Contig-U12533-1
Contig ID Contig-U12533-1
Contig update 2002.12.18
Contig sequence
>Contig-U12533-1 (Contig-U12533-1Q) /CSM_Contig/Contig-U12533-1Q.Seq.d
GCTCCACAAGATGAAATTAGAACAAAGGATATTTTTTTTAATATGCCTAG
TTATCAACTCTTTCTCTAATTGTAGTCTTTTGGTTGCTCCAGATGGTTAT
TATAACATTTACCGAGAAAATAAAATTGAAAATATTTTAAATTTAAAACC
AAATGGTAACAAATCACAAGATTCATATTATCCAGATGTGTGTAGTAAAG
CGGTAAAAAATAAAGAAGGTGTAAAAAGTTTTATCTTATCTTCATTCCCT
CTTTCAACTAAAGAGTATGCTAACGTTATTGTAACAAAGGGTTCACATAT
GACATTGGGTGATGGAGAATATCATCAAATATTTAATATCAATAGATTTT
TGAATATAGTTTGTGTTGAGGGTTCACTTGTATTTAGTACAAAAGATGTT
GTATATATGAGTGCGTTGGTAATATTACCTGGTGGTAATTTTGAATGTAT
AGATTGCACCATCAAATTTCGAGATCTATATCCAACCAACTCATTAATTG
ACCCATTTGGTTTTTTACCTGGAATTATTACTTTGGGAGGTTCATTATCT
CTTTTAGGAAAGCAAAAAACTGTGTATAGTGCAGTTTTAATAGATGAAAA
TA----------NNNNNNNNNNGGCTCATTTAATGTACGAGTTACATTAT
CACTAACGAAATCTTTAGATAATATTATATTTCAAGTATATTTTCCAATG
GTTACAGTATTTAATATATATTCATTTTATTCAGGATGGGCAATGATTGA
TTCAAATATAGAAAAAGAAATAATAATAGATGGTAATATATTTAAAAAAG
GTTGTCAACAACAGGTATTAGGTAATTGTACAATATCAACAAATTCAAAG
TTAATAACAGGTTTACCAAGTGTAACAGAATCAGACAAACTTAATAGACT
ATTTTCAAGTGGTATAACATCTATCAACCCATATGAACCTGTAACAATAA
CAATACCAATTGATAAAGAATCAAAAAAGAATCAAATCCAATTATTTTTC
ACTCACCAACCAATTGATATAGAAACCAGTCTATTATCAATATATGTAGA
GAATCAACCAATATTCCTTTTAGAACCATTACAAAGTAATTTAGATTCAA
CATTTAAAAATTTAACATTTCATTATGAAAATTCAAAATCATTAGAAAAA
ATCAAAATTACATTTATAACAAGAGGCGATATTTATTTAACATCTACAGC
GATTTATTCATCAACTAACCAACCTATATATAACGAAGTTATTGGTATAA
AGAACAATTAAATATA

Gap gap included
Contig length 1256
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 3
Number of EST 4
Link to clone list U12533
List of clone(s)

est1=SHK451F,-10,602
est2=SHH652F,-6,496
est3=VHM343F,1,577
est4=VHM343Z,603,1247
Translated Amino Acid sequence
LHKMKLEQRIFFLICLVINSFSNCSLLVAPDGYYNIYRENKIENILNLKPNGNKSQDSYY
PDVCSKAVKNKEGVKSFILSSFPLSTKEYANVIVTKGSHMTLGDGEYHQIFNINRFLNIV
CVEGSLVFSTKDVVYMSALVILPGGNFECIDCTIKFRDLYPTNSLIDPFGFLPGIITLGG
SLSLLGKQKTVYSAVLIDEN---

---XXXGSFNVRVTLSLTKSLDNIIFQVYFPMVTVFNIYSFYSGWAMIDSNIEKEIIIDG
NIFKKGCQQQVLGNCTISTNSKLITGLPSVTESDKLNRLFSSGITSINPYEPVTITIPID
KESKKNQIQLFFTHQPIDIETSLLSIYVENQPIFLLEPLQSNLDSTFKNLTFHYENSKSL
EKIKITFITRGDIYLTSTAIYSSTNQPIYNEVIGIKNN*i


