Contig-U12522-1
Contig ID Contig-U12522-1
Contig update 2002.12.18
Contig sequence
>Contig-U12522-1 (Contig-U12522-1Q) /CSM_Contig/Contig-U12522-1Q.Seq.d
CACTGTTGGCCTACTGGTAATATCAATTGATTGGAAAAAAGAAGAAGAAA
AAAAAATGTTAGTTTTAATTAAAACACCAACTATAACATTTTCATTGGAT
ATTGAAATTTCAGATACCTTGTCAGTATTATATAACAAGGTTGCAGAGAG
AACAAAAAATAAAAGCTATCAATTTCAATTACACTTTGCTGGTGATGTTT
TATCAAATATCTTATCAAAAGCAATTGGAGCATGTGGTATTAAAAAAGAG
TCAACAATCCATATGATCTTAATTAAAGAGATTAAATTAACTATTAAATA
TTTAGATAAAGATTATCCAGTTGAAATTCCAAATAATGCAGGTTTAAAAG
TTTCACATTTAGTATCTCATATTAGAACATCATTACAAACTCAAATACCA
TTATTACGTTCATATTTAAACTCTGTTAGTTTATATAAAACTGGTACAGA
TACTAAATATACAGAGAGTATGAGTTTACAAGGAGAATATTAATTGTTAT
GATACTATTGATATGAAAATTGGAACACCACTACCTACAACAACGACAAC
AACAACAACAACAGGATCAACATTAAATAAAAAAGAACCACTATCAAAAT
ATAAATATAATAATAAAAATAATAATAATAATTATAGTAAAACTAAAGGT
TATGAAAGTGATACATCAAGTGATAGTGATAGTGATAGTGAATCATATAG
AAATAGATATAATGGTAAATCATCAGGATCAGGAACAGGATCAGGATCAT
CAAAACCATCACAATATGAAATTGAAAAAGAAATTGAA----------NN
NNNNNNNNAAAGAAGAGCAGAAATTGTAGAATCAAATATAACTGATGGTA
AATCAACATCATCATCATCACCATCATCATCATCATCATCATTAACAATA
ACTTCATCAATGAATTCAATGAAATTATTTGATTTTGAAAGTAGAATCAT
TAATGAAACAAATTTAGAAACAATAAAAAAGAATAAAGTGACAAATAAAG
AGAAAATAATTTATATAATTGGTGATTCAGGAATTGGTAAAACTACATTT
GTAAATAATTTAAACTATGTAGGTAAATCATATAATAGTAAACTTAGATT
TAAAGAGAAATCAACATCATTATCACAATCGGATTTTGATACTACAGATT
TGTTTATTGTGTGTTTCACTCTACAAGGTTCAAGTAATTCATATAATAAC
TTTACAAATTATTTCACAGAGATTCGTAAACGTGATCCAATGAAACCAAT
TGCAATAGCACTACTTCAAAATGATTTAATACCCGATTTAAATAATAAAG
CAACTTATCAGCCCTCTGCACTTCAACAATTATATTCATTGGCTGGAACA
TTAGAATTCTCTTCAAAAATGCCACAAAATCAAATTAAATTAATTGAAAA
ATCAATAAATTCGAAATTATCATCAACTTCATCATCATCATCATCATCTT
GTATTTAATGTAAAGTTATAAAACTAAAAAATAAACTAAAANAAAAAA

Gap gap included
Contig length 1488
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7708130
End point 7706665
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U12522
List of clone(s)

est1=VHL171F,1,578
est2=VSA771Z,319,789
est3=VHL171Z,790,1480
Translated Amino Acid sequence
llayw*yqligkkkkkkkc*f*lkhql*hfhwilkfqipcqyyitrlqreqkikainfny
tllvmfyqisyqkqlehvvlkksqqsi*s*lkrln*llni*ikiiqlkfqimqv*kfhi*
ylilehhyklkyhyyvhi*tllvyiklvqilniqrv*VYKENINCYDTIDMKIGTPLPTT
TTTTTTTGSTLNKKEPLSKYKYNNKNNNNNYSKTKGYESDTSSDSDSDSESYRNRYNGKS
SGSGTGSGSSKPSQYEIEKEIE---

