NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12566-1
Contig ID Contig-U12566-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12566-1 (Contig-U12566-1Q) /CSM_Contig/Contig-U12566-1Q.Seq.d
CAATAAAAAACTTTACTACAAATATATATATATATATTCTGATTTATATA
TATAATTTTTTTTCAAATAAAAAATGAAGCAAAGAAATAACTTGCTTTAT
TTATTTAGTATTTTATATATAGTAGTAATATGTTTATGGGGTGTTAGTAA
TGTTGCAGTTGTAGAATCAGCTGCAATTAATACGAATGGAGGTAGTACAA
GTGATACTTACTGTCCATATCAAGCACTTCCAGACACATTAAATGATTTA
AATTTTTTAGGTTTCGATGGTGAATTCCACATACACGAAACTTTTTATTA
TAATTTCAAAAACTTTCAAAAATCAATATCTTTTACACTTTTACAAAAAA
GTGCTTTCCGTATTTATACTGCACCACATGTTGTAGATATTGATCTTTGG
TTATATAATAAATCTGATTCTTCAAAAGCTGTTGCTCATACATCAGATAT
GGGTGGTGATGAAAATTTATATGCAGAATTAGAAGCTGGCGAATATTTTA
TTAAATTTTTATTCTTTGGTCAAAATAAAGCAAGTCAATTAGATTGTACA
ACAATTACTTTAGAAATCGCCATNNNNNNNNN----------NNNNNNNN
NNTTCTCAAGCATTAATCAAACACTTTTCAATAGTGCCTCAAAATCCTAT
AGTTTGAATGCAGTTGCTGGTCAAACAATTCCAAGATATCAATATGTTTT
CGATAAAACCGATCTTAATCCACAAACTTTAGCCTCTGTAAATTTCACAA
TTCCAGACGATGGTGATGTAGATGGTATCTATTTCTTTGAATCAATCATA
GAGAGTAGTTTTGTATTGGGTGACGTTCGTTTAGTACTCACCGATTTAGC
AATGACTCAAGATCAATCAAATATCGTTTACGTTGGATCACATGATCGTA
ATCGTCATATCATTTCATTACGTATTTATCCAGGTGATTATCAAATTCAA
ATTCAAACTCCAAGAATCTCTCAAAATCAACTCGATTATCTTCCATCCTG
TTTAACCTATTCACTTAGTATGATCATTAAACCATCGAATGGTGATGAAT
TCGATCCATCATGTTTTGGTTTAGTTAGTATTTTACCAGGTGATTTAAAT
ACTCCAGCTTATTTAGGTACTTCAAATCGTTTACATGTCTCTGGTGAATA
TTTAATTCCAACTTTACCAATTTTCACTTCAACTAGTACCTATCACAATT
TCACCGTAGCATTGGATTCCATTCTTAGAGTTTACACTCAATACAATAAA
GTCGATATNATTTAAATCTTTANAAAAGGTAAATTAGTTTCAGGAATACT
CGTTTCTA
Gap gap included
Contig length 1298
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2591090
End point 2592373
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U12566
List of clone(s) 

est1=VHQ421F,1,573
est2=VHQ421Z,574,1280
Translated Amino Acid sequence 
nkklyykyiyiysdlyi*fffk*KMKQRNNLLYLFSILYIVVICLWGVSNVAVVESAAIN
TNGGSTSDTYCPYQALPDTLNDLNFLGFDGEFHIHETFYYNFKNFQKSISFTLLQKSAFR
IYTAPHVVDIDLWLYNKSDSSKAVAHTSDMGGDENLYAELEAGEYFIKFLFFGQNKASQL
DCTTITLEIAXXX---

