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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12564-1
Contig ID Contig-U12564-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12564-1 (Contig-U12564-1Q) /CSM_Contig/Contig-U12564-1Q.Seq.d
AATTTATTTTTTAAACTTCAATTTATTTTTTATTTTATTTTTCATTTTTC
CATTTTATTTATTCACATATAAAAATTTAAATATATTTATATACATATAT
TTAATATTAATATTAAATAATACTATCTAAATGATTCAATCTTCAATTAG
AAAATGTTTAACTTCAATAAAACCAAATAATATAATTGGTAGAAGTAAAG
TTAACATTATCAATATCAATTTCAATATCAATAATAGAAACATTAGATAC
TTTGCATCAAATAGTAGTAGTAGTAATAATAATAATAATAATAATAATAA
CAATGGTAATAGCGGTGAAATATCAATGTGTAACAACAATATAAATAGTA
ACAATAATAATAGTAACAATAACAAAGAAAAAGATAATTTAATAAGAGTA
TTAGAAGATGATAAACTAAGGAATATTTCCACAACAGGATTAGTTGATAC
ATTATATAAAAAATCGAACCAATCTGAATTACCATTAGAGAATCCAATTT
CATCAATACAACAAGCTACTGGAGGCAGTAGTATAATGGAATTATCAGAA
CAATATACAGACCCATTATTAGATCCAGTTGTTAAAGTTTTCTCAGTTTT
AACTTCTCCAAATTATTTTATACCTTGGCAAATGAAACCACNNNNNNNNN
----------NNNNNNNNNNAACGAGTTACATCCATTNTCTGCCGCAAAA
GGATTGATTCAAGTAAAGGATATTATAACTCATATCAATGGTGTATCAGT
GGCTGATGATGGTTCAATTGCTTTTCGTAGACGTGAACGTATTAGTTTTG
GTTATCTATTTAGCAATCATTTCATTGGTGATCAAATCGATTTAACAGTA
TTAAGAAATGGTGAACGTTTAAATGTACGTGTACCATTGGTTAGTCAATT
CAGTGTTGTACCATTCCAAATGTATGATAGTCGTCCAAGTTATTTCGTTT
ATTCAGGTTTAGTTTTCGTACCAATCACTTATCCATTCTTACAAGAATTA
TCCGATGATTTGGCAGTAACCTATCGTAGAGTTTATGAACGTATTGAAAA
AATCACATCTGAAGATTTTCAAGTTGTCATATTATCTCAAGTACTTTTTG
ACAAAACTAATCATGGTTACTCAAATTTAAGTTTAACAGAGGTTAAAAGA
GTTAATGATATTCCAGTTAAAAATTTAAAACATTTAGTACATTTAATAGA
ATCAAATCAAAATCCTTATTTAGTCATCACTTTAGAACATGAAAACTTTA
TCATTTTGAAAAAAGATGAAGCTGATCAAGCAAATTTAAGAGTTATGAAA
CAACATGCAATTCCTCATTTAAAATCTGAAGATTTAAGATTATCTTCAAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATGATAATAATT
TAAATGTAAATCTTATAATAAGATAAGAAGTTATAAATA
Gap gap included
Contig length 1429
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4016152
End point 4017569
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U12564
List of clone(s) 

est1=VHP883F,1,641
est2=VHP883Z,642,1411
Translated Amino Acid sequence 
iyflnfnlffilffifpfylftyknlnifiyiylililnnti*MIQSSIRKCLTSIKPNN
IIGRSKVNIININFNINNRNIRYFASNSSSSNNNNNNNNNNGNSGEISMCNNNINSNNNN
SNNNKEKDNLIRVLEDDKLRNISTTGLVDTLYKKSNQSELPLENPISSIQQATGGSSIME
LSEQYTDPLLDPVVKVFSVLTSPNYFIPWQMKPXXX---

---XXXNELHPXSAAKGLIQVKDIITHINGVSVADDGSIAFRRRERISFGYLFSNHFIGD
QIDLTVLRNGERLNVRVPLVSQFSVVPFQMYDSRPSYFVYSGLVFVPITYPFLQELSDDL
AVTYRRVYERIEKITSEDFQVVILSQVLFDKTNHGYSNLSLTEVKRVNDIPVKNLKHLVH
LIESNQNPYLVITLEHENFIILKKDEADQANLRVMKQHAIPHLKSEDLRLSSNNNNNNNN
NNNNNNDNNLNVNLIIR*evin
Translated Amino Acid sequence (All Frames) 
Frame A:
nlffklqfifyfifhfsilfihi*kfkyiyihifninik*yylndsifn*kmfnfnktk*
ynw*k*s*hyqyqfqyq**kh*ilcik*************qw**r*ninv*qqyk**q**
**q*qrkr*fnksirr**tkeyfhnris*yii*kiepi*itiresnfinttsywrq*yng
iirtiyrpiirssc*sflsfnfsklfytlanettxx---

---xxxxrvtsixcrkridsskgyynsyqwcisg**wfncfs*t*ty*fwlsi*qsfhw*
snrfnsikkw*tfkctctig*siqcctipnv**ssklfrlfrfsfrtnhlsiltriir*f
gsnls*sl*ty*knhi*rfsschiisstf*qn*swllkfkfnrg*ks**yss*kfktfst
fnrikskslfshhfrt*klyhfekr*s*sskfksyettcnssfki*rfkiifk*******
*********fkcksynkirsyk

Frame B:
iyflnfnlffilffifpfylftyknlnifiyiylililnnti*MIQSSIRKCLTSIKPNN
IIGRSKVNIININFNINNRNIRYFASNSSSSNNNNNNNNNNGNSGEISMCNNNINSNNNN
SNNNKEKDNLIRVLEDDKLRNISTTGLVDTLYKKSNQSELPLENPISSIQQATGGSSIME
LSEQYTDPLLDPVVKVFSVLTSPNYFIPWQMKPXXX---

---XXXNELHPXSAAKGLIQVKDIITHINGVSVADDGSIAFRRRERISFGYLFSNHFIGD
QIDLTVLRNGERLNVRVPLVSQFSVVPFQMYDSRPSYFVYSGLVFVPITYPFLQELSDDL
AVTYRRVYERIEKITSEDFQVVILSQVLFDKTNHGYSNLSLTEVKRVNDIPVKNLKHLVH
LIESNQNPYLVITLEHENFIILKKDEADQANLRVMKQHAIPHLKSEDLRLSSNNNNNNNN
NNNNNNDNNLNVNLIIR*evin

Frame C:
fif*tsiyflfyfsffhfiyshiki*iylytyi*y*y*iilsk*fnlqlenv*lq*nqii
*lvevkltlsisisisiietldtlhqivvvviiiiiiiitmviavkyqcvtti*ivtiii
vtitkkkii**ey*kmin*gifpqqd*lihyiknrtnlnyh*riqfhqynklleavv*wn
yqnniqthy*iqllkfsqf*llqiilylgk*nhxxx---

---xxxtsyihxlpqkd*fk*ril*lismvyqwlmmvqllfvdvnvlvlviylaiislvi
ksi*qy*emvnv*myvyhwlvnsvlyhskcmivvqvisfiqv*fsyqslihsyknypmiw
q*pivefmnvlkkshlkifklsyylkyfltklimvtqi*v*qrlkelmifqlki*ni*yi
**nqikili*ssl*nmktlsf*kkmklikqi*el*nnmqfli*nlki*dylqiiiiiiii
iiiiimiii*m*il**dkkl*i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12564-1 (Contig-U12564-1Q)
/CSM_Contig/Contig-U12564-1Q.Seq.d
         (1439 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12564-1 (Contig-U12564-1Q) /CSM_Contig/Conti...  1338  0.0
Contig-U07089-1 (Contig-U07089-1Q) /CSM_Contig/Conti...   281  1e-75
Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U14518-1 (Contig-U14518-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U12854-1 (Contig-U12854-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U12113-1 (Contig-U12113-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U08778-1 (Contig-U08778-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U05921-1 (Contig-U05921-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U12717-1 (Contig-U12717-1Q) /CSM_Contig/Conti...    34  0.40

>Contig-U12564-1 (Contig-U12564-1Q) /CSM_Contig/Contig-U12564-1Q.Seq.d
          Length = 1439

 Score = 1338 bits (675), Expect = 0.0
 Identities = 678/678 (100%)
 Strand = Plus / Plus

                                                                        
Query: 671  aacgagttacatccattntctgccgcaaaaggattgattcaagtaaaggatattataact 730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671  aacgagttacatccattntctgccgcaaaaggattgattcaagtaaaggatattataact 730

                                                                        
Query: 731  catatcaatggtgtatcagtggctgatgatggttcaattgcttttcgtagacgtgaacgt 790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  catatcaatggtgtatcagtggctgatgatggttcaattgcttttcgtagacgtgaacgt 790

                                                                        
Query: 791  attagttttggttatctatttagcaatcatttcattggtgatcaaatcgatttaacagta 850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  attagttttggttatctatttagcaatcatttcattggtgatcaaatcgatttaacagta 850

                                                                        
Query: 851  ttaagaaatggtgaacgtttaaatgtacgtgtaccattggttagtcaattcagtgttgta 910
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  ttaagaaatggtgaacgtttaaatgtacgtgtaccattggttagtcaattcagtgttgta 910