---XXXXRRAEIVESNITDGKSTSSSSPSSSSSSLTITSSMNSMKLFDFESRIINETNLE
TIKKNKVTNKEKIIYIIGDSGIGKTTFVNNLNYVGKSYNSKLRFKEKSTSLSQSDFDTTD
LFIVCFTLQGSSNSYNNFTNYFTEIRKRDPMKPIAIALLQNDLIPDLNNKATYQPSALQQ
LYSLAGTLEFSSKMPQNQIKLIEKSINSKLSSTSSSSSSSCI*ckviklknklkxk


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgnin*lekrrrkknvsfn*ntnynifigy*nfrylvsii*qgcrenkk*klsisi
tlcw*cfikyliksnwsmwy*krvnnpydln*rd*iny*ifr*rlss*nsk*crfksftf
sisy*niitnsntiitfifklc*fi*nwyry*iyreyeftrrilivmilli*klehhylq
qrqqqqqqdqh*ikknhyqniniiikiiiiiivklkvmkvihqvivivivnhieidimvn
hqdqeqdqdhqnhhnmklkkkl---

---XXXXRRAEIVESNITDGKSTSSSSPSSSSSSLTITSSMNSMKLFDFESRIINETNLE
TIKKNKVTNKEKIIYIIGDSGIGKTTFVNNLNYVGKSYNSKLRFKEKSTSLSQSDFDTTD
LFIVCFTLQGSSNSYNNFTNYFTEIRKRDPMKPIAIALLQNDLIPDLNNKATYQPSALQQ
LYSLAGTLEFSSKMPQNQIKLIEKSINSKLSSTSSSSSSSCI*ckviklknklkxk

Frame B:
tvgllvisidwkkeeekkmlvliktptitfsldieisdtlsvlynkvaertknksyqfql
hfagdvlsnilskaigacgikkestihmilikeikltikyldkdypveipnnaglkvshl
vshirtslqtqipllrsylnsvslyktgtdtkytesmslqgey*ll*yy*yenwntttyn
ndnnnnnrinik*krttiki*i***k****l**n*rl*k*yik*******ii*k*i*w*i
irirnririiktiti*n*krn*---

---xxxkeeqkl*nqi*lmvnqhhhhhhhhhhhh*q*lhq*iq*nylilkveslmkqi*k
q*krik*qikrk*fi*lviqelvklhl*ii*tm*vnhiivnldlkrnqhhyhnrililqi
cllcvslykvqvihiitlqiisqrfvnviq*nqlq*hyfkmi*ypi*iikqlisplhfnn
yihwleh*nslqkchkikln*lknq*irnyhqlhhhhhhlvfnvkl*n*kin*xkk

Frame C:
llayw*yqligkkkkkkkc*f*lkhql*hfhwilkfqipcqyyitrlqreqkikainfny
tllvmfyqisyqkqlehvvlkksqqsi*s*lkrln*llni*ikiiqlkfqimqv*kfhi*
ylilehhyklkyhyyvhi*tllvyiklvqilniqrv*VYKENINCYDTIDMKIGTPLPTT
TTTTTTTGSTLNKKEPLSKYKYNNKNNNNNYSKTKGYESDTSSDSDSDSESYRNRYNGKS
SGSGTGSGSSKPSQYEIEKEIE---

---xxxkksrncrikyn*w*iniiiitiiiiiiinnnfinefneii*f*k*nh**nkfrn
nkke*sdk*rennlynw*frnw*nyick*fklcr*ii***t*i*reiniiitigf*yyrf
vycvfhstrfk*fi**lyklfhrds*t*snetncnsttsk*fntrfk**snlsalctsti
ifigwnirilfknatksn*in*kinkfeiiinfiiiiiilylm*syktkk*tkxk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12522-1 (Contig-U12522-1Q)
/CSM_Contig/Contig-U12522-1Q.Seq.d
(1498 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12522-1 (Contig-U12522-1Q) /CSM_Contig/Conti... 1009 0.0
Contig-U12746-1 (Contig-U12746-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U13856-1 (Contig-U13856-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11089-1 (Contig-U11089-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U04462-1 (Contig-U04462-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U13959-1 (Contig-U13959-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13918-1 (Contig-U13918-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13593-1 (Contig-U13593-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12352-1 (Contig-U12352-1Q) /CSM_Contig/Conti... 38 0.027

