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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12563-1
Contig ID Contig-U12563-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12563-1 (Contig-U12563-1Q) /CSM_Contig/Contig-U12563-1Q.Seq.d
TTTACCTATGTAGTTTCCCAATAAATGTTGGTGCTAATAGAACAATCCAA
GTTACACTTGCAAACACTGCCAGATATACTTATAAATATTCATATTCTCT
ACCATGGCTTTCCAAATTCTTAACTGCCAATAGTTCAGATACTCATGGTG
GTAATTGTAGTAGATTAAATTGTGTAACTCCTCCACAAAAACCACAATAT
TTAAATATTACAGGTTTTAATTTCAATCCATTCGAATTTATTTCACCATT
TTATGATTCAAATAAAACAATTGCATCTTGGAGAAATACTTCAAGAATTT
ATATAGGTACATTTGAATGTGGATCAGTTCAATGGATAAATTCAACCAAT
GTTAGTTGTATTATTCCACCTGGTATCGGTGCCAATCTAAAAGTTAATAT
TACTATTGGTGAACAAAAATCTGAAAATCAACTTTTATTCTCTTATAATA
AACCAAATATTACAAATAAAATTACAGTATCAACTGATGGTGCCACTGAT
ATTAAATATGTTGGTTTCAATTTCGTTCCCGCTGAATTAAAAGATTTTTA
TAATAAAGAAGAAAACAAAAATGTTTCANNNNNNNNN----------NNN
NNNNNNNTGCAGTATTTTTCTCAATTAATCATAATGATCGTATCTTTACA
ATTGATAATCAATTCAATGAAACTGTAACATGTATTGATAATAATAATTT
AAGTTTCAATTTCAACAAATCATTCACTTGTCAAATTAATGCTAATAATA
ATGGTATTAAATGTAATACAACCAACTTTGGAACTGAAATTAATTGTGGT
GTTCGTTCAAAATCTGCATCTTATAAATTCTCTATTCCAACGGTTTCAAA
AGTTTCAAGTTCATTAAAATGTGAATATGATGCCAATGAAAAATCAATGA
TAATCTATGGTCAAAATAGTCCAATCTATTGTAAAGATGGATTTAACGAA
TATACATACAATCATAATTCTACTATTTTCTGTTCAAATAGTGAAACCCA
ATCAAACATTGTTGAATGTGTTAGTGATGGCGGTGAACCTGAACATTCAT
TCATTAATAATGTAGAATGCTATAATTACAATAAATACTCATCATGCTCA
AAGAATTCATTGGTAAAAGCTTCAGATTATTCTGCATGCTTTGAAGTTCC
ACCATCCGAAGTAGAGCCAATTGTAATTACCAATCAAACTATTATCACAG
AATTCAACTCTGCATCAAGTAAACTTGCCTGTTATCCAAAAGAAGTAGAA
TTTAACTATGCATATAATAATACCCTCATTTGTTATAATGTTAAATCTGG
ATCCATCGATTATTCTGATTCTATCCTTCATCAAATACAATACAAAGTTA
AAGTTTGTATNAAAAAGAATAATATTTAAAACCAATAAATAAAATAATAT
CATTTAAAA
Gap gap included
Contig length 1399
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4566622
End point 4565339
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U12563
List of clone(s) 

est1=VHP872F,1,578
est2=VHP872Z,579,1381
Translated Amino Acid sequence 
YLCSFPINVGANRTIQVTLANTARYTYKYSYSLPWLSKFLTANSSDTHGGNCSRLNCVTP
PQKPQYLNITGFNFNPFEFISPFYDSNKTIASWRNTSRIYIGTFECGSVQWINSTNVSCI
IPPGIGANLKVNITIGEQKSENQLLFSYNKPNITNKITVSTDGATDIKYVGFNFVPAELK
DFYNKEENKNVSXXX---

