Contig-U12531-1 |
Contig ID |
Contig-U12531-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1179 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
6143600 |
End point |
6142439 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U12531 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 1 |
Homology vs DNA |
Query= Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Contig-U12531-1Q.Seq.d (1189 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ444154) Dictyostelium discoideum cDNA clone:ddv55m12, 3' ... 741 0.0 2 (BJ425345) Dictyostelium discoideum cDNA clone:ddv55m12, 5' ... 490 0.0 2 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 40 0.005 7 (DX984431) CHORI103-2E17.TV CHORI103 Schistosoma mansoni gen... 38 0.15 2 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 0.27 8 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 36 0.30 7 (BM275152) PfESToaa80f11.y1 Plasmodium falciparum 3D7 gameto... 38 0.54 3 (BM274775) PfESToaa74g10.y1 Plasmodium falciparum 3D7 gameto... 38 0.54 3 (AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.77 1 (AP003331) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.77 1 (EE263958) D07_D07gf4n14_pDNRf_505927 Myzus persicae, line G... 48 0.77 1 (DW014216) w7k20_M13F Myzus persicae, tobacco lineage, whole... 48 0.77 1 (DW014077) w7d4_M13F Myzus persicae, tobacco lineage, whole ... 48 0.77 1 (DT970061) CLJ126-C09.x1d-t SHGC-CLJ Gasterosteus aculeatus ... 48 0.77 1 (EY497720) CBBP3718.rev CBBP Hirudo medicinalis hermaphrodit... 48 0.77 1 (EY496316) CBBP2847.fwd CBBP Hirudo medicinalis hermaphrodit... 48 0.77 1 (EY496315) CBBP2847.rev CBBP Hirudo medicinalis hermaphrodit... 48 0.77 1 (EY484422) CBBP13571.fwd CBBP Hirudo medicinalis hermaphrodi... 48 0.77 1 (EY484421) CBBP13571.rev CBBP Hirudo medicinalis hermaphrodi... 48 0.77 1 (EY483641) CBBP13100.fwd CBBP Hirudo medicinalis hermaphrodi... 48 0.77 1 (EY483640) CBBP13100.rev CBBP Hirudo medicinalis hermaphrodi... 48 0.77 1 (AC168706) Strongylocentrotus purpuratus clone R3-3011L19, W... 44 0.82 6 (BX255881) Zebrafish DNA sequence from clone CH211-268E23 in... 34 1.00 7 (CR847565) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.8 9 (AC091589) Homo sapiens chromosome 18, clone RP11-635B11, co... 42 2.0 4 (DX097085) AU_BAC012B2A03_T7 CHORI212 Ictalurus punctatus ge... 32 2.1 2 (AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 38 2.4 9 (BX511025) Zebrafish DNA sequence from clone DKEY-262L17 in ... 46 3.0 1 (BX321892) Zebrafish DNA sequence from clone DKEYP-21D12 in ... 46 3.0 1 (BV274199) S232P6357FD3.T0 Beagle Canis familiaris STS genom... 46 3.0 1 (U70856) Caenorhabditis elegans cosmid F57F4, complete seque... 46 3.0 1 (ER377490) 1093042166014 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.0 1 (EK400369) 1095469538497 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.0 1 (EJ281875) 1095366059234 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.0 1 (EL491878) CHUS7194.b1_C24.ab1 CHU(LMS) puzzle sunflower Hel... 46 3.0 1 (EC606867) Y21G05 YLX600 Hevea brasiliensis cDNA clone Y21G0... 46 3.0 1 (DN565597) 90853264 Sea Urchin primary mesenchyme cell cDNA ... 46 3.0 1 (CV887963) tak92g08.y1 Hydra EST UCI 6 Hydra magnipapillata ... 46 3.0 1 (AJ806022) Antirrhinum majus EST, clone 018_6_02_l22. 46 3.0 1 (AJ802122) Antirrhinum majus EST, clone 018_5_03_d07. 46 3.0 1 (EX605060) 255349930 Pea aphid whole body normalized full le... 46 3.0 1 (CP000246) Clostridium perfringens ATCC 13124, complete genome. 46 3.0 1 (CU137654) Medicago truncatula chromosome 5 clone mth2-13f1,... 38 3.1 4 (EK280934) 1095462295089 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.2 2 (EJ424740) 1093012259095 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.7 2 (EK116209) 1092963247836 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.7 2 (AL953914) Zebrafish DNA sequence from clone CH211-235I18 in... 42 4.4 4 (AC115768) Mus musculus chromosome 19, clone RP23-107E10, co... 38 4.4 6 (ER519749) 1093015555886 Global-Ocean-Sampling_GS-35-01-01-1... 36 5.1 3 (AC186413) Zea mays chromosome 1 clone CH201-545N4; ZMMBBc05... 32 5.7 2 (AC179767) Strongylocentrotus purpuratus clone R3-1016H24, W... 36 5.7 5 (AC220977) Zea mays chromosome 1 clone CH201-548E22; ZMMBBc0... 32 5.7 2 (BX649314) Zebrafish DNA sequence from clone DKEYP-111A3 in ... 42 5.8 6 (AC115581) Dictyostelium discoideum chromosome 2 map complem... 