>Contig-U12522-1 (Contig-U12522-1Q) /CSM_Contig/Contig-U12522-1Q.Seq.d
Length = 1498

Score = 1009 bits (509), Expect = 0.0
Identities = 527/536 (98%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggtaatatcaattgattggaaaaaagaagaagnnnnnnnnntgtt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 cactgttggcctactggtaatatcaattgattggaaaaaagaagaagaaaaaaaaatgtt 60


Query: 61 agttttaattaaaacaccaactataacattttcattggatattgaaatttcagatacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agttttaattaaaacaccaactataacattttcattggatattgaaatttcagatacctt 120


Query: 121 gtcagtattatataacaaggttgcagagagaacaaaaaataaaagctatcaatttcaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcagtattatataacaaggttgcagagagaacaaaaaataaaagctatcaatttcaatt 180


Query: 181 acactttgctggtgatgttttatcaaatatcttatcaaaagcaattggagcatgtggtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acactttgctggtgatgttttatcaaatatcttatcaaaagcaattggagcatgtggtat 240


Query: 241 taaaaaagagtcaacaatccatatgatcttaattaaagagattaaattaactattaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaaaaagagtcaacaatccatatgatcttaattaaagagattaaattaactattaaata 300


Query: 301 tttagataaagattatccagttgaaattccaaataatgcaggtttaaaagtttcacattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttagataaagattatccagttgaaattccaaataatgcaggtttaaaagtttcacattt 360


Query: 361 agtatctcatattagaacatcattacaaactcaaataccattattacgttcatatttaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtatctcatattagaacatcattacaaactcaaataccattattacgttcatatttaaa 420


Query: 421 ctctgttagtttatataaaactggtacagatactaaatatacagagagtatgagtttaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctctgttagtttatataaaactggtacagatactaaatatacagagagtatgagtttaca 480


Query: 481 aggagaatattaattgttatgatactattgatatgaaaattggaacaccactacct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aggagaatattaattgttatgatactattgatatgaaaattggaacaccactacct 536


Score = 700 bits (353), Expect = 0.0
Identities = 353/353 (100%)
Strand = Plus / Plus


Query: 1011 ttatataattggtgattcaggaattggtaaaactacatttgtaaataatttaaactatgt 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 ttatataattggtgattcaggaattggtaaaactacatttgtaaataatttaaactatgt 1070


Query: 1071 aggtaaatcatataatagtaaacttagatttaaagagaaatcaacatcattatcacaatc 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 aggtaaatcatataatagtaaacttagatttaaagagaaatcaacatcattatcacaatc 1130


Query: 1131 ggattttgatactacagatttgtttattgtgtgtttcactctacaaggttcaagtaattc 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 ggattttgatactacagatttgtttattgtgtgtttcactctacaaggttcaagtaattc 1190


Query: 1191 atataataactttacaaattatttcacagagattcgtaaacgtgatccaatgaaaccaat 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 atataataactttacaaattatttcacagagattcgtaaacgtgatccaatgaaaccaat 1250


Query: 1251 tgcaatagcactacttcaaaatgatttaatacccgatttaaataataaagcaacttatca 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 tgcaatagcactacttcaaaatgatttaatacccgatttaaataataaagcaacttatca 1310


Query: 1311 gccctctgcacttcaacaattatattcattggctggaacattagaattctctt 1363
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 gccctctgcacttcaacaattatattcattggctggaacattagaattctctt 1363


Score = 309 bits (156), Expect = 5e-84
Identities = 156/156 (100%)
Strand = Plus / Plus


Query: 633 tatagtaaaactaaaggttatgaaagtgatacatcaagtgatagtgatagtgatagtgaa 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tatagtaaaactaaaggttatgaaagtgatacatcaagtgatagtgatagtgatagtgaa 692