Translated Amino Acid sequence (All Frames)
Frame A:
apqdeirtkdiffnmpsyqlfl*l*sfgcsrwll*hlprk*n*kyfkfktkw*qitrfil
srcv**sgkk*rrckkfylifipsfn*rvc*rycnkgftydig*wrissni*yq*ifeys
lc*gftci*ykrcciyecvgnitww*f*myrlhhqisrsisnqlin*piwfftwnyyfgr
fiisfrkakncv*csfnr*k---

---xxxxli*ctsyiitneifr*yyissifsngysi*yifilfrmgnd*fkyrkrnnnrw
*yi*krlsttgir*lyninkfkvnnrftkcnrirqt**tifkwyniyqpi*tcnnnntn*
*rikkesnpiifhsptn*yrnqsiinicrestnipfrtitk*frfni*kfnisl*kfkii
rknqnyiynkrrylfniysdlfin*ptyi*rsywykeqlni

Frame B:
LHKMKLEQRIFFLICLVINSFSNCSLLVAPDGYYNIYRENKIENILNLKPNGNKSQDSYY
PDVCSKAVKNKEGVKSFILSSFPLSTKEYANVIVTKGSHMTLGDGEYHQIFNINRFLNIV
CVEGSLVFSTKDVVYMSALVILPGGNFECIDCTIKFRDLYPTNSLIDPFGFLPGIITLGG
SLSLLGKQKTVYSAVLIDEN---

---XXXGSFNVRVTLSLTKSLDNIIFQVYFPMVTVFNIYSFYSGWAMIDSNIEKEIIIDG
NIFKKGCQQQVLGNCTISTNSKLITGLPSVTESDKLNRLFSSGITSINPYEPVTITIPID
KESKKNQIQLFFTHQPIDIETSLLSIYVENQPIFLLEPLQSNLDSTFKNLTFHYENSKSL
EKIKITFITRGDIYLTSTAIYSSTNQPIYNEVIGIKNN*i

Frame C:
str*n*nkgyff*ya*lstlslivvfwllqmviitftekiklkif*i*nqmvtnhkihii
qmcvvkr*kikkv*kvlsylhslfqlksmltll*qrvhi*hwvmeniikylisidf*i*f
vlrvhlylvqkmlyi*vrw*yylvvilnv*iapsnfeiyiqpth*lthlvfylelllwev
hylf*eskklcivqf**mki---

---xxxahlmyelhyh*rnl*iilyfkyifqwlqyliyihfiqdgq*liqi*kkk***mv
iylkkvvnnry*vivqyqqiqs**qvyqv*qnqtnlidyfqvv*hlsthmnl*q*qyqli
knqkriksnyfsltnqli*kpvyyqym*rinqysf*nhykvi*iqhlki*hfimkiqnh*
kksklhl*qeaifi*hlqrfihqltnlyitkllv*rtiky

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12533-1 (Contig-U12533-1Q)
/CSM_Contig/Contig-U12533-1Q.Seq.d
(1266 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12533-1 (Contig-U12533-1Q) /CSM_Contig/Conti... 1146 0.0
Contig-U12062-1 (Contig-U12062-1Q) /CSM_Contig/Conti... 416 e-116
Contig-U11254-1 (Contig-U11254-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U08884-1 (Contig-U08884-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U04232-1 (Contig-U04232-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U14667-1 (Contig-U14667-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U05865-1 (Contig-U05865-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U03858-1 (Contig-U03858-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U14269-1 (Contig-U14269-1Q) /CSM_Contig/Conti... 36 0.090

>Contig-U12533-1 (Contig-U12533-1Q) /CSM_Contig/Contig-U12533-1Q.Seq.d
Length = 1266

Score = 1146 bits (578), Expect = 0.0
Identities = 594/602 (98%)
Strand = Plus / Plus


Query: 1 gctccacaagatgaaattagaacaaaggatannnnnnnnaatatgcctagttatcaactc 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gctccacaagatgaaattagaacaaaggatattttttttaatatgcctagttatcaactc 60


Query: 61 tttctctaattgtagtcttttggttgctccagatggttattataacatttaccgagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttctctaattgtagtcttttggttgctccagatggttattataacatttaccgagaaaa 120


Query: 121 taaaattgaaaatattttaaatttaaaaccaaatggtaacaaatcacaagattcatatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaaattgaaaatattttaaatttaaaaccaaatggtaacaaatcacaagattcatatta 180


Query: 181 tccagatgtgtgtagtaaagcggtaaaaaataaagaaggtgtaaaaagttttatcttatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccagatgtgtgtagtaaagcggtaaaaaataaagaaggtgtaaaaagttttatcttatc 240


Query: 241 ttcattccctctttcaactaaagagtatgctaacgttattgtaacaaagggttcacatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcattccctctttcaactaaagagtatgctaacgttattgtaacaaagggttcacatat 300


Query: 301 gacattgggtgatggagaatatcatcaaatatttaatatcaatagatttttgaatatagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gacattgggtgatggagaatatcatcaaatatttaatatcaatagatttttgaatatagt 360


Query: 361 ttgtgttgagggttcacttgtatttagtacaaaagatgttgtatatatgagtgcgttggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgtgttgagggttcacttgtatttagtacaaaagatgttgtatatatgagtgcgttggt 420


Query: 421 aatattacctggtggtaattttgaatgtatagattgcaccatcaaatttcgagatctata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatattacctggtggtaattttgaatgtatagattgcaccatcaaatttcgagatctata 480


Query: 481 tccaaccaactcattaattgacccatttggttttttacctggaattattactttgggagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccaaccaactcattaattgacccatttggttttttacctggaattattactttgggagg 540


Query: 541 ttcattatctcttttaggaaagcaaaaaactgtgtatagtgcagttttaatagatgaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcattatctcttttaggaaagcaaaaaactgtgtatagtgcagttttaatagatgaaaa 600


Query: 601 ta 602
||
Sbjct: 601 ta 602


Score = 936 bits (472), Expect = 0.0
Identities = 472/472 (100%)
Strand = Plus / Plus


Query: 623 ggctcatttaatgtacgagttacattatcactaacgaaatctttagataatattatattt 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggctcatttaatgtacgagttacattatcactaacgaaatctttagataatattatattt 682


Query: 683 caagtatattttccaatggttacagtatttaatatatattcattttattcaggatgggca 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caagtatattttccaatggttacagtatttaatatatattcattttattcaggatgggca 742


Query: 743 atgattgattcaaatatagaaaaagaaataataatagatggtaatatatttaaaaaaggt 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atgattgattcaaatatagaaaaagaaataataatagatggtaatatatttaaaaaaggt 802


Query: 803 tgtcaacaacaggtattaggtaattgtacaatatcaacaaattcaaagttaataacaggt 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgtcaacaacaggtattaggtaattgtacaatatcaacaaattcaaagttaataacaggt 862


Query: 863 ttaccaagtgtaacagaatcagacaaacttaatagactattttcaagtggtataacatct 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttaccaagtgtaacagaatcagacaaacttaatagactattttcaagtggtataacatct 922


Query: 923 atcaacccatatgaacctgtaacaataacaataccaattgataaagaatcaaaaaagaat 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 atcaacccatatgaacctgtaacaataacaataccaattgataaagaatcaaaaaagaat 982


Query: 983 caaatccaattatttttcactcaccaaccaattgatatagaaaccagtctattatcaata 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 caaatccaattatttttcactcaccaaccaattgatatagaaaccagtctattatcaata 1042


Query: 1043 tatgtagagaatcaaccaatattccttttagaaccattacaaagtaatttag 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 tatgtagagaatcaaccaatattccttttagaaccattacaaagtaatttag 1094


Score = 216 bits (109), Expect = 4e-56
Identities = 109/109 (100%)
Strand = Plus / Plus


Query: 1158 ttacatttataacaagaggcgatatttatttaacatctacagcgatttattcatcaacta 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 ttacatttataacaagaggcgatatttatttaacatctacagcgatttattcatcaacta 1217


