Contig-U12539-1
Contig ID Contig-U12539-1
Contig update 2002.12.18
Contig sequence
>Contig-U12539-1 (Contig-U12539-1Q) /CSM_Contig/Contig-U12539-1Q.Seq.d
ATTTTTATTTTTTTTTATAAATTTTGTCAAAATAATAATAATAATAACAA
AAATGTTAAAAAAATCATTATTTATTTATTTATTTATTTTTTTTAATTTT
ATAATTAAAATAACGACAGCAGCAACAAGTGTAACATATTATGTTAGTGT
TAATAATGGTAATGATAATATACCATGTGGAGAGAGTTTAGAAAAGTCAT
GTCAATCAATTCAATATGTATTTAATCAATATAATTCAACCTATTTAAAT
AGTCAAGATATTATTGAAGTTATGATATTATTAGATGATGGTGAATATAT
TGGTGAAAATAATGTGAATTTTAATATTTACAATATGACAATCACTATTC
AACCAATTAATAATTCAAAAACACCGTCACCAGTAACATTCAATGGTATT
AACAGTGCCGGTGATAGAGTTTTTAATATCACTGAACCATATTTAATTAA
AACCAATGAAACAACGATTCAATATGGCATAAATTCAACATCATTAACAT
TAAATAATTTAAATTTCATTAATTTCAATCCAACTATTGGTAATGGTAAT
GGTACCATTGGAAATGGTGCAATCATATTCATTGATATATTCAACTCATC
ATTATCTTTATCAATTAATAAATGTAATTTTAATAATAATCAAG------
----NNNNNNNNNNTGCTACTGGCGTATCAAGTTATTTACTTGTTGCAAA
TTCAAAATTCATTGATAATAAATCAAGTGGTGCTGGTGGCGCTATTGCAA
CTCAAGGTAGTGTTTACACGAGTTTGAACAATTGTGAATTCATTTCAAAT
TCTGCAAATGCCGGTGGTTCATTATCTTTTGAATATTCAAATCAAATTCA
TTTAAGAAATTGTACAATCAGTGGAAATGTTGGTGTTGGTCAAGGTGGTG
CAATCTATTCATCCTATTCAACGATTTCAATGGATGATACTAAAATTAGT
GCCAATCAAGCTTACCAAGGTGGTGCTGTCTATTGCTCCGCTTCAACTTT
AAATATTACCAGTTCAAATATCCCATTGAATGGTAATACCGATCTTGGCA
ATGGTACAGACTCTTATGAATGGAAAGGTGAGGATGGTATAAAAGTCAAT
GATTATGGTATTTATTGTGCTCTAACTCCAACCTATACCTATTGTACTGT
CAATGGTGATACACCTTATAGTAAACTTTGCGGTGAATCCGATGTCACTG
AACTTTCAGGTTTAACAGCTGGTCAAATCGCTGGTATTGTCATTGGTTGT
ACTATTGGTGCTGGTATTTTAGCTTTTGGTTTAGCCTGGGTTATCTCAAA
AACAACTATTAAAGAACATTTCATTAGACTAAGAAGCTCTTCAACTTCNA
ATACATCTTATTCACTAAATTATTCATTAAA

Gap gap included
Contig length 1371
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 665014
End point 666376
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U12539
List of clone(s)

est1=VHM595F,1,644
est2=VFM623F,9,642
est3=VHM595Z,645,1362
Translated Amino Acid sequence
FLFFFINFVKIIIIITKMLKKSLFIYLFIFFNFIIKITTAATSVTYYVSVNNGNDNIPCG
ESLEKSCQSIQYVFNQYNSTYLNSQDIIEVMILLDDGEYIGENNVNFNIYNMTITIQPIN
NSKTPSPVTFNGINSAGDRVFNITEPYLIKTNETTIQYGINSTSLTLNNLNFINFNPTIG
NGNGTIGNGAIIFIDIFNSSLSLSINKCNFNNNQ---

---XXXATGVSSYLLVANSKFIDNKSSGAGGAIATQGSVYTSLNNCEFISNSANAGGSLS
FEYSNQIHLRNCTISGNVGVGQGGAIYSSYSTISMDDTKISANQAYQGGAVYCSASTLNI
TSSNIPLNGNTDLGNGTDSYEWKGEDGIKVNDYGIYCALTPTYTYCTVNGDTPYSKLCGE
SDVTELSGLTAGQIAGIVIGCTIGAGILAFGLAWVISKTTIKEHFIRLRSSSTSNTSYSL
NYSL


Translated Amino Acid sequence (All Frames)
Frame A:
ififfykfcqnnnnnnknvkkiiiylfiyff*fyn*nndssnkcnilc*c**w***ytmw
refrkvmsinsici*si*fnlfk*sryy*sydiir*w*iyw*k*cef*ylqydnhystn*
*fkntvtsniqwy*qcr**sf*yh*tifn*nq*nndsiwhkfniinik*fkfh*fqsnyw
*w*wyhwkwcnhih*yiqliiifin**m*f***s---

---xxxxllayqviyllqiqnsliinqvvlvallqlkvvftrv*tivnsfqilqmpvvhy
llniqikfi*eivqsvemlvlvkvvqsihpiqrfqwmilklvpikltkvvlsiaplql*i
lpvqish*mvipilamvqtlmngkvrmv*ksmimvfivl*lqpipivlsmvihlivnfav
npmslnfqv*qlvkslvlslvvllvlvf*llv*pglsqkqllknisld*ealqlxihlih
*iih*

Frame B:
FLFFFINFVKIIIIITKMLKKSLFIYLFIFFNFIIKITTAATSVTYYVSVNNGNDNIPCG
ESLEKSCQSIQYVFNQYNSTYLNSQDIIEVMILLDDGEYIGENNVNFNIYNMTITIQPIN
NSKTPSPVTFNGINSAGDRVFNITEPYLIKTNETTIQYGINSTSLTLNNLNFINFNPTIG
NGNGTIGNGAIIFIDIFNSSLSLSINKCNFNNNQ---

---xxxcywriklftcckfkih***ikwcwwrycnsr*clhefeql*ihfkfckcrwfii
f*ifksnsfkklynqwkcwcwsrwcnlfilfndfng*y*n*cqsslprwcclllrfnfky
yqfkypiew*yrswqwyrll*mer*gwyksq*lwyllcsnsnlyllycqw*ytl**tlr*
irch*tfrfnswsnrwychwlyywcwyfsfwfslgylknny*rtfh*tkklfnfxyilft
klfik

Frame C:
fyffl*ilsk*****qkc*knhylfiylfflil*lk*rqqqqv*himlvlimvmiiyhve
rv*kshvnqfnmyliniiqpi*ivkillkl*yy*mmvnilvkim*ilifti*qslfnqli
iqkhrhq*hsmvltvpvieflislnhi*lkpmkqrfnma*iqhh*h*ii*islisiqllv
mvmvplemvqsysliysthhylyqlinviliiik---

