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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12557-1
Contig ID Contig-U12557-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Contig-U12557-1Q.Seq.d
CAATATCAATATCAACTTCACCACCAAACCAATCTTCAATGAAAATCGAC
GATAATAAAAAACCAATAAATGAAGGAGAGAAAATTATACAAATTGAAAA
TGAAATAAAAGAACAAACTTATTTGGAAACTATTAAAAATGTTGAAAACA
CAGTATCAAAAACATCAACCATAGCAACAACACCAACACCAACATCAACA
CCAACACCAACACCAAAATCAACACCAACACCAAAATCAACACCAACGAC
AACAACAACTACCACATCTGTAAATAATATAACACCAACCATGGTTTCGA
ATGAAAAACAAACCACTACAACAACCACTAAAACTAAAACATCACCACCA
CCACCAACACCACCACCAACATCACCAACATCAACAACATCACCAACGTC
ATCAACACCACCAACACCACCAACACCACCAACACCACCAACACTACCAA
CTAAAATAACAAAAAAATCTTCCACAAATAAAACATCAGAAAAAAAGAGG
AAACAAATAATCAAAAAGAACAACCATCATCATCATCATCATCGTCATCA
TCATTAAAAAAGAATATAGTTCAAAAACAGATTAAAAAAATTAAAGTAAA
AATTGAAGATATGGCAAACAAAAAATATCCANNNNNNNNN----------
NNNNNNNNNNATTTAGATGGTGCANCAACANCAACAACAACAACAACATC
AACAACAACAAATGGTTTAAAAACTACAAAAGAAGTTAATGATGAAATTT
TAAAAATTAAAAATGAAGAGAGCCAGAACCAAATAAGAGAAGAAAAAGAA
TTATTAGAAAAAAAAACCGTGAAAAATTAGAAAAGGAACAAAACTTTGAA
TATATTCATAAGAAAATCTATAATCAAATTAATGTGCCAATGCAAACAGA
GATTGCAAATCTAATGAAGGTATCACATGCAGGTTTACCTCATTTCCTAT
TGGCATCGACACCTGTTCAAGAGATTGTAACCACAAATTATGATCAATGT
TTTGAGATTGCTAGTAGATCTATTGGGAAGGAAATTTGTGTTTTACCATA
CCATTCGTTGAATGGTCGTAATAAAAGATGGATTTTAAAGCTACACGGTT
GTGTTTCAAATCCTAAAGATATCATTATAACTCGTGAAGATTACATTAGA
TATGGGGATAAGAACGAAGCATTGTCAGGCATGGTCCAAGCATTGTTAAT
TACAAAACATCTATTATTTGTTGGTTTCAGTTTAACTGATGACAATTTCT
ATCAAATTATGTCTGCTGTTAAACGTGCGACATCCACTGGTGAAGACGGC
AGTGTCAGATTAAAGAATACTTTTGGCACAGCCCTATTTCTTCAAAGAAA
TGATTTAATGAATGAAATTTGGGGTAAGGAATTAAATATTTTA
Gap gap included
Contig length 1383
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2172261
End point 2173627
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U12557
List of clone(s) 

est1=VHP250F,1,631
est2=VHP250Z,632,1365
Translated Amino Acid sequence 
nininfttkpifnenrr**ktnk*rrenytn*k*nkrtnlfgny*kc*khsikninhsnn
tntnintntntkintntkintndnnnyhick*yntnhgfe*ktnhynnh*n*nittttnt
ttnitninnitnvinttnttnttnttnttn*nnkkifhk*NIRKKEETNNQKEQPSSSSS
SSSSLKKNIVQKQIKKIKVKIEDMANKKYPXXX---

---XXXXLDGAXTXTTTTTSTTTNGLKTTKEVNDEILKIKNEESQNQIREEKELLEKKTV
KN*krnktlnifirksiiklmcqckqrlqi**ryhmqvylisywhrhlfkrl*pqiminv
lrllvdllgrkfvfyhtir*mvvikdgf*sytvvfqilkisl*lvkitldmgirtkhcqa
wskhc*lqniyyllvsv*lmtisiklclllnvrhplvktavsd*rillaqpyffkemi**
mkfgvrn*if
Translated Amino Acid sequence (All Frames) 
Frame A:
qyqyqlhhqtnlq*kstiiknq*mkerklyklkmk*knkliwkllkmlktqyqkhqp*qq
hqhqhqhqhqhqnqhqhqnqhqrqqqlphl*ii*hqpwfrmknkplqqplklkhhhhhqh
hhqhhqhqqhhqrhqhhqhhqhhqhhqhyqlk*qknlpqikhqkkrgnk*skrttiiiii
iviiikkeyssktd*kn*skn*rygkqkisxxx---