---XXXFSSINQTLFNSASKSYSLNAVAGQTIPRYQYVFDKTDLNPQTLASVNFTIPDDG
DVDGIYFFESIIESSFVLGDVRLVLTDLAMTQDQSNIVYVGSHDRNRHIISLRIYPGDYQ
IQIQTPRISQNQLDYLPSCLTYSLSMIIKPSNGDEFDPSCFGLVSILPGDLNTPAYLGTS
NRLHVSGEYLIPTLPIFTSTSTYHNFTVALDSILRVYTQYNKVDXI*ifxkgklvsgilv
s
Translated Amino Acid sequence (All Frames) 
Frame A:
q*ktllqiyiyif*fiyiiffqikneakk*lalfi*yfiyssnmfmgc**ccscriscn*
yewr*yk*yllsisstsrhik*fkffrfrw*iphtrnfll*fqklskinifytftkkcfp
ylycttccry*slvi**i*ffksccsyirygw**kficrirswrify*ifilwsk*sksi
rlynnyfrnrhxxx---

---xxxxlkh*sntfq*clkil*fecscwsnnskisicfr*nrs*stnfslckfhnsrrw
*crwylfl*inhre*fcig*rsfsthrfsndsrsikyrlrwit*s*ssyhfitylsr*ls
nsnsnsknlskstrlssilfnlft*ydh*tiew**irsimfwfs*yftr*fkysslfryf
ksftclw*ifnsnftnfhfn*ylsqfhrsigfhs*slhsiq*sryxlnlxkr*isfrntr
f

Frame B:
nkklyykyiyiysdlyi*fffk*KMKQRNNLLYLFSILYIVVICLWGVSNVAVVESAAIN
TNGGSTSDTYCPYQALPDTLNDLNFLGFDGEFHIHETFYYNFKNFQKSISFTLLQKSAFR
IYTAPHVVDIDLWLYNKSDSSKAVAHTSDMGGDENLYAELEAGEYFIKFLFFGQNKASQL
DCTTITLEIAXXX---

---XXXFSSINQTLFNSASKSYSLNAVAGQTIPRYQYVFDKTDLNPQTLASVNFTIPDDG
DVDGIYFFESIIESSFVLGDVRLVLTDLAMTQDQSNIVYVGSHDRNRHIISLRIYPGDYQ
IQIQTPRISQNQLDYLPSCLTYSLSMIIKPSNGDEFDPSCFGLVSILPGDLNTPAYLGTS
NRLHVSGEYLIPTLPIFTSTSTYHNFTVALDSILRVYTQYNKVDXI*ifxkgklvsgilv
s

Frame C:
iknfttniyiyiliyiynffsnkk*skeitcfiylvfyi***yvygvlvmlql*nqlqli
rmevvqviltvhikhfqth*mi*if*vsmvnstytklfiiisktfknqyllhfykkvlsv
filhhml*ilifgyiinlilqklllihqiwvvmkiymqn*klanillnfyslvkikqvn*
ivqqll*kspxxx---

---xxxsqalikhfsivpqnpiv*mqllvkqfqdinmfsikpilihkl*pl*isqfqtmv
m*mvsislnqs*rvvlywvtfv*yspi*q*lkinqisftldhmivivisfhyvfiqviik
fkfklqeslkinsiifhpv*pihlv*slnhrmvmnsihhvlv*lvfyqvi*ilqli*vlq
ivymslvni*fqlyqfslqlvpitisp*hwipfleftlntiksixfkslxkvn*fqeysf
l
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12566-1 (Contig-U12566-1Q)
/CSM_Contig/Contig-U12566-1Q.Seq.d
         (1308 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12566-1 (Contig-U12566-1Q) /CSM_Contig/Conti...  1388  0.0
Contig-U09407-1 (Contig-U09407-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U07114-1 (Contig-U07114-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13362-1 (Contig-U13362-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11195-1 (Contig-U11195-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U02282-1 (Contig-U02282-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U14303-1 (Contig-U14303-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U14190-1 (Contig-U14190-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U12214-1 (Contig-U12214-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U12167-1 (Contig-U12167-1Q) /CSM_Contig/Conti...    36  0.093

>Contig-U12566-1 (Contig-U12566-1Q) /CSM_Contig/Contig-U12566-1Q.Seq.d
          Length = 1308

 Score = 1388 bits (700), Expect = 0.0
 Identities = 706/706 (100%)
 Strand = Plus / Plus

                                                                        
Query: 603  ttctcaagcattaatcaaacacttttcaatagtgcctcaaaatcctatagtttgaatgca 662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603  ttctcaagcattaatcaaacacttttcaatagtgcctcaaaatcctatagtttgaatgca 662

                                                                        
Query: 663  gttgctggtcaaacaattccaagatatcaatatgttttcgataaaaccgatcttaatcca 722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  gttgctggtcaaacaattccaagatatcaatatgttttcgataaaaccgatcttaatcca 722

                                                                        
Query: 723  caaactttagcctctgtaaatttcacaattccagacgatggtgatgtagatggtatctat 782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  caaactttagcctctgtaaatttcacaattccagacgatggtgatgtagatggtatctat 782

                                                                        
Query: 783  ttctttgaatcaatcatagagagtagttttgtattgggtgacgttcgtttagtactcacc 842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  ttctttgaatcaatcatagagagtagttttgtattgggtgacgttcgtttagtactcacc 842

                                                                        
Query: 843  gatttagcaatgactcaagatcaatcaaatatcgtttacgttggatcacatgatcgtaat 902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  gatttagcaatgactcaagatcaatcaaatatcgtttacgttggatcacatgatcgtaat 902

                                                                        
Query: 903  cgtcatatcatttcattacgtatttatccaggtgattatcaaattcaaattcaaactcca 962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  cgtcatatcatttcattacgtatttatccaggtgattatcaaattcaaattcaaactcca 962

                                                                        
Query: 963  agaatctctcaaaatcaactcgattatcttccatcctgtttaacctattcacttagtatg 1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  agaatctctcaaaatcaactcgattatcttccatcctgtttaacctattcacttagtatg 1022

                                                                        
Query: 1023 atcattaaaccatcgaatggtgatgaattcgatccatcatgttttggtttagttagtatt 1082
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 atcattaaaccatcgaatggtgatgaattcgatccatcatgttttggtttagttagtatt 1082

                                                                        
Query: 1083 ttaccaggtgatttaaatactccagcttatttaggtacttcaaatcgtttacatgtctct 1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 ttaccaggtgatttaaatactccagcttatttaggtacttcaaatcgtttacatgtctct 1142

                                                                        
Query: 1143 ggtgaatatttaattccaactttaccaattttcacttcaactagtacctatcacaatttc 1202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 ggtgaatatttaattccaactttaccaattttcacttcaactagtacctatcacaatttc 1202

                                                                        
Query: 1203 accgtagcattggattccattcttagagtttacactcaatacaataaagtcgatatnatt 1262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 accgtagcattggattccattcttagagtttacactcaatacaataaagtcgatatnatt 1262

                                                          
Query: 1263 taaatctttanaaaaggtaaattagtttcaggaatactcgtttcta 1308
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 taaatctttanaaaaggtaaattagtttcaggaatactcgtttcta 1308


 Score =  444 bits (224), Expect = e-124
 Identities = 224/224 (100%)
 Strand = Plus / Plus

                                                                       
Query: 64  caaataaaaaatgaagcaaagaaataacttgctttatttatttagtattttatatatagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  caaataaaaaatgaagcaaagaaataacttgctttatttatttagtattttatatatagt 123

                                                                       
Query: 124 agtaatatgtttatggggtgttagtaatgttgcagttgtagaatcagctgcaattaatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agtaatatgtttatggggtgttagtaatgttgcagttgtagaatcagctgcaattaatac 183

                                                                       
Query: 184 gaatggaggtagtacaagtgatacttactgtccatatcaagcacttccagacacattaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gaatggaggtagtacaagtgatacttactgtccatatcaagcacttccagacacattaaa 243

                                                       
Query: 244 tgatttaaattttttaggtttcgatggtgaattccacatacacg 287
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgatttaaattttttaggtttcgatggtgaattccacatacacg 287


 Score =  442 bits (223), Expect = e-124
 Identities = 223/223 (100%)
 Strand = Plus / Plus