---XXXATGVSSYLLVANSKFIDNKSSGAGGAIATQGSVYTSLNNCEFISNSANAGGSLS
FEYSNQIHLRNCTISGNVGVGQGGAIYSSYSTISMDDTKISANQAYQGGAVYCSASTLNI
TSSNIPLNGNTDLGNGTDSYEWKGEDGIKVNDYGIYCALTPTYTYCTVNGDTPYSKLCGE
SDVTELSGLTAGQIAGIVIGCTIGAGILAFGLAWVISKTTIKEHFIRLRSSSTSNTSYSL
NYSL

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12539-1 (Contig-U12539-1Q)
/CSM_Contig/Contig-U12539-1Q.Seq.d
(1381 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12539-1 (Contig-U12539-1Q) /CSM_Contig/Conti... 1415 0.0
Contig-U11392-1 (Contig-U11392-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U06619-1 (Contig-U06619-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U14443-1 (Contig-U14443-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U14303-1 (Contig-U14303-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U05557-1 (Contig-U05557-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U00469-1 (Contig-U00469-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U14860-1 (Contig-U14860-1Q) /CSM_Contig/Conti... 36 0.098

>Contig-U12539-1 (Contig-U12539-1Q) /CSM_Contig/Contig-U12539-1Q.Seq.d
Length = 1381

Score = 1415 bits (714), Expect = 0.0
Identities = 717/717 (100%)
Strand = Plus / Plus


Query: 665 tgctactggcgtatcaagttatttacttgttgcaaattcaaaattcattgataataaatc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgctactggcgtatcaagttatttacttgttgcaaattcaaaattcattgataataaatc 724


Query: 725 aagtggtgctggtggcgctattgcaactcaaggtagtgtttacacgagtttgaacaattg 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aagtggtgctggtggcgctattgcaactcaaggtagtgtttacacgagtttgaacaattg 784


Query: 785 tgaattcatttcaaattctgcaaatgccggtggttcattatcttttgaatattcaaatca 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tgaattcatttcaaattctgcaaatgccggtggttcattatcttttgaatattcaaatca 844


Query: 845 aattcatttaagaaattgtacaatcagtggaaatgttggtgttggtcaaggtggtgcaat 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 aattcatttaagaaattgtacaatcagtggaaatgttggtgttggtcaaggtggtgcaat 904


Query: 905 ctattcatcctattcaacgatttcaatggatgatactaaaattagtgccaatcaagctta 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ctattcatcctattcaacgatttcaatggatgatactaaaattagtgccaatcaagctta 964


Query: 965 ccaaggtggtgctgtctattgctccgcttcaactttaaatattaccagttcaaatatccc 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 ccaaggtggtgctgtctattgctccgcttcaactttaaatattaccagttcaaatatccc 1024


Query: 1025 attgaatggtaataccgatcttggcaatggtacagactcttatgaatggaaaggtgagga 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 attgaatggtaataccgatcttggcaatggtacagactcttatgaatggaaaggtgagga 1084


Query: 1085 tggtataaaagtcaatgattatggtatttattgtgctctaactccaacctatacctattg 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 tggtataaaagtcaatgattatggtatttattgtgctctaactccaacctatacctattg 1144


Query: 1145 tactgtcaatggtgatacaccttatagtaaactttgcggtgaatccgatgtcactgaact 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 tactgtcaatggtgatacaccttatagtaaactttgcggtgaatccgatgtcactgaact 1204


Query: 1205 ttcaggtttaacagctggtcaaatcgctggtattgtcattggttgtactattggtgctgg 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 ttcaggtttaacagctggtcaaatcgctggtattgtcattggttgtactattggtgctgg 1264


Query: 1265 tattttagcttttggtttagcctgggttatctcaaaaacaactattaaagaacatttcat 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 tattttagcttttggtttagcctgggttatctcaaaaacaactattaaagaacatttcat 1324


Query: 1325 tagactaagaagctcttcaacttcnaatacatcttattcactaaattattcattaaa 1381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 tagactaagaagctcttcaacttcnaatacatcttattcactaaattattcattaaa 1381


Score = 1090 bits (550), Expect = 0.0
Identities = 550/550 (100%)
Strand = Plus / Plus


Query: 95 aattttataattaaaataacgacagcagcaacaagtgtaacatattatgttagtgttaat 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aattttataattaaaataacgacagcagcaacaagtgtaacatattatgttagtgttaat 154


Query: 155 aatggtaatgataatataccatgtggagagagtttagaaaagtcatgtcaatcaattcaa 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aatggtaatgataatataccatgtggagagagtttagaaaagtcatgtcaatcaattcaa 214


Query: 215 tatgtatttaatcaatataattcaacctatttaaatagtcaagatattattgaagttatg 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tatgtatttaatcaatataattcaacctatttaaatagtcaagatattattgaagttatg 274


Query: 275 atattattagatgatggtgaatatattggtgaaaataatgtgaattttaatatttacaat 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atattattagatgatggtgaatatattggtgaaaataatgtgaattttaatatttacaat 334


Query: 335 atgacaatcactattcaaccaattaataattcaaaaacaccgtcaccagtaacattcaat 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atgacaatcactattcaaccaattaataattcaaaaacaccgtcaccagtaacattcaat 394


Query: 395 ggtattaacagtgccggtgatagagtttttaatatcactgaaccatatttaattaaaacc 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggtattaacagtgccggtgatagagtttttaatatcactgaaccatatttaattaaaacc 454


Query: 455 aatgaaacaacgattcaatatggcataaattcaacatcattaacattaaataatttaaat 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatgaaacaacgattcaatatggcataaattcaacatcattaacattaaataatttaaat 514


Query: 515 ttcattaatttcaatccaactattggtaatggtaatggtaccattggaaatggtgcaatc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttcattaatttcaatccaactattggtaatggtaatggtaccattggaaatggtgcaatc 574


Query: 575 atattcattgatatattcaactcatcattatctttatcaattaataaatgtaattttaat 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atattcattgatatattcaactcatcattatctttatcaattaataaatgtaattttaat 634


Query: 635 aataatcaag 644
||||||||||
Sbjct: 635 aataatcaag 644


>Contig-U11392-1 (Contig-U11392-1Q) /CSM_Contig/Contig-U11392-1Q.Seq.d
Length = 2253

Score = 42.1 bits (21), Expect = 0.002
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 535 tattggtaatggtaatggtaccatt 559
||||||||||| |||||||||||||
Sbjct: 112 tattggtaatgataatggtaccatt 136


>Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Contig-U12799-1Q.Seq.d
Length = 2583

Score = 40.1 bits (20), Expect = 0.006
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 148 tgttaataatggtaatgata 167
||||||||||||||||||||
Sbjct: 1370 tgttaataatggtaatgata 1389


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,851
Number of Sequences: 6905
Number of extensions: 24851
Number of successful extensions: 3293
Number of sequences better than 10.0: 405
length of query: 1381
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1365
effective length of database: 5,564,391
effective search space: 7595393715
effective search space used: 7595393715
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA
Query= Contig-U12539-1 (Contig-U12539-1Q) /CSM_Contig/Contig-U12539-1Q.Seq.d
(1381 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ444610) Dictyostelium discoideum cDNA clone:ddv56m23, 3' ... 1415 0.0 1
(BJ416676) Dictyostelium discoideum cDNA clone:ddv26m06, 5' ... 1070 0.0 1
(BJ425813) Dictyostelium discoideum cDNA clone:ddv56m23, 5' ... 1066 0.0 1
(AM559151) Paracentrotus lividus EST, clone MPMGp1172O1467Q,... 54 0.014 1
(AM558887) Paracentrotus lividus EST, clone MPMGp1172C2267Q,... 54 0.014 1
(CR847846) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.017 8
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 0.027 14
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.037 19
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 32 0.039 13
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.056 11
(BX936462) Zebrafish DNA sequence from clone CH211-147O6 in ... 46 0.079 6
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 40 0.094 12
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 32 0.10 9
(CR847853) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.12 4
(AC202377) Medicago truncatula clone mth2-97o11, WORKING DRA... 36 0.19 6
(CU407108) Mouse DNA sequence from clone CH29-75G18 on chrom... 50 0.23 1
(AL606805) Mouse DNA sequence from clone RP23-449F16 on chro... 50 0.23 1
(AC175572) Xenopus tropicalis clone CH216-3N3, WORKING DRAFT... 50 0.23 1
(AC019272) Mus musculus chromosome 11 clone RP23-193P5 map 1... 50 0.23 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 0.27 15
(BX470265) Zebrafish DNA sequence from clone CH211-87A14 in ... 46 0.27 4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 28 0.33 15
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 34 0.45 12
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 32 0.46 11
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 38 0.46 10
(ED684309) GM_WBb0018K16.f GM_WBb Glycine max genomic clone ... 42 0.80 2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 36 0.88 11
(AM484607) Vitis vinifera, whole genome shotgun sequence, co... 48 0.89 1
(AM469062) Vitis vinifera contig VV78X238854.6, whole genome... 48 0.89 1
(AM463173) Vitis vinifera contig VV78X050053.1, whole genome... 48 0.89 1
(AC117082) Dictyostelium discoideum chromosome 2 map complem... 48 0.89 1
(AP009981) Lotus japonicus genomic DNA, clone: LjT28H23, TM0... 48 0.89 1
(AC225501) Medicago truncatula clone mth2-57h14, WORKING DRA... 48 0.89 1
(BJ415321) Dictyostelium discoideum cDNA clone:ddv22n05, 5' ... 48 0.89 1
(BJ415290) Dictyostelium discoideum cDNA clone:ddv22h03, 5' ... 48 0.89 1
(BJ415022) Dictyostelium discoideum cDNA clone:ddv21n05, 5' ... 48 0.89 1
(BJ413164) Dictyostelium discoideum cDNA clone:ddv14n07, 5' ... 48 0.89 1
(BJ411589) Dictyostelium discoideum cDNA clone:ddv5c04, 5' e... 48 0.89 1
(FC720261) CBBG13307.rev CBBG Lottia gigantea 12,15,18h embr... 48 0.89 1
(AC144728) Medicago truncatula clone mth2-6g7, complete sequ... 40 0.92 5
(BX901924) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.93 5
(AM054854) Isotricha prostoma EST, clone Iso_C12. 42 0.94 2
(EJ757669) 1092963096387 Global-Ocean-Sampling_GS-30-02-01-1... 40 1.0 2
(EJ772273) 1092971400518 Global-Ocean-Sampling_GS-30-02-01-1... 40 1.0 2
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 34 1.1 17
(ER374839) 1093030527133 Global-Ocean-Sampling_GS-34-01-01-1... 40 1.2 2
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 36 1.2 22
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 40 1.3 21
(AC179501) Strongylocentrotus purpuratus clone R3-64I16, WOR... 38 1.3 8
(AU037960) Dictyostelium discoideum slug cDNA, clone SSE496. 34 1.3 3
(AC171130) Helobdella robusta clone CH306-1A12, complete seq... 42 1.3 3
(AC151776) Ornithorhynchus anatinus chromosome UNK clone OAB... 42 1.5 4
(FG528113) 030710KAZE001280AF (KAZE) Kiwifruit young fruit l... 34 1.7 3
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 2.0 12
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 2.1 14
(AM472768) Vitis vinifera contig VV78X166644.6, whole genome... 36 2.3 4
(EV418469) 210771134 NGP Nasonia giraulti cDNA clone 135K7 5... 38 2.4 3
(AX345889) Sequence 960 from Patent WO0200928. 34 2.9 5
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 3.1 10
(AC116280) Rattus norvegicus clone CH230-337K5, *** SEQUENCI... 38 3.3 6
(CU856204) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.4 5
(AL365317) Mouse DNA sequence from clone RP23-179K8 on chrom... 46 3.5 1
(AC115917) Mus musculus chromosome 1, clone RP24-488H6, comp... 46 3.5 1
(DJ390481) A marker of abnormal sugar metabolism disorders a... 46 3.5 1
(BD360028) A marker for hepatic fibrosis and its use. 46 3.5 1
(AF441483) Homo sapiens alternate SOS1 (SOS1) gene, exon 22. 46 3.5 1
(AC105039) Homo sapiens chromosome 18, clone CTD-2357J19, co... 46 3.5 1
(AC019171) Homo sapiens BAC clone RP11-173C1 from 2, complet... 46 3.5 1
(AC016383) Homo sapiens chromosome 18, clone RP11-25O3, comp... 46 3.5 1
(AC119623) Rattus norvegicus clone CH230-378N6, *** SEQUENCI... 46 3.5 1
(AC119372) Rattus norvegicus clone CH230-454F8, *** SEQUENCI... 46 3.5 1
(AC115334) Rattus norvegicus clone CH230-182F14, WORKING DRA... 46 3.5 1
(AC111518) Rattus norvegicus clone CH230-142F15, WORKING DRA... 46 3.5 1
(ER587899) 1093016171714 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.5 1
(ER581153) 1093015839970 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.5 1
(ER518824) 1093015540065 Global-Ocean-Sampling_GS-35-01-01-1... 46 3.5 1
(ER408416) 1095366055238 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.5 1
(EK424629) 1095516004166 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.5 1
(EK361489) 1095469021869 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.5 1
(EJ954463) 1093018965386 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.5 1
(EJ949829) 1093018937738 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.5 1
(EJ924038) 1093018773815 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.5 1
(EJ923524) 1093018772087 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.5 1
(EJ488115) 1095403517095 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.5 1
(EJ352131) 1092963595643 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.5 1
(EJ083342) 1095460070988 Global-Ocean-Sampling_GS-26-01-01-1... 46 3.5 1
(CZ611454) OM__Ba0138E19.f OM__Ba Oryza minuta genomic clone... 46 3.5 1
(CU179134) Equus caballus GSS, BAC clone CH241-306E16, T7 en... 46 3.5 1
(AG774999) Macaca fuscata fuscata DNA, clone: MSB2-252F16_R,... 46 3.5 1
(BH699848) BOMKV47TR BO_2_3_KB Brassica oleracea genomic clo... 46 3.5 1
(AV370541) Mus musculus adult male colon cDNA, RIKEN full-le... 46 3.5 1
(DB094702) Homo sapiens cDNA clone TESTI4045139, 5' end, mRN... 46 3.5 1
(DB063196) Homo sapiens cDNA clone TESTI4003595, 5' end, mRN... 46 3.5 1
(AM980366) Sparus aurata EST, clone cDN14P0006M01, 5'-end se... 46 3.5 1
(DA395562) Homo sapiens cDNA clone BRTHA2034966, 5' end, mRN... 46 3.5 1
(CT754557) Paramecium tetraurelia 3-PRIME EST from clone LK0... 46 3.5 1
(CR742688) RZPD Homo sapiens cDNA clone IMAGp998E182979 = IM... 46 3.5 1
(BM679008) UI-E-EO0-ahx-d-16-0-UI.s1 UI-E-EO0 Homo sapiens c... 46 3.5 1
(AW665681) hj05h04.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 46 3.5 1
(AW241962) xn77d06.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 46 3.5 1