---XXXXLDGAXTXTTTTTSTTTNGLKTTKEVNDEILKIKNEESQNQIREEKELLEKKTV
KN*krnktlnifirksiiklmcqckqrlqi**ryhmqvylisywhrhlfkrl*pqiminv
lrllvdllgrkfvfyhtir*mvvikdgf*sytvvfqilkisl*lvkitldmgirtkhcqa
wskhc*lqniyyllvsv*lmtisiklclllnvrhplvktavsd*rillaqpyffkemi**
mkfgvrn*if

Frame B:
nininfttkpifnenrr**ktnk*rrenytn*k*nkrtnlfgny*kc*khsikninhsnn
tntnintntntkintntkintndnnnyhick*yntnhgfe*ktnhynnh*n*nittttnt
ttnitninnitnvinttnttnttnttnttn*nnkkifhk*NIRKKEETNNQKEQPSSSSS
SSSSLKKNIVQKQIKKIKVKIEDMANKKYPXXX---

---xxxi*mvxqxqqqqqhqqqqmv*klqkklmmkf*klkmkrartk*ekkkny*kkkp*
kirkgtkl*iys*enl*sn*cananrdcksnegitcrftsfpigidtcsrdcnhkl*smf
*dc**iywegnlcftipfvews**kmdfkatrlcfks*ryhyns*rlh*iwg*ersivrh
gpsivnyktsiicwfqfn**qflsnyvcc*tcdihw*rrqcqikeyfwhspisskk*fne
*nlg*gikyf

Frame C:
isistsppnqssmkiddnkkpinegekiiqieneikeqtyletiknventvsktstiatt
ptptstptptpkstptpkstptttttttsvnnitptmvsnekqttttttktktspppptp
pptsptsttsptsstpptpptpptpptlptkitkksstnktsekkrkqiikknnhhhhhh
rhhh*kri*fknrlkklk*klkiwqtknixxx---

---xxxfrwcxnxnnnnninnnkwfknykrs***nfkn*k*repepnkrrkriirkknre
klekeqnfeyihkkiynqinvpmqteianlmkvshaglphfllastpvqeivttnydqcf
eiasrsigkeicvlpyhslngrnkrwilklhgcvsnpkdiiitredyirygdknealsgm
vqallitkhllfvgfsltddnfyqimsavkratstgedgsvrlkntfgtalflqrndlmn
eiwgkelnil
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12557-1 (Contig-U12557-1Q)
/CSM_Contig/Contig-U12557-1Q.Seq.d
         (1393 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Conti...  1144  0.0
Contig-U06612-1 (Contig-U06612-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U06941-1 (Contig-U06941-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U06431-1 (Contig-U06431-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11711-1 (Contig-U11711-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U08943-1 (Contig-U08943-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U13102-1 (Contig-U13102-1Q) /CSM_Contig/Conti...    36  0.099
Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Conti...    36  0.099
Contig-U12144-1 (Contig-U12144-1Q) /CSM_Contig/Conti...    36  0.099
Contig-U11873-1 (Contig-U11873-1Q) /CSM_Contig/Conti...    36  0.099

>Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Contig-U12557-1Q.Seq.d
          Length = 1393

 Score = 1144 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Plus

                                                                        
Query: 817  ccgtgaaaaattagaaaaggaacaaaactttgaatatattcataagaaaatctataatca 876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  ccgtgaaaaattagaaaaggaacaaaactttgaatatattcataagaaaatctataatca 876

                                                                        
Query: 877  aattaatgtgccaatgcaaacagagattgcaaatctaatgaaggtatcacatgcaggttt 936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  aattaatgtgccaatgcaaacagagattgcaaatctaatgaaggtatcacatgcaggttt 936

                                                                        
Query: 937  acctcatttcctattggcatcgacacctgttcaagagattgtaaccacaaattatgatca 996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  acctcatttcctattggcatcgacacctgttcaagagattgtaaccacaaattatgatca 996

                                                                        
Query: 997  atgttttgagattgctagtagatctattgggaaggaaatttgtgttttaccataccattc 1056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  atgttttgagattgctagtagatctattgggaaggaaatttgtgttttaccataccattc 1056

                                                                        
Query: 1057 gttgaatggtcgtaataaaagatggattttaaagctacacggttgtgtttcaaatcctaa 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 gttgaatggtcgtaataaaagatggattttaaagctacacggttgtgtttcaaatcctaa 1116

                                                                        
Query: 1117 agatatcattataactcgtgaagattacattagatatggggataagaacgaagcattgtc 1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 agatatcattataactcgtgaagattacattagatatggggataagaacgaagcattgtc 1176

                                                                        
Query: 1177 aggcatggtccaagcattgttaattacaaaacatctattatttgttggtttcagtttaac 1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 aggcatggtccaagcattgttaattacaaaacatctattatttgttggtttcagtttaac 1236

                                                                        
Query: 1237 tgatgacaatttctatcaaattatgtctgctgttaaacgtgcgacatccactggtgaaga 1296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 tgatgacaatttctatcaaattatgtctgctgttaaacgtgcgacatccactggtgaaga 1296

                                                                        
Query: 1297 cggcagtgtcagattaaagaatacttttggcacagccctatttcttcaaagaaatgattt 1356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cggcagtgtcagattaaagaatacttttggcacagccctatttcttcaaagaaatgattt 1356

                                                 
Query: 1357 aatgaatgaaatttggggtaaggaattaaatatttta 1393
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1357 aatgaatgaaatttggggtaaggaattaaatatttta 1393


 Score =  317 bits (160), Expect = 2e-86
 Identities = 160/160 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatatcaatatcaacttcaccaccaaaccaatcttcaatgaaaatcgacgataataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caatatcaatatcaacttcaccaccaaaccaatcttcaatgaaaatcgacgataataaaa 60

                                                                       
Query: 61  aaccaataaatgaaggagagaaaattatacaaattgaaaatgaaataaaagaacaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaccaataaatgaaggagagaaaattatacaaattgaaaatgaaataaaagaacaaactt 120

                                                   
Query: 121 atttggaaactattaaaaatgttgaaaacacagtatcaaa 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttggaaactattaaaaatgttgaaaacacagtatcaaa 160


 Score =  170 bits (86), Expect = 3e-42
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                       
Query: 257 aactaccacatctgtaaataatataacaccaaccatggtttcgaatgaaaaacaaaccac 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aactaccacatctgtaaataatataacaccaaccatggtttcgaatgaaaaacaaaccac 316

                                     
Query: 317 tacaacaaccactaaaactaaaacat 342
           ||||||||||||||||||||||||||
Sbjct: 317 tacaacaaccactaaaactaaaacat 342


 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 712 atggtttaaaaactacaaaagaagttaatga 742
           |||||||||||||||||||||||||||||||
Sbjct: 712 atggtttaaaaactacaaaagaagttaatga 742


 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 603 ttgaagatatggcaaacaaaaaatatcca 631
           |||||||||||||||||||||||||||||
Sbjct: 603 ttgaagatatggcaaacaaaaaatatcca 631


 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 497 gaggaaacaaataatcaaaaagaacaac 524
           ||||||||||||||||||||||||||||
Sbjct: 497 gaggaaacaaataatcaaaaagaacaac 524


>Contig-U06612-1 (Contig-U06612-1Q) /CSM_Contig/Contig-U06612-1Q.Seq.d
          Length = 420

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 92  aattgaaaatgaaataaaagaacaa 116
           |||||||||| ||||||||||||||
Sbjct: 357 aattgaaaattaaataaaagaacaa 381


>Contig-U06941-1 (Contig-U06941-1Q) /CSM_Contig/Contig-U06941-1Q.Seq.d
          Length = 894

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 306 aaacaaaccactacaacaaccactaaaactaaaaca 341
           |||||||||||||| ||||| |||| ||||| ||||
Sbjct: 120 aaacaaaccactactacaactactacaactacaaca 155