                                                                        
Query: 911  ccattccaaatgtatgatagtcgtccaagttatttcgtttattcaggtttagttttcgta 970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  ccattccaaatgtatgatagtcgtccaagttatttcgtttattcaggtttagttttcgta 970

                                                                        
Query: 971  ccaatcacttatccattcttacaagaattatccgatgatttggcagtaacctatcgtaga 1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  ccaatcacttatccattcttacaagaattatccgatgatttggcagtaacctatcgtaga 1030

                                                                        
Query: 1031 gtttatgaacgtattgaaaaaatcacatctgaagattttcaagttgtcatattatctcaa 1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gtttatgaacgtattgaaaaaatcacatctgaagattttcaagttgtcatattatctcaa 1090

                                                                        
Query: 1091 gtactttttgacaaaactaatcatggttactcaaatttaagtttaacagaggttaaaaga 1150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 gtactttttgacaaaactaatcatggttactcaaatttaagtttaacagaggttaaaaga 1150

                                                                        
Query: 1151 gttaatgatattccagttaaaaatttaaaacatttagtacatttaatagaatcaaatcaa 1210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 gttaatgatattccagttaaaaatttaaaacatttagtacatttaatagaatcaaatcaa 1210

                                                                        
Query: 1211 aatccttatttagtcatcactttagaacatgaaaactttatcattttgaaaaaagatgaa 1270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 aatccttatttagtcatcactttagaacatgaaaactttatcattttgaaaaaagatgaa 1270

                                                                        
Query: 1271 gctgatcaagcaaatttaagagttatgaaacaacatgcaattcctcatttaaaatctgaa 1330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 gctgatcaagcaaatttaagagttatgaaacaacatgcaattcctcatttaaaatctgaa 1330

                              
Query: 1331 gatttaagattatcttca 1348
            ||||||||||||||||||
Sbjct: 1331 gatttaagattatcttca 1348


 Score =  527 bits (266), Expect = e-149
 Identities = 266/266 (100%)
 Strand = Plus / Plus

                                                                       
Query: 376 agaaaaagataatttaataagagtattagaagatgataaactaaggaatatttccacaac 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agaaaaagataatttaataagagtattagaagatgataaactaaggaatatttccacaac 435

                                                                       
Query: 436 aggattagttgatacattatataaaaaatcgaaccaatctgaattaccattagagaatcc 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aggattagttgatacattatataaaaaatcgaaccaatctgaattaccattagagaatcc 495

                                                                       
Query: 496 aatttcatcaatacaacaagctactggaggcagtagtataatggaattatcagaacaata 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aatttcatcaatacaacaagctactggaggcagtagtataatggaattatcagaacaata 555

                                                                       
Query: 556 tacagacccattattagatccagttgttaaagttttctcagttttaacttctccaaatta 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tacagacccattattagatccagttgttaaagttttctcagttttaacttctccaaatta 615

                                     
Query: 616 ttttataccttggcaaatgaaaccac 641
           ||||||||||||||||||||||||||
Sbjct: 616 ttttataccttggcaaatgaaaccac 641


 Score =  299 bits (151), Expect = 4e-81
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                       
Query: 123 ctatctaaatgattcaatcttcaattagaaaatgtttaacttcaataaaaccaaataata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctatctaaatgattcaatcttcaattagaaaatgtttaacttcaataaaaccaaataata 182

                                                                       
Query: 183 taattggtagaagtaaagttaacattatcaatatcaatttcaatatcaataatagaaaca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 taattggtagaagtaaagttaacattatcaatatcaatttcaatatcaataatagaaaca 242

                                          
Query: 243 ttagatactttgcatcaaatagtagtagtag 273
           |||||||||||||||||||||||||||||||
Sbjct: 243 ttagatactttgcatcaaatagtagtagtag 273


 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 301 caatggtaatagcggtgaaatat 323
           |||||||||||||||||||||||
Sbjct: 301 caatggtaatagcggtgaaatat 323


>Contig-U07089-1 (Contig-U07089-1Q) /CSM_Contig/Contig-U07089-1Q.Seq.d
          Length = 642

 Score =  281 bits (142), Expect = 1e-75
 Identities = 142/142 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1207 tcaaaatccttatttagtcatcactttagaacatgaaaactttatcattttgaaaaaaga 1266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376  tcaaaatccttatttagtcatcactttagaacatgaaaactttatcattttgaaaaaaga 435

                                                                        
Query: 1267 tgaagctgatcaagcaaatttaagagttatgaaacaacatgcaattcctcatttaaaatc 1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436  tgaagctgatcaagcaaatttaagagttatgaaacaacatgcaattcctcatttaaaatc 495

                                  
Query: 1327 tgaagatttaagattatcttca 1348
            ||||||||||||||||||||||
Sbjct: 496  tgaagatttaagattatcttca 517


>Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Contig-U14123-1Q.Seq.d
          Length = 620

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 211 caatatcaatttcaatatcaataata 236
           |||||||||| |||||||||||||||
Sbjct: 88  caatatcaatatcaatatcaataata 113


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 208 tatcaatatcaatttcaata 227
           ||||||||||||| ||||||
Sbjct: 91  tatcaatatcaatatcaata 110


 Score = 30.2 bits (15), Expect = 6.3
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 211 caatatcaatttcaatatcaata 233
           ||||| |||| ||||||||||||
Sbjct: 82  caataccaatatcaatatcaata 104


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,107
Number of Sequences: 6905
Number of extensions: 16107
Number of successful extensions: 1765
Number of sequences better than 10.0: 181
length of query: 1439
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1423
effective length of database: 5,564,391
effective search space: 7918128393
effective search space used: 7918128393
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12564-1 (Contig-U12564-1Q) /CSM_Contig/Contig-U12564-1Q.Seq.d
         (1439 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446464) Dictyostelium discoideum cDNA clone:ddv62f22, 3' ...  1338   0.0    1
(BJ427559) Dictyostelium discoideum cDNA clone:ddv62f22, 5' ...   488   0.0    2
(AU270976) Dictyostelium discoideum vegetative cDNA clone:VS...   281   4e-71  1
(AU270975) Dictyostelium discoideum vegetative cDNA clone:VS...   281   4e-71  1
(CU468601) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    54   0.015  1
(CU468018) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    54   0.015  1
(CE250078) tigr-gss-dog-17000335862938 Dog Library Canis lup...    54   0.015  1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    46   0.031  2
(AC184483) Strongylocentrotus purpuratus clone R3-1110K19, W...    52   0.060  1
(AP010259) Solanum lycopersicum DNA, chromosome 8, clone: C0...    48   0.075  6
(CU639399) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.24   1
(DX417735) MUGQ_CH252P031L02Sp6_GL428_005 CHORI-252 Vervet M...    42   0.27   2
(CL018535) CH216-3L5_Sp6.1 CH216 Xenopus (Silurana) tropical...    34   0.66   2
(BH462457) BOHOS20TR BOHO Brassica oleracea genomic clone BO...    46   0.89   2
(EJ230841) 1092402591156 Global-Ocean-Sampling_GS-27-01-01-1...    44   0.91   2
(AY009089) Camelpox virus CMS, complete genome.                    48   0.93   1
(AF438165) Camelpox virus M-96 from Kazakhstan, complete gen...    48   0.93   1
(AP009810) Lotus japonicus genomic DNA, chromosome 5, clone:...    48   0.93   1
(CU571341) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.93   1
(CU468086) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.93   1
(CU463905) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.93   1
(CL175525) 104_381_10892506_116_31765_106 Sorghum methylatio...    48   0.93   1
(DT513508) WS02422.B21_D23 PTxD-ICC-N-A-14 Populus trichocar...    48   0.93   1
(DT508900) WS02422.BR_D23 PTxD-ICC-N-A-14 Populus trichocarp...    48   0.93   1
(DR026790) Osmo01003 F. cylindrus osmotic stress library Fra...    48   0.93   1
(CV271724) WS0155.B21_H21 PTxN-IB-A-6 Populus trichocarpa x ...    48   0.93   1
(CV244315) WS0254.B21_F04 PT-MB-N-A-15 Populus trichocarpa c...    48   0.93   1
(CV226742) WS0165.B21_C13 PT-DX-A-7 Populus trichocarpa cDNA...    48   0.93   1
(EJ053880) 1095456015675 Global-Ocean-Sampling_GS-26-01-01-1...    44   1.0    2
(AC188527) Canis Familiaris chromosome 10, clone XX-29J8, co...    44   1.2    6
(EJ453033) 1093015455479 Global-Ocean-Sampling_GS-28-01-01-1...    36   1.2    2
(AC101255) Mus musculus clone RP23-99C20, LOW-PASS SEQUENCE ...    46   1.3    2
(EJ807925) 1093017471134 Global-Ocean-Sampling_GS-30-02-01-1...    36   1.3    2
(AC190122) Canis familiaris chromosome 10, clone XX-58O17, c...    44   1.8    5
(AC016727) Homo sapiens BAC clone RP11-355B11 from 2, comple...    36   1.9    2
(BJ427058) Dictyostelium discoideum cDNA clone:ddv61k05, 5' ...    36   2.5    2
(BJ332815) Dictyostelium discoideum cDNA clone:dda40m23, 5' ...    36   2.5    2
(BJ370906) Dictyostelium discoideum cDNA clone:ddc55l20, 5' ...    36   2.5    2
(AB232927) Clostridium botulinum B type B progenitor toxin g...    44   3.2    4
(AP006352) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   3.5    4
(BV027005) S212P60313FD2.T0 CZECHII/Ei Mus musculus STS geno...    46   3.7    1
(AC162459) Mus musculus chromosome 3, clone RP23-80A8, compl...    46   3.7    1
(AC157494) Mus musculus BAC clone RP23-2F1 from chromosome 1...    46   3.7    1