>(BJ444610) Dictyostelium discoideum cDNA clone:ddv56m23, 3' end,
single read.
Length = 718

Score = 1415 bits (714), Expect = 0.0
Identities = 717/717 (100%)
Strand = Plus / Minus


Query: 665 tgctactggcgtatcaagttatttacttgttgcaaattcaaaattcattgataataaatc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tgctactggcgtatcaagttatttacttgttgcaaattcaaaattcattgataataaatc 659


Query: 725 aagtggtgctggtggcgctattgcaactcaaggtagtgtttacacgagtttgaacaattg 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aagtggtgctggtggcgctattgcaactcaaggtagtgtttacacgagtttgaacaattg 599


Query: 785 tgaattcatttcaaattctgcaaatgccggtggttcattatcttttgaatattcaaatca 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgaattcatttcaaattctgcaaatgccggtggttcattatcttttgaatattcaaatca 539


Query: 845 aattcatttaagaaattgtacaatcagtggaaatgttggtgttggtcaaggtggtgcaat 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aattcatttaagaaattgtacaatcagtggaaatgttggtgttggtcaaggtggtgcaat 479


Query: 905 ctattcatcctattcaacgatttcaatggatgatactaaaattagtgccaatcaagctta 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctattcatcctattcaacgatttcaatggatgatactaaaattagtgccaatcaagctta 419


Query: 965 ccaaggtggtgctgtctattgctccgcttcaactttaaatattaccagttcaaatatccc 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccaaggtggtgctgtctattgctccgcttcaactttaaatattaccagttcaaatatccc 359


Query: 1025 attgaatggtaataccgatcttggcaatggtacagactcttatgaatggaaaggtgagga 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 attgaatggtaataccgatcttggcaatggtacagactcttatgaatggaaaggtgagga 299


Query: 1085 tggtataaaagtcaatgattatggtatttattgtgctctaactccaacctatacctattg 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tggtataaaagtcaatgattatggtatttattgtgctctaactccaacctatacctattg 239


Query: 1145 tactgtcaatggtgatacaccttatagtaaactttgcggtgaatccgatgtcactgaact 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tactgtcaatggtgatacaccttatagtaaactttgcggtgaatccgatgtcactgaact 179


Query: 1205 ttcaggtttaacagctggtcaaatcgctggtattgtcattggttgtactattggtgctgg 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttcaggtttaacagctggtcaaatcgctggtattgtcattggttgtactattggtgctgg 119


Query: 1265 tattttagcttttggtttagcctgggttatctcaaaaacaactattaaagaacatttcat 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tattttagcttttggtttagcctgggttatctcaaaaacaactattaaagaacatttcat 59