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,718
Number of Sequences: 6905
Number of extensions: 13718
Number of successful extensions: 1472
Number of sequences better than 10.0: 192
length of query: 1393
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1377
effective length of database: 5,564,391
effective search space: 7662166407
effective search space used: 7662166407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Contig-U12557-1Q.Seq.d
         (1393 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446059) Dictyostelium discoideum cDNA clone:ddv61c14, 3' ...  1144   0.0    1
(BJ427165) Dictyostelium discoideum cDNA clone:ddv61c14, 5' ...    82   3e-25  2
(AE001427) Plasmodium falciparum 3D7 chromosome 2 section 64...    48   0.90   1
(AM459335) Vitis vinifera contig VV78X067217.2, whole genome...    46   3.6    1
(AM436045) Vitis vinifera contig VV78X243800.24, whole genom...    46   3.6    1
(AM424483) Vitis vinifera contig VV78X015462.14, whole genom...    46   3.6    1
(AC164352) Bos taurus clone CH240-138O24, *** SEQUENCING IN ...    46   3.6    1
(CB377513) CmaE1_37_N17_T3 Cowpea weevil larvae Lambda Zap E...    46   3.6    1
(EJ248942) 1095344014429 Global-Ocean-Sampling_GS-27-01-01-1...    40   4.2    2
(EJ291656) 1095386001135 Global-Ocean-Sampling_GS-27-01-01-1...    40   4.5    2
(EB334809) CNSN01-F-141786-501 Normalized CNS library (juven...    40   5.5    2
(EB257976) CNSN01-C-008139-501 Normalized CNS library (juven...    40   5.9    2
(EB322004) CNSN01-F-088570-501 Normalized CNS library (juven...    40   8.1    2
(EB307394) CNSN01-F-068432-501 Normalized CNS library (juven...    40   8.3    2
(W78066) zd72e05.r1 Soares_fetal_heart_NbHH19W Homo sapiens ...    42   8.4    2
(EB309103) CNSN01-F-071030-501 Normalized CNS library (juven...    40   8.4    2
(EB256094) CNSN01-C-001923-503 Normalized CNS library (juven...    40   8.6    2
(EB257526) CNSN01-C-007614-501 Normalized CNS library (juven...    40   8.7    2
(EB334840) CNSN01-F-141831-501 Normalized CNS library (juven...    40   8.8    2
(FE922670) DCAA-aaa76e11.g1 D.africanus_EST Ditylenchus afri...    32   9.3    2
(EB281389) CNSN01-F-000337-501 Normalized CNS library (juven...    40   9.4    2
(FE920531) DCAA-aaa05g12.g1 D.africanus_EST Ditylenchus afri...    32   9.6    2
(FE921877) DCAA-aaa05g12.b1 D.africanus_EST Ditylenchus afri...    32   9.6    2
(EB300520) CNSN01-F-057895-501 Normalized CNS library (juven...    40   9.7    2
(EB282820) CNSN01-F-002246-501 Normalized CNS library (juven...    40   9.9    2
(AC180274) Strongylocentrotus purpuratus clone R3-3123O08, W...    40   10.0   3

>(BJ446059) Dictyostelium discoideum cDNA clone:ddv61c14, 3' end,
            single read.
          Length = 734

 Score = 1144 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Minus


Query: 817  ccgtgaaaaattagaaaaggaacaaaactttgaatatattcataagaaaatctataatca 876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578  ccgtgaaaaattagaaaaggaacaaaactttgaatatattcataagaaaatctataatca 519


Query: 877  aattaatgtgccaatgcaaacagagattgcaaatctaatgaaggtatcacatgcaggttt 936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  aattaatgtgccaatgcaaacagagattgcaaatctaatgaaggtatcacatgcaggttt 459


Query: 937  acctcatttcctattggcatcgacacctgttcaagagattgtaaccacaaattatgatca 996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458  acctcatttcctattggcatcgacacctgttcaagagattgtaaccacaaattatgatca 399


Query: 997  atgttttgagattgctagtagatctattgggaaggaaatttgtgttttaccataccattc 1056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398  atgttttgagattgctagtagatctattgggaaggaaatttgtgttttaccataccattc 339


