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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12532-1
Contig ID Contig-U12532-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12532-1 (Contig-U12532-1Q) /CSM_Contig/Contig-U12532-1Q.Seq.d
AAATAATTAAAAGAATGAAATATTTGGTTACTATATTTTTATTATTTATT
TTGTTCTCAATAATTAAATGTCAACCTCCAAGATGTTTATACAGTGATAT
TTATGCAAAATCACCACACCCAAACTTAAAACCCTCTGTAAATTATGTTA
ATTGGTGGATTTATGAACATTTTAATGATGCTGGTTATGGTGGTTCATCT
TTTTATACAGATAGTAATTTAAAGGACCTAAATGAAAAAATTTTTGAATT
GAGCGATTATAATATGAGAGATCAAAACCAGGTATCTCCAATTACTCAAA
CATTCAGTCAAGTGAATGATCTTCTATTTTCAAGTATTTCTTACAATAAT
GCTTTTGATGACGATTACTCAAAAGGAAGTGCACATGAAAAAGGATTTTT
TATTTGGAACGAACAAGGTGGTATTCATGTTATTCATAGTATTCCAAAAA
CACCTCAAAAAATGAATGATTTCTTTTTACATACCTCCAAAGATAATTAT
TTACAACATTCAATTTGTATTACATTGTCACAAGCTGAATTAGATATTAT
TCCTAAATATTTGATTTATACCAACCCTGCAATTGCGACAATAAATTCTA
AAAAGATTACTGGTTCANNNNNNNNN----------CATTAGTAGGTTAT
AAAACTGAGGCAATTTCAATTGATGTTTTCCCAAGTGTAAAAGATAAAGT
ACATATATGTCTACAATCATCCCAATGTCCGTATGAATTATCAGCTAAAT
CTAATATCATTTCAAATATTAATCTTATTGTTACTCCTTATCAATTAAAC
TCAGAATCAGAACCTGTTATGACAATTTCCTCCAATGCAAACCCTGCTAT
TTCTGTTTCACAAGTATTGAAGAATAATTATTTCTCTTCTATGGCCACTG
AAAAAATAATTCAACTAAATGGTAATAATTTTGGAGTTTATTTACAAAAG
ACTCAACAAACTCTAGGTGATTTTAAATTTAAATTTCCACAATCAAGTAT
CAATACCCCTTGTACTATTTCACCAATAGGTAGTAATATTATTTCAATTA
TGTTTCATGAAACTTGTGTTGATCAACTTATATTTTGCTTATTTAGTCAT
TTCCACATGTATTCAATTAATAATATACCAGTGTTTATGGTAGATGACCA
AGCTTCATTTTATAATGATGTTACCCAAATTCTTAATGAATTCTTTCCAA
ACATTCCAGATATCAGTAGATGTGTTGAACAACCACCTTCGCCTGGAACT
GCAATGACTGATAACGATGAAATTGAGAATTGATGGGATCTCAGGCC
Gap gap included
Contig length 1287
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 422024
End point 423303
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U12532
List of clone(s) 

est1=VHM293F,1,617
est2=VHM293Z,618,1279
est3=VFG853Z,719,1279
Translated Amino Acid sequence 
IIKRMKYLVTIFLLFILFSIIKCQPPRCLYSDIYAKSPHPNLKPSVNYVNWWIYEHFNDA
GYGGSSFYTDSNLKDLNEKIFELSDYNMRDQNQVSPITQTFSQVNDLLFSSISYNNAFDD
DYSKGSAHEKGFFIWNEQGGIHVIHSIPKTPQKMNDFFLHTSKDNYLQHSICITLSQAEL
DIIPKYLIYTNPAIATINSKKITGSXXX---

---LVGYKTEAISIDVFPSVKDKVHICLQSSQCPYELSAKSNIISNINLIVTPYQLNSES
EPVMTISSNANPAISVSQVLKNNYFSSMATEKIIQLNGNNFGVYLQKTQQTLGDFKFKFP
QSSINTPCTISPIGSNIISIMFHETCVDQLIFCLFSHFHMYSINNIPVFMVDDQASFYND
VTQILNEFFPNIPDISRCVEQPPSPGTAMTDNDEIEN*wdlr
Translated Amino Acid sequence (All Frames) 
Frame A:
k*lke*niwllyfyylfcsq*lnvnlqdvytvifmqnhhtqt*npl*imliggfmnilmm
lvmvvhlfiqivi*rt*mkkfln*aiii*eiktrylqllkhsvk*mifyfqvfltimllm
titqkevhmkkdflfgtnkvvfmlfivfqkhlkk*misfyippkiiiyniqfvlhchkln
*ilflni*fiptlqlrq*ilkrllvxxx---

---h**viklrqfqlmfsqv*kikyiyvynhpnvrmnyqlnlisfqililllllin*tqn
qnll*qfppmqtllflfhky*riiisllwplkk*fn*mviilefiykrlnkl*vilnlnf
hnqvsiplvlfhq*vvilfqlcfmklvlinlyfaylvistciqliiyqclw*mtklhfim
mlpkflmnsfqtfqisvdvlnnhlrlelq*litmklridgisg

Frame B:
nn*kneifgyyifiiyfvlnn*mstskmfiq*ylckittpklktlcklc*lvdl*tf**c
wlwwfiflyr**fkgpk*knf*ierl*yerskpgisnysniqsse*ssifkyflq*cf**
rllkrkct*krifylertrwyscys*yskntskne*flftylqr*lfttfnlyyivts*i
ryys*ifdlyqpcncdnkf*kdywfxxx---

---isrl*n*gnfn*cfpkckr*stymstiipmsv*iis*i*yhfky*sycyslsiklri
rtcydnflqckpcyfcftsiee*lflfygh*knnstkw**fwslftkdstnsr*f*i*is
tikyqyplyyftnr**yyfnyvs*nlc*styilli*sfphvfn**ytsvygr*psfil**
cypns**ilskhsryq*mc*tttfawncnd**r*n*elmgsqa

Frame C:
IIKRMKYLVTIFLLFILFSIIKCQPPRCLYSDIYAKSPHPNLKPSVNYVNWWIYEHFNDA
GYGGSSFYTDSNLKDLNEKIFELSDYNMRDQNQVSPITQTFSQVNDLLFSSISYNNAFDD
DYSKGSAHEKGFFIWNEQGGIHVIHSIPKTPQKMNDFFLHTSKDNYLQHSICITLSQAEL
DIIPKYLIYTNPAIATINSKKITGSXXX---

---LVGYKTEAISIDVFPSVKDKVHICLQSSQCPYELSAKSNIISNINLIVTPYQLNSES
EPVMTISSNANPAISVSQVLKNNYFSSMATEKIIQLNGNNFGVYLQKTQQTLGDFKFKFP
QSSINTPCTISPIGSNIISIMFHETCVDQLIFCLFSHFHMYSINNIPVFMVDDQASFYND
VTQILNEFFPNIPDISRCVEQPPSPGTAMTDNDEIEN*wdlr
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12532-1 (Contig-U12532-1Q)
/CSM_Contig/Contig-U12532-1Q.Seq.d
         (1297 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12532-1 (Contig-U12532-1Q) /CSM_Contig/Conti...  1310  0.0
Contig-U11437-1 (Contig-U11437-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14132-1 (Contig-U14132-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14316-1 (Contig-U14316-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11052-1 (Contig-U11052-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U08797-1 (Contig-U08797-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U08770-1 (Contig-U08770-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U07944-1 (Contig-U07944-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U01854-1 (Contig-U01854-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U14384-1 (Contig-U14384-1Q) /CSM_Contig/Conti...    36  0.092

>Contig-U12532-1 (Contig-U12532-1Q) /CSM_Contig/Contig-U12532-1Q.Seq.d
          Length = 1297

 Score = 1310 bits (661), Expect = 0.0
 Identities = 661/661 (100%)
 Strand = Plus / Plus

                                                                        
Query: 637  cattagtaggttataaaactgaggcaatttcaattgatgttttcccaagtgtaaaagata 696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637  cattagtaggttataaaactgaggcaatttcaattgatgttttcccaagtgtaaaagata 696

                                                                        
Query: 697  aagtacatatatgtctacaatcatcccaatgtccgtatgaattatcagctaaatctaata 756
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  aagtacatatatgtctacaatcatcccaatgtccgtatgaattatcagctaaatctaata 756

                                                                        
Query: 757  tcatttcaaatattaatcttattgttactccttatcaattaaactcagaatcagaacctg 816
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  tcatttcaaatattaatcttattgttactccttatcaattaaactcagaatcagaacctg 816

                                                                        
Query: 817  ttatgacaatttcctccaatgcaaaccctgctatttctgtttcacaagtattgaagaata 876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  ttatgacaatttcctccaatgcaaaccctgctatttctgtttcacaagtattgaagaata 876

                                                                        
Query: 877  attatttctcttctatggccactgaaaaaataattcaactaaatggtaataattttggag 936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  attatttctcttctatggccactgaaaaaataattcaactaaatggtaataattttggag 936

                                                                        
Query: 937  tttatttacaaaagactcaacaaactctaggtgattttaaatttaaatttccacaatcaa 996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  tttatttacaaaagactcaacaaactctaggtgattttaaatttaaatttccacaatcaa 996

                                                                        
Query: 997  gtatcaataccccttgtactatttcaccaataggtagtaatattatttcaattatgtttc 1056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  gtatcaataccccttgtactatttcaccaataggtagtaatattatttcaattatgtttc 1056

                                                                        
Query: 1057 atgaaacttgtgttgatcaacttatattttgcttatttagtcatttccacatgtattcaa 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 atgaaacttgtgttgatcaacttatattttgcttatttagtcatttccacatgtattcaa 1116

                                                                        
Query: 1117 ttaataatataccagtgtttatggtagatgaccaagcttcattttataatgatgttaccc 1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 ttaataatataccagtgtttatggtagatgaccaagcttcattttataatgatgttaccc 1176

                                                                        
Query: 1177 aaattcttaatgaattctttccaaacattccagatatcagtagatgtgttgaacaaccac 1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 aaattcttaatgaattctttccaaacattccagatatcagtagatgtgttgaacaaccac 1236

                                                                        
Query: 1237 cttcgcctggaactgcaatgactgataacgatgaaattgagaattgatgggatctcaggc 1296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 cttcgcctggaactgcaatgactgataacgatgaaattgagaattgatgggatctcaggc 1296

             
Query: 1297 c 1297
            |
Sbjct: 1297 c 1297


 Score = 1223 bits (617), Expect = 0.0
 Identities = 617/617 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataattaaaagaatgaaatatttggttactatatttttattatttattttgttctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaataattaaaagaatgaaatatttggttactatatttttattatttattttgttctcaa 60

                                                                       
Query: 61  taattaaatgtcaacctccaagatgtttatacagtgatatttatgcaaaatcaccacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taattaaatgtcaacctccaagatgtttatacagtgatatttatgcaaaatcaccacacc 120

                                                                       
Query: 121 caaacttaaaaccctctgtaaattatgttaattggtggatttatgaacattttaatgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaacttaaaaccctctgtaaattatgttaattggtggatttatgaacattttaatgatg 180

                                                                       
Query: 181 ctggttatggtggttcatctttttatacagatagtaatttaaaggacctaaatgaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctggttatggtggttcatctttttatacagatagtaatttaaaggacctaaatgaaaaaa 240

                                                                       
Query: 241 tttttgaattgagcgattataatatgagagatcaaaaccaggtatctccaattactcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttttgaattgagcgattataatatgagagatcaaaaccaggtatctccaattactcaaa 300

                                                                       
Query: 301 cattcagtcaagtgaatgatcttctattttcaagtatttcttacaataatgcttttgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cattcagtcaagtgaatgatcttctattttcaagtatttcttacaataatgcttttgatg 360

                                                                       
Query: 361 acgattactcaaaaggaagtgcacatgaaaaaggattttttatttggaacgaacaaggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acgattactcaaaaggaagtgcacatgaaaaaggattttttatttggaacgaacaaggtg 420

                                                                       
Query: 421 gtattcatgttattcatagtattccaaaaacacctcaaaaaatgaatgatttctttttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtattcatgttattcatagtattccaaaaacacctcaaaaaatgaatgatttctttttac 480

                                                                       
Query: 481 atacctccaaagataattatttacaacattcaatttgtattacattgtcacaagctgaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atacctccaaagataattatttacaacattcaatttgtattacattgtcacaagctgaat 540

                                                                       
Query: 541 tagatattattcctaaatatttgatttataccaaccctgcaattgcgacaataaattcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagatattattcctaaatatttgatttataccaaccctgcaattgcgacaataaattcta 600

                            
Query: 601 aaaagattactggttca 617
           |||||||||||||||||
Sbjct: 601 aaaagattactggttca 617


>Contig-U11437-1 (Contig-U11437-1Q) /CSM_Contig/Contig-U11437-1Q.Seq.d
          Length = 1384

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 746 taaatctaatatcatttcaaa 766
           |||||||||||||||||||||
Sbjct: 17  taaatctaatatcatttcaaa 37


>Contig-U14132-1 (Contig-U14132-1Q) /CSM_Contig/Contig-U14132-1Q.Seq.d
          Length = 124

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 35 atttttattatttattttgt 54
          ||||||||||||||||||||
Sbjct: 31 atttttattatttattttgt 50


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,388
Number of Sequences: 6905
Number of extensions: 25388
Number of successful extensions: 3321
Number of sequences better than 10.0: 431
length of query: 1297
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1281
effective length of database: 5,564,391
effective search space: 7127984871
effective search space used: 7127984871
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 1
Homology vs DNA 
Query= Contig-U12532-1 (Contig-U12532-1Q) /CSM_Contig/Contig-U12532-1Q.Seq.d
         (1297 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ425482) Dictyostelium discoideum cDNA clone:ddv55i24, 5' ...  1223   0.0    1
(BJ444282) Dictyostelium discoideum cDNA clone:ddv55i24, 3' ...  1221   0.0    2
(BJ431562) Dictyostelium discoideum cDNA clone:ddv14j14, 3' ...  1110   0.0    1
(BJ329362) Dictyostelium discoideum cDNA clone:dda24p13, 5' ...  1096   0.0    1
(BJ421979) Dictyostelium discoideum cDNA clone:ddv44o07, 5' ...    56   0.003  1
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.005  19
(CU928110) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.006  9
(AC189673) Trichinella spiralis BAC clone TS195-25H12 from c...    40   0.009  7
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    38   0.044  20
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   0.056  16
(EK465515) 1095469420752 Global-Ocean-Sampling_GS-32-01-01-1...    40   0.066  2
(EK469605) 1095469442833 Global-Ocean-Sampling_GS-32-01-01-1...    40   0.066  2
(AC007428) Homo sapiens, clone RP11-69A1, complete sequence.       36   0.095  9
(AC226459) Chlorocebus aethiops clone CH252-286E4, WORKING D...    34   0.11   9
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.11   13
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    38   0.12   17
(AC126207) Rattus norvegicus clone CH230-284B4, WORKING DRAF...    50   0.14   9
(AC099441) Rattus norvegicus clone CH230-156G5, WORKING DRAF...    50   0.21   1
(DH767244) Rattus norvegicus DNA, BAC clone: RNB1-350N21, 3'...    50   0.21   1
(DH551125) Rattus norvegicus DNA, BAC clone: RNB1-059I17, 3'...    50   0.21   1
(AX344552) Sequence 3 from Patent WO0200932.                       34   0.22   12
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ...    40   0.22   9
(EK074510) 1092961021353 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.23   2
(AC149122) Papio anubis clone RP41-70P1, WORKING DRAFT SEQUE...    34   0.30   8
(AC217248) Solanum lycopersicum chromosome 12 clone LE_HBa-3...    34   0.34   9
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    32   0.38   13
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   0.40   12
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.61   18
(AC136227) Oryza sativa Japonica Group chromosome 5 clone OS...    46   0.70   3
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    34   0.74   16
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.79   15
(AC105586) Rattus norvegicus 3 BAC CH230-239D4 (Children's H...    48   0.84   1
(AC147049) Pan troglodytes BAC clone RP43-131M1 from chromos...    48   0.84   1
(AC145856) Pan troglodytes BAC clone RP43-5P12 from chromoso...    48   0.84   1
(AC004901) Homo sapiens PAC clone RP5-817I18 from 7, complet...    48   0.84   1
(AC156229) Bos taurus clone CH240-47H20, WORKING DRAFT SEQUE...    48   0.84   1
(AC199005) Zea mays chromosome 5 clone ZMMBBb-54J14; ZMMBBb0...    48   0.84   1
(FH474030) CHO_OF4986xb18r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.84   1
(BZ534845) OGALW64TM ZM2_0.7_1.5_KB Zea mays genomic clone Z...    48   0.84   1
(BZ534836) OGALW64TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    48   0.84   1
(DC229516) Plasmodium berghei strain ANKA cDNA clone:SG01573...    48   0.84   1
(DC227022) Plasmodium berghei strain ANKA cDNA clone:SG00770...    48   0.84   1
(BB970545) Plasmodium berghei strain ANKA cDNA clone:OK00018...    48   0.84   1
(AL442643) Human DNA sequence from clone RP11-564H19 on chro...    38   0.96   8
(AL034559) Plasmodium falciparum MAL3P7.                           36   0.97   12
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    34   1.1    13
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   1.1    13
(AX458489) Sequence 35 from Patent WO0246454.                      34   1.4    6
(AC020044) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    42   1.4    3
(AL139186) Human DNA sequence from clone RP11-76N11 on chrom...    36   1.4    7
(BX465849) Zebrafish DNA sequence from clone DKEY-263L8 in l...    40   1.4    4
(CU207246) Zebrafish DNA sequence from clone DKEY-283J8 in l...    34   1.5    7
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    36   1.5    9
(AC190805) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    46   1.5    5
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   1.6    18
(AC146773) Didelphis virginiana clone LB3-175O22, WORKING DR...    32   1.6    10
(AL805938) Mouse DNA sequence from clone RP23-248L9 on chrom...    38   1.6    6
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   1.7    13
(AC185354) Populus trichocarpa clone Pop1-100B1, complete se...    32   1.7    9
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   2.0    11
(BX936324) Zebrafish DNA sequence from clone CH211-74F16 in ...    38   2.0    6
(CP000361) Arcobacter butzleri RM4018, complete genome.            40   2.0    21
(BX511249) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    38   2.1    7
(AX392733) Sequence 23 from Patent WO0212526.                      32   2.1    5
(AR707080) Sequence 23 from patent US 6933145.                     32   2.1    5
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    38   2.2    8
(EK362402) 1095469168572 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.2    3
(AC026533) Homo sapiens clone RP11-230J8, WORKING DRAFT SEQU...    36   2.3    8
(AC129623) Homo sapiens 12 BAC CTD-2107C6 (Cal Tech Human BA...    32   2.5    8
(EK121532) 1092963535476 Global-Ocean-Sampling_GS-31-01-01-1...    32   2.5    3
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    38   2.6    20
(FF437343) G142P60216RB6.T0 Acorn worm juvenile pCMVSport6 l...    40   2.6    2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   2.6    13
(BX470189) Zebrafish DNA sequence from clone DKEY-195M1 in l...    36   2.7    7
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    36   2.7    15
(BX510989) Zebrafish DNA sequence from clone CH211-76L23 in ...    36   2.8    6
(BX897681) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.0    8
(CU019556) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.1    8
(AX346975) Sequence 2046 from Patent WO0200928.                    32   3.1    8
(AM633225) Entamoeba dispar GSS, clone dispar99d12.q1k.            38   3.3    2
(CR853297) Zebrafish DNA sequence from clone DKEYP-118B3 in ...    46   3.3    1
(AC170767) Rhesus Macaque  BAC CH250-103N10 () complete sequ...    46   3.3    1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN...    46   3.3    1
(AM459690) Vitis vinifera contig VV78X259333.6, whole genome...    46   3.3    1
(AC136224) Oryza sativa Japonica Group chromosome 5 clone OS...    46   3.3    1
(EA678952) Sequence 57831 from patent US 7365185.                  46   3.3    1
(CU856076) H.melpomene DNA sequence from clone AEHM-7E22.          46   3.3    1
(CP000225) Drosophila melanogaster genomic scaffold 21100002...    46   3.3    1
(AY556725) Agrodiaetus aroaniensis voucher JC00040 5.8S ribo...    46   3.3    1
(AY556711) Agrodiaetus humedasae voucher MW99605 5.8S riboso...    46   3.3    1
(AY556710) Agrodiaetus humedasae voucher MW99591 5.8S riboso...    46   3.3    1
(AL590117) Human DNA sequence from clone RP11-547C6 on chrom...    46   3.3    1
(AC138315) Homo sapiens 3 BAC RP11-163K7 (Roswell Park Cance...    46   3.3    1
(AC116303) Homo sapiens 3 BAC RP11-276B15 (Roswell Park Canc...    46   3.3    1
(AC068136) Homo sapiens BAC clone RP11-777J1 from 2, complet...    46   3.3    1
(AC160180) Bos taurus clone CH240-88M24, WORKING DRAFT SEQUE...    46   3.3    1
(AC146741) Papio anubis clone RP41-90A4, WORKING DRAFT SEQUE...    46   3.3    1
(CU463289) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU407163) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(AC214882) Pteropus vampyrus clone CH279-38N9, WORKING DRAFT...    46   3.3    1

>(BJ425482) Dictyostelium discoideum cDNA clone:ddv55i24, 5' end,
           single read.
          Length = 617

 Score = 1223 bits (617), Expect = 0.0
 Identities = 617/617 (100%)
 Strand = Plus / Plus


Query: 1   aaataattaaaagaatgaaatatttggttactatatttttattatttattttgttctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaataattaaaagaatgaaatatttggttactatatttttattatttattttgttctcaa 60


Query: 61  taattaaatgtcaacctccaagatgtttatacagtgatatttatgcaaaatcaccacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taattaaatgtcaacctccaagatgtttatacagtgatatttatgcaaaatcaccacacc 120


Query: 121 caaacttaaaaccctctgtaaattatgttaattggtggatttatgaacattttaatgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaacttaaaaccctctgtaaattatgttaattggtggatttatgaacattttaatgatg 180


Query: 181 ctggttatggtggttcatctttttatacagatagtaatttaaaggacctaaatgaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctggttatggtggttcatctttttatacagatagtaatttaaaggacctaaatgaaaaaa 240


Query: 241 tttttgaattgagcgattataatatgagagatcaaaaccaggtatctccaattactcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttttgaattgagcgattataatatgagagatcaaaaccaggtatctccaattactcaaa 300


Query: 301 cattcagtcaagtgaatgatcttctattttcaagtatttcttacaataatgcttttgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cattcagtcaagtgaatgatcttctattttcaagtatttcttacaataatgcttttgatg 360


Query: 361 acgattactcaaaaggaagtgcacatgaaaaaggattttttatttggaacgaacaaggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acgattactcaaaaggaagtgcacatgaaaaaggattttttatttggaacgaacaaggtg 420


Query: 421 gtattcatgttattcatagtattccaaaaacacctcaaaaaatgaatgatttctttttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtattcatgttattcatagtattccaaaaacacctcaaaaaatgaatgatttctttttac 480


Query: 481 atacctccaaagataattatttacaacattcaatttgtattacattgtcacaagctgaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atacctccaaagataattatttacaacattcaatttgtattacattgtcacaagctgaat 540


Query: 541 tagatattattcctaaatatttgatttataccaaccctgcaattgcgacaataaattcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagatattattcctaaatatttgatttataccaaccctgcaattgcgacaataaattcta 600


Query: 601 aaaagattactggttca 617
           |||||||||||||||||
Sbjct: 601 aaaagattactggttca 617

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,781,304,958
Number of extensions: 114326905
Number of successful extensions: 9897241
Number of sequences better than 10.0: 202
Length of query: 1297
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1273
Effective length of database: 97,308,875,965
Effective search space: 123874199103445
Effective search space used: 123874199103445
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12532-1 (Contig-U12532-1Q) /CSM_Contig/Contig-U12532-1Q.Seq.d
         (1297 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK079224_1(AK079224|pid:none) Mus musculus adult male urinary bl...    55   4e-06
(Q9QY48) RecName: Full=Deoxyribonuclease-2-beta;          EC=3.1...    55   4e-06
S40996(S40996)hypothetical protein K04H4.6 - Caenorhabditis eleg...    53   2e-05
(Q9QZK9) RecName: Full=Deoxyribonuclease-2-beta;          EC=3.1...    53   2e-05
AF220525_1(AF220525|pid:none) Caenorhabditis elegans DNAse II ho...    53   2e-05
(P34508) RecName: Full=Cell death-related nuclease 6;          E...    53   2e-05
AY075328_1(AY075328|pid:none) Drosophila melanogaster GH10876 fu...    50   2e-04
AB171736_1(AB171736|pid:none) Macaca fascicularis brain cDNA clo...    45   0.007
AF274571_1(AF274571|pid:none) Homo sapiens deoxyribonuclease II ...    44   0.010
BC126136_1(BC126136|pid:none) Homo sapiens deoxyribonuclease II ...    44   0.010
CR548612_228(CR548612|pid:none) Paramecium tetraurelia macronucl...    42   0.037
(Q9QZK8) RecName: Full=Deoxyribonuclease-2-alpha;          EC=3....    42   0.048
BC088028_1(BC088028|pid:none) Xenopus tropicalis deoxyribonuclea...    41   0.11
(Q17778) RecName: Full=Deoxyribonuclease-2;          EC=3.1.22.1...    41   0.11
EU386771_1(EU386771|pid:none) Synthetic construct recombinant bo...    40   0.14
AF251281_1(AF251281|pid:none) Synthetic construct recombinant bo...    40   0.14
(O62855) RecName: Full=Deoxyribonuclease-2-alpha;          EC=3....    40   0.24
FJ968748_1(FJ968748|pid:none) Clostridium botulinum strain Af84 ...    40   0.24
AY813628_1(AY813628|pid:none) Schistosoma japonicum SJCHGC00967 ...    39   0.41
BT081695_1(BT081695|pid:none) Rana catesbeiana clone rcat-evr-51...    39   0.54
AL844507_107(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.91
AL049862_12(AL049862|pid:none) Arabidopsis thaliana DNA chromoso...    37   1.6
CP001581_1837(CP001581|pid:none) Clostridium botulinum A2 str. K...    37   2.0
CP000939_1740(CP000939|pid:none) Clostridium botulinum B1 str. O...    37   2.0
EU719200_1(EU719200|pid:none) Haliotis cracherodii plancitoxin m...    37   2.0
CP001083_1907(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    36   2.7
FJ752529_1(FJ752529|pid:none) Homo sapiens tissue-type liver deo...    36   2.7
CP000140_3639(CP000140|pid:none) Parabacteroides distasonis ATCC...    36   2.7
FN313713_1(FN313713|pid:none) Schistosoma japonicum isolate Anhu...    35   5.9
T18284(T18284) hypothetical protein G1 - slime mold (Dictyosteli...    35   5.9
AB170812_1(AB170812|pid:none) Macaca fascicularis brain cDNA clo...    35   5.9
AY654590_1(AY654590|pid:none) Escherichia coli O59 O-antigen gen...    35   5.9
AB170800_1(AB170800|pid:none) Macaca fascicularis brain cDNA clo...    35   5.9
FN392321_842(FN392321|pid:none) Pichia pastoris GS115 chromosome...    35   7.7
AC116982_4(AC116982|pid:none) Dictyostelium discoideum chromosom...    35   7.7
CP000553_340(CP000553|pid:none) Prochlorococcus marinus str. NAT...    35   7.8

>AK079224_1(AK079224|pid:none) Mus musculus adult male urinary
           bladder cDNA, RIKEN full-length enriched library,
           clone:9530041E10 product:deoxyribonuclease II beta, full
           insert sequence.
          Length = 354

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
 Frame = +3

Query: 204 YTDSNLKDLNEKIFELSDYNMRDQNQVSPITQTFSQVNDLLFSSISYNNAFDD--DYSKG 377
           Y DS  +  N+ ++ ++         +  +  T +  ND  +  + YN+      +YS+
Sbjct: 61  YLDSTRQTWNKSLYLINSTRSALGKTLQHLYDTHNSTNDTAY--LIYNDGVPGSVNYSRQ 118

Query: 378 SAHEKGFFIWNEQGGIHVIHSIPKTPQKMNDFFLHTSKDNYLQHSICITLSQAELDIIPK 557
             H KG  +WN   G  +IHS+PK P  ++ +   TS   Y Q  ICIT   ++ + I
Sbjct: 119 YGHAKGLLVWNRTQGFWLIHSVPKFP-PVHGYEYPTSGRRYGQTGICITFGYSQFEEIDF 177

Query: 558 YLIYTNPAI 584
            L+   P I
Sbjct: 178 QLLVLQPNI 186

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,030,532,483
Number of extensions: 41606400
Number of successful extensions: 99768
Number of sequences better than 10.0: 36
Number of HSP's gapped: 99700
Number of HSP's successfully gapped: 36
Length of query: 432
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 301
Effective length of database: 627,191,635
Effective search space: 188784682135
Effective search space used: 188784682135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.02  gvh: 0.71  alm: 0.39  top: 0.40  tms: 0.00  mit: 0.41  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: nuclear

>> prediction for Contig-U12532-1 is exc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0