                                                                       
Query: 351 gtgctttccgtatttatactgcaccacatgttgtagatattgatctttggttatataata 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtgctttccgtatttatactgcaccacatgttgtagatattgatctttggttatataata 410

                                                                       
Query: 411 aatctgattcttcaaaagctgttgctcatacatcagatatgggtggtgatgaaaatttat 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aatctgattcttcaaaagctgttgctcatacatcagatatgggtggtgatgaaaatttat 470

                                                                       
Query: 471 atgcagaattagaagctggcgaatattttattaaatttttattctttggtcaaaataaag 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atgcagaattagaagctggcgaatattttattaaatttttattctttggtcaaaataaag 530

                                                      
Query: 531 caagtcaattagattgtacaacaattactttagaaatcgccat 573
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 caagtcaattagattgtacaacaattactttagaaatcgccat 573


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  caataaaaaactttactacaa 21
          |||||||||||||||||||||
Sbjct: 1  caataaaaaactttactacaa 21


>Contig-U09407-1 (Contig-U09407-1Q) /CSM_Contig/Contig-U09407-1Q.Seq.d
          Length = 1047

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  tttatttatttagtatttta 115
           ||||||||||||||||||||
Sbjct: 975 tttatttatttagtatttta 956


>Contig-U07114-1 (Contig-U07114-1Q) /CSM_Contig/Contig-U07114-1Q.Seq.d
          Length = 290

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 494 tattttattaaatttttatt 513
           ||||||||||||||||||||
Sbjct: 116 tattttattaaatttttatt 97


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,381
Number of Sequences: 6905
Number of extensions: 19381
Number of successful extensions: 1892
Number of sequences better than 10.0: 238
length of query: 1308
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1292
effective length of database: 5,564,391
effective search space: 7189193172
effective search space used: 7189193172
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12566-1 (Contig-U12566-1Q) /CSM_Contig/Contig-U12566-1Q.Seq.d
         (1308 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446568) Dictyostelium discoideum cDNA clone:ddv63j06, 3' ...  1388   0.0    1
(BJ427649) Dictyostelium discoideum cDNA clone:ddv63j06, 5' ...   444   0.0    3
(AC127658) Rattus norvegicus clone CH230-92H1, *** SEQUENCIN...    52   0.054  1
(AM285314) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   0.21   5
(BV316043) S236P6294RE12.T0 AlaskanMalamute Canis familiaris...    50   0.21   1
(CP000393) Trichodesmium erythraeum IMS101, complete genome.       50   0.21   1
(AX345958) Sequence 1029 from Patent WO0200928.                    36   0.24   5
(DT777116) 125643653 TH1 Tribolium castaneum cDNA clone 22C1...    48   0.30   2
(AJ925742) Theileria annulata EST, clone tam008c09_q1k.            38   0.34   2
(CT954207) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.49   5
(CT212105) Sus scrofa genomic clone CH242-38N9, genomic surv...    36   0.77   2
(BZ938567) CH240_63L4.TV CHORI-240 Bos taurus genomic clone ...    36   0.84   3
(CR388054) Zebrafish DNA sequence from clone CH211-82E18 in ...    48   0.85   1
(BX005350) Zebrafish DNA sequence from clone DKEY-58C8 in li...    48   0.85   1
(AM481243) Vitis vinifera contig VV78X024453.13, whole genom...    48   0.85   1
(AC202404) Zea mays chromosome 6 clone CH201-221J4; ZMMBBc02...    48   0.85   1
(AC190279) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    48   0.85   1
(EI087576) hhe0001ce12.g1 hhe Oryza ridleyi genomic clone hh...    48   0.85   1
(BZ832541) CH240_189C13.TV CHORI-240 Bos taurus genomic clon...    36   0.91   3
(EK313347) 1095462404973 Global-Ocean-Sampling_GS-31-01-01-1...    38   1.1    2
(BZ951186) CH240_43G8.TJ CHORI-240 Bos taurus genomic clone ...    36   1.5    2
(AC055115) Homo sapiens chromosome 13 clone RP11-60A7, WORKI...    36   1.6    5
(AC161903) Bos taurus clone CH240-111C9, WORKING DRAFT SEQUE...    36   1.7    2
(AC172126) Bos taurus clone CH240-174H4, WORKING DRAFT SEQUE...    32   1.7    2
(AC156693) Bos taurus clone CH240-58N8, WORKING DRAFT SEQUEN...    36   1.7    2
(AC179697) Bos taurus clone CH240-476B9, WORKING DRAFT SEQUE...    32   1.7    2
(AC170447) Bos taurus clone CH240-260K1, WORKING DRAFT SEQUE...    36   1.7    2
(AM427863) Vitis vinifera contig VV78X216827.7, whole genome...    34   2.0    2
(AJ813751) Bos sp. EST, clone C0005205k11.                         36   2.2    2
(AJ812900) Bos sp. EST, clone C0005206a24.                         36   2.3    2
(CB009674) VVD004D09_127514 An expressed sequence tag databa...    34   2.3    2
(AF411931) Plasmodium falciparum strain Dd2 normocyte-bindin...    42   2.4    2
(AF411932) Plasmodium falciparum strain Malayan Camp K- norm...    42   2.4    2
(AF533700) Plasmodium falciparum 3D7 normocyte-binding prote...    42   2.4    2
(AF411930) Plasmodium falciparum strain HB3 normocyte-bindin...    42   2.4    2
(AF411933) Plasmodium falciparum strain 7G8 normocyte-bindin...    42   2.4    2
(AF411929) Plasmodium falciparum strain FVO normocyte-bindin...    42   2.4    2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    36   2.7    7
(ET980535) CHO_OF710xk17r1.ab1 CHO_OF Nicotiana tabacum geno...    44   2.9    2
(DX523692) GH_MBb0042M23r GH_MBb Gossypium hirsutum genomic ...    32   3.0    4
(AX345556) Sequence 627 from Patent WO0200928.                     40   3.0    3
(CR376745) Zebrafish DNA sequence from clone CH211-147K10 in...    46   3.3    1
(AL845548) Mouse DNA sequence from clone RP23-307N14 on chro...    46   3.3    1
(AC158121) Mus musculus chromosome 5, clone RP23-440H19, com...    46   3.3    1
(DQ309519) Lycianthes inaequilatera LFY (LFY) gene, intron I...    46   3.3    1
(AC082650) Homo sapiens BAC clone RP11-419L4 from 4, complet...    46   3.3    1
(AC152875) Bos taurus clone CH240-2I4, WORKING DRAFT SEQUENC...    46   3.3    1
(AC074174) Mus musculus strain C57BL6/J chromosome 5 clone R...    46   3.3    1
(CU570652) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU468650) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU468608) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU466358) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU457417) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU407140) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU407088) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(AC230425) Bos taurus clone CH240-509A11, WORKING DRAFT SEQU...    46   3.3    1
(AC205595) Zea mays chromosome 1 clone ZMMBBb-188J14; ZMMBBb...    46   3.3    1
(AC170558) Bos taurus clone CH240-243B13, WORKING DRAFT SEQU...    46   3.3    1
(AQ425399) CITBI-E1-2573L18.TR CITBI-E1 Homo sapiens genomic...    46   3.3    1
(FH705186) CHO_OF5170xj20r1.ab1 CHO_OF5 Nicotiana tabacum ge...    46   3.3    1
(FH705111) CHO_OF5170xj20f1.ab1 CHO_OF5 Nicotiana tabacum ge...    46   3.3    1
(FH697712) CHO_OF5031xj21r1.ab1 CHO_OF5 Nicotiana tabacum ge...    46   3.3    1
(FH506370) CHO_OF4823xd07r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   3.3    1
(FH506304) CHO_OF4823xd07f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   3.3    1
(CR072850) Forward strand read from insert in 3'HPRT inserti...    46   3.3    1
(AG685105) Macaca fuscata fuscata DNA, clone: MSB2-115I15_R,...    46   3.3    1
(AJ801162) Antirrhinum majus EST, clone 018_4_12_h09.              46   3.3    1
(AJ559201) Antirrhinum majus EST, clone 018_1_09_k18.              46   3.3    1
(BP649674) Arabidopsis thaliana cDNA clone:RAFL19-80-D07, 3'...    46   3.3    1
(ET727501) CHO_OF852xd18f1.ab1 CHO_OF Nicotiana tabacum geno...    44   3.4    2
(ET721306) CHO_OF851xd18f1.ab1 CHO_OF Nicotiana tabacum geno...    44   3.6    2
(EK404939) 1095500032796 Global-Ocean-Sampling_GS-31-01-01-1...    44   3.6    2
(CU468467) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.6    4
(CT467219) Sus scrofa genomic clone CH242-417O6, genomic sur...    38   3.7    2
(CU861902) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.1    6
(AC160436) Bos taurus clone CH240-85N9, WORKING DRAFT SEQUEN...    38   4.6    7
(AX349036) Sequence 494 from Patent WO0202807.                     36   5.1    6
(EG317475) MSAM299969_3480_1368 LCM-dissected maize inbred l...    40   5.5    2
(BH089572) RPCI-24-383G2.TVB RPCI-24 Mus musculus genomic cl...    38   5.7    3
(EY341786) CAWZ11350.rev CAWZ Helobdella robusta Primary Lat...    38   5.8    3
(AM435869) Vitis vinifera contig VV78X028694.4, whole genome...    36   5.8    4
(EY351832) CAWZ18328.rev CAWZ Helobdella robusta Primary Lat...    38   6.0    3
(CT967321) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   6.1    2
(CU856104) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   6.2    2
(CU468950) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   6.2    2
(EY350898) CAWZ17833.rev CAWZ Helobdella robusta Primary Lat...    38   6.5    3
(EY350590) CAWZ17676.rev CAWZ Helobdella robusta Primary Lat...    38   6.8    3
(EY364162) CAWZ9172.rev CAWZ Helobdella robusta Primary Late...    38   6.8    3
(AC209573) MACACA MULATTA BAC clone CH250-375H24 from chromo...    40   6.8    8
(DQ376035) Candida parapsilosis strain CLIB214 mitochondrion...    34   6.9    2
(X74411) Candida parapsilosis complete mitochondrial genome.       34   6.9    2
(AM457192) Vitis vinifera, whole genome shotgun sequence, co...    32   6.9    2
(X55653) C.parapsilosis atp6 gene for ATP synthase subunit 6.      34   8.3    2
(AC114323) Homo sapiens chromosome 5 clone RP11-93N19, compl...    42   8.4    4
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   9.0    9
(AC087506) Homo sapiens chromosome 18, clone RP11-726O24, co...    40   9.0    6
(EA723228) Sequence 102107 from patent US 7365185.                 34   9.0    3
(EK440519) 1095522084472 Global-Ocean-Sampling_GS-31-01-01-1...    36   9.4    3
(AC157385) Bos taurus clone CH240-61K23, WORKING DRAFT SEQUE...    38   9.4    3
(U49944) Caenorhabditis elegans cosmid C39E6, complete seque...    44   9.6    3

>(BJ446568) Dictyostelium discoideum cDNA clone:ddv63j06, 3' end,
            single read.
          Length = 707

 Score = 1388 bits (700), Expect = 0.0
 Identities = 706/706 (100%)
 Strand = Plus / Minus


Query: 603  ttctcaagcattaatcaaacacttttcaatagtgcctcaaaatcctatagtttgaatgca 662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  ttctcaagcattaatcaaacacttttcaatagtgcctcaaaatcctatagtttgaatgca 648


Query: 663  gttgctggtcaaacaattccaagatatcaatatgttttcgataaaaccgatcttaatcca 722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  gttgctggtcaaacaattccaagatatcaatatgttttcgataaaaccgatcttaatcca 588


Query: 723  caaactttagcctctgtaaatttcacaattccagacgatggtgatgtagatggtatctat 782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  caaactttagcctctgtaaatttcacaattccagacgatggtgatgtagatggtatctat 528


Query: 783  ttctttgaatcaatcatagagagtagttttgtattgggtgacgttcgtttagtactcacc 842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  ttctttgaatcaatcatagagagtagttttgtattgggtgacgttcgtttagtactcacc 468


Query: 843  gatttagcaatgactcaagatcaatcaaatatcgtttacgttggatcacatgatcgtaat 902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  gatttagcaatgactcaagatcaatcaaatatcgtttacgttggatcacatgatcgtaat 408


Query: 903  cgtcatatcatttcattacgtatttatccaggtgattatcaaattcaaattcaaactcca 962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407  cgtcatatcatttcattacgtatttatccaggtgattatcaaattcaaattcaaactcca 348


Query: 963  agaatctctcaaaatcaactcgattatcttccatcctgtttaacctattcacttagtatg 1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347  agaatctctcaaaatcaactcgattatcttccatcctgtttaacctattcacttagtatg 288


Query: 1023 atcattaaaccatcgaatggtgatgaattcgatccatcatgttttggtttagttagtatt 1082
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287  atcattaaaccatcgaatggtgatgaattcgatccatcatgttttggtttagttagtatt 228


Query: 1083 ttaccaggtgatttaaatactccagcttatttaggtacttcaaatcgtttacatgtctct 1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227  ttaccaggtgatttaaatactccagcttatttaggtacttcaaatcgtttacatgtctct 168


Query: 1143 ggtgaatatttaattccaactttaccaattttcacttcaactagtacctatcacaatttc 1202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167  ggtgaatatttaattccaactttaccaattttcacttcaactagtacctatcacaatttc 108


Query: 1203 accgtagcattggattccattcttagagtttacactcaatacaataaagtcgatatnatt 1262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107  accgtagcattggattccattcttagagtttacactcaatacaataaagtcgatatnatt 48


Query: 1263 taaatctttanaaaaggtaaattagtttcaggaatactcgtttcta 1308
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47   taaatctttanaaaaggtaaattagtttcaggaatactcgtttcta 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,372,856,693
Number of extensions: 87126316
Number of successful extensions: 6925134
Number of sequences better than 10.0: 101
Length of query: 1308
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1284
Effective length of database: 97,308,875,965
Effective search space: 124944596739060
Effective search space used: 124944596739060
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12566-1 (Contig-U12566-1Q) /CSM_Contig/Contig-U12566-1Q.Seq.d
         (1308 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000812_1144(CP000812|pid:none) Thermotoga lettingae TMO, compl...    36   2.7
AE001273_161(AE001273|pid:none) Chlamydia trachomatis D/UW-3/CX,...    35   4.6
CP000679_119(CP000679|pid:none) Caldicellulosiruptor saccharolyt...    35   7.8

>CP000812_1144(CP000812|pid:none) Thermotoga lettingae TMO, complete
           genome.
          Length = 441

 Score = 36.2 bits (82), Expect = 2.7
 Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
 Frame = +3

Query: 795 IIESSFVLGDVRLVLTDLAMTQDQSNIVYVGSHDRNRH------IISLRI-YPGDYQIQI 953
           I E+S ++GD +L + DL  T+D  + + +G++  + H      + +++I YPG+YQI +
Sbjct: 308 IRETSHIIGDYQLTIKDLLETRDFQDKIAIGAYPVDLHSPNSSGLKTIKIPYPGEYQIPL 367

Query: 954 QT 959
           ++
Sbjct: 368 RS 369

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,789,385,111
Number of extensions: 35604749
Number of successful extensions: 70807
Number of sequences better than 10.0: 3
Number of HSP's gapped: 70771
Number of HSP's successfully gapped: 3
Length of query: 436
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 304
Effective length of database: 623,955,076
Effective search space: 189682343104
Effective search space used: 189682343104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.95  gvh: 0.53  alm: 0.22  top: 0.13  tms: 0.07  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.56  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: Golgi
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for Contig-U12566-1 is mit
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0