Query: 1057 gttgaatggtcgtaataaaagatggattttaaagctacacggttgtgtttcaaatcctaa 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338  gttgaatggtcgtaataaaagatggattttaaagctacacggttgtgtttcaaatcctaa 279


Query: 1117 agatatcattataactcgtgaagattacattagatatggggataagaacgaagcattgtc 1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278  agatatcattataactcgtgaagattacattagatatggggataagaacgaagcattgtc 219


Query: 1177 aggcatggtccaagcattgttaattacaaaacatctattatttgttggtttcagtttaac 1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218  aggcatggtccaagcattgttaattacaaaacatctattatttgttggtttcagtttaac 159


Query: 1237 tgatgacaatttctatcaaattatgtctgctgttaaacgtgcgacatccactggtgaaga 1296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158  tgatgacaatttctatcaaattatgtctgctgttaaacgtgcgacatccactggtgaaga 99


Query: 1297 cggcagtgtcagattaaagaatacttttggcacagccctatttcttcaaagaaatgattt 1356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98   cggcagtgtcagattaaagaatacttttggcacagccctatttcttcaaagaaatgattt 39


Query: 1357 aatgaatgaaatttggggtaaggaattaaatatttta 1393
            |||||||||||||||||||||||||||||||||||||
Sbjct: 38   aatgaatgaaatttggggtaaggaattaaatatttta 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 775,381,255
Number of extensions: 45456147
Number of successful extensions: 3482172
Number of sequences better than 10.0: 26
Length of query: 1393
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1369
Effective length of database: 97,308,875,965
Effective search space: 133215851196085
Effective search space used: 133215851196085
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Contig-U12557-1Q.Seq.d
         (1393 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000480_1233(CP000480|pid:none) Mycobacterium smegmatis str. MC...   118   6e-25
CP000854_3336(CP000854|pid:none) Mycobacterium marinum M, comple...   110   1e-22
CP000325_2231(CP000325|pid:none) Mycobacterium ulcerans Agy99, c...   110   1e-22
CP000580_851(CP000580|pid:none) Mycobacterium sp. JLS, complete ...   107   8e-22
CP000518_861(CP000518|pid:none) Mycobacterium sp. KMS, complete ...   107   1e-21
AP008957_459(AP008957|pid:none) Rhodococcus erythropolis PR4 DNA...    97   1e-18
CP000721_2768(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    76   3e-12
CP000269_2731(CP000269|pid:none) Janthinobacterium sp. Marseille...    71   1e-10
AM286415_941(AM286415|pid:none) Yersinia enterocolitica subsp. e...    69   5e-10
CP000473_2489(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    67   1e-09
AE004969_1084(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, ...    64   1e-08
CP000943_6240(CP000943|pid:none) Methylobacterium sp. 4-46, comp...    64   1e-08
CP001299_242(CP001299|pid:none) Methylobacterium chloromethanicu...    64   2e-08
CP001026_1317(CP001026|pid:none) Burkholderia ambifaria MC40-6 c...    62   4e-08
BX640438_150(BX640438|pid:none) Bordetella bronchiseptica strain...    62   4e-08
CP000109_372(CP000109|pid:none) Thiomicrospira crunogena XCL-2, ...    62   5e-08
CP000698_546(CP000698|pid:none) Geobacter uraniireducens Rf4, co...    62   5e-08
AJ276891_1(AJ276891|pid:none) Pediococcus pentosaceus phenolic a...    62   7e-08
CP000378_2635(CP000378|pid:none) Burkholderia cenocepacia AU 105...    61   1e-07
CP001015_1630(CP001015|pid:none) Streptococcus pneumoniae G54, c...    61   1e-07
AY596297_2034(AY596297|pid:none) Haloarcula marismortui ATCC 430...    60   2e-07
CP000967_3345(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P...    60   2e-07
CP000569_1163(CP000569|pid:none) Actinobacillus pleuropneumoniae...    60   2e-07
BX950851_407(BX950851|pid:none) Erwinia carotovora subsp. atrose...    59   3e-07
CP000557_1599(CP000557|pid:none) Geobacillus thermodenitrificans...    59   4e-07
CP000001_3368(CP000001|pid:none) Bacillus cereus E33L, complete ...    59   6e-07
CU468135_3235(CU468135|pid:none) Erwinia tasmaniensis strain ET1...    59   6e-07
CP001638_1496(CP001638|pid:none) Geobacillus sp. WCH70, complete...    58   7e-07
AM114193_2643(AM114193|pid:none) Uncultured methanogenic archaeo...    57   2e-06
CP000949_3339(CP000949|pid:none) Pseudomonas putida W619, comple...    55   8e-06
AE009948_1943(AE009948|pid:none) Streptococcus agalactiae 2603V/...    54   1e-05
EF530733_1(EF530733|pid:none) Uncultured bacterium Bio8 BpiB05 (...    54   1e-05
CP000728_784(CP000728|pid:none) Clostridium botulinum F str. Lan...    54   2e-05
CP000939_764(CP000939|pid:none) Clostridium botulinum B1 str. Ok...    53   2e-05
AF176025_30(AF176025|pid:none) Lactococcus phage BK5-T, complete...    53   3e-05
CP000580_2238(CP000580|pid:none) Mycobacterium sp. JLS, complete...    52   5e-05
CP000302_920(CP000302|pid:none) Shewanella denitrificans OS217, ...    51   1e-04
AP006725_2852(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204...    51   1e-04
CP001299_239(CP001299|pid:none) Methylobacterium chloromethanicu...    50   1e-04
CP000753_2526(CP000753|pid:none) Shewanella baltica OS185, compl...    49   3e-04
AE016877_1145(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    49   4e-04
CP000301_140(CP000301|pid:none) Rhodopseudomonas palustris BisB1...    49   6e-04
CP000267_1047(CP000267|pid:none) Rhodoferax ferrireducens T118, ...    48   0.001
CP001157_1651(CP001157|pid:none) Azotobacter vinelandii DJ, comp...    47   0.002
CP001114_707(CP001114|pid:none) Deinococcus deserti VCD115, comp...    47   0.002
CP001581_780(CP001581|pid:none) Clostridium botulinum A2 str. Ky...    46   0.003
AE016825_1059(AE016825|pid:none) Chromobacterium violaceum ATCC ...    46   0.004
AM286690_1876(AM286690|pid:none) Alcanivorax borkumensis SK2, co...    46   0.004
CP001349_1535(CP001349|pid:none) Methylobacterium nodulans ORS 2...    44   0.014
BX572595_188(BX572595|pid:none) Rhodopseudomonas palustris CGA00...    43   0.024
CP001219_660(CP001219|pid:none) Acidithiobacillus ferrooxidans A...    42   0.053
CP001132_824(CP001132|pid:none) Acidithiobacillus ferrooxidans A...    42   0.053
CP001322_1729(CP001322|pid:none) Desulfatibacillum alkenivorans ...    42   0.053
CP000390_2462(CP000390|pid:none) Mesorhizobium sp. BNC1, complet...    42   0.053
CP001077_148(CP001077|pid:none) Rhizobium etli CIAT 652 plasmid ...    41   0.091
AE017226_263(AE017226|pid:none) Treponema denticola ATCC 35405, ...    40   0.16
AM746676_8882(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    40   0.16
CP001176_2814(CP001176|pid:none) Bacillus cereus B4264, complete...    40   0.20
CP000269_1031(CP000269|pid:none) Janthinobacterium sp. Marseille...    40   0.20
CP000304_1554(CP000304|pid:none) Pseudomonas stutzeri A1501, com...    40   0.20
CP001186_2886(CP001186|pid:none) Bacillus cereus G9842, complete...    40   0.20
CT573071_1352(CT573071|pid:none) Kuenenia stuttgartiensis genome...    40   0.26
AL591985_914(AL591985|pid:none) Sinorhizobium meliloti 1021 plas...    40   0.26
CP001186_1842(CP001186|pid:none) Bacillus cereus G9842, complete...    39   0.35
AM746676_1568(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    39   0.35
CP000001_2646(CP000001|pid:none) Bacillus cereus E33L, complete ...    38   0.77
AE017194_2974(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    38   0.77
CP001407_2866(CP001407|pid:none) Bacillus cereus 03BB102, comple...    38   0.77
AE017355_2663(AE017355|pid:none) Bacillus thuringiensis serovar ...    38   0.77
AE016879_2723(AE016879|pid:none) Bacillus anthracis str. Ames, c...    38   0.77
CP000485_2507(CP000485|pid:none) Bacillus thuringiensis str. Al ...    38   0.77
CP000227_2687(CP000227|pid:none) Bacillus cereus Q1, complete ge...    38   1.0
CP001177_2832(CP001177|pid:none) Bacillus cereus AH187, complete...    38   1.0
BC076914_1(BC076914|pid:none) Xenopus tropicalis MGC89091 protei...    38   1.0
AM746676_1281(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    38   1.0
CP000764_1912(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    37   1.7
CP000739_1133(CP000739|pid:none) Sinorhizobium medicae WSM419 pl...    37   2.2
CP000509_2441(CP000509|pid:none) Nocardioides sp. JS614, complet...    37   2.2
(Q4R836) Protein FAM118B.  &AB168624_1(AB168624|pid:none)              36   2.9
CP000891_1548(CP000891|pid:none) Shewanella baltica OS195, compl...    36   2.9
AK024756_1(AK024756|pid:none) Homo sapiens cDNA: FLJ21103 fis, c...    36   2.9
(Q4QQT2) RecName: Full=Protein FAM118B;  &BC098017_1(BC098017|pi...    36   2.9
(Q8C569) RecName: Full=Protein FAM118B;  &AK079397_1(AK079397|pi...    36   2.9
CP000113_4019(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    36   2.9
(Q9BPY3) RecName: Full=Protein FAM118B;  &AX405722_1(AX405722|pi...    36   2.9
CP000478_1079(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    36   2.9
(Q5E977) RecName: Full=Protein FAM118B;  &BC118445_1(BC118445|pi...    36   2.9
CP000635_20(CP000635|pid:none) Agrobacterium vitis S4 plasmid pA...    36   3.8
CP001281_602(CP001281|pid:none) Thauera sp. MZ1T, complete genome.     36   3.8
AK168168_1(AK168168|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...    35   5.0
(Q5URA3) RecName: Full=Uncharacterized protein L145;  &AY653733_...    35   5.0
CP001186_2293(CP001186|pid:none) Bacillus cereus G9842, complete...    33   5.8
CP000904_163(CP000904|pid:none) Bacillus weihenstephanensis KBAB...    33   5.8
AE016877_2305(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    35   6.5
(B0R7Q2) RecName: Full=Putative ski2-type helicase;          EC=...    35   8.5

>CP000480_1233(CP000480|pid:none) Mycobacterium smegmatis str. MC2
            155, complete genome.
          Length = 512

 Score =  118 bits (295), Expect = 6e-25
 Identities = 63/153 (41%), Positives = 94/153 (61%)
 Frame = +2

Query: 935  LPHFLLASTPVQEIVTTNYDQCFEIASRSIGKEICVLPYHSLNGRNKRWILKLHGCVSNP 1114
            L H LLAS P  E VTTNYD  FE A ++ G+++ VLP +        W+LKLHG V  P
Sbjct: 284  LTHGLLASLPSSEAVTTNYDNLFETAYKTRGRDVAVLPENPRTTEG-HWLLKLHGSVDQP 342

Query: 1115 KDIIITREDYIRYGDKNEALSGMVQALLITKHLLFVGFSLTDDNFYQIMSAVKRATSTGE 1294
            + II+TR DY+    +  AL G+VQ LL+ + ++FVG+SL+D++F++++  V+ A    E
Sbjct: 343  EKIILTRSDYLSMPRQYGALMGLVQGLLLMRRMVFVGYSLSDEDFHELIDEVRAARGDSE 402

Query: 1295 DGSVRLKNTFGTALFLQRNDLMNEIWGKELNIL 1393
             G  R     G AL L  + L  ++W K+L+I+
Sbjct: 403  TGLGR-----GVALTLYADPLDRQLWEKDLDIV 430

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,377,282,215
Number of extensions: 26897026
Number of successful extensions: 44717
Number of sequences better than 10.0: 95
Number of HSP's gapped: 44652
Number of HSP's successfully gapped: 97
Length of query: 464
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 332
Effective length of database: 623,955,076
Effective search space: 207153085232
Effective search space used: 207153085232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.40  gvh: 0.26  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial

>> prediction for Contig-U12557-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0