Query: 1218 accaacctatatataacgaagttattggtataaagaacaattaaatata 1266
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 accaacctatatataacgaagttattggtataaagaacaattaaatata 1266


>Contig-U12062-1 (Contig-U12062-1Q) /CSM_Contig/Contig-U12062-1Q.Seq.d
Length = 1397

Score = 416 bits (210), Expect = e-116
Identities = 282/306 (92%)
Strand = Plus / Plus


Query: 782 ggtaatatatttaaaaaaggttgtcaacaacaggtattaggtaattgtacaatatcaaca 841
||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 790 ggtaaaatatttaaatcaggttgccaacaacaggtattaggtaattgtacaatatcaaca 849


Query: 842 aattcaaagttaataacaggtttaccaagtgtaacagaatcagacaaacttaatagacta 901
||||||||||| |||| || || |||| |||||||||| |||| ||||||||||| ||
Sbjct: 850 aattcaaagtttataaatggcttgccaaatgtaacagaaacagatgaacttaatagatta 909


Query: 902 ttttcaagtggtataacatctatcaacccatatgaacctgtaacaataacaataccaatt 961
|||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 910 ttttcaagtggtataacatcaatcaatccatatgaacctgtgacaattacaataccaatt 969


Query: 962 gataaagaatcaaaaaagaatcaaatccaattatttttcactcaccaaccaattgatata 1021
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 970 gataaagaatcaaaaaagaatcaaatccaattattttttactcaccaaccaattgatata 1029


Query: 1022 gaaaccagtctattatcaatatatgtagagaatcaaccaatattccttttagaaccatta 1081
||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 1030 gaatatagtctattatcaatatatgtagaaaatcaaccaatattccttttagaacaatta 1089


Query: 1082 caaagt 1087
||||||
Sbjct: 1090 caaagt 1095


Score = 75.8 bits (38), Expect = 1e-13
Identities = 59/66 (89%)
Strand = Plus / Plus


Query: 690 attttccaatggttacagtatttaatatatattcattttattcaggatgggcaatgattg 749
||||||||| | ||||||||| |||| ||||| ||||||||||||||||| ||||||||
Sbjct: 701 attttccaaagattacagtatataatgaatatttattttattcaggatgggtaatgattg 760


Query: 750 attcaa 755
||||||
Sbjct: 761 attcaa 766


Score = 36.2 bits (18), Expect = 0.090
Identities = 39/46 (84%)
Strand = Plus / Plus


Query: 1168 aacaagaggcgatatttatttaacatctacagcgatttattcatca 1213
||||||||| ||||| |||||||| || | ||| |||||||||||
Sbjct: 1176 aacaagaggtgatatctatttaacttcaatggcggtttattcatca 1221


Score = 36.2 bits (18), Expect = 0.090
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 169 agattcatattatccagatgtgtgta 194
||||| ||||||||||||||| ||||
Sbjct: 235 agatttatattatccagatgtttgta 260


Score = 30.2 bits (15), Expect = 5.5
Identities = 24/27 (88%)
Strand = Plus / Plus


Query: 282 taacaaagggttcacatatgacattgg 308
||||||||||| | ||||||||||||
Sbjct: 348 taacaaagggtgccaatatgacattgg 374


>Contig-U11254-1 (Contig-U11254-1Q) /CSM_Contig/Contig-U11254-1Q.Seq.d
Length = 1346

Score = 40.1 bits (20), Expect = 0.006
Identities = 47/56 (83%)
Strand = Plus / Plus


Query: 690 attttccaatggttacagtatttaatatatattcattttattcaggatgggcaatg 745
||||||||| | ||||| |||||| || ||| ||||||||||||| ||| |||||
Sbjct: 720 attttccaaagattacaatatttagtaattatccattttattcaggttggtcaatg 775


Score = 36.2 bits (18), Expect = 0.090
Identities = 33/38 (86%)
Strand = Plus / Plus


Query: 981 atcaaatccaattatttttcactcaccaaccaattgat 1018
||||||| ||||||||||| | || ||||||||||||
Sbjct: 1020 atcaaattcaattattttttatacatcaaccaattgat 1057