34 5.8 7 (CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 44 6.0 8 (AL929328) Mouse DNA sequence from clone RP23-332P16 on chro... 44 6.6 6 (DY683257) TTEA356T1V Tetrahymena thermophila EST library, c... 34 7.3 3 (DY680627) TTEA393T1V Tetrahymena thermophila EST library, c... 34 7.3 3 (AM876091) Venerupis (Ruditapes) philippinarum EST, 5' end s... 36 7.4 2 (AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 7.6 10 (CZ523374) GMW2-73N21a.b1 GMW2 Glycine max genomic, genomic ... 32 7.6 2 (FH591418) CHO_OF4660xe15r1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 7.6 2 (AC221913) Bos taurus clone CH240-378A13, WORKING DRAFT SEQU... 42 7.6 4 (CC900869) ZMMBBb0236N19.f ZMMBBb Zea mays subsp. mays genom... 32 7.7 2 (DY682871) TTEA293THD Tetrahymena thermophila EST library, c... 34 7.7 3 (DY682870) TTEA293THC Tetrahymena thermophila EST library, c... 34 7.7 3 (DY682602) TTEA256THD Tetrahymena thermophila EST library, c... 34 7.7 3 (DY682601) TTEA256THC Tetrahymena thermophila EST library, c... 34 7.7 3 (DY681523) TTEA136THD Tetrahymena thermophila EST library, c... 34 7.7 3 (DY681522) TTEA136THC Tetrahymena thermophila EST library, c... 34 7.7 3 (AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 38 7.7 7 (AC180764) Strongylocentrotus purpuratus clone R3-3080J22, W... 36 7.9 5 (CX578928) TTE00016014 Amplicon Express - Conjugative Form T... 34 8.0 3 (CX578533) TTE00016050 Amplicon Express - Conjugative Form T... 34 8.0 3 (CX577909) TTE00015910 Amplicon Express - Conjugative Form T... 34 8.0 3 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 8.5 9 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 44 8.9 16 (AM876141) Venerupis (Ruditapes) philippinarum EST, 5' end s... 36 9.1 2 (AM877611) Venerupis (Ruditapes) philippinarum EST, 5' end s... 36 9.2 2 (DX514453) 702_3_14173361_5489_43656_081 Arachis hypogaea me... 42 9.4 2
>(BJ444154) Dictyostelium discoideum cDNA clone:ddv55m12, 3' end, single read. Length = 542
Score = 741 bits (374), Expect(2) = 0.0 Identities = 398/398 (100%) Strand = Plus / Minus
Query: 792 tctccacatgtttcaaaatctggtagtagcggtagttttgaaggancagatgatagtcat 851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 tctccacatgtttcaaaatctggtagtagcggtagttttgaaggancagatgatagtcat 340
Query: 852 attatcaatttggatgatattngtagtggagtaaatcaaaaaactactgttatgattaan 911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 339 attatcaatttggatgatattngtagtggagtaaatcaaaaaactactgttatgattaan 280
Query: 912 aatattccatacaaattcactcatttaaatttagatacaatgtttaaaaaacataattta 971 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 aatattccatacaaattcactcatttaaatttagatacaatgtttaaaaaacataattta 220
Query: 972 gcttatgattatttatatatgccaactgatccaattacaaaggcacattatggatacact 1031 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 219 gcttatgattatttatatatgccaactgatccaattacaaaggcacattatggatacact 160
Query: 1032 ttcgttnatttcgtaaattatcaagacatcattcaattatgttcactttacaataataaa 1091 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 159 ttcgttnatttcgtaaattatcaagacatcattcaattatgttcactttacaataataaa 100
Query: 1092 aaattgggtaaccatccaaagttttgtgaaataacttatgcaagactccaaggttttcct 1151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99 aaattgggtaaccatccaaagttttgtgaaataacttatgcaagactccaaggttttcct 40
Query: 1152 cnnacttcagccnctgnagcaaataataataatataat 1189 |||||||||||||||||||||||||||||||||||||| Sbjct: 39 cnnacttcagccnctgnagcaaataataataatataat 2
Score = 188 bits (95), Expect(2) = 0.0 Identities = 101/101 (100%) Strand = Plus / Minus
Query: 649 attataanaataaaaactttggaataccaccattaaatgtttcncaactttacaataatt 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 542 attataanaataaaaactttggaataccaccattaaatgtttcncaactttacaataatt 483
Query: 709 caaaatcatcaccaactcaaagtccaagatattcacatgac 749 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 caaaatcatcaccaactcaaagtccaagatattcacatgac 442
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,212,521,255 Number of extensions: 82793225 Number of successful extensions: 9445310 Number of sequences better than 10.0: 80 Length of query: 1189 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1165 Effective length of database: 97,308,875,965 Effective search space: 113364840499225 Effective search space used: 113364840499225 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 3 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |