.5
T16199(T16199) hypothetical protein F28B4.3 - Caenorhabditis ele...    35   6.5
AP006628_503(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    35   6.5
CP001098_1890(CP001098|pid:none) Halothermothrix orenii H 168, c...    35   6.5
CP000236_177(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan...    35   8.5
BC027228_1(BC027228|pid:none) Mus musculus polyribonucleotide nu...    35   8.5
AK165566_1(AK165566|pid:none) Mus musculus brain CRL-1443 BC3H1 ...    35   8.5

>AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromosome 2
            map 2567470-3108875 strain AX4, complete sequence.
          Length = 471

 Score =  111 bits (277), Expect = 7e-23
 Identities = 106/351 (30%), Positives = 167/351 (47%), Gaps = 13/351 (3%)
 Frame = +1

Query: 202  DNSELFFKLLKNQYIKNEIFKQCKLYKQYSNEKYLVQDYKEFSEIKE--INCYIKELNFK 375
            DNS LFFK+ +N  +K +I++   L       KY +Q+ KE  +++E     YI+ + F
Sbjct: 19   DNSILFFKIWRNIVLKKKIWQDAILI-----SKYDIQNIKEIKQLREHKYREYIRTIKF- 72

Query: 376  KVDPFLGFNDLINEIKIPKTIEIISFGFDKQSFKDINLGLILPKSISTLKIGKYPKQVIL 555
             VD    FNDL+ E  IP  +  I FG    +F       +LP S++TL +G    Q I
Sbjct: 73   -VD---HFNDLLEEGDIPNNVSTIDFGV---AFDTRISARVLPNSLTTLDLGIQFNQSI- 124

Query: 556  EPTDIPKHIKKLVLEEGFENQRTYSKTKYVSTIPFIPSTVKTLVINSTYFGTXXXXFNCP 735
            +   +PK++K +                                    YF      FN P
Sbjct: 125  DCGVLPKNLKNI------------------------------------YFS---HLFNKP 145

Query: 736  LEVGSFPSTCTEIQF--GSSFSQDIKQGHLPDNLISLNLGHYFNRDF---ILPSTSATLK 900
            + V S P++   I F    SF+ +IK G LP++L SLNLG+ +N  F   +LP+   +LK
Sbjct: 146  ILVNSIPNSVKLIDFRNSPSFNTEIKIGSLPNSLTSLNLGYKYNIKFKEGVLPN---SLK 202

Query: 901  TLILSINFNLPLKVGDLPTSLEHLEFGDEFNKPLAKGVLPPNLTFLKLSKYFAQQLKAGD 1080
             LI+S N+N P+K GDLP S+  L  G+ +++ +    LP +L  L +     +Q++  +
Sbjct: 203  KLIISENYNFPIKKGDLPNSITSLTLGN-YDQNIKSDELPESLKVLIMGPLQTKQIEISN 261

Query: 1081 LPSSIKTLIISSVKLNESMIKAIPSSVTYLILSY------LPSTINKYTSL 1215
            L   I+ L +S     +   K  P S+  L L+Y      LP++I+  T +
Sbjct: 262  L-KYIEKLTLSD--YYDVQYKDFPKSLKILNLAYKYNKPILPNSIDNITEI 309

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 90/355 (25%), Positives = 151/355 (42%), Gaps = 26/355 (7%)
 Frame = +1

Query: 337  KEINCYIKELNFKKVDPFLGFNDLINEIKIPKTIEIISFGFDKQSFKDINLGLILPKSIS 516
            + I+C +   N K +     FN  I    IP ++++I F        +I +G  LP S++
Sbjct: 122  QSIDCGVLPKNLKNIYFSHLFNKPILVNSIPNSVKLIDFRNSPSFNTEIKIGS-LPNSLT 180

Query: 517  TLKIGKYPKQVILEPTDIPKHIKKLVLEEGFE----------NQRTYSKTKYVSTIPF-- 660
            +L +G Y   +  +   +P  +KKL++ E +           +  + +   Y   I
Sbjct: 181  SLNLG-YKYNIKFKEGVLPNSLKKLIISENYNFPIKKGDLPNSITSLTLGNYDQNIKSDE 239

Query: 661  IPSTVKTLVI-----------NSTYFGTXXXXFNCPLEVGSFPSTCTEIQFGSSFSQDIK 807
            +P ++K L++           N  Y           ++   FP +   +     +++ I
Sbjct: 240  LPESLKVLIMGPLQTKQIEISNLKYIEKLTLSDYYDVQYKDFPKSLKILNLAYKYNKPIL 299

Query: 808  QGHLPDNLISLNLGHYFNRDFILPSTSATLKTLILSINFNLPLKVGDLPTSLEHLEFGDE 987
               + DN+  +  G  FN+   L ST  ++K L+    FN  LK   L   +E L FG
Sbjct: 300  PNSI-DNITEITFGSEFNQPIEL-STFKSIKKLVFGARFNQELKPYTLNDGIESLSFGYF 357

Query: 988  FNKPLAKGVLPPNLTFLKLSKYFAQQLKAGDLPSSIKTLIISSVKLNESMIK---AIPSS 1158
            +NK      LP  LT+LKL + F Q ++ G  P+SIK LI S+  LN+S +    +IP+
Sbjct: 358  YNKKFQSNSLPSTLTYLKLGREFNQIVEPGIFPNSIKHLIYSN--LNKSPLPLPFSIPNG 415

Query: 1159 VTYLILSYLPSTINKYTSLLQPISTTLNHLEYFYSQDENPIDFTQLPNGLKVTYS 1323
               +ILS   S    ++     I  T   L          +D   LP G K+ Y+
Sbjct: 416  CKKIILS---SQFQNHSISNNVIPNTCTELTISELYKRELLDLNSLPKGCKLLYA 467

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,659,611,190
Number of extensions: 31071824
Number of successful extensions: 105941
Number of sequences better than 10.0: 115
Number of HSP's gapped: 105307
Number of HSP's successfully gapped: 193
Length of query: 463
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 331
Effective length of database: 623,955,076
Effective search space: 206529130156
Effective search space used: 206529130156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.53  gvh: 0.06  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for Contig-U12581-1 is nuc
VS (DIR, S) 3
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0