Score = 30.2 bits (15), Expect = 5.5
Identities = 24/27 (88%)
Strand = Plus / Plus


Query: 779 gatggtaatatatttaaaaaaggttgt 805
||||||||| ||| ||||||||||||
Sbjct: 809 gatggtaattcattcaaaaaaggttgt 835


Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 428 cctggtggtaatttt 442
|||||||||||||||
Sbjct: 469 cctggtggtaatttt 483


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,257
Number of Sequences: 6905
Number of extensions: 24257
Number of successful extensions: 2656
Number of sequences better than 10.0: 273
length of query: 1266
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1250
effective length of database: 5,564,391
effective search space: 6955488750
effective search space used: 6955488750
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 1
Homology vs DNA
Query= Contig-U12533-1 (Contig-U12533-1Q) /CSM_Contig/Contig-U12533-1Q.Seq.d
(1266 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ396954) Dictyostelium discoideum cDNA clone:dds44f14, 5' ... 1116 0.0 2
(BJ425307) Dictyostelium discoideum cDNA clone:ddv55f11, 5' ... 1066 0.0 2
(BJ444122) Dictyostelium discoideum cDNA clone:ddv55f11, 3' ... 918 0.0 2
(BJ409148) Dictyostelium discoideum cDNA clone:dds39g14, 3' ... 910 0.0 3
(BJ395625) Dictyostelium discoideum cDNA clone:dds39g14, 5' ... 906 0.0 2
(BJ438285) Dictyostelium discoideum cDNA clone:ddv36p19, 3' ... 416 e-129 3
(BJ405204) Dictyostelium discoideum cDNA clone:dds30m23, 3' ... 416 e-129 3
(BJ349666) Dictyostelium discoideum cDNA clone:dda37c09, 3' ... 40 2e-08 5
(EF587366) Oedogonium cardiacum strain SAG 575-1b RNA polyme... 56 6e-04 2
(BX248583) Blochmannia floridanus complete genome. 40 8e-04 17
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas... 56 0.003 1
(AL844506) Plasmodium falciparum chromosome 7. 36 0.004 16
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 36 0.012 17
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.039 9
(AC007494) Homo sapiens chromosome 16 clone RP11-329J18, com... 52 0.052 1
(AC027467) Homo sapiens chromosome 15 clone RP11-215M5 map 1... 52 0.052 1
(AI651893) wb64b10.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I... 52 0.052 1
(EK043670) 1092959537131 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.055 2
(ER556887) 1092351559034 Global-Ocean-Sampling_GS-36-01-01-2... 42 0.064 2
(CP000361) Arcobacter butzleri RM4018, complete genome. 38 0.065 18
(EK047431) 1092959645841 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.065 2
(EK339056) 1095467053519 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.079 2
(DH069985) Oryzias latipes Fosmid clone:GOLWFno130_a20, reve... 34 0.093 3
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.093 13
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.11 11
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 34 0.11 12
(Z98551) Plasmodium falciparum MAL3P6. 32 0.11 10
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 34 0.12 2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 0.16 9
(EU849490) Gonystylus bancanus chloroplast, partial genome. 42 0.19 4
(AM482977) Vitis vinifera contig VV78X020187.3, whole genome... 50 0.21 1
(AC193303) Sorex araneus clone SA_Ba-476B14, WORKING DRAFT S... 50 0.21 1
(AC172730) Sorex araneus clone SA_Ba-209P7, WORKING DRAFT SE... 50 0.21 1
(ER389704) 1094428790621 Global-Ocean-Sampling_GS-34-01-01-1... 50 0.21 1
(CK853210) 13944 Stolon Solanum tuberosum cDNA, mRNA sequence. 50 0.21 1
(CO729917) Hm_pupb_14H08_pBACe3.6_t7 Heliconius melpomene pu... 40 0.21 3
(AM624239) Entamoeba dispar GSS, clone dispar108a02.q1k. 46 0.21 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 0.26 16
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.28 15
(AM444346) Vitis vinifera contig VV78X052782.2, whole genome... 32 0.29 4
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.30 15
(AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 0.33 13
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 0.35 13