---XXXAVFFSINHNDRIFTIDNQFNETVTCIDNNNLSFNFNKSFTCQINANNNGIKCNT
TNFGTEINCGVRSKSASYKFSIPTVSKVSSSLKCEYDANEKSMIIYGQNSPIYCKDGFNE
YTYNHNSTIFCSNSETQSNIVECVSDGGEPEHSFINNVECYNYNKYSSCSKNSLVKASDY
SACFEVPPSEVEPIVITNQTIITEFNSASSKLACYPKEVEFNYAYNNTLICYNVKSGSID
YSDSILHQIQYKVKVCXKKNNI*nq*ik*yhlk
Translated Amino Acid sequence (All Frames) 
Frame A:
ftyvvsq*mlvlieqsklhlqtlpdilinihilyhgfpns*lpivqilmvvivvd*iv*l
lhknhni*ilqvlisihsnlfhhfmiqikqlhlgeilqefi*vhlnvdqfng*iqpmlvv
lfhlvsvpi*klilllvnknlkinfysliinqilqiklqyqlmvplilnmlvsisfpln*
kifiikkktkmfxxx---

---xxxxqyfsqliimivslqliinsmkl*hvliiii*vsistnhslvklmliimvlnvi
qptlelklivvfvqnlhlinslfqrfqkfqvh*nvnmmpmknq**smvkivqsivkmdlt
nihtiiillfsvqivkpnqtllnvlvmavnlnihslim*naiitinthhaqrihw*klqi
ilhalkfhhpk*sql*lpikllsqnstlhqvnlpviqkk*nltmhiiipsfvimlnldps
iililsfikyntklkfvxkriifktnk*nnii*

Frame B:
lpm*fpnkcwc**nnpsytckhcqiyl*ififstmafqilncq*frysww*l**iklcns
stkttifkyyrf*fqsiriyftil*fk*nncilekyfknlyryi*mwissmdkfnqc*ly
ystwyrcqsks*yyyw*tki*kstfill**tkyyk*nysin*wch*y*icwfqfrsr*ik
rfl**rrkqkcfxxx---

---xxxcsifln*s**sylyn**siq*ncnmy****fkfqfqqiihlsn*c***wy*m*y
nqlwn*n*lwcsfkicil*ilysngfksfkfikm*i*cq*kindnlwsk*snll*rwi*r
iyiqs*fyyflfk**npikhc*mc**wr*t*tfih**crml*lq*ilimlkefigksfrl
fcml*sstirsrancnyqsnyyhriqlcik*tcllskrsri*lci**yphll*c*iwihr
lf*fypssntiqs*slyxke*ylkpinkiisfk

Frame C:
YLCSFPINVGANRTIQVTLANTARYTYKYSYSLPWLSKFLTANSSDTHGGNCSRLNCVTP
PQKPQYLNITGFNFNPFEFISPFYDSNKTIASWRNTSRIYIGTFECGSVQWINSTNVSCI
IPPGIGANLKVNITIGEQKSENQLLFSYNKPNITNKITVSTDGATDIKYVGFNFVPAELK
DFYNKEENKNVSXXX---

---XXXAVFFSINHNDRIFTIDNQFNETVTCIDNNNLSFNFNKSFTCQINANNNGIKCNT
TNFGTEINCGVRSKSASYKFSIPTVSKVSSSLKCEYDANEKSMIIYGQNSPIYCKDGFNE
YTYNHNSTIFCSNSETQSNIVECVSDGGEPEHSFINNVECYNYNKYSSCSKNSLVKASDY
SACFEVPPSEVEPIVITNQTIITEFNSASSKLACYPKEVEFNYAYNNTLICYNVKSGSID
YSDSILHQIQYKVKVCXKKNNI*nq*ik*yhlk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12563-1 (Contig-U12563-1Q)
/CSM_Contig/Contig-U12563-1Q.Seq.d
         (1409 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12563-1 (Contig-U12563-1Q) /CSM_Contig/Conti...  1463  0.0
Contig-U11906-1 (Contig-U11906-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U10149-1 (Contig-U10149-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U08029-1 (Contig-U08029-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12749-1 (Contig-U12749-1Q) /CSM_Contig/Conti...    36  0.100
Contig-U12065-1 (Contig-U12065-1Q) /CSM_Contig/Conti...    36  0.100
Contig-U11587-1 (Contig-U11587-1Q) /CSM_Contig/Conti...    36  0.100
Contig-U11179-1 (Contig-U11179-1Q) /CSM_Contig/Conti...    36  0.100
Contig-U10243-1 (Contig-U10243-1Q) /CSM_Contig/Conti...    36  0.100