Query: 1325 tagactaagaagctcttcaacttcnaatacatcttattcactaaattattcattaaa 1381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tagactaagaagctcttcaacttcnaatacatcttattcactaaattattcattaaa 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,502,343,707
Number of extensions: 92855472
Number of successful extensions: 7854219
Number of sequences better than 10.0: 132
Length of query: 1381
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1357
Effective length of database: 97,308,875,965
Effective search space: 132048144684505
Effective search space used: 132048144684505
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12539-1 (Contig-U12539-1Q) /CSM_Contig/Contig-U12539-1Q.Seq.d
(1381 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP000678_461(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 67 2e-09
AP009552_100(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 64 1e-08
AC116979_55(AC116979|pid:none) Dictyostelium discoideum chromoso... 59 5e-07
CP001348_2709(CP001348|pid:none) Clostridium cellulolyticum H10,... 58 7e-07
CP000678_996(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 56 4e-06
CP000850_2596(CP000850|pid:none) Salinispora arenicola CNS-205, ... 56 4e-06
BX294133_86(BX294133|pid:none) Rhodopirellula baltica SH 1 compl... 55 6e-06
CP000934_587(CP000934|pid:none) Cellvibrio japonicus Ueda107, co... 54 1e-05
AP009552_5846(AP009552|pid:none) Microcystis aeruginosa NIES-843... 54 1e-05
CP000678_173(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 54 2e-05
AE002161_210(AE002161|pid:none) Chlamydophila pneumoniae AR39, c... 53 2e-05
CP000806_2538(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 53 2e-05
AE009440_484(AE009440|pid:none) Chlamydophila pneumoniae TW-183,... 53 3e-05
CP000393_2260(CP000393|pid:none) Trichodesmium erythraeum IMS101... 53 3e-05
BA000008_464(BA000008|pid:none) Chlamydophila pneumoniae J138 ge... 53 3e-05
AE017180_750(AE017180|pid:none) Geobacter sulfurreducens PCA, co... 53 3e-05
CP000667_3355(CP000667|pid:none) Salinispora tropica CNB-440, co... 53 3e-05
CP000804_2343(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 52 4e-05
CP000850_1092(CP000850|pid:none) Salinispora arenicola CNS-205, ... 52 4e-05
CP000678_411(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 52 4e-05
CP000804_2796(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 52 4e-05
CP000804_2906(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 52 5e-05
CP000850_1562(CP000850|pid:none) Salinispora arenicola CNS-205, ... 52 7e-05
CP000686_2219(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 52 7e-05
CP000678_1735(CP000678|pid:none) Methanobrevibacter smithii ATCC... 52 7e-05
CP000875_2302(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 51 9e-05
CP000678_1188(CP000678|pid:none) Methanobrevibacter smithii ATCC... 51 1e-04
CP000850_3509(CP000850|pid:none) Salinispora arenicola CNS-205, ... 51 1e-04
BX294140_142(BX294140|pid:none) Rhodopirellula baltica SH 1 comp... 50 1e-04
AC116305_85(AC116305|pid:none) Dictyostelium discoideum chromoso... 50 1e-04
CP000686_4172(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 50 3e-04
CP000678_1586(CP000678|pid:none) Methanobrevibacter smithii ATCC... 49 3e-04
BX294135_248(BX294135|pid:none) Rhodopirellula baltica SH 1 comp... 49 3e-04
CP000859_1698(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 49 3e-04
CP001034_2575(CP001034|pid:none) Natranaerobius thermophilus JW/... 49 3e-04
CP000678_1111(CP000678|pid:none) Methanobrevibacter smithii ATCC... 49 4e-04
CP000117_4696(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 49 4e-04
CP000850_4591(CP000850|pid:none) Salinispora arenicola CNS-205, ... 49 6e-04
AE017226_1351(AE017226|pid:none) Treponema denticola ATCC 35405,... 49 6e-04
CP000850_1573(CP000850|pid:none) Salinispora arenicola CNS-205, ... 49 6e-04
CP000478_2136(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 49 6e-04
CP000859_1782(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 49 6e-04
CP001390_1265(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 49 6e-04
CP000102_1067(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 48 0.001
CP000667_4373(CP000667|pid:none) Salinispora tropica CNB-440, co... 47 0.001
CP000667_1599(CP000667|pid:none) Salinispora tropica CNB-440, co... 47 0.002
CP000077_2071(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 47 0.002
AE001363_430(AE001363|pid:none) Chlamydophila pneumoniae CWL029,... 46 0.003
(P53832) RecName: Full=Cell wall integrity and stress response c... 46 0.003
AE017350_270(AE017350|pid:none) Cryptococcus neoformans var. neo... 46 0.003
AE009440_465(AE009440|pid:none) Chlamydophila pneumoniae TW-183,... 46 0.004
CP001276_641(CP001276|pid:none) Thermomicrobium roseum DSM 5159 ... 46 0.004
CP000686_1589(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 46 0.004
AP006861_723(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 46 0.004
CP000850_4221(CP000850|pid:none) Salinispora arenicola CNS-205, ... 45 0.005
CP000850_4215(CP000850|pid:none) Salinispora arenicola CNS-205, ... 45 0.005
CP001087_2096(CP001087|pid:none) Desulfobacterium autotrophicum ... 45 0.005
CP000859_201(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c... 45 0.005
(Q9RB65) RecName: Full=Probable outer membrane protein pmp10; Al... 45 0.005
CP001326_206(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 45 0.006
(Q9Z398) RecName: Full=Probable outer membrane protein pmp9; Alt... 45 0.006
CP000102_143(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 45 0.006
CP000667_1600(CP000667|pid:none) Salinispora tropica CNB-440, co... 45 0.006
CP000678_1306(CP000678|pid:none) Methanobrevibacter smithii ATCC... 45 0.006
CP000102_1066(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 45 0.008
CP000850_3516(CP000850|pid:none) Salinispora arenicola CNS-205, ... 44 0.011
CP000667_320(CP000667|pid:none) Salinispora tropica CNB-440, com... 44 0.011
CP000850_2927(CP000850|pid:none) Salinispora arenicola CNS-205, ... 44 0.014
CP001040_44(CP001040|pid:none) Nostoc punctiforme PCC 73102 plas... 44 0.014
CU468230_838(CU468230|pid:none) Acinetobacter baumannii str. SDF... 44 0.018
AP006861_722(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 44 0.018
AE017282_727(AE017282|pid:none) Methylococcus capsulatus str. Ba... 44 0.018
CU459141_849(CU459141|pid:none) Acinetobacter baumannii str. AYE... 44 0.018
AC116982_12(AC116982|pid:none) Dictyostelium discoideum chromoso... 44 0.018
CP000698_1102(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 43 0.024
AK122449_1(AK122449|pid:none) Mus musculus mRNA for mKIAA1114 pr... 43 0.024
(Q9Z899) RecName: Full=Probable outer membrane protein pmp6; Alt... 43 0.024
CP000473_152(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 43 0.024
CP000875_3176(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 43 0.024
CP000667_3935(CP000667|pid:none) Salinispora tropica CNB-440, co... 43 0.024
CP000828_3174(CP000828|pid:none) Acaryochloris marina MBIC11017,... 43 0.031
CP000667_2963(CP000667|pid:none) Salinispora tropica CNB-440, co... 43 0.031
AF331848_1(AF331848|pid:none) Mus musculus trophinin gene, compl... 42 0.040
CP000850_4219(CP000850|pid:none) Salinispora arenicola CNS-205, ... 42 0.040
CP000850_4732(CP000850|pid:none) Salinispora arenicola CNS-205, ... 42 0.040
CR848038_264(CR848038|pid:none) Chlamydophila abortus strain S26... 42 0.040
AF319977_1(AF319977|pid:none) Mus musculus mage-d3 mRNA, complet... 42 0.040
CP000667_3937(CP000667|pid:none) Salinispora tropica CNB-440, co... 42 0.053
CU651637_2163(CU651637|pid:none) Escherichia coli LF82 chromosom... 42 0.053
CP000247_2256(CP000247|pid:none) Escherichia coli 536, complete ... 42 0.053
EU190443_1(EU190443|pid:none) Chlamydomonas sp. CCMP681 ice-bind... 42 0.053
CU928158_880(CU928158|pid:none) Escherichia fergusonii ATCC 3546... 42 0.053
CP000970_2312(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 42 0.053
CP000243_2471(CP000243|pid:none) Escherichia coli UTI89, complet... 42 0.053
FM180568_2377(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 42 0.053
AE014075_2704(AE014075|pid:none) Escherichia coli CFT073, comple... 42 0.053
CP000667_3353(CP000667|pid:none) Salinispora tropica CNB-440, co... 42 0.053
CP000859_2037(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 42 0.053
FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS... 42 0.069
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS... 42 0.069
(Q9Z898) RecName: Full=Probable outer membrane protein pmp7; Alt... 42 0.069
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS... 42 0.069
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS... 42 0.069
AE001363_431(AE001363|pid:none) Chlamydophila pneumoniae CWL029,... 42 0.069
AY299409_1(AY299409|pid:none) Chlamydia trachomatis strain TW-5 ... 41 0.090
AY299411_1(AY299411|pid:none) Chlamydia trachomatis strain TW-3 ... 41 0.090
AP006861_721(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 41 0.090
(O84818) RecName: Full=Probable outer membrane protein pmpD; Alt... 41 0.090
CP000667_321(CP000667|pid:none) Salinispora tropica CNB-440, com... 41 0.090
AY299413_1(AY299413|pid:none) Chlamydia trachomatis strain TW-44... 41 0.090
AY299408_1(AY299408|pid:none) Chlamydia trachomatis strain HAR-1... 41 0.090
AY299410_1(AY299410|pid:none) Chlamydia trachomatis strain Apach... 41 0.090
AY299420_1(AY299420|pid:none) Chlamydia trachomatis strain UW-36... 41 0.090
CP000051_844(CP000051|pid:none) Chlamydia trachomatis A/HAR-13, ... 41 0.090
FM872308_828(FM872308|pid:none) Chlamydia trachomatis JALI20 ser... 41 0.090
CP000804_2190(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 41 0.12
CP000678_1585(CP000678|pid:none) Methanobrevibacter smithii ATCC... 41 0.12
CP000655_1089(CP000655|pid:none) Polynucleobacter necessarius su... 41 0.12
EU016610_16(EU016610|pid:none) Uncultured marine microorganism H... 41 0.12
DQ997624_52(DQ997624|pid:none) Thermus thermophilus phage YS40, ... 41 0.12
CP000875_2712(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 41 0.12
CP000667_3346(CP000667|pid:none) Salinispora tropica CNB-440, co... 40 0.15
CP001337_33(CP001337|pid:none) Chloroflexus aggregans DSM 9485, ... 40 0.15
AY299414_1(AY299414|pid:none) Chlamydia trachomatis strain Bour ... 40 0.15
CP000667_1214(CP000667|pid:none) Salinispora tropica CNB-440, co... 40 0.15
CP000678_1112(CP000678|pid:none) Methanobrevibacter smithii ATCC... 40 0.20
AL445565_208(AL445565|pid:none) Mycoplasma pulmonis (strain UAB ... 40 0.20
EU898532_1(EU898532|pid:none) Escherichia coli strain 87-14 puta... 40 0.26
CP000034_2264(CP000034|pid:none) Shigella dysenteriae Sd197, com... 40 0.26
CP000850_2416(CP000850|pid:none) Salinispora arenicola CNS-205, ... 40 0.26
CP000807_278(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear... 40 0.26
EU898533_1(EU898533|pid:none) Escherichia coli strain TB182A put... 40 0.26
CP000102_42(CP000102|pid:none) Methanosphaera stadtmanae DSM 309... 40 0.26
AF243415_1(AF243415|pid:none) Chlamydophila psittaci clone POS26... 40 0.26
CR848038_200(CR848038|pid:none) Chlamydophila abortus strain S26... 39 0.34
AE002161_295(AE002161|pid:none) Chlamydophila pneumoniae AR39, c... 39 0.34
CP000800_2411(CP000800|pid:none) Escherichia coli E24377A, compl... 39 0.34
(Q9Z896) RecName: Full=Probable outer membrane protein pmp13; Al... 39 0.34
AP009240_2494(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 39 0.34
CP001337_3223(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 39 0.34
CU928145_2436(CU928145|pid:none) Escherichia coli 55989 chromoso... 39 0.34
CR940353_287(CR940353|pid:none) Theileria annulata strain Ankara... 39 0.34
CP000909_3832(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 39 0.44
CP000272_1208(CP000272|pid:none) Burkholderia xenovorans LB400 c... 39 0.44
AY714872_23(AY714872|pid:none) Uncultured archaeon GZfos9D8 clon... 39 0.58
A81591(A81591) polymorphic membrane protein G family CP0307 [imp... 39 0.58
CP000667_2851(CP000667|pid:none) Salinispora tropica CNB-440, co... 39 0.58
CP000850_1572(CP000850|pid:none) Salinispora arenicola CNS-205, ... 39 0.58
CP000850_3508(CP000850|pid:none) Salinispora arenicola CNS-205, ... 39 0.58
CU928163_2528(CU928163|pid:none) Escherichia coli UMN026 chromos... 39 0.58
CP001010_660(CP001010|pid:none) Polynucleobacter necessarius sub... 39 0.58
CP000094_3787(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 39 0.58
(Q9Z393) RecName: Full=Probable outer membrane protein pmp8; Alt... 39 0.58
AE015925_270(AE015925|pid:none) Chlamydophila caviae GPIC, compl... 39 0.58
AP006861_737(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 38 0.76
CU638744_458(CU638744|pid:none) Podospora anserina genomic DNA c... 38 0.76
CP000393_317(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 38 0.76
AM884176_246(AM884176|pid:none) Chlamydia trachomatis strain L2/... 38 0.76
AC097174_12(AC097174|pid:none) Oryza sativa (japonica cultivar-g... 38 0.76
CP000667_3361(CP000667|pid:none) Salinispora tropica CNB-440, co... 38 0.76
CP000359_328(CP000359|pid:none) Deinococcus geothermalis DSM 113... 38 0.99
AE015925_269(AE015925|pid:none) Chlamydophila caviae GPIC, compl... 38 0.99
AE002160_679(AE002160|pid:none) Chlamydia muridarum Nigg, comple... 38 0.99
CP000678_266(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 38 0.99
CP001291_1953(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 38 0.99
(Q9PJY3) RecName: Full=Probable outer membrane protein pmpA; Alt... 38 0.99
AC161034_14(AC161034|pid:none) Medicago truncatula clone mth2-53... 38 0.99
AP007155_649(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 38 0.99
AD0249(AD0249) probable hemolysin activator protein YPO2044 [imp... 38 0.99
AE009952_2232(AE009952|pid:none) Yersinia pestis KIM, complete g... 38 0.99
CR931997_461(CR931997|pid:none) Corynebacterium jeikeium K411 co... 37 1.3
AY884091_1(AY884091|pid:none) Chlamydia trachomatis strain TW-5 ... 37 1.3
CP000653_3378(CP000653|pid:none) Enterobacter sp. 638, complete ... 37 1.3