(AY429682) Dictyostelium discoideum dusty protein kinase mRN... 36 0.42 4
(BH984388) ode98h10.b1 B.oleracea002 Brassica oleracea genom... 40 0.43 3
(BH972563) odh12c04.g1 B.oleracea002 Brassica oleracea genom... 40 0.43 3
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 42 0.45 9
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 0.47 11
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 34 0.49 14
(AY429683) Dictyostelium discoideum dusty protein kinase gen... 36 0.52 4
(AM489089) Vitis vinifera contig VV78X069515.3, whole genome... 36 0.53 2
(AM428814) Vitis vinifera contig VV78X216686.4, whole genome... 36 0.53 2
(AA881572) vx20d03.r1 Soares_thymus_2NbMT Mus musculus cDNA ... 36 0.54 3
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 0.55 16
(AB253417) Apis mellifera hbg3 gene for alpha-glucosidase, e... 36 0.59 6
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 0.62 12
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 0.70 15
(AP008075) Lotus japonicus genomic DNA, clone:LjB08F07, BM1431. 38 0.71 5
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 34 0.76 16
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 32 0.77 11
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 32 0.78 11
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 0.79 9
(AC169038) Mus musculus BAC clone RP23-31H24 from chromosome... 48 0.82 1
(AC120153) Mus musculus chromosome 14, clone RP24-251C20, co... 48 0.82 1
(AL159159) Human DNA sequence from clone RP11-88J11 on chrom... 48 0.82 1
(AC213586) Solanum tuberosum chromosome 6 clone RHPOTKEY075F... 48 0.82 1
(AC174022) Bos taurus clone CH240-92O8, WORKING DRAFT SEQUEN... 48 0.82 1
(FH635839) CHO_OF4564xc10f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.82 1
(FH628874) CHO_OF4553xe02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.82 1
(FH131242) CHO_OF3489xo16r1.ab1 CHO_OF3 Nicotiana tabacum ge... 48 0.82 1
(CA760194) BR060007A20D04.ab1 IRRI clones Oryza sativa Indic... 48 0.82 1
(BX928032) Oryza sativa cDNA clone:p826h06p3. 48 0.82 1
(DV068356) UGS01_16_D18.x1 FH UGS01 Mus musculus cDNA clone ... 40 0.85 2
(AC110079) Homo sapiens BAC clone RP11-384K6 from 4, complet... 44 0.88 5
(AM462249) Vitis vinifera, whole genome shotgun sequence, co... 34 0.97 6
(DU908908) 368335 Tomato EcoRI BAC Library Solanum lycopersi... 38 1.1 2
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 32 1.1 2
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 32 1.2 2
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN... 32 1.2 2
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 34 1.2 5
(AC190230) Pan troglodytes BAC clone CH251-734F1 from chromo... 34 1.4 5
(AC138454) Oryza sativa (japonica cultivar-group) chromosome... 32 1.7 2
(AC087544) Oryza sativa Japonica Group chromosome 10 clone n... 32 1.7 2
(AP005285) Oryza sativa Japonica Group genomic DNA, chromoso... 32 1.7 2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 34 1.7 10
(AC196914) Dasypus novemcinctus clone VMRC5-132B20, complete... 36 1.7 2
(EA680674) Sequence 59553 from patent US 7365185. 32 1.9 2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 1.9 13
(AC099106) Rattus norvegicus clone CH230-181A13, *** SEQUENC... 34 1.9 7
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 32 2.0 12
(EA625916) Sequence 4795 from patent US 7365185. 32 2.1 2
(AC195445) Spermophilus tridecemlineatus clone VMRC20-337D9,... 36 2.1 5
(BH234920) MHAA_C03.y Spiroplasma kunkelii H Spiroplasma kun... 38 2.1 2
(AC177006) Strongylocentrotus purpuratus clone R3-37D23, WOR... 34 2.2 5
(CL838505) OR_CBa0064J04.f OR_CBa Oryza rufipogon genomic cl... 32 2.2 2
(EI241535) OR__Ba0040J21.f OR__Ba Oryza rufipogon genomic cl... 32 2.2 2
(AQ292032) nbxb0041E21r CUGI Rice BAC Library Oryza sativa J... 32 2.2 2
(FF675872) G826P569RD7.T0 Acorn worm normalized juvenile pEx... 36 2.2 2
(FF481307) G613P6313RC6.T0 Acorn worm blastula/gastrula pCMV... 36 2.2 2
(AV556336) Arabidopsis thaliana cDNA clone:SQ040e10F, 3' end. 32 2.3 2

>(BJ396954) Dictyostelium discoideum cDNA clone:dds44f14, 5' end,
single read.
Length = 615

Score = 1116 bits (563), Expect(2) = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus


Query: 40 aatatgcctagttatcaactctttctctaattgtagtcttttggttgctccagatggtta 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 aatatgcctagttatcaactctttctctaattgtagtcttttggttgctccagatggtta 112


Query: 100 ttataacatttaccgagaaaataaaattgaaaatattttaaatttaaaaccaaatggtaa 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttataacatttaccgagaaaataaaattgaaaatattttaaatttaaaaccaaatggtaa 172


Query: 160 caaatcacaagattcatattatccagatgtgtgtagtaaagcggtaaaaaataaagaagg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 caaatcacaagattcatattatccagatgtgtgtagtaaagcggtaaaaaataaagaagg 232


Query: 220 tgtaaaaagttttatcttatcttcattccctctttcaactaaagagtatgctaacgttat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tgtaaaaagttttatcttatcttcattccctctttcaactaaagagtatgctaacgttat 292


Query: 280 tgtaacaaagggttcacatatgacattgggtgatggagaatatcatcaaatatttaatat 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgtaacaaagggttcacatatgacattgggtgatggagaatatcatcaaatatttaatat 352


Query: 340 caatagatttttgaatatagtttgtgttgagggttcacttgtatttagtacaaaagatgt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 caatagatttttgaatatagtttgtgttgagggttcacttgtatttagtacaaaagatgt 412


Query: 400 tgtatatatgagtgcgttggtaatattacctggtggtaattttgaatgtatagattgcac 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgtatatatgagtgcgttggtaatattacctggtggtaattttgaatgtatagattgcac 472


Query: 460 catcaaatttcgagatctatatccaaccaactcattaattgacccatttggttttttacc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 catcaaatttcgagatctatatccaaccaactcattaattgacccatttggttttttacc 532


Query: 520 tggaattattactttgggaggttcattatctcttttaggaaagcaaaaaactgtgtatag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tggaattattactttgggaggttcattatctcttttaggaaagcaaaaaactgtgtatag 592


Query: 580 tgcagttttaatagatgaaaata 602
|||||||||||||||||||||||
Sbjct: 593 tgcagttttaatagatgaaaata 615

Score = 36.2 bits (18), Expect(2) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 11 atgaaattagaacaaagg 28
||||||||||||||||||
Sbjct: 23 atgaaattagaacaaagg 40

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,574,058,812
Number of extensions: 102712312
Number of successful extensions: 8754473
Number of sequences better than 10.0: 288
Length of query: 1266
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1242
Effective length of database: 97,308,875,965
Effective search space: 120857623948530
Effective search space used: 120857623948530
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12533-1 (Contig-U12533-1Q) /CSM_Contig/Contig-U12533-1Q.Seq.d
(1266 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54MK0) RecName: Full=Growth-differentiation transition protein... 223 1e-56
(Q55CZ1) RecName: Full=Probable serine/threonine-protein kinase ... 210 1e-52
(Q55CY9) RecName: Full=Probable serine/threonine-protein kinase ... 174 6e-42
AJ279060_1(AJ279060|pid:none) Dictyostelium discoideum gdt1 gene... 133 1e-29
(Q54XS3) RecName: Full=Probable inactive serine/threonine-protei... 133 1e-29
AJ000992_1(AJ000992|pid:none) Dictyostelium discoideum gdt1 gene. 133 1e-29
AJ548424_1(AJ548424|pid:none) Lactobacillus johnsonii partial cs... 36 2.6
AE017198_794(AE017198|pid:none) Lactobacillus johnsonii NCC 533,... 36 2.6
CP000568_41(CP000568|pid:none) Clostridium thermocellum ATCC 274... 35 7.5
AE014188_134(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 34 9.8