>Contig-U12563-1 (Contig-U12563-1Q) /CSM_Contig/Contig-U12563-1Q.Seq.d
          Length = 1409

 Score = 1463 bits (738), Expect = 0.0
 Identities = 738/738 (100%)
 Strand = Plus / Plus

                                                                        
Query: 608  tgcagtatttttctcaattaatcataatgatcgtatctttacaattgataatcaattcaa 667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608  tgcagtatttttctcaattaatcataatgatcgtatctttacaattgataatcaattcaa 667

                                                                        
Query: 668  tgaaactgtaacatgtattgataataataatttaagtttcaatttcaacaaatcattcac 727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668  tgaaactgtaacatgtattgataataataatttaagtttcaatttcaacaaatcattcac 727

                                                                        
Query: 728  ttgtcaaattaatgctaataataatggtattaaatgtaatacaaccaactttggaactga 787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  ttgtcaaattaatgctaataataatggtattaaatgtaatacaaccaactttggaactga 787

                                                                        
Query: 788  aattaattgtggtgttcgttcaaaatctgcatcttataaattctctattccaacggtttc 847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  aattaattgtggtgttcgttcaaaatctgcatcttataaattctctattccaacggtttc 847

                                                                        
Query: 848  aaaagtttcaagttcattaaaatgtgaatatgatgccaatgaaaaatcaatgataatcta 907
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848  aaaagtttcaagttcattaaaatgtgaatatgatgccaatgaaaaatcaatgataatcta 907

                                                                        
Query: 908  tggtcaaaatagtccaatctattgtaaagatggatttaacgaatatacatacaatcataa 967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  tggtcaaaatagtccaatctattgtaaagatggatttaacgaatatacatacaatcataa 967

                                                                        
Query: 968  ttctactattttctgttcaaatagtgaaacccaatcaaacattgttgaatgtgttagtga 1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  ttctactattttctgttcaaatagtgaaacccaatcaaacattgttgaatgtgttagtga 1027

                                                                        
Query: 1028 tggcggtgaacctgaacattcattcattaataatgtagaatgctataattacaataaata 1087
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 tggcggtgaacctgaacattcattcattaataatgtagaatgctataattacaataaata 1087

                                                                        
Query: 1088 ctcatcatgctcaaagaattcattggtaaaagcttcagattattctgcatgctttgaagt 1147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 ctcatcatgctcaaagaattcattggtaaaagcttcagattattctgcatgctttgaagt 1147

                                                                        
Query: 1148 tccaccatccgaagtagagccaattgtaattaccaatcaaactattatcacagaattcaa 1207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 tccaccatccgaagtagagccaattgtaattaccaatcaaactattatcacagaattcaa 1207

                                                                        
Query: 1208 ctctgcatcaagtaaacttgcctgttatccaaaagaagtagaatttaactatgcatataa 1267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 ctctgcatcaagtaaacttgcctgttatccaaaagaagtagaatttaactatgcatataa 1267

                                                                        
Query: 1268 taataccctcatttgttataatgttaaatctggatccatcgattattctgattctatcct 1327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 taataccctcatttgttataatgttaaatctggatccatcgattattctgattctatcct 1327

                              
Query: 1328 tcatcaaatacaatacaa 1345
            ||||||||||||||||||
Sbjct: 1328 tcatcaaatacaatacaa 1345


 Score = 1146 bits (578), Expect = 0.0
 Identities = 578/578 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacctatgtagtttcccaataaatgttggtgctaatagaacaatccaagttacacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttacctatgtagtttcccaataaatgttggtgctaatagaacaatccaagttacacttg 60

                                                                       
Query: 61  caaacactgccagatatacttataaatattcatattctctaccatggctttccaaattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caaacactgccagatatacttataaatattcatattctctaccatggctttccaaattct 120

                                                                       
Query: 121 taactgccaatagttcagatactcatggtggtaattgtagtagattaaattgtgtaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taactgccaatagttcagatactcatggtggtaattgtagtagattaaattgtgtaactc 180

                                                                       
Query: 181 ctccacaaaaaccacaatatttaaatattacaggttttaatttcaatccattcgaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctccacaaaaaccacaatatttaaatattacaggttttaatttcaatccattcgaattta 240

                                                                       
Query: 241 tttcaccattttatgattcaaataaaacaattgcatcttggagaaatacttcaagaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttcaccattttatgattcaaataaaacaattgcatcttggagaaatacttcaagaattt 300

                                                                       
Query: 301 atataggtacatttgaatgtggatcagttcaatggataaattcaaccaatgttagttgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atataggtacatttgaatgtggatcagttcaatggataaattcaaccaatgttagttgta 360

                                                                       
Query: 361 ttattccacctggtatcggtgccaatctaaaagttaatattactattggtgaacaaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttattccacctggtatcggtgccaatctaaaagttaatattactattggtgaacaaaaat 420

                                                                       
Query: 421 ctgaaaatcaacttttattctcttataataaaccaaatattacaaataaaattacagtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgaaaatcaacttttattctcttataataaaccaaatattacaaataaaattacagtat 480

                                                                       
Query: 481 caactgatggtgccactgatattaaatatgttggtttcaatttcgttcccgctgaattaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caactgatggtgccactgatattaaatatgttggtttcaatttcgttcccgctgaattaa 540

                                                 
Query: 541 aagatttttataataaagaagaaaacaaaaatgtttca 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aagatttttataataaagaagaaaacaaaaatgtttca 578


>Contig-U11906-1 (Contig-U11906-1Q) /CSM_Contig/Contig-U11906-1Q.Seq.d
          Length = 2132

 Score = 38.2 bits (19), Expect = 0.025
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 456 aatattacaaataaaatta 474
           |||||||||||||||||||
Sbjct: 263 aatattacaaataaaatta 281


>Contig-U10149-1 (Contig-U10149-1Q) /CSM_Contig/Contig-U10149-1Q.Seq.d
          Length = 1131

 Score = 38.2 bits (19), Expect = 0.025
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 394 ttaatattactattggtga 412
           |||||||||||||||||||
Sbjct: 96  ttaatattactattggtga 78


 Score = 30.2 bits (15), Expect = 6.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 747 aataatggtattaaa 761
           |||||||||||||||
Sbjct: 182 aataatggtattaaa 196


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,956
Number of Sequences: 6905
Number of extensions: 30956
Number of successful extensions: 2734
Number of sequences better than 10.0: 298
length of query: 1409
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1393
effective length of database: 5,564,391
effective search space: 7751196663
effective search space used: 7751196663
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12563-1 (Contig-U12563-1Q) /CSM_Contig/Contig-U12563-1Q.Seq.d
         (1409 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446436) Dictyostelium discoideum cDNA clone:ddv62p18, 3' ...  1493   0.0    1
(BJ427533) Dictyostelium discoideum cDNA clone:ddv62p18, 5' ...  1146   0.0    1
(AB208043) Coturnix japonica cDNA clone:JQH43F.                    52   0.058  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   0.22   14
(AC184337) Strongylocentrotus purpuratus clone R3-41H3, WORK...    50   0.23   1
(AC177499) Strongylocentrotus purpuratus clone R3-1027N02, W...    50   0.23   1
(AC176399) Strongylocentrotus purpuratus clone R3-3044F09, W...    50   0.23   1
(AC172133) Bos taurus clone CH240-172G22, WORKING DRAFT SEQU...    40   0.31   5
(FE720975) SB05005A1C04.f1 Normalized subtracted Keck-Tagu L...    40   0.32   2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   0.35   13
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.38   16
(AL421748) T7 end of clone AY0AA014G11 of library AY0AA from...    38   0.49   2
(AC079616) Homo sapiens BAC clone RP11-605L5 from 4, complet...    44   0.53   8
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    34   0.73   6
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple...    42   0.76   19
(AC117407) Homo sapiens chromosome 3 clone RP11-30F1, *** SE...    46   0.84   10
(EB053483) StheSEQ12590 Sporotrichum thermophile pBluescript...    38   0.88   3
(CU862050) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.91   1
(ER015303) 1095521409517 Global-Ocean-Sampling_GS-33-01-01-1...    48   0.91   1
(AG954089) Drosophila sechellia DNA, clone: DSE1-007G03.R.fa...    48   0.91   1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    48   0.91   1
(AF136281) Clostridium beijerinckii biotin carboxylase (accC...    48   0.91   1
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    46   1.1    18
(AC184344) Strongylocentrotus purpuratus clone R3-3072M7, WO...    46   1.3    7
(AC046142) Homo sapiens 3 BAC RP11-550P14 (Roswell Park Canc...    46   1.7    7
(AC180229) Strongylocentrotus purpuratus clone R3-36L23, WOR...    32   1.8    2
(AC201234) Strongylocentrotus purpuratus clone R3-15J6, WORK...    32   1.9    2
(AC177011) Strongylocentrotus purpuratus clone R3-37G1, WORK...    32   1.9    2
(AC184309) Strongylocentrotus purpuratus clone R3-4012G22, W...    40   2.2    6
(CT628342) Danio rerio EST, clone ZF_mu_65e18 3'.                  34   2.3    3
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   2.6    11
(DT717974) rscag0_005728 Zhikong scallop Chlamys farreri cha...    36   2.8    2
(AX392733) Sequence 23 from Patent WO0212526.                      34   3.0    5
(AR707080) Sequence 23 from patent US 6933145.                     34   3.0    5
(CR936265) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.1    9
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    42   3.1    9
(CT025846) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   3.2    5
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   3.6    19
(Z76735) Human DNA sequence from clone RP1-246O8 on chromoso...    46   3.6    1
(AC018555) Homo sapiens chromosome 16 clone RP11-486F10, com...    46   3.6    1
(CU694669) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.6    1
(AC026019) Homo sapiens chromosome 3 clone RP11-329N5 map 3,...    46   3.6    1
(CU062440) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.6    1
(AC201210) Strongylocentrotus purpuratus clone R3-15D7, WORK...    46   3.6    1
(AC186361) Gallus gallus chromosome Z clone CH261-39G1, WORK...    46   3.6    1
(AC176408) Strongylocentrotus purpuratus clone R3-3044P19, W...    46   3.6    1
(AC168349) Strongylocentrotus purpuratus clone R3-56L8, WORK...    46   3.6    1
(AC023326) Homo sapiens chromosome X clone RP11-373D19 map X...    46   3.6    1
(AC013645) Homo sapiens clone RP11-17H6, WORKING DRAFT SEQUE...    46   3.6    1
(AC012105) Homo sapiens clone RP11-45G13, WORKING DRAFT SEQU...    46   3.6    1
(FH662539) CHO_OF5019xn02f1.ab1 CHO_OF5 Nicotiana tabacum ge...    46   3.6    1
(FH115856) CHO_OF3240xk14r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   3.6    1
(ET935400) CHO_OF465xi11r1.ab1 CHO_OF Nicotiana tabacum geno...    46   3.6    1
(ET935321) CHO_OF465xi11f4.ab1 CHO_OF Nicotiana tabacum geno...    46   3.6    1
(ET935243) CHO_OF465xi11f3.ab1 CHO_OF Nicotiana tabacum geno...    46   3.6    1
(ET799135) CHO_OF674xp06r1.ab1 CHO_OF Nicotiana tabacum geno...    46   3.6    1
(ET799073) CHO_OF674xp06f1.ab1 CHO_OF Nicotiana tabacum geno...    46   3.6    1
(ET092357) QM0AAA18AH11FM1 CCL1 Citrus clementina genomic cl...    46   3.6    1
(EK338164) 1095467050219 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.6    1
(EK097067) 1092962042918 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.6    1
(EJ919194) 1093018591820 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.6    1
(EJ918515) 1093018588556 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.6    1
(DU707143) Bst039670 lambda03 Boechera stricta genomic clone...    46   3.6    1
(DU678061) Bst010603 lambda03 Boechera stricta genomic clone...    46   3.6    1
(CL027383) CH216-25O15_RM1.1 CH216 Xenopus (Silurana) tropic...    46   3.6    1
(CF917668) Bflor498.000918 Amphioxus 5-6 hrs cDNA library (N...    46   3.6    1
(CF916917) Bflor498.000167 Amphioxus 5-6 hrs cDNA library (N...    46   3.6    1
(BI377669) BFLG3_001472 Amphioxus 5-6 hrs cDNA library (Name...    46   3.6    1
(BI377668) BFLG3_001471 Amphioxus 5-6 hrs cDNA library (Name...    46   3.6    1
(CP000300) Methanococcoides burtonii DSM 6242, complete genome.    46   3.6    1
(AC023127) Homo sapiens chromosome 3 clone RP11-333O9, WORKI...    34   3.7    7
(DE356409) Bombyx mori genomic DNA, BAC clone:BET_082_E15.         42   3.8    2
(BX000462) Zebrafish DNA sequence from clone DKEY-114F6 in l...    38   4.1    6
(AF335994) Lepidopsocid RS-2001 mitochondrion, complete genome.    30   4.3    6
(AZ688142) ENTHG51TR Entamoeba histolytica Sheared DNA Entam...    36   4.4    2
(AC149916) Strongylocentrotus purpuratus clone R3-14A1, WORK...    36   4.5    6
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    34   4.6    7
(AL008970) Plasmodium falciparum MAL3P4.                           36   5.3    8
(CR388207) Zebrafish DNA sequence from clone CH211-28E16 in ...    44   5.3    7
(AC177485) Strongylocentrotus purpuratus clone R3-61J07, WOR...    38   5.9    8
(AC079787) Homo sapiens chromosome 7 clone RP11-443F14, WORK...    34   6.4    7
(AJ634268) Kluyveromyces thermotolerans complete mitochondri...    38   6.4    3
(AC114814) Homo sapiens BAC clone RP11-1345D17 from 2, compl...    34   6.6    2
(CT757480) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   6.7    6
(AL645926) Zebrafish DNA sequence from clone RP71-1G24.            38   6.7    4
(AC179227) Strongylocentrotus purpuratus clone R3-41H19, WOR...    32   6.7    2
(AC015006) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    38   6.9    2
(CR936337) Zebrafish DNA sequence from clone RP71-78K5 in li...    36   6.9    6
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   7.2    18
(AC103734) Homo sapiens chromosome 11 clone RP11-433P22 map ...    34   7.3    11
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   7.4    12
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   7.8    18
(AC202380) Medicago truncatula clone mth2-160m23, complete s...    34   8.8    7
(BX649333) Zebrafish DNA sequence from clone DKEY-200F3 in l...    38   8.8    7
(CA996788) rg03b10.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    34   9.1    2
(BM901858) rc49e05.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    34   9.2    2
(AL110487) Caenorhabditis elegans YAC Y39E4B.                      36   9.3    6
(BJ440846) Dictyostelium discoideum cDNA clone:ddv44l24, 3' ...    38   9.3    2

>(BJ446436) Dictyostelium discoideum cDNA clone:ddv62p18, 3' end,
            single read.
          Length = 803

 Score = 1493 bits (753), Expect = 0.0
 Identities = 753/753 (100%)
 Strand = Plus / Minus


Query: 608  tgcagtatttttctcaattaatcataatgatcgtatctttacaattgataatcaattcaa 667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  tgcagtatttttctcaattaatcataatgatcgtatctttacaattgataatcaattcaa 744


Query: 668  tgaaactgtaacatgtattgataataataatttaagtttcaatttcaacaaatcattcac 727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  tgaaactgtaacatgtattgataataataatttaagtttcaatttcaacaaatcattcac 684


Query: 728  ttgtcaaattaatgctaataataatggtattaaatgtaatacaaccaactttggaactga 787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683  ttgtcaaattaatgctaataataatggtattaaatgtaatacaaccaactttggaactga 624


Query: 788  aattaattgtggtgttcgttcaaaatctgcatcttataaattctctattccaacggtttc 847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623  aattaattgtggtgttcgttcaaaatctgcatcttataaattctctattccaacggtttc 564


Query: 848  aaaagtttcaagttcattaaaatgtgaatatgatgccaatgaaaaatcaatgataatcta 907
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563  aaaagtttcaagttcattaaaatgtgaatatgatgccaatgaaaaatcaatgataatcta 504


Query: 908  tggtcaaaatagtccaatctattgtaaagatggatttaacgaatatacatacaatcataa 967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503  tggtcaaaatagtccaatctattgtaaagatggatttaacgaatatacatacaatcataa 444


Query: 968  ttctactattttctgttcaaatagtgaaacccaatcaaacattgttgaatgtgttagtga 1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443  ttctactattttctgttcaaatagtgaaacccaatcaaacattgttgaatgtgttagtga 384


Query: 1028 tggcggtgaacctgaacattcattcattaataatgtagaatgctataattacaataaata 1087
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383  tggcggtgaacctgaacattcattcattaataatgtagaatgctataattacaataaata 324


Query: 1088 ctcatcatgctcaaagaattcattggtaaaagcttcagattattctgcatgctttgaagt 1147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323  ctcatcatgctcaaagaattcattggtaaaagcttcagattattctgcatgctttgaagt 264


Query: 1148 tccaccatccgaagtagagccaattgtaattaccaatcaaactattatcacagaattcaa 1207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263  tccaccatccgaagtagagccaattgtaattaccaatcaaactattatcacagaattcaa 204


Query: 1208 ctctgcatcaagtaaacttgcctgttatccaaaagaagtagaatttaactatgcatataa 1267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203  ctctgcatcaagtaaacttgcctgttatccaaaagaagtagaatttaactatgcatataa 144


Query: 1268 taataccctcatttgttataatgttaaatctggatccatcgattattctgattctatcct 1327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143  taataccctcatttgttataatgttaaatctggatccatcgattattctgattctatcct 84


Query: 1328 tcatcaaatacaatacaaagttaaagtttgtat 1360
            |||||||||||||||||||||||||||||||||
Sbjct: 83   tcatcaaatacaatacaaagttaaagtttgtat 51

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,741,946,920
Number of extensions: 111429325
Number of successful extensions: 9438247
Number of sequences better than 10.0: 102
Length of query: 1409
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1385
Effective length of database: 97,308,875,965
Effective search space: 134772793211525
Effective search space used: 134772793211525
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12563-1 (Contig-U12563-1Q) /CSM_Contig/Contig-U12563-1Q.Seq.d
         (1409 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    51   1e-04
AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    45   0.008
CP001323_444(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    39   0.35
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    38   1.0
AC116984_31(AC116984|pid:none) Dictyostelium discoideum chromoso...    36   3.0
AM114193_2722(AM114193|pid:none) Uncultured methanogenic archaeo...    36   3.0
FM992688_585(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   5.1

>AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromosome
           2 map 1418423-1684967 strain AX4, complete sequence.
          Length = 934

 Score = 50.8 bits (120), Expect = 1e-04
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
 Frame = +3

Query: 201 LNITGFNFNPFEFISPFYDSNKTIASWRNTSRIYIGTFECGSVQWINST---NVSCIIPP 371
           + ITG   +P     P   +N TI        + IGT++C +V +IN      +  II
Sbjct: 289 ITITGSRLSP----PPSLLANSTIL-------VKIGTYDCKNVTFINQQLICRIDPIINN 337

Query: 372 GIGANLKVNITIGEQKSENQLLFSYNKPNITNKITVSTDGATDIKYVGFN 521
           G   NL + +TI    +EN+LLFS+++P ITN I +  +      + G N
Sbjct: 338 GDSVNLPIKLTINSISNENKLLFSFDQPIITNIIIIQGEVKLSGNFFGTN 387

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,154,769,223
Number of extensions: 45111846
Number of successful extensions: 89469
Number of sequences better than 10.0: 7
Number of HSP's gapped: 89413
Number of HSP's successfully gapped: 7
Length of query: 469
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 337
Effective length of database: 623,955,076
Effective search space: 210272860612
Effective search space used: 210272860612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.86  gvh: 0.51  alm: 0.43  top: 0.60  tms: 0.00  mit: 0.44  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U12563-1 is mit
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0