CP000850_4220(CP000850|pid:none) Salinispora arenicola CNS-205, ... 37 1.3
AE009440_19(AE009440|pid:none) Chlamydophila pneumoniae TW-183, ... 37 1.3
(Q9Z880) RecName: Full=Probable outer membrane protein pmp18; Al... 37 1.7
AY884100_1(AY884100|pid:none) Chlamydia trachomatis strain UW-12... 37 1.7
AY184156_1(AY184156|pid:none) Chlamydia trachomatis serovar B/TW... 37 1.7
AY884099_1(AY884099|pid:none) Chlamydia trachomatis strain UW-4 ... 37 1.7
(P87179) RecName: Full=Cell wall integrity and stress response c... 37 1.7
CP000117_4154(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 37 1.7
AY967759_1(AY967759|pid:none) Chlamydia trachomatis strain TW-44... 37 1.7
AY884090_1(AY884090|pid:none) Chlamydia trachomatis strain HAR-1... 37 1.7
BA000030_4445(BA000030|pid:none) Streptomyces avermitilis MA-468... 37 1.7
CP001338_1743(CP001338|pid:none) Candidatus Methanosphaerula pal... 37 1.7
Z95620_16(Z95620|pid:none) S.pombe chromosome II cosmid c3D6. 37 1.7
T40167(T40167;T40374)hypothetical protein SPBC30B4.01c - fission... 37 1.7
AP007151_336(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 37 2.2
AM743169_3796(AM743169|pid:none) Stenotrophomonas maltophilia K2... 37 2.2
CP000393_487(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 37 2.2
(O84879) RecName: Full=Probable outer membrane protein pmpG; Alt... 37 2.2
AY967745_1(AY967745|pid:none) Chlamydia trachomatis strain Bour ... 37 2.2
AY967757_1(AY967757|pid:none) Chlamydia trachomatis strain 404 p... 37 2.2
AY967751_1(AY967751|pid:none) Chlamydia trachomatis strain UW-36... 37 2.2
AY601284_1(AY601284|pid:none) Haemophilus influenzae strain AAr9... 37 2.2
CR848038_263(CR848038|pid:none) Chlamydophila abortus strain S26... 37 2.2
CP000592_56(CP000592|pid:none) Ostreococcus lucimarinus CCE9901 ... 37 2.2
CP000521_2862(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 37 2.2
CP000667_3927(CP000667|pid:none) Salinispora tropica CNB-440, co... 36 2.9
AP006861_730(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 36 2.9
AM743169_953(AM743169|pid:none) Stenotrophomonas maltophilia K27... 36 2.9
AM884177_246(AM884177|pid:none) Chlamydia trachomatis L2b/UCH-1/... 36 2.9
AY967754_1(AY967754|pid:none) Chlamydia trachomatis strain 440 p... 36 2.9
CP000780_397(CP000780|pid:none) Candidatus Methanoregula boonei ... 36 2.9
AM884176_664(AM884176|pid:none) Chlamydia trachomatis strain L2/... 36 2.9
AE002161_298(AE002161|pid:none) Chlamydophila pneumoniae AR39, c... 36 3.8
(O86164) RecName: Full=Probable outer membrane protein pmp11; Al... 36 3.8
EF090729_1(EF090729|pid:none) Chlamydophila felis strain 1497V P... 36 3.8
FJ687207_1(FJ687207|pid:none) Escherichia coli strain P12b flage... 36 3.8
AP006861_802(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 36 3.8
CP001055_324(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 36 3.8
CP001055_925(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 36 3.8
(P07856) RecName: Full=Sericin 1; AltName: Full=Silk gum protein... 36 3.8
EU686632_5(EU686632|pid:none) Uncultured marine group III euryar... 36 3.8
CP000780_2122(CP000780|pid:none) Candidatus Methanoregula boonei... 36 3.8
AB112019_1(AB112019|pid:none) Bombyx mori ser1 mRNA for sericin ... 36 3.8
CP000383_3393(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 35 4.9
(Q7PMS9) RecName: Full=Protein lingerer; 35 4.9
CP000478_1068(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 35 4.9
CP000850_4423(CP000850|pid:none) Salinispora arenicola CNS-205, ... 35 4.9
AE015925_282(AE015925|pid:none) Chlamydophila caviae GPIC, compl... 35 4.9
AP006861_380(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 35 4.9
CR848038_266(CR848038|pid:none) Chlamydophila abortus strain S26... 35 4.9
CP000473_1912(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 35 4.9
CP000960_334(CP000960|pid:none) Burkholderia cenocepacia MC0-3 c... 35 6.4
AY184144_1(AY184144|pid:none) Chlamydia trachomatis serovar D/UW... 35 6.4
AY184149_1(AY184149|pid:none) Chlamydia trachomatis serovar I/UW... 35 6.4
CP000678_1567(CP000678|pid:none) Methanobrevibacter smithii ATCC... 35 6.4
(O84877) RecName: Full=Probable outer membrane protein pmpE; Alt... 35 6.4
(O84880) RecName: Full=Probable outer membrane protein pmpH; Alt... 35 6.4
CP000967_4196(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 35 6.4
AY184150_1(AY184150|pid:none) Chlamydia trachomatis serovar J/UW... 35 6.4
CR855106_4(CR855106|pid:none) Oryza sativa genomic DNA, chromoso... 35 6.4
BA000008_535(BA000008|pid:none) Chlamydophila pneumoniae J138 ge... 35 6.4
CP001324_733(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 35 6.4
AE013598_987(AE013598|pid:none) Xanthomonas oryzae pv. oryzae KA... 35 6.4
AY184165_1(AY184165|pid:none) Chlamydia trachomatis serovar J/UW... 35 6.4
AM039952_4423(AM039952|pid:none) Xanthomonas campestris pv. vesi... 35 6.4
AY184145_1(AY184145|pid:none) Chlamydia trachomatis serovar E/UW... 35 6.4
CR380958_95(CR380958|pid:none) Candida glabrata strain CBS138 ch... 35 6.4
AY184164_1(AY184164|pid:none) Chlamydia trachomatis serovar I/UW... 35 6.4
(Q9Z813) RecName: Full=Probable outer membrane protein pmp19; Al... 35 6.4
(Q9Z882) RecName: Full=Probable outer membrane protein pmp16; Al... 35 6.4
EU247655_1(EU247655|pid:none) Chlamydia trachomatis strain Bour ... 35 6.4
AY967761_1(AY967761|pid:none) Chlamydia trachomatis strain UW-92... 35 6.4
CP000698_1103(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 35 6.4
CP000393_486(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 35 6.4
CP000248_423(CP000248|pid:none) Novosphingobium aromaticivorans ... 35 6.4
BA000043_1699(BA000043|pid:none) Geobacillus kaustophilus HTA426... 35 6.4
(Q9PLB0) RecName: Full=Probable outer membrane protein pmpD; Alt... 35 8.4
AP006861_735(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 35 8.4
AM180255_50(AM180255|pid:none) Lawsonia intracellularis PHE/MN1-... 35 8.4
CP000282_2420(CP000282|pid:none) Saccharophagus degradans 2-40, ... 35 8.4
CP000353_1075(CP000353|pid:none) Ralstonia metallidurans CH34 me... 35 8.4
C81265(C81265)probable lipoprotein Cj1678 [imported] - Campyloba... 35 8.4
AL111168_1592(AL111168|pid:none) Campylobacter jejuni subsp. jej... 35 8.4
D81411(D81411)probable lipoprotein Cj0629 [imported] - Campyloba... 35 8.4
CP000821_2338(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 35 8.4
S52714(S52714) sericin1B - silkworm &Z48802_1(Z48802|pid:none) 35 8.4
AE017226_1919(AE017226|pid:none) Treponema denticola ATCC 35405,... 35 8.4
AE010299_4473(AE010299|pid:none) Methanosarcina acetivorans str.... 35 8.4
CP000743_114(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 35 8.4
CP000460_897(CP000460|pid:none) Burkholderia cenocepacia HI2424 ... 35 8.4
CP000571_1159(CP000571|pid:none) Burkholderia pseudomallei 668 c... 35 8.4
EU190441_1(EU190441|pid:none) Chlamydomonas sp. CCMP681 ice-bind... 35 8.4
(Q68Y01) RecName: Full=Putative phosphotransferase RT0001; ... 35 8.4
AP008957_5513(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 35 8.4

>CP000678_461(CP000678|pid:none) Methanobrevibacter smithii ATCC
35061, complete genome.
Length = 1026

Score = 67.0 bits (162), Expect = 2e-09
Identities = 40/113 (35%), Positives = 59/113 (52%)
Frame = +3

Query: 681 SYLLVANSKFIDNKSSGAGGAIATQGSVYTSLNNCEFISNSANAGGSLSFEYSNQIHLRN 860
S L V+N FI+N ++ GAI GS T ++NC FI+N+AN GG++ SN + N
Sbjct: 376 SGLTVSNCSFINNTANNGAGAIYNSGSGLT-VSNCSFINNTANNGGAIHSSCSNST-IVN 433

Query: 861 CTISGNVGVGQGGAIYSSYSTISMDDTKISANQAYQGGAVYCSASTLNITSSN 1019
C N+ GAI+SS S ++ N A GA+Y + S + + N
Sbjct: 434 CNFINNIANNGAGAIHSSCSNSTISSCNFINNTANHAGAIYNAGSDSTMMNCN 486

Score = 66.6 bits (161), Expect = 2e-09
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +3

Query: 681 SYLLVANSKFIDNKSSGA-GGAIATQGSVYTSLNNCEFISNSANAGGSLSFEYSNQIHLR 857
S L V N FI+N ++ G AI GS T +NNC FI+N+AN G + + + +
Sbjct: 323 SGLTVNNCSFINNTATNDWGSAIYNSGSGLT-VNNCSFINNTANNGAGAIYNTESGLTVS 381

Query: 858 NCTISGNVGVGQGGAIYSSYSTISMDDTKISANQAYQGGAVYCSASTLNITSSNIPLNGN 1037
NC+ N GAIY+S S +++ + N A GGA++ S S I + N +N
Sbjct: 382 NCSFINNTANNGAGAIYNSGSGLTVSNCSFINNTANNGGAIHSSCSNSTIVNCNF-INNI 440

Query: 1038 TDLGNG 1055
+ G G
Sbjct: 441 ANNGAG 446

Score = 65.9 bits (159), Expect = 3e-09
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +3

Query: 672 GVSSYLLVANSKFIDNKSSGAGGAIATQGSVYTSLNNCEFISNSA-NAGGSLSFEYSNQI 848
G S L+V N FI+N + G AI GS T +NNC FI+N+A N GS + + +
Sbjct: 294 GYDSSLIVRNCSFINNTAYNGGCAIYNSGSGLT-VNNCSFINNTATNDWGSAIYNSGSGL 352

Query: 849 HLRNCTISGNVGVGQGGAIYSSYSTISMDDTKISANQAYQG-GAVYCSASTLNITSSNIP 1025
+ NC+ N GAIY++ S +++ + N A G GA+Y S S +T SN
Sbjct: 353 TVNNCSFINNTANNGAGAIYNTESGLTVSNCSFINNTANNGAGAIYNSGS--GLTVSNCS 410

Query: 1026 LNGNTDLGNG 1055
NT G
Sbjct: 411 FINNTANNGG 420

Score = 57.8 bits (138), Expect = 9e-07
Identities = 48/146 (32%), Positives = 73/146 (50%)
Frame = +3

Query: 693 VANSKFIDNKSSGAGGAIATQGSVYTSLNNCEFISNSANAGGSLSFEYSNQIHLRNCTIS 872
+++ FI+N ++ AG AI GS T +N C FI+N AN GG++ SN + NC
Sbjct: 457 ISSCNFINNTANHAG-AIYNAGSDSTMMN-CNFINNIANNGGAIHSSCSNST-IVNCNFI 513

Query: 873 GNVGVGQGGAIYSSYSTISMDDTKISANQAYQGGAVYCSASTLNITSSNIPLNGNTDLGN 1052
N GGAI+ ++ +I++ ++K N A +G A+Y + I+ I LN NT
Sbjct: 514 NNT-ANNGGAIH-NFGSITVSNSKFKDNNASKGVAIYNDVYS-QISIGTINLNNNT---- 566

Query: 1053 GTDSYEWKGEDGIKVNDYGIYCALTP 1130
+ G + K Y I LTP
Sbjct: 567 ------YSGINNGKTYIYNIGTILTP 586

Score = 45.8 bits (107), Expect = 0.004
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Frame = +3

Query: 672 GVSSYLLVANSKFIDNKSSGAGGAIATQGSVYTSLNNCEFISNSANAGGS---------- 821
G S L ++N +++K S + ++ ++NNC FI+ S + S
Sbjct: 235 GSDSSLSISNCNLVNSKISNSDSSL--------TVNNCNFINGSIESSDSSLIVRNCNFV 286

Query: 822 ----LSFEYSNQIHLRNCTISGNVGVGQGGAIYSSYSTISMDDTKISANQAYQ--GGAVY 983
+ Y + + +RNC+ N G AIY+S S +++++ N A G A+Y
Sbjct: 287 NSRIYNGGYDSSLIVRNCSFINNTAYNGGCAIYNSGSGLTVNNCSFINNTATNDWGSAIY 346

Query: 984 CSASTLNITSSNIPLNGNTDLGNGTDSYEWKGEDGIKVND 1103
S S L + + + +N + G G + E G+ V++
Sbjct: 347 NSGSGLTVNNCSF-INNTANNGAGA---IYNTESGLTVSN 382

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,597,437,681
Number of extensions: 29754340
Number of successful extensions: 91308
Number of sequences better than 10.0: 267
Number of HSP's gapped: 90569
Number of HSP's successfully gapped: 465
Length of query: 460
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 328
Effective length of database: 623,955,076
Effective search space: 204657264928
Effective search space used: 204657264928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.87 gvh: 0.44 alm: 0.25 top: 0.73 tms: 0.27 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

32.0 %: plasma membrane
20.0 %: endoplasmic reticulum
16.0 %: vacuolar
12.0 %: mitochondrial
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for Contig-U12539-1 is pla

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0