Query: 693 tcatatagaaatagatataatggtaaatcatcaggatcaggaacaggatcaggatcatca 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcatatagaaatagatataatggtaaatcatcaggatcaggaacaggatcaggatcatca 752


Query: 753 aaaccatcacaatatgaaattgaaaaagaaattgaa 788
||||||||||||||||||||||||||||||||||||
Sbjct: 753 aaaccatcacaatatgaaattgaaaaagaaattgaa 788


Score = 115 bits (58), Expect = 1e-25
Identities = 58/58 (100%)
Strand = Plus / Plus


Query: 893 taacaataacttcatcaatgaattcaatgaaattatttgattttgaaagtagaatcat 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 taacaataacttcatcaatgaattcaatgaaattatttgattttgaaagtagaatcat 950


Score = 85.7 bits (43), Expect = 1e-16
Identities = 43/43 (100%)
Strand = Plus / Plus


Query: 809 aaagaagagcagaaattgtagaatcaaatataactgatggtaa 851
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aaagaagagcagaaattgtagaatcaaatataactgatggtaa 851


Score = 40.1 bits (20), Expect = 0.007
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1449 ttgtatttaatgtaaagtta 1468
||||||||||||||||||||
Sbjct: 1449 ttgtatttaatgtaaagtta 1468


>Contig-U12746-1 (Contig-U12746-1Q) /CSM_Contig/Contig-U12746-1Q.Seq.d
Length = 642

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus


Query: 894 aacaataacttcatcaatgaatt 916
|||||||||||||||||||||||
Sbjct: 161 aacaataacttcatcaatgaatt 139


>Contig-U13856-1 (Contig-U13856-1Q) /CSM_Contig/Contig-U13856-1Q.Seq.d
Length = 1445

Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggtaata 22
||||||||||||||||||||||
Sbjct: 2 cactgttggcctactggtaata 23