(AC141479) Mus musculus BAC clone RP23-281N15 from chromosom...    46   3.7    1
(AC139316) Mus musculus BAC clone RP24-500I24 from 3, comple...    46   3.7    1
(AC127290) Mus musculus BAC clone RP23-364F13 from chromosom...    46   3.7    1
(AC117767) Mus musculus chromosome 1, clone RP24-507O16, com...    46   3.7    1
(AC107677) Mus musculus chromosome 3, clone RP23-235F22, com...    46   3.7    1
(Z74813) S.cerevisiae chromosome XV reading frame ORF YOL071w.     46   3.7    1
(Z74812) S.cerevisiae chromosome XV reading frame ORF YOL070c.     46   3.7    1
(CT833317) Oryza sativa (indica cultivar-group) cDNA clone:O...    46   3.7    1
(AP009236) Lotus japonicus genomic DNA, chromosome 4, clone:...    46   3.7    1
(AP005493) Oryza sativa Japonica Group genomic DNA, chromoso...    46   3.7    1
(AP005442) Oryza sativa Japonica Group genomic DNA, chromoso...    46   3.7    1
(AP004637) Oryza sativa Japonica Group genomic DNA, chromoso...    46   3.7    1
(AP004589) Oryza sativa Japonica Group genomic DNA, chromoso...    46   3.7    1
(AM287032) Lotus japonicus hk1 gene for cytokinin receptor 1...    46   3.7    1
(AK120197) Oryza sativa Japonica Group cDNA clone:J013036M14...    46   3.7    1
(AK105596) Oryza sativa Japonica Group cDNA clone:001-200-A0...    46   3.7    1
(AC223441) Oryza glaberrima, complete sequence.                    46   3.7    1
(EA698330) Sequence 77209 from patent US 7365185.                  46   3.7    1
(DJ025883) Genome-wide DNA marker of Saccharomyces cerevisiae.     46   3.7    1
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    46   3.7    1
(AC114094) Rattus norvegicus clone CH230-89O15, *** SEQUENCI...    46   3.7    1
(AC114069) Rattus norvegicus clone CH230-209F20, WORKING DRA...    46   3.7    1
(AC107921) Homo sapiens chromosome 18 clone RP11-298H10 map ...    46   3.7    1
(AC107653) Mus musculus clone RP23-140F15, LOW-PASS SEQUENCE...    46   3.7    1
(AC098636) Rattus norvegicus clone CH230-148F22, WORKING DRA...    46   3.7    1
(CU468482) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.7    1
(CU041270) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.7    1
(AP009982) Lotus japonicus genomic DNA, clone: LjT33C23, TM0...    46   3.7    1
(AP003906) Oryza sativa Japonica Group genomic DNA, chromoso...    46   3.7    1
(AC224639) Bos taurus clone CH240-479M24, WORKING DRAFT SEQU...    46   3.7    1
(AC170602) Mus musculus chromosome 3 clone RP23-140F15, WORK...    46   3.7    1
(EJ821818) 1093017541154 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.7    1
(EE213059) c2l04z2.f1 Danio rerio 12am (night) eye/brain cDN...    46   3.7    1
(EB891329) 9888469 ZF26XL Danio rerio cDNA clone 3512431, mR...    46   3.7    1
(DY315139) AGENCOURT_66927599 NIH_MGC_366 Rattus norvegicus ...    46   3.7    1
(CV245785) WS0259.B21_G02 PT-MB-N-A-15 Populus trichocarpa c...    46   3.7    1
(CT850296) Oryza sativa Indica Group EST sequence:OSIGCSN053...    46   3.7    1
(CI356257) Oryza sativa Japonica Group cDNA, clone: J02B3094...    46   3.7    1
(CI338181) Oryza sativa Japonica Group cDNA, clone: J01B3163...    46   3.7    1
(CI316950) Oryza sativa Japonica Group cDNA, clone: J01B3036...    46   3.7    1
(CI000852) Oryza sativa Japonica Group cDNA, clone: 003-M013...    46   3.7    1
(CI000005) Oryza sativa Japonica Group cDNA, clone: 003-M001...    46   3.7    1
(CB664310) OSJNEd09P07.r OSJNEd Oryza sativa Japonica Group ...    46   3.7    1
(CB660120) OSJNEd01J20.r OSJNEd Oryza sativa Japonica Group ...    46   3.7    1
(CB660119) OSJNEd01J20.f OSJNEd Oryza sativa Japonica Group ...    46   3.7    1
(CB659558) OSJNEc16K09.r OSJNEc Oryza sativa Japonica Group ...    46   3.7    1
(CB659557) OSJNEc16K09.f OSJNEc Oryza sativa Japonica Group ...    46   3.7    1
(CB651803) OSJNEb16O16.r OSJNEb Oryza sativa Japonica Group ...    46   3.7    1
(CB651802) OSJNEb16O16.f OSJNEb Oryza sativa Japonica Group ...    46   3.7    1
(CB649599) OSJNEb13J20.f OSJNEb Oryza sativa Japonica Group ...    46   3.7    1
(CB630087) OSIIEb06N02.r OSIIEb Oryza sativa Indica Group cD...    46   3.7    1
(BM026649) ft10a01.x3 Zebrafish neuronal Danio rerio cDNA cl...    46   3.7    1
(BE131463) L48-1443T3 Ice plant Lambda Uni-Zap XR expression...    46   3.7    1
(BE033503) ME03F11 ME Mesembryanthemum crystallinum cDNA 5',...    46   3.7    1
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       46   3.7    1
(CU244509) Equus caballus GSS, BAC clone CH241-387N6, SP6 en...    40   3.7    2
(AF300469) Clostridium botulinum isolate 13280 type B crypti...    44   4.9    2

>(BJ446464) Dictyostelium discoideum cDNA clone:ddv62f22, 3' end,
            single read.
          Length = 770

 Score = 1338 bits (675), Expect = 0.0
 Identities = 678/678 (100%)
 Strand = Plus / Minus


Query: 671  aacgagttacatccattntctgccgcaaaaggattgattcaagtaaaggatattataact 730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  aacgagttacatccattntctgccgcaaaaggattgattcaagtaaaggatattataact 711


Query: 731  catatcaatggtgtatcagtggctgatgatggttcaattgcttttcgtagacgtgaacgt 790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  catatcaatggtgtatcagtggctgatgatggttcaattgcttttcgtagacgtgaacgt 651


Query: 791  attagttttggttatctatttagcaatcatttcattggtgatcaaatcgatttaacagta 850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  attagttttggttatctatttagcaatcatttcattggtgatcaaatcgatttaacagta 591


Query: 851  ttaagaaatggtgaacgtttaaatgtacgtgtaccattggttagtcaattcagtgttgta 910
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590  ttaagaaatggtgaacgtttaaatgtacgtgtaccattggttagtcaattcagtgttgta 531


Query: 911  ccattccaaatgtatgatagtcgtccaagttatttcgtttattcaggtttagttttcgta 970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530  ccattccaaatgtatgatagtcgtccaagttatttcgtttattcaggtttagttttcgta 471


Query: 971  ccaatcacttatccattcttacaagaattatccgatgatttggcagtaacctatcgtaga 1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470  ccaatcacttatccattcttacaagaattatccgatgatttggcagtaacctatcgtaga 411


Query: 1031 gtttatgaacgtattgaaaaaatcacatctgaagattttcaagttgtcatattatctcaa 1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410  gtttatgaacgtattgaaaaaatcacatctgaagattttcaagttgtcatattatctcaa 351


Query: 1091 gtactttttgacaaaactaatcatggttactcaaatttaagtttaacagaggttaaaaga 1150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350  gtactttttgacaaaactaatcatggttactcaaatttaagtttaacagaggttaaaaga 291


Query: 1151 gttaatgatattccagttaaaaatttaaaacatttagtacatttaatagaatcaaatcaa 1210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290  gttaatgatattccagttaaaaatttaaaacatttagtacatttaatagaatcaaatcaa 231


Query: 1211 aatccttatttagtcatcactttagaacatgaaaactttatcattttgaaaaaagatgaa 1270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230  aatccttatttagtcatcactttagaacatgaaaactttatcattttgaaaaaagatgaa 171


Query: 1271 gctgatcaagcaaatttaagagttatgaaacaacatgcaattcctcatttaaaatctgaa 1330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170  gctgatcaagcaaatttaagagttatgaaacaacatgcaattcctcatttaaaatctgaa 111


Query: 1331 gatttaagattatcttca 1348
            ||||||||||||||||||
Sbjct: 110  gatttaagattatcttca 93

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,266,692,290
Number of extensions: 77132939
Number of successful extensions: 6287995
Number of sequences better than 10.0: 144
Length of query: 1439
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1415
Effective length of database: 97,308,875,965
Effective search space: 137692059490475
Effective search space used: 137692059490475
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12564-1 (Contig-U12564-1Q) /CSM_Contig/Contig-U12564-1Q.Seq.d
         (1439 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC134933_2(AC134933|pid:none) Oryza sativa (japonica cultivar-gr...   153   2e-35
BT055662_1(BT055662|pid:none) Zea mays full-length cDNA clone ZM...   152   4e-35
BT039349_1(BT039349|pid:none) Zea mays full-length cDNA clone ZM...   151   5e-35
(O82261) RecName: Full=Protease Do-like 2, chloroplastic;       ...   141   5e-32
CP001323_289(CP001323|pid:none) Micromonas sp. RCC299 chromosome...   134   8e-30
CR954205_197(CR954205|pid:none) Ostreococcus tauri strain OTTH05...   133   2e-29
AK120193_1(AK120193|pid:none) Oryza sativa Japonica Group cDNA c...   132   2e-29
(Q9FIV6) RecName: Full=Protease Do-like 10, mitochondrial;      ...   130   9e-29
CP000585_192(CP000585|pid:none) Ostreococcus lucimarinus CCE9901...   129   3e-28
CP001326_231(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   127   8e-28
AP004800_16(AP004800|pid:none) Oryza sativa Japonica Group genom...   127   1e-27
AM432859_2(AM432859|pid:none) Vitis vinifera contig VV78X065016....   126   2e-27
(Q9SHZ1) RecName: Full=Putative protease Do-like 3, mitochondria...   125   4e-27
EU956976_1(EU956976|pid:none) Zea mays clone 1579317 unknown mRNA.    122   4e-26
(Q9SHZ0) RecName: Full=Protease Do-like 4, mitochondrial;       ...   115   5e-24
CP000838_79(CP000838|pid:none) Acaryochloris marina MBIC11017 pl...   112   3e-23
CP000844_47(CP000844|pid:none) Acaryochloris marina MBIC11017 pl...   112   3e-23
(Q9LK71) RecName: Full=Putative protease Do-like 11, mitochondri...   106   2e-21
BT062370_1(BT062370|pid:none) Zea mays full-length cDNA clone ZM...   106   2e-21
(Q9LK70) RecName: Full=Putative protease Do-like 12, mitochondri...   104   7e-21
EF576071_1(EF576071|pid:none) Oryza sativa (indica cultivar-grou...   104   9e-21
AP009179_311(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic D...    97   1e-18
(Q9FM41) RecName: Full=Putative protease Do-like 13;          EC...    95   6e-18
EF082592_1(EF082592|pid:none) Picea sitchensis clone WS02724_N17...    92   5e-17
CP001332_74(CP001332|pid:none) Micromonas sp. RCC299 chromosome ...    89   5e-16
AF541873_1(AF541873|pid:none) Plasmodium falciparum DegP-like se...    85   6e-15
AE016824_140(AE016824|pid:none) Leptospira interrogans serovar C...    81   8e-14
AE010301_178(AE010301|pid:none) Leptospira interrogans serovar L...    80   2e-13
CP000778_121(CP000778|pid:none) Leptospira biflexa serovar Patoc...    79   5e-13
BT037993_1(BT037993|pid:none) Zea mays full-length cDNA clone ZM...    64   1e-08
AC001229_16(AC001229|pid:none) Sequence of BAC F5I14 from Arabid...    62   4e-08
FJ168547_4(FJ168547|pid:none) Bodo saltans clone fosmid 5E15, co...    59   3e-07
CP001071_660(CP001071|pid:none) Akkermansia muciniphila ATCC BAA...    59   3e-07
AE010300_2947(AE010300|pid:none) Leptospira interrogans serovar ...    55   6e-06
CP000787_123(CP000787|pid:none) Leptospira biflexa serovar Patoc...    55   8e-06
CP000777_3012(CP000777|pid:none) Leptospira biflexa serovar Pato...    52   5e-05
CP000348_889(CP000348|pid:none) Leptospira borgpetersenii serova...    50   2e-04
FM209186_4577(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c...    39   0.47
CP000744_4699(CP000744|pid:none) Pseudomonas aeruginosa PA7, com...    39   0.62
AF073381_1(AF073381|pid:none) Leishmania major cdc2-related kina...    38   0.81
AJ001275_1(AJ001275|pid:none) Leishmania mexicana crk3 gene.           38   0.81
AM494972_66(AM494972|pid:none) Leishmania braziliensis chromosom...    38   0.81
CP001336_1060(CP001336|pid:none) Desulfitobacterium hafniense DC...    37   1.8
AP008230_4253(AP008230|pid:none) Desulfitobacterium hafniense Y5...    37   1.8
CU469464_456(CU469464|pid:none) Candidatus Phytoplasma mali stra...    37   1.8
(P54666) RecName: Full=Cell division control protein 2 homolog 3...    37   2.3
CP001280_2919(CP001280|pid:none) Methylocella silvestris BL2, co...    36   3.1
BX571856_1768(BX571856|pid:none) Staphylococcus aureus subsp. au...    36   4.0
DQ826109_1(DQ826109|pid:none) Lactobacillus helveticus CNRZ32 se...    36   4.0
CT573072_331(CT573072|pid:none) Kuenenia stuttgartiensis genome ...    36   4.0
AY811759_1(AY811759|pid:none) Schistosoma japonicum SJCHGC01995 ...    36   4.0
(Q9Z4H7) RecName: Full=Serine protease do-like htrA;          EC...    36   4.0
AJ938182_1586(AJ938182|pid:none) Staphylococcus aureus RF122 com...    36   4.0
CP001103_3152(CP001103|pid:none) Alteromonas macleodii 'Deep eco...    35   5.2
BT067565_1(BT067565|pid:none) Zea mays full-length cDNA clone ZM...    35   5.2
FN357321_41(FN357321|pid:none) Schistosoma mansoni genome sequen...    35   5.2
AX113072_1(AX113072|pid:none) Sequence 3 from Patent WO0127248. ...    35   5.2
AY429420_1(AY429420|pid:none) Nicotiana tabacum 5-phosphoribosyl...    35   5.2
CP000025_715(CP000025|pid:none) Campylobacter jejuni RM1221, com...    35   6.8
CP000248_3317(CP000248|pid:none) Novosphingobium aromaticivorans...    35   6.8
DQ498178_1(DQ498178|pid:none) Human rotavirus A isolate rj5323/0...    35   8.9
BA000043_332(BA000043|pid:none) Geobacillus kaustophilus HTA426 ...    35   8.9
CP001037_5680(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    35   8.9
DQ498183_1(DQ498183|pid:none) Human rotavirus A isolate rj5619/0...    35   8.9

>AC134933_2(AC134933|pid:none) Oryza sativa (japonica cultivar-group)
            chromosome 5 clone P0579A05, complete sequence.
            &AC137617_16(AC137617|pid:none)
            &AK073199_1(AK073199|pid:none)
            &AP008211_1188(AP008211|pid:none)
          Length = 614

 Score =  153 bits (386), Expect = 2e-35
 Identities = 89/227 (39%), Positives = 134/227 (59%), Gaps = 5/227 (2%)
 Frame = +2

Query: 671  NELHPXSAAKGLIQVKDIITHINGVSVADDGSIAFRRRERISFGYLFSNHFIGDQIDLTV 850
            + ++P S A  +++  DI+   +GV +A+DG++ FR RERI+F +L S    G+   L V
Sbjct: 367  SRINPLSDAHRVLKKDDILLEFDGVPIANDGTVPFRNRERITFDHLVSMKKPGEMAVLKV 426

Query: 851  LRNGERLNVRVPLVSQFSVVPFQMYDSRPSYFVYSGLVFVPITYPFLQELSDD-LAVTYR 1027
            LR+G+   + V +     +VP   +D  PSY++++G VF+P+T P+L E  +D    + R
Sbjct: 427  LRDGKEHELNVTVRPLQPLVPVHQFDKLPSYYIFAGFVFIPLTQPYLHEFGEDWYNNSPR 486

Query: 1028 RVYER----IEKITSEDFQVVILSQVLFDKTNHGYSNLSLTEVKRVNDIPVKNLKHLVHL 1195
            R+ ER    + K  +E  Q+VILSQVL D  N GY  L+  +VK+VN + V+NLKHL  L
Sbjct: 487  RLCERALRELPKKAAE--QLVILSQVLMDDINVGYERLAELQVKKVNGVEVENLKHLCSL 544

Query: 1196 IESNQNPYLVITLEHENFIILKKDEADQANLRVMKQHAIPHLKSEDL 1336
            +ES     L   L+ E  I+LK   A  A  R++K+H IP   S DL
Sbjct: 545  VESCTEENLRFDLDDERVIVLKYQNAKLATSRILKRHRIPSAISADL 591

 Score = 40.8 bits (94), Expect = 0.12
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 569 LDPVVKVFSVLTSPNYFIPWQMK 637
           LD VVKVF+V +SPNYF+PWQ K
Sbjct: 134 LDSVVKVFTVSSSPNYFLPWQNK 156

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,419,570,680
Number of extensions: 25886277
Number of successful extensions: 58381
Number of sequences better than 10.0: 64
Number of HSP's gapped: 58291
Number of HSP's successfully gapped: 76
Length of query: 479
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 347
Effective length of database: 623,955,076
Effective search space: 216512411372
Effective search space used: 216512411372
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.71  gvh: 0.30  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.58  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: nuclear

>> prediction for Contig-U12564-1 is mit
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0