>(Q54MK0) RecName: Full=Growth-differentiation transition protein 5;
Flags: Precursor;
Length = 1176

Score = 223 bits (568), Expect = 1e-56
Identities = 111/198 (56%), Positives = 145/198 (73%), Gaps = 1/198 (0%)
Frame = +2

Query: 623 GSFNVRVTLSLTKSLDNIIFQVYFPMVTVFNIYSFYSGWAMIDSNI-EKEIIIDGNIFKK 799
GS NVRV + + S D ++ + FP +TV Y+FYSGW+M + ++ ++ I++G++F+
Sbjct: 691 GSANVRVQIKNSLSSD-YLYIIDFPQITVLKTYTFYSGWSMANPDLANQQFIVNGSLFQS 749

Query: 800 GCQQQVLGNCTISTNSKLITGLPSVTESDKLNRLFSSGITSINPYEPVTITIPIDKESKK 979
GCQ + NCTIS NS + LP+VT SD+LN LFSSG+TS+N EPV IT I+ S
Sbjct: 750 GCQTKTDSNCTISENSNYVPNLPNVTSSDELNSLFSSGVTSLNSNEPVIITTAINSNSTI 809

Query: 980 NQIQLFFTHQPIDIETSLLSIYVENQPIFLLEPLQSNLDSTFKNLTFHYENSKSLEKIKI 1159
+QIQLFFTH PID SLLS+Y++NQP+++LEPLQSN TFKN+TF YEN+ SLEKI I
Sbjct: 810 SQIQLFFTHVPIDQHASLLSVYIDNQPVYVLEPLQSNQGPTFKNITFKYENTNSLEKINI 869

Query: 1160 TFITRGDIYLTSTAIYSS 1213
F TRGDIYLTS AIYSS
Sbjct: 870 AFTTRGDIYLTSMAIYSS 887

Score = 43.5 bits (101), Expect = 0.016
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 14/204 (6%)
Frame = +2

Query: 29 IFFLICLVINSFSNCSLLVAPDGYYNIYRENKIENILNLKPNGNKSQDS--YYPDVCSKA 202
+ FL ++ S ++ + P GYY + R + + N++ N D+ YYPD+C+ A
Sbjct: 13 LIFLSIFILYSNADEETITTPPGYYGLKRIKRFPHS-NIESNNISQTDADLYYPDICAGA 71

Query: 203 VKNKEGVKSFILSSFPLSTKEYANVIVTKGSHMTLGDGEYHQIFNINRFLNIVCVEGSLV 382
+ N EG + +++TL N+FL
Sbjct: 72 LPNAEG--------------DLMTFYTFLDANLTL-----------NKFL---------- 96

Query: 383 FSTKDVVY---MSALVILPGGNFECIDCTIKFRDLYPTNSL---------IDPFGFLPXX 526
TK+ +Y + +LVILPGG+ I + F L NSL +DP G+ P
Sbjct: 97 -ITKESIYSFMVHSLVILPGGSV-TIKRGLLFFSLEEYNSLNIINPAKFPLDPMGYFPGI 154

Query: 527 XXXXXXXXXXXKQKTVYSAVLIDE 598
+YSA ++ +
Sbjct: 155 LALGGSLTLIGNYPLIYSAQVLSK 178

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,958,468,954
Number of extensions: 41222985
Number of successful extensions: 110042
Number of sequences better than 10.0: 10
Number of HSP's gapped: 109995
Number of HSP's successfully gapped: 19
Length of query: 422
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 291
Effective length of database: 627,191,635
Effective search space: 182512765785
Effective search space used: 182512765785
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.00 gvh: 0.73 alm: 0.34 top: 0.23 tms: 0.00 mit: 0.27 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: extracellular, including cell wall
16.0 %: cytoplasmic
12.0 %: endoplasmic reticulum
8.0 %: vacuolar
8.0 %: nuclear
4.0 %: mitochondrial

>> prediction for Contig-U12533-1 is exc

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0