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,998
Number of Sequences: 6905
Number of extensions: 24998
Number of successful extensions: 3004
Number of sequences better than 10.0: 656
length of query: 1498
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1482
effective length of database: 5,564,391
effective search space: 8246427462
effective search space used: 8246427462
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 1
Homology vs DNA
Query= Contig-U12522-1 (Contig-U12522-1Q) /CSM_Contig/Contig-U12522-1Q.Seq.d
(1498 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 682 0.0 9
(BJ424814) Dictyostelium discoideum cDNA clone:ddv53m17, 5' ... 952 0.0 2
(BJ443659) Dictyostelium discoideum cDNA clone:ddv53m17, 3' ... 682 0.0 4
(AU261726) Dictyostelium discoideum vegetative cDNA clone:VS... 309 e-165 3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 0.007 21
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 42 0.008 11
(CP000283) Rhodopseudomonas palustris BisB5, complete genome. 54 0.016 1
(ES909238) BNARO6GH_T3_010_D01_6DEC2006_009 Brassica napus B... 52 0.062 1
(ES902739) BNARO4GH_T3_004_H10_24NOV2006_066 Brassica napus ... 52 0.062 1
(FG611247) stem_S070_D07.SEQ Opium poppy stem cDNA library P... 52 0.062 1
(U66911) Dictyostelium discoideum ORF DG1007 gene, partial cds. 36 0.22 3
(CI031426) Oryza sativa Japonica Group cDNA, clone: 009-M087... 46 0.24 2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 50 0.25 1
(AC224080) Bos taurus clone CH240-450F6, WORKING DRAFT SEQUE... 50 0.25 1
(FH373229) CHO_OF4530xd05r1.ab1 CHO_OF4 Nicotiana tabacum ge... 50 0.25 1
(FH322268) CHO_OF4542xp09r1.ab1 CHO_OF4 Nicotiana tabacum ge... 50 0.25 1
(EJ602725) 1092961207907 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.25 1
(EJ582626) 1092960185710 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.25 1
(AL422861) T7 end of clone AZ0AA004G04 of library AZ0AA from... 50 0.25 1
(BJ418120) Dictyostelium discoideum cDNA clone:ddv31p13, 5' ... 46 0.26 2
(CP000361) Arcobacter butzleri RM4018, complete genome. 36 0.26 23
(ER295050) 1092343641577 Global-Ocean-Sampling_GS-34-01-01-1... 44 0.27 2
(AF083031) Guillardia theta nucleomorph chromosome 3, comple... 32 0.35 8
(CU024869) M.truncatula DNA sequence from clone MTH2-94B15 o... 46 0.56 6
(CX831115) ACAC-aaa25a05.g1 Hydra EST UCI 7 Hydra magnipapil... 36 0.70 2
(DR437010) ACAB-aaa56h12.g1 Hydra UCI6- barcoded EST's Hydra... 36 0.70 2
(CX633795) taj43g04.y3 Hydra EST UCI 5 Hydra magnipapillata ... 36 0.70 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 46 0.75 18
(AX488836) Sequence 6136 from Patent WO02053728. 46 0.79 2
(CR848712) Zebrafish DNA sequence from clone CH211-264N5 in ... 48 0.97 1
(BX936445) Zebrafish DNA sequence from clone DKEY-50O12 in l... 48 0.97 1
(BX890575) Zebrafish DNA sequence from clone CH211-235C4 in ... 48 0.97 1
(BX005335) Zebrafish DNA sequence from clone DKEY-240N8. 48 0.97 1
(AB277758) Paralichthys olivaceus TBT-bp 2 gene for tributyl... 48 0.97 1
(AC165235) Mus musculus chromosome 8, clone RP23-332G19, com... 48 0.97 1
(AC163399) Mus musculus chromosome 18, clone RP24-66G13, com... 48 0.97 1
(AC154226) Mus musculus BAC clone RP24-353J14 from chromosom... 48 0.97 1
(AC102496) Mus musculus chromosome 18, clone RP24-567O18, co... 48 0.97 1
(AJ704496) Nephradenia acerosa chloroplast partial rps16 int... 48 0.97 1
(AJ704495) Metastelma myrtifolium chloroplast partial rps16 ... 48 0.97 1
(CS670987) Sequence 3 from Patent WO2007061762. 48 0.97 1
(CQ591335) Sequence 19093 from Patent WO0171042. 48 0.97 1
(CQ590319) Sequence 18077 from Patent WO0171042. 48 0.97 1
(CQ590318) Sequence 18076 from Patent WO0171042. 48 0.97 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 48 0.97 1
(AC092401) Drosophila melanogaster, chromosome X, region 13E... 48 0.97 1
(AC013431) Drosophila melanogaster, chromosome X, region 13E... 48 0.97 1
(AC158160) Mus musculus chromosome 18 clone RP23-42H11 map 1... 48 0.97 1
(AC146062) Pan troglodytes chromosome UNK clone RP43-44O24, ... 48 0.97 1
(AC141516) Rattus norvegicus clone CH230-164F9, WORKING DRAF... 48 0.97 1
(AC132729) Rattus norvegicus clone CH230-21H23, WORKING DRAF... 48 0.97 1
(AC222395) Bos taurus clone CH240-417E11, WORKING DRAFT SEQU... 48 0.97 1
(AC203427) Zea mays chromosome 8 clone CH201-146M19; ZMMBBc0... 48 0.97 1
(AC176848) Strongylocentrotus purpuratus clone R3-1110H21, W... 48 0.97 1
(AC167216) Bos taurus clone CH240-139A20, *** SEQUENCING IN ... 48 0.97 1
(AC019940) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.97 1
(AZ044567) Gm_UMb001_106_L08.F UMN Soybean BAC Library (pECS... 48 0.97 1
(FH701337) CHO_OF5159xk22f1.ab1 CHO_OF5 Nicotiana tabacum ge... 48 0.97 1
(ER148799) 1095522130721 Global-Ocean-Sampling_GS-33-01-01-1... 48 0.97 1
(EK965246) 1095516189088 Global-Ocean-Sampling_GS-33-01-01-1... 48 0.97 1
(EK733989) 1093016356168 Global-Ocean-Sampling_GS-33-01-01-1... 48 0.97 1
(EK653507) 1092351306250 Global-Ocean-Sampling_GS-33-01-01-1... 48 0.97 1
(EK448511) 1095467061390 Global-Ocean-Sampling_GS-32-01-01-1... 48 0.97 1
(EK214242) 1095460110993 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.97 1
(EJ981995) 1093022161728 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.97 1
(EJ954813) 1093018967314 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.97 1
(EJ513860) 1092343577690 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.97 1
(DU363857) 1098313052395 CHORI-243 Ovis aries genomic clone ... 48 0.97 1
(AL423536) T3 end of clone AZ0AA009A09 of library AZ0AA from... 48 0.97 1
(AL289543) Tetraodon nigroviridis genome survey sequence PUC... 48 0.97 1
(AL226711) Tetraodon nigroviridis genome survey sequence PUC... 48 0.97 1
(AL188284) Tetraodon nigroviridis genome survey sequence T7 ... 48 0.97 1
(DH408304) Oryzias latipes Fosmid clone:GOLWFno812_p24, forw... 48 0.97 1
(EV039121) BNSCS2CT_UP_322_C02_28MAY2007_012 Brassica napus ... 48 0.97 1
(EL587715) 65JKBNM0_T3_012_E12_17MAR2005_088 65JKBNM0 Brassi... 48 0.97 1
(EE518568) 36RDBRG_UP_030_A10_23JUN2004_080 Brassica rapa 36... 48 0.97 1
(CU555382) Spc_28YA05 cDNA clone of Developmental Stages Lib... 48 0.97 1
(CT612145) Danio rerio EST, clone ZF_mu_3h13 5'. 48 0.97 1
(AI944845) bs06b04.y1 Drosophila melanogaster adult testis l... 48 0.97 1
(CA091032) SCUTAM2007A10.g AM2 Saccharum officinarum cDNA cl... 48 0.97 1
(BQ791978) E3764 Chinese cabbage etiolated seedling library ... 48 0.97 1
(BJ337278) Dictyostelium discoideum cDNA clone:dda56j22, 5' ... 48 0.97 1
(BE803328) sr54h02.y1 Gm-c1051 Glycine max cDNA clone GENOME... 48 0.97 1
(FD966326) RR1HB89TF RR1(CS) Raphanus raphanistrum subsp. ma... 48 0.97 1
(FD670948) CBHT628.fwd CBHT Mycosphaerella fijiensis MfEST3 ... 48 0.97 1
(FD556489) RR4EL83TF RR4(PB) Raphanus raphanistrum subsp. la... 48 0.97 1
(EX769010) RR3CO35JQ RR3(NY) Raphanus raphanistrum subsp. ra... 48 0.97 1
(EX765217) RR3CO35TF RR3(NY) Raphanus raphanistrum subsp. ra... 48 0.97 1
(EV524663) RR1A349TF RR1(CS) Raphanus raphanistrum subsp. ma... 48 0.97 1
(AE006712) Sulfolobus solfataricus P2 section 71 of 272 of t... 48 0.97 1
(AC168732) Strongylocentrotus purpuratus clone R3-3010J17, W... 46 1.2 4
(CW361113) fsbb001f029i04k0 Sorghum methylation filtered lib... 46 1.3 2
(DT320768) SusFleck_BF_0017_0020_5_pCNS_K09 SusFleck Backfat... 38 1.3 2
(ER656545) SB_BBc132-F07.F SB_BBc Sorghum bicolor genomic 5'... 46 1.3 2
(EK113675) 1092963150082 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.6 2
(AE017263) Mesoplasma florum L1 complete genome. 38 1.9 21
(CN587219) USDA-FP_130291 Acyrthosiphon pisum, Pea Aphid Acy... 34 2.5 4
(BU095238) rf63g09.y2 Meloidogyne hapla J2 pAMP1 v1 Meloidog... 34 2.6 2
(AF547983) Schizosaccharomyces japonicus mitochondrial DNA, ... 36 3.0 6
(CZ527616) SRAA-aac50a06.b1 Strongyloides ratti whole genome... 32 3.4 3

>(AC116977) Dictyostelium discoideum chromosome 2 map 5515173-5817331
strain AX4, complete sequence.
Length = 302156

Score = 682 bits (344), Expect(9) = 0.0
Identities = 344/344 (100%)
Strand = Plus / Minus


Query: 1020 tggtgattcaggaattggtaaaactacatttgtaaataatttaaactatgtaggtaaatc 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114076 tggtgattcaggaattggtaaaactacatttgtaaataatttaaactatgtaggtaaatc 114017


Query: 1080 atataatagtaaacttagatttaaagagaaatcaacatcattatcacaatcggattttga 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114016 atataatagtaaacttagatttaaagagaaatcaacatcattatcacaatcggattttga 113957


Query: 1140 tactacagatttgtttattgtgtgtttcactctacaaggttcaagtaattcatataataa 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113956 tactacagatttgtttattgtgtgtttcactctacaaggttcaagtaattcatataataa 113897


Query: 1200 ctttacaaattatttcacagagattcgtaaacgtgatccaatgaaaccaattgcaatagc 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113896 ctttacaaattatttcacagagattcgtaaacgtgatccaatgaaaccaattgcaatagc 113837


Query: 1260 actacttcaaaatgatttaatacccgatttaaataataaagcaacttatcagccctctgc 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113836 actacttcaaaatgatttaatacccgatttaaataataaagcaacttatcagccctctgc 113777


Query: 1320 acttcaacaattatattcattggctggaacattagaattctctt 1363
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113776 acttcaacaattatattcattggctggaacattagaattctctt 113733

Score = 607 bits (306), Expect(9) = 0.0
Identities = 309/310 (99%)
Strand = Plus / Minus


Query: 57 tgttagttttaattaaaacaccaactataacattttcattggatattgaaatttcagata 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116154 tgttagttttaattaaaacaccaactataacattttcattggatattgaaatttcagata 116095


Query: 117 ccttgtcagtattatataacaaggttgcagagagaacaaaaaataaaagctatcaatttc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116094 ccttgtcagtattatataacaaggttgcagagagaacaaaaaataaaagctatcaatttc 116035


Query: 177 aattacactttgctggtgatgttttatcaaatatcttatcaaaagcaattggagcatgtg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116034 aattacactttgctggtgatgttttatcaaatatcttatcaaaagcaattggagcatgtg 115975


Query: 237 gtattaaaaaagagtcaacaatccatatgatcttaattaaagagattaaattaactatta 296
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 115974 gtattaaaaaagagtcaacaattcatatgatcttaattaaagagattaaattaactatta 115915


Query: 297 aatatttagataaagattatccagttgaaattccaaataatgcaggtttaaaagtttcac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115914 aatatttagataaagattatccagttgaaattccaaataatgcaggtttaaaagtttcac 115855


Query: 357 atttagtatc 366
||||||||||
Sbjct: 115854 atttagtatc 115845

Score = 309 bits (156), Expect(9) = 0.0
Identities = 156/156 (100%)
Strand = Plus / Minus


Query: 633 tatagtaaaactaaaggttatgaaagtgatacatcaagtgatagtgatagtgatagtgaa 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115452 tatagtaaaactaaaggttatgaaagtgatacatcaagtgatagtgatagtgatagtgaa 115393


Query: 693 tcatatagaaatagatataatggtaaatcatcaggatcaggaacaggatcaggatcatca 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115392 tcatatagaaatagatataatggtaaatcatcaggatcaggaacaggatcaggatcatca 115333


Query: 753 aaaccatcacaatatgaaattgaaaaagaaattgaa 788
||||||||||||||||||||||||||||||||||||
Sbjct: 115332 aaaccatcacaatatgaaattgaaaaagaaattgaa 115297

Score = 230 bits (116), Expect(9) = 0.0
Identities = 116/116 (100%)
Strand = Plus / Minus


Query: 367 tcatattagaacatcattacaaactcaaataccattattacgttcatatttaaactctgt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115717 tcatattagaacatcattacaaactcaaataccattattacgttcatatttaaactctgt 115658


Query: 427 tagtttatataaaactggtacagatactaaatatacagagagtatgagtttacