Contig-U12531-1
Contig ID Contig-U12531-1
Contig update 2002.12.18
Contig sequence
>Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Contig-U12531-1Q.Seq.d
AAGAAATAGTCGTTAAAAAGATAGAGGATAAAAAACAAGAAACAGAACCA
TTCAATATTGATGATTTAGATTTAGATGATTTAGATGCACAACTTGATAG
TGTAATAAATGATTACGAAACAACAGAAGTTATAAATATTAAAGATGATT
TTATTAGAATTCAAAATGAAATCTCTAAACAACATTTCGATCGATTTGGT
GCAGATGAATCAATTGTTACAACCTTTAATCCTAATGAACTTCTTCTAAA
GAGGAGAGAGGGAGAAAAAATGGAAGAAGATGAAAATCAAATAGAAGAAC
GTGAAGAAAAAGAAGAATCAGAAGAAGAAGATGATGATGAATCAGAAGAA
GAAGAATCAGAAGAATCAGAAGAAGAAGAAATTGCTGATTATGAAGAATC
AAATGAAATTGAACAAAAATTAGATACAAATCAATTTAATCCACAGGATA
GAAAAGTTTCATTTTTAATTCGTCCTCATGGTGGAAAAGCAAGTAGAAAT
CTTCTTATAAAGACTAATGCTAATATTGATTTGAGAAATTTAATTTGTAA
ATTTAAAGAACATGGTGAAATTAAATCAGTTTATCAAAATATTACAAGAT
CTGGTACAATGCATGTTGTNNNNNNNNN----------NNNNNNNNNNAT
TATAANAATAAAAACTTTGGAATACCACCATTAAATGTTTCNCAACTTTA
CAATAATTCAAAATCATCACCAACTCAAAGTCCAAGATATTCACATGACC
AACAACAACAGCANCAACAACAACATTCATCACAACCAACATCTCCACAT
GTTTCAAAATCTGGTAGTAGCGGTAGTTTTGAAGGANCAGATGATAGTCA
TATTATCAATTTGGATGATATTNGTAGTGGAGTAAATCAAAAAACTACTG
TTATGATTAANAATATTCCATACAAATTCACTCATTTAAATTTAGATACA
ATGTTTAAAAAACATAATTTAGCTTATGATTATTTATATATGCCAACTGA
TCCAATTACAAAGGCACATTATGGATACACTTTCGTTNATTTCGTAAATT
ATCAAGACATCATTCAATTATGTTCACTTTACAATAATAAAAAATTGGGT
AACCATCCAAAGTTTTGTGAAATAACTTATGCAAGACTCCAAGGTTTTCC
TCNNACTTCAGCCNCTGNAGCAAATAATAATAATATAAT

Gap gap included
Contig length 1179
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6143600
End point 6142439
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U12531
List of clone(s)

est1=VHM247F,1,619
est2=VHM247Z,620,1161
Translated Amino Acid sequence
EIVVKKIEDKKQETEPFNIDDLDLDDLDAQLDSVINDYETTEVINIKDDFIRIQNEISKQ
HFDRFGADESIVTTFNPNELLLKRREGEKMEEDENQIEEREEKEESEEEDDDESEEEESE
ESEEEEIADYEESNEIEQKLDTNQFNPQDRKVSFLIRPHGGKASRNLLIKTNANIDLRNL
ICKFKEHGEIKSVYQNITRSGTMHVVXX---

---XXXXYXNKNFGIPPLNVSQLYNNSKSSPTQSPRYSHDQQQQXQQQHSSQPTSPHVSK
SGSSGSFEGXDDSHIINLDDIXSGVNQKTTVMIXNIPYKFTHLNLDTMFKKHNLAYDYLY
MPTDPITKAHYGYTFVXFVNYQDIIQLCSLYNNKKLGNHPKFCEITYARLQGFPXTSAXX
ANNNNI


Translated Amino Acid sequence (All Frames)
Frame A:
kk*slkr*riknkkqnhsilmi*i*mi*mhnliv**mitkqqkl*ilkmillefkmksln
nisidlvqmnqllqplilmnff*rgerekkwkkmkik*knvkkkknqkkkmmmnqkkknq
knqkkkkllimknqmklnkn*iqinlihriekfhf*fvlmvekqveifl*rlmlili*ei
*fvnlknmvklnqfikilqdlvqcmlxxx---

---XXXXYXNKNFGIPPLNVSQLYNNSKSSPTQSPRYSHDQQQQXQQQHSSQPTSPHVSK
SGSSGSFEGXDDSHIINLDDIXSGVNQKTTVMIXNIPYKFTHLNLDTMFKKHNLAYDYLY
MPTDPITKAHYGYTFVXFVNYQDIIQLCSLYNNKKLGNHPKFCEITYARLQGFPXTSAXX
ANNNNI

Frame B:
rnsr*kdrg*ktrnrtiqy**frfr*frctt**cnk*lrnnrsyky*r*fy*nsk*nl*t
tfrsiwcr*incynl*s**tsskeergrkngrr*ksnrrt*rkrrirrrr***irrrrir
rirrrrnc*l*rik*n*tkiryksi*stg*ksfifnssswwksk*kssykd*c*y*fekf
nl*i*rtw*n*islskyykiwynaccxxx---

---xxxiixiktleyhh*mfxnftiiqnhhqlkvqdihmtnnnsxnnnihhnqhlhmfqn
lvvavvlkxqmivilsiwmixvve*ikklll*lxifhtnsli*i*iqclknii*lmiiyi
cqliqlqrhimdtlsxis*iiktsfnyvhftiiknwvtiqsfvk*lmqdskvflxlqplx
qiiii*

Frame C:
EIVVKKIEDKKQETEPFNIDDLDLDDLDAQLDSVINDYETTEVINIKDDFIRIQNEISKQ
HFDRFGADESIVTTFNPNELLLKRREGEKMEEDENQIEEREEKEESEEEDDDESEEEESE
ESEEEEIADYEESNEIEQKLDTNQFNPQDRKVSFLIRPHGGKASRNLLIKTNANIDLRNL
ICKFKEHGEIKSVYQNITRSGTMHVVXX---

---xxxl*x*klwnttikcfxtlq*fkiitnskskift*ptttaxtttfittnistcfki
w**r*f*rxr**syyqfg*yx*wsksknycyd*xysiqihsfkfrynv*kt*fsl*lfiy
an*snykgtlwihfrxfrklsrhhsimftlq**kig*pskvl*nnlcktprfssxfsxxs
k***yn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12531-1 (Contig-U12531-1Q)
/CSM_Contig/Contig-U12531-1Q.Seq.d
(1189 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Conti... 739 0.0
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U12495-1 (Contig-U12495-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U12487-1 (Contig-U12487-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U12553-1 (Contig-U12553-1Q) /CSM_Contig/Conti... 36 0.084
Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Conti... 36 0.084
Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Conti... 36 0.084
Contig-U11900-1 (Contig-U11900-1Q) /CSM_Contig/Conti... 36 0.084
Contig-U02210-1 (Contig-U02210-1Q) /CSM_Contig/Conti... 36 0.084

>Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Contig-U12531-1Q.Seq.d
Length = 1189

Score = 739 bits (373), Expect = 0.0
Identities = 397/397 (100%)
Strand = Plus / Plus


Query: 793 ctccacatgtttcaaaatctggtagtagcggtagttttgaaggancagatgatagtcata 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ctccacatgtttcaaaatctggtagtagcggtagttttgaaggancagatgatagtcata 852


Query: 853 ttatcaatttggatgatattngtagtggagtaaatcaaaaaactactgttatgattaana 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ttatcaatttggatgatattngtagtggagtaaatcaaaaaactactgttatgattaana 912


Query: 913 atattccatacaaattcactcatttaaatttagatacaatgtttaaaaaacataatttag 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 atattccatacaaattcactcatttaaatttagatacaatgtttaaaaaacataatttag 972


Query: 973 cttatgattatttatatatgccaactgatccaattacaaaggcacattatggatacactt 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 cttatgattatttatatatgccaactgatccaattacaaaggcacattatggatacactt 1032


Query: 1033 tcgttnatttcgtaaattatcaagacatcattcaattatgttcactttacaataataaaa 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 tcgttnatttcgtaaattatcaagacatcattcaattatgttcactttacaataataaaa 1092


Query: 1093 aattgggtaaccatccaaagttttgtgaaataacttatgcaagactccaaggttttcctc 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 aattgggtaaccatccaaagttttgtgaaataacttatgcaagactccaaggttttcctc 1152


Query: 1153 nnacttcagccnctgnagcaaataataataatataat 1189
|||||||||||||||||||||||||||||||||||||
Sbjct: 1153 nnacttcagccnctgnagcaaataataataatataat 1189


Score = 517 bits (261), Expect = e-147
Identities = 261/261 (100%)
Strand = Plus / Plus


Query: 1 aagaaatagtcgttaaaaagatagaggataaaaaacaagaaacagaaccattcaatattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaaatagtcgttaaaaagatagaggataaaaaacaagaaacagaaccattcaatattg 60


Query: 61 atgatttagatttagatgatttagatgcacaacttgatagtgtaataaatgattacgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgatttagatttagatgatttagatgcacaacttgatagtgtaataaatgattacgaaa 120


Query: 121 caacagaagttataaatattaaagatgattttattagaattcaaaatgaaatctctaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caacagaagttataaatattaaagatgattttattagaattcaaaatgaaatctctaaac 180


Query: 181 aacatttcgatcgatttggtgcagatgaatcaattgttacaacctttaatcctaatgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacatttcgatcgatttggtgcagatgaatcaattgttacaacctttaatcctaatgaac 240


Query: 241 ttcttctaaagaggagagagg 261
|||||||||||||||||||||
Sbjct: 241 ttcttctaaagaggagagagg 261


Score = 408 bits (206), Expect = e-114
Identities = 206/206 (100%)
Strand = Plus / Plus


Query: 414 caaaaattagatacaaatcaatttaatccacaggatagaaaagtttcatttttaattcgt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caaaaattagatacaaatcaatttaatccacaggatagaaaagtttcatttttaattcgt 473


Query: 474 cctcatggtggaaaagcaagtagaaatcttcttataaagactaatgctaatattgatttg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cctcatggtggaaaagcaagtagaaatcttcttataaagactaatgctaatattgatttg 533


Query: 534 agaaatttaatttgtaaatttaaagaacatggtgaaattaaatcagtttatcaaaatatt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agaaatttaatttgtaaatttaaagaacatggtgaaattaaatcagtttatcaaaatatt 593


Query: 594 acaagatctggtacaatgcatgttgt 619
||||||||||||||||||||||||||
Sbjct: 594 acaagatctggtacaatgcatgttgt 619


Score = 174 bits (88), Expect = 1e-43
Identities = 94/94 (100%)
Strand = Plus / Plus


Query: 649 attataanaataaaaactttggaataccaccattaaatgtttcncaactttacaataatt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 attataanaataaaaactttggaataccaccattaaatgtttcncaactttacaataatt 708


Query: 709 caaaatcatcaccaactcaaagtccaagatattc 742
||||||||||||||||||||||||||||||||||
Sbjct: 709 caaaatcatcaccaactcaaagtccaagatattc 742


>Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Contig-U13880-1Q.Seq.d
Length = 1592

Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 58 ttgatgatttagatttagat 77
||||||||||||||||||||
Sbjct: 237 ttgatgatttagatttagat 218


>Contig-U12495-1 (Contig-U12495-1Q) /CSM_Contig/Contig-U12495-1Q.Seq.d
Length = 922

Score = 38.2 bits (19), Expect = 0.021
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1171 caaataataataatataat 1189
|||||||||||||||||||
Sbjct: 207 caaataataataatataat 225


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,248
Number of Sequences: 6905
Number of extensions: 30248
Number of successful extensions: 10037
Number of sequences better than 10.0: 472
length of query: 1189
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1173
effective length of database: 5,564,391
effective search space: 6527030643
effective search space used: 6527030643
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 1
Homology vs DNA
Query= Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Contig-U12531-1Q.Seq.d
(1189 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ444154) Dictyostelium discoideum cDNA clone:ddv55m12, 3' ... 741 0.0 2
(BJ425345) Dictyostelium discoideum cDNA clone:ddv55m12, 5' ... 490 0.0 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 40 0.005 7
(DX984431) CHORI103-2E17.TV CHORI103 Schistosoma mansoni gen... 38 0.15 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 0.27 8
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 36 0.30 7
(BM275152) PfESToaa80f11.y1 Plasmodium falciparum 3D7 gameto... 38 0.54 3
(BM274775) PfESToaa74g10.y1 Plasmodium falciparum 3D7 gameto... 38 0.54 3
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.77 1
(AP003331) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.77 1
(EE263958) D07_D07gf4n14_pDNRf_505927 Myzus persicae, line G... 48 0.77 1
(DW014216) w7k20_M13F Myzus persicae, tobacco lineage, whole... 48 0.77 1
(DW014077) w7d4_M13F Myzus persicae, tobacco lineage, whole ... 48 0.77 1
(DT970061) CLJ126-C09.x1d-t SHGC-CLJ Gasterosteus aculeatus ... 48 0.77 1
(EY497720) CBBP3718.rev CBBP Hirudo medicinalis hermaphrodit... 48 0.77 1
(EY496316) CBBP2847.fwd CBBP Hirudo medicinalis hermaphrodit... 48 0.77 1
(EY496315) CBBP2847.rev CBBP Hirudo medicinalis hermaphrodit... 48 0.77 1
(EY484422) CBBP13571.fwd CBBP Hirudo medicinalis hermaphrodi... 48 0.77 1
(EY484421) CBBP13571.rev CBBP Hirudo medicinalis hermaphrodi... 48 0.77 1
(EY483641) CBBP13100.fwd CBBP Hirudo medicinalis hermaphrodi... 48 0.77 1
(EY483640) CBBP13100.rev CBBP Hirudo medicinalis hermaphrodi... 48 0.77 1
(AC168706) Strongylocentrotus purpuratus clone R3-3011L19, W... 44 0.82 6
(BX255881) Zebrafish DNA sequence from clone CH211-268E23 in... 34 1.00 7
(CR847565) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.8 9
(AC091589) Homo sapiens chromosome 18, clone RP11-635B11, co... 42 2.0 4
(DX097085) AU_BAC012B2A03_T7 CHORI212 Ictalurus punctatus ge... 32 2.1 2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 38 2.4 9
(BX511025) Zebrafish DNA sequence from clone DKEY-262L17 in ... 46 3.0 1
(BX321892) Zebrafish DNA sequence from clone DKEYP-21D12 in ... 46 3.0 1
(BV274199) S232P6357FD3.T0 Beagle Canis familiaris STS genom... 46 3.0 1
(U70856) Caenorhabditis elegans cosmid F57F4, complete seque... 46 3.0 1
(ER377490) 1093042166014 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.0 1
(EK400369) 1095469538497 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.0 1
(EJ281875) 1095366059234 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.0 1
(EL491878) CHUS7194.b1_C24.ab1 CHU(LMS) puzzle sunflower Hel... 46 3.0 1
(EC606867) Y21G05 YLX600 Hevea brasiliensis cDNA clone Y21G0... 46 3.0 1
(DN565597) 90853264 Sea Urchin primary mesenchyme cell cDNA ... 46 3.0 1
(CV887963) tak92g08.y1 Hydra EST UCI 6 Hydra magnipapillata ... 46 3.0 1
(AJ806022) Antirrhinum majus EST, clone 018_6_02_l22. 46 3.0 1
(AJ802122) Antirrhinum majus EST, clone 018_5_03_d07. 46 3.0 1
(EX605060) 255349930 Pea aphid whole body normalized full le... 46 3.0 1
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 46 3.0 1
(CU137654) Medicago truncatula chromosome 5 clone mth2-13f1,... 38 3.1 4
(EK280934) 1095462295089 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.2 2
(EJ424740) 1093012259095 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.7 2
(EK116209) 1092963247836 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.7 2
(AL953914) Zebrafish DNA sequence from clone CH211-235I18 in... 42 4.4 4
(AC115768) Mus musculus chromosome 19, clone RP23-107E10, co... 38 4.4 6
(ER519749) 1093015555886 Global-Ocean-Sampling_GS-35-01-01-1... 36 5.1 3
(AC186413) Zea mays chromosome 1 clone CH201-545N4; ZMMBBc05... 32 5.7 2
(AC179767) Strongylocentrotus purpuratus clone R3-1016H24, W... 36 5.7 5
(AC220977) Zea mays chromosome 1 clone CH201-548E22; ZMMBBc0... 32 5.7 2
(BX649314) Zebrafish DNA sequence from clone DKEYP-111A3 in ... 42 5.8 6
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 34 5.8 7
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 44 6.0 8
(AL929328) Mouse DNA sequence from clone RP23-332P16 on chro... 44 6.6 6
(DY683257) TTEA356T1V Tetrahymena thermophila EST library, c... 34 7.3 3
(DY680627) TTEA393T1V Tetrahymena thermophila EST library, c... 34 7.3 3
(AM876091) Venerupis (Ruditapes) philippinarum EST, 5' end s... 36 7.4 2
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 7.6 10
(CZ523374) GMW2-73N21a.b1 GMW2 Glycine max genomic, genomic ... 32 7.6 2
(FH591418) CHO_OF4660xe15r1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 7.6 2
(AC221913) Bos taurus clone CH240-378A13, WORKING DRAFT SEQU... 42 7.6 4
(CC900869) ZMMBBb0236N19.f ZMMBBb Zea mays subsp. mays genom... 32 7.7 2
(DY682871) TTEA293THD Tetrahymena thermophila EST library, c... 34 7.7 3
(DY682870) TTEA293THC Tetrahymena thermophila EST library, c... 34 7.7 3
(DY682602) TTEA256THD Tetrahymena thermophila EST library, c... 34 7.7 3
(DY682601) TTEA256THC Tetrahymena thermophila EST library, c... 34 7.7 3
(DY681523) TTEA136THD Tetrahymena thermophila EST library, c... 34 7.7 3
(DY681522) TTEA136THC Tetrahymena thermophila EST library, c... 34 7.7 3
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 38 7.7 7
(AC180764) Strongylocentrotus purpuratus clone R3-3080J22, W... 36 7.9 5
(CX578928) TTE00016014 Amplicon Express - Conjugative Form T... 34 8.0 3
(CX578533) TTE00016050 Amplicon Express - Conjugative Form T... 34 8.0 3
(CX577909) TTE00015910 Amplicon Express - Conjugative Form T... 34 8.0 3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 8.5 9
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 44 8.9 16
(AM876141) Venerupis (Ruditapes) philippinarum EST, 5' end s... 36 9.1 2
(AM877611) Venerupis (Ruditapes) philippinarum EST, 5' end s... 36 9.2 2
(DX514453) 702_3_14173361_5489_43656_081 Arachis hypogaea me... 42 9.4 2

>(BJ444154) Dictyostelium discoideum cDNA clone:ddv55m12, 3' end,
single read.
Length = 542

Score = 741 bits (374), Expect(2) = 0.0
Identities = 398/398 (100%)
Strand = Plus / Minus


Query: 792 tctccacatgtttcaaaatctggtagtagcggtagttttgaaggancagatgatagtcat 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tctccacatgtttcaaaatctggtagtagcggtagttttgaaggancagatgatagtcat 340


Query: 852 attatcaatttggatgatattngtagtggagtaaatcaaaaaactactgttatgattaan 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 attatcaatttggatgatattngtagtggagtaaatcaaaaaactactgttatgattaan 280


Query: 912 aatattccatacaaattcactcatttaaatttagatacaatgtttaaaaaacataattta 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aatattccatacaaattcactcatttaaatttagatacaatgtttaaaaaacataattta 220


Query: 972 gcttatgattatttatatatgccaactgatccaattacaaaggcacattatggatacact 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gcttatgattatttatatatgccaactgatccaattacaaaggcacattatggatacact 160


Query: 1032 ttcgttnatttcgtaaattatcaagacatcattcaattatgttcactttacaataataaa 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ttcgttnatttcgtaaattatcaagacatcattcaattatgttcactttacaataataaa 100


Query: 1092 aaattgggtaaccatccaaagttttgtgaaataacttatgcaagactccaaggttttcct 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 aaattgggtaaccatccaaagttttgtgaaataacttatgcaagactccaaggttttcct 40


Query: 1152 cnnacttcagccnctgnagcaaataataataatataat 1189
||||||||||||||||||||||||||||||||||||||
Sbjct: 39 cnnacttcagccnctgnagcaaataataataatataat 2

Score = 188 bits (95), Expect(2) = 0.0
Identities = 101/101 (100%)
Strand = Plus / Minus


Query: 649 attataanaataaaaactttggaataccaccattaaatgtttcncaactttacaataatt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 attataanaataaaaactttggaataccaccattaaatgtttcncaactttacaataatt 483


Query: 709 caaaatcatcaccaactcaaagtccaagatattcacatgac 749
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 caaaatcatcaccaactcaaagtccaagatattcacatgac 442

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,212,521,255
Number of extensions: 82793225
Number of successful extensions: 9445310
Number of sequences better than 10.0: 80
Length of query: 1189
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1165
Effective length of database: 97,308,875,965
Effective search space: 113364840499225
Effective search space used: 113364840499225
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Contig-U12531-1Q.Seq.d
(1189 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

EF676232_1(EF676232|pid:none) Picea sitchensis clone WS02723_C16... 69 3e-10
BT067187_1(BT067187|pid:none) Zea mays full-length cDNA clone ZM... 69 4e-10
AY579881_1(AY579881|pid:none) Medicago truncatula AML1 mRNA, com... 68 6e-10
AB244279_1(AB244279|pid:none) Oryza sativa Japonica Group OML4 m... 68 6e-10
AB022212_9(AB022212|pid:none) Arabidopsis thaliana genomic DNA, ... 67 1e-09
AK316683_1(AK316683|pid:none) Arabidopsis thaliana AT5G61960 mRN... 67 1e-09
AB244278_1(AB244278|pid:none) Oryza sativa Japonica Group OML3 m... 66 2e-09
AY579887_1(AY579887|pid:none) Citrus unshiu AML1 mRNA, complete ... 66 2e-09
AK319074_1(AK319074|pid:none) Arabidopsis thaliana AT4G18120 mRN... 66 3e-09
AL110123_9(AL110123|pid:none) Arabidopsis thaliana DNA chromosom... 66 3e-09
AC158464_2(AC158464|pid:none) Medicago truncatula chromosome 2 c... 65 4e-09
AK230306_1(AK230306|pid:none) Arabidopsis thaliana mRNA for puta... 65 4e-09
AY062613_1(AY062613|pid:none) Arabidopsis thaliana RNA-binding p... 65 4e-09
AY579889_1(AY579889|pid:none) Solanum tuberosum AML1 mRNA, compl... 64 8e-09
AY579886_1(AY579886|pid:none) Triticum aestivum AML15 mRNA, comp... 63 2e-08
AY579883_1(AY579883|pid:none) Aegilops speltoides AML1 mRNA, com... 63 2e-08
AF474982_5(AF474982|pid:none) Hordeum vulgare clone BAC 011009, ... 63 2e-08
AC146333_1(AC146333|pid:none) Medicago truncatula clone mth2-8d3... 63 2e-08
AB244277_1(AB244277|pid:none) Oryza sativa Japonica Group OML2 m... 62 3e-08
AL844505_229(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 61 9e-08
EF462991_1(EF462991|pid:none) Populus tremula x Populus alba ter... 60 2e-07
AY579884_1(AY579884|pid:none) Hordeum vulgare AML6 mRNA, complet... 60 2e-07
AC006931_11(AC006931|pid:none) Arabidopsis thaliana chromosome 2... 59 3e-07
AM910993_261(AM910993|pid:none) Plasmodium knowlesi strain H chr... 59 3e-07
AC006580_12(AC006580|pid:none) Arabidopsis thaliana chromosome 2... 59 3e-07
AM456567_1(AM456567|pid:none) Vitis vinifera contig VV78X277621.... 59 4e-07
(O65001) RecName: Full=Protein terminal ear1; &AF047852_1(AF047... 57 1e-06
CR954205_167(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 57 2e-06
(A2WY46) RecName: Full=Protein terminal ear1 homolog; AltName: F... 56 3e-06
(Q0JGS5) RecName: Full=Protein terminal ear1 homolog; AltName: F... 56 3e-06
AC008113_10(AC008113|pid:none) Genomic sequence for Arabidopsis ... 55 5e-06
AC150443_12(AC150443|pid:none) Medicago truncatula chromosome 7 ... 53 2e-05
DQ446931_1(DQ446931|pid:none) Arabidopsis thaliana clone pENTR22... 52 3e-05
DQ446326_1(DQ446326|pid:none) Arabidopsis thaliana clone pENTR22... 52 5e-05
DQ056481_1(DQ056481|pid:none) Arabidopsis thaliana putative RNA-... 52 5e-05
AP000601_2(AP000601|pid:none) Arabidopsis thaliana genomic DNA, ... 51 9e-05
AM920427_469(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 49 5e-04
AC174297_16(AC174297|pid:none) Medicago truncatula clone mth2-73... 48 8e-04
CU633900_280(CU633900|pid:none) Podospora anserina genomic DNA c... 46 0.003
AE017342_206(AE017342|pid:none) Cryptococcus neoformans var. neo... 45 0.004
AM465207_1(AM465207|pid:none) Vitis vinifera contig VV78X046685.... 43 0.019
S58472(S58472) lysine-rich surface antigen - Entamoeba histolyti... 39 0.28
EU970686_1(EU970686|pid:none) Zea mays clone 348882 RNA recognit... 38 0.62
CR382128_95(CR382128|pid:none) Yarrowia lipolytica strain CLIB12... 38 0.62
BC050079_1(BC050079|pid:none) Mus musculus synaptotagmin binding... 37 1.1
AL512486_5(AL512486|pid:none) S.pombe chromosome I BAC pB1A11. 37 1.4
AK078158_1(AK078158|pid:none) Mus musculus adult male medulla ob... 37 1.4
BC015575_1(BC015575|pid:none) Homo sapiens synaptotagmin binding... 37 1.4
(O60506) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 37 1.4
AK034845_1(AK034845|pid:none) Mus musculus 12 days embryo embryo... 37 1.4
AB035725_1(AB035725|pid:none) Mus musculus SYNCRIP mRNA, complet... 37 1.4
AL136082_3(AL136082|pid:none) Human DNA sequence from clone RP1-... 37 1.4
(Q7TP47) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 37 1.4
AK313572_1(AK313572|pid:none) Homo sapiens cDNA, FLJ94136, highl... 37 1.4
AK299796_1(AK299796|pid:none) Homo sapiens cDNA FLJ50849 complet... 37 1.4
(Q91ZR0) RecName: Full=Heterogeneous nuclear ribonucleoprotein Q... 37 1.4
CP001576_315(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 37 1.8
BT045983_1(BT045983|pid:none) Salmo salar clone ssal-rgf-538-170... 37 1.8
CP001326_401(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 36 2.3
AY648773_1(AY648773|pid:none) Danio rerio KIAA0682-like mRNA, co... 36 2.3
DQ648528_1(DQ648528|pid:none) Bombyx mori spliceosomal protein o... 36 3.1
CP000585_410(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 36 3.1
AY299514_1(AY299514|pid:none) Danio rerio nil per os (npo) mRNA,... 36 3.1
BC082875_1(BC082875|pid:none) Xenopus laevis hypothetical LOC494... 36 3.1
BC163877_1(BC163877|pid:none) Danio rerio RNA binding motif prot... 36 3.1
BC090711_1(BC090711|pid:none) Danio rerio RNA binding motif prot... 36 3.1
CU633900_930(CU633900|pid:none) Podospora anserina genomic DNA c... 36 3.1
CP000021_486(CP000021|pid:none) Vibrio fischeri ES114 chromosome... 35 4.0
AF031166_1(AF031166|pid:none) Homo sapiens SRp46 splicing factor... 35 4.0
AC144431_33(AC144431|pid:none) Medicago truncatula clone mth2-21... 35 5.2
BC040844_1(BC040844|pid:none) Homo sapiens synaptotagmin binding... 35 6.8
BC167335_1(BC167335|pid:none) Xenopus tropicalis cDNA clone MGC:... 35 6.8
AM471698_4(AM471698|pid:none) Vitis vinifera contig VV78X231541.... 34 8.9

>EF676232_1(EF676232|pid:none) Picea sitchensis clone WS02723_C16
unknown mRNA.
Length = 892

Score = 68.9 bits (167), Expect = 3e-10
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = +3

Query: 855 INLDDIXSGVNQKTTVMIXNIPYKFTH-LNLDTMFKKHNLAYDYLYMPTDPITKAHYGYT 1031
++LD I G + +TT+MI NIP K+T + L T+ + H YD+LY+P D K + GY
Sbjct: 696 LDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDEHHRGTYDFLYLPIDFKNKCNVGYA 755

Query: 1032 FVXFVNYQDIIQLCSLYNNKKLG--NHPKFCEITYARLQGFPXTSAXXANNN 1181
F+ + II +N KK N K + YAR+QG A N++
Sbjct: 756 FINMTSPSHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSS 807

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,330,964,796
Number of extensions: 24123676
Number of successful extensions: 37381
Number of sequences better than 10.0: 73
Number of HSP's gapped: 37327
Number of HSP's successfully gapped: 73
Length of query: 396
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 265
Effective length of database: 627,191,635
Effective search space: 166205783275
Effective search space used: 166205783275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.57 gvh: 0.24 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U12531-1 is nuc

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0