Contig-U12533-1 |
Contig ID |
Contig-U12533-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1256 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
3 |
Number of EST |
4 |
Link to clone list |
U12533 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 1 |
Homology vs DNA |
Query= Contig-U12533-1 (Contig-U12533-1Q) /CSM_Contig/Contig-U12533-1Q.Seq.d (1266 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ396954) Dictyostelium discoideum cDNA clone:dds44f14, 5' ... 1116 0.0 2 (BJ425307) Dictyostelium discoideum cDNA clone:ddv55f11, 5' ... 1066 0.0 2 (BJ444122) Dictyostelium discoideum cDNA clone:ddv55f11, 3' ... 918 0.0 2 (BJ409148) Dictyostelium discoideum cDNA clone:dds39g14, 3' ... 910 0.0 3 (BJ395625) Dictyostelium discoideum cDNA clone:dds39g14, 5' ... 906 0.0 2 (BJ438285) Dictyostelium discoideum cDNA clone:ddv36p19, 3' ... 416 e-129 3 (BJ405204) Dictyostelium discoideum cDNA clone:dds30m23, 3' ... 416 e-129 3 (BJ349666) Dictyostelium discoideum cDNA clone:dda37c09, 3' ... 40 2e-08 5 (EF587366) Oedogonium cardiacum strain SAG 575-1b RNA polyme... 56 6e-04 2 (BX248583) Blochmannia floridanus complete genome. 40 8e-04 17 (EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas... 56 0.003 1 (AL844506) Plasmodium falciparum chromosome 7. 36 0.004 16 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 36 0.012 17 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.039 9 (AC007494) Homo sapiens chromosome 16 clone RP11-329J18, com... 52 0.052 1 (AC027467) Homo sapiens chromosome 15 clone RP11-215M5 map 1... 52 0.052 1 (AI651893) wb64b10.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I... 52 0.052 1 (EK043670) 1092959537131 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.055 2 (ER556887) 1092351559034 Global-Ocean-Sampling_GS-36-01-01-2... 42 0.064 2 (CP000361) Arcobacter butzleri RM4018, complete genome. 38 0.065 18 (EK047431) 1092959645841 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.065 2 (EK339056) 1095467053519 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.079 2 (DH069985) Oryzias latipes Fosmid clone:GOLWFno130_a20, reve... 34 0.093 3 (AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.093 13 (AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.11 11 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 34 0.11 12 (Z98551) Plasmodium falciparum MAL3P6. 32 0.11 10 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 34 0.12 2 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 0.16 9 (EU849490) Gonystylus bancanus chloroplast, partial genome. 42 0.19 4 (AM482977) Vitis vinifera contig VV78X020187.3, whole genome... 50 0.21 1 (AC193303) Sorex araneus clone SA_Ba-476B14, WORKING DRAFT S... 50 0.21 1 (AC172730) Sorex araneus clone SA_Ba-209P7, WORKING DRAFT SE... 50 0.21 1 (ER389704) 1094428790621 Global-Ocean-Sampling_GS-34-01-01-1... 50 0.21 1 (CK853210) 13944 Stolon Solanum tuberosum cDNA, mRNA sequence. 50 0.21 1 (CO729917) Hm_pupb_14H08_pBACe3.6_t7 Heliconius melpomene pu... 40 0.21 3 (AM624239) Entamoeba dispar GSS, clone dispar108a02.q1k. 46 0.21 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 0.26 16 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.28 15 (AM444346) Vitis vinifera contig VV78X052782.2, whole genome... 32 0.29 4 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.30 15 (AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 0.33 13 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 0.35 13 (AY429682) Dictyostelium discoideum dusty protein kinase mRN... 36 0.42 4 (BH984388) ode98h10.b1 B.oleracea002 Brassica oleracea genom... 40 0.43 3 (BH972563) odh12c04.g1 B.oleracea002 Brassica oleracea genom... 40 0.43 3 (AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 42 0.45 9 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 0.47 11 (AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 34 0.49 14 (AY429683) Dictyostelium discoideum dusty protein kinase gen... 36 0.52 4 (AM489089) Vitis vinifera contig VV78X069515.3, whole genome... 36 0.53 2 (AM428814) Vitis vinifera contig VV78X216686.4, whole genome... 36 0.53 2 (AA881572) vx20d03.r1 Soares_thymus_2NbMT Mus musculus cDNA ... 36 0.54 3 (CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 0.55 16 (AB253417) Apis mellifera hbg3 gene for alpha-glucosidase, e... 36 0.59 6 (AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 0.62 12 (AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 0.70 15 (AP008075) Lotus japonicus genomic DNA, clone:LjB08F07, BM1431. 38 0.71 5 (CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 34 0.76 16 (AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 32 0.77 11 (AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 32 0.78 11 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 0.79 9 (AC169038) Mus musculus BAC clone RP23-31H24 from chromosome... 48 0.82 1 (AC120153) Mus musculus chromosome 14, clone RP24-251C20, co... 48 0.82 1 (AL159159) Human DNA sequence from clone RP11-88J11 on chrom... 48 0.82 1 (AC213586) Solanum tuberosum chromosome 6 clone RHPOTKEY075F... 48 0.82 1 (AC174022) Bos taurus clone CH240-92O8, WORKING DRAFT SEQUEN... 48 0.82 1 (FH635839) CHO_OF4564xc10f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.82 1 (FH628874) CHO_OF4553xe02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.82 1 (FH131242) CHO_OF3489xo16r1.ab1 CHO_OF3 Nicotiana tabacum ge... 48 0.82 1 (CA760194) BR060007A20D04.ab1 IRRI clones Oryza sativa Indic... 48 0.82 1 (BX928032) Oryza sativa cDNA clone:p826h06p3. 48 0.82 1 (DV068356) UGS01_16_D18.x1 FH UGS01 Mus musculus cDNA clone ... 40 0.85 2 (AC110079) Homo sapiens BAC clone RP11-384K6 from 4, complet... 44 0.88 5 (AM462249) Vitis vinifera, whole genome shotgun sequence, co... 34 0.97 6 (DU908908) 368335 Tomato EcoRI BAC Library Solanum lycopersi... 38 1.1 2 (AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 32 1.1 2 (AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 32 1.2 2 (AP008216) Oryza sativa (japonica cultivar-group) genomic DN... 32 1.2 2 (AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 34 1.2 5 (AC190230) Pan troglodytes BAC clone CH251-734F1 from chromo... 34 1.4 5 (AC138454) Oryza sativa (japonica cultivar-group) chromosome... 32 1.7 2 (AC087544) Oryza sativa Japonica Group chromosome 10 clone n... 32 1.7 2 (AP005285) Oryza sativa Japonica Group genomic DNA, chromoso... 32 1.7 2 (AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 34 1.7 10 (AC196914) Dasypus novemcinctus clone VMRC5-132B20, complete... 36 1.7 2 (EA680674) Sequence 59553 from patent US 7365185. 32 1.9 2 (AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 1.9 13 (AC099106) Rattus norvegicus clone CH230-181A13, *** SEQUENC... 34 1.9 7 (AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 32 2.0 12 (EA625916) Sequence 4795 from patent US 7365185. 32 2.1 2 (AC195445) Spermophilus tridecemlineatus clone VMRC20-337D9,... 36 2.1 5 (BH234920) MHAA_C03.y Spiroplasma kunkelii H Spiroplasma kun... 38 2.1 2 (AC177006) Strongylocentrotus purpuratus clone R3-37D23, WOR... 34 2.2 5 (CL838505) OR_CBa0064J04.f OR_CBa Oryza rufipogon genomic cl... 32 2.2 2 (EI241535) OR__Ba0040J21.f OR__Ba Oryza rufipogon genomic cl... 32 2.2 2 (AQ292032) nbxb0041E21r CUGI Rice BAC Library Oryza sativa J... 32 2.2 2 (FF675872) G826P569RD7.T0 Acorn worm normalized juvenile pEx... 36 2.2 2 (FF481307) G613P6313RC6.T0 Acorn worm blastula/gastrula pCMV... 36 2.2 2 (AV556336) Arabidopsis thaliana cDNA clone:SQ040e10F, 3' end. 32 2.3 2
>(BJ396954) Dictyostelium discoideum cDNA clone:dds44f14, 5' end, single read. Length = 615
Score = 1116 bits (563), Expect(2) = 0.0 Identities = 563/563 (100%) Strand = Plus / Plus
Query: 40 aatatgcctagttatcaactctttctctaattgtagtcttttggttgctccagatggtta 99 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53 aatatgcctagttatcaactctttctctaattgtagtcttttggttgctccagatggtta 112
Query: 100 ttataacatttaccgagaaaataaaattgaaaatattttaaatttaaaaccaaatggtaa 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113 ttataacatttaccgagaaaataaaattgaaaatattttaaatttaaaaccaaatggtaa 172
Query: 160 caaatcacaagattcatattatccagatgtgtgtagtaaagcggtaaaaaataaagaagg 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 caaatcacaagattcatattatccagatgtgtgtagtaaagcggtaaaaaataaagaagg 232
Query: 220 tgtaaaaagttttatcttatcttcattccctctttcaactaaagagtatgctaacgttat 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 tgtaaaaagttttatcttatcttcattccctctttcaactaaagagtatgctaacgttat 292
Query: 280 tgtaacaaagggttcacatatgacattgggtgatggagaatatcatcaaatatttaatat 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 293 tgtaacaaagggttcacatatgacattgggtgatggagaatatcatcaaatatttaatat 352
Query: 340 caatagatttttgaatatagtttgtgttgagggttcacttgtatttagtacaaaagatgt 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 353 caatagatttttgaatatagtttgtgttgagggttcacttgtatttagtacaaaagatgt 412
Query: 400 tgtatatatgagtgcgttggtaatattacctggtggtaattttgaatgtatagattgcac 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 413 tgtatatatgagtgcgttggtaatattacctggtggtaattttgaatgtatagattgcac 472
Query: 460 catcaaatttcgagatctatatccaaccaactcattaattgacccatttggttttttacc 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 473 catcaaatttcgagatctatatccaaccaactcattaattgacccatttggttttttacc 532
Query: 520 tggaattattactttgggaggttcattatctcttttaggaaagcaaaaaactgtgtatag 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 533 tggaattattactttgggaggttcattatctcttttaggaaagcaaaaaactgtgtatag 592
Query: 580 tgcagttttaatagatgaaaata 602 ||||||||||||||||||||||| Sbjct: 593 tgcagttttaatagatgaaaata 615
Score = 36.2 bits (18), Expect(2) = 0.0 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 11 atgaaattagaacaaagg 28 |||||||||||||||||| Sbjct: 23 atgaaattagaacaaagg 40
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,574,058,812 Number of extensions: 102712312 Number of successful extensions: 8754473 Number of sequences better than 10.0: 288 Length of query: 1266 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1242 Effective length of database: 97,308,875,965 Effective search space: 120857623948530 Effective search space used: 120857623948530 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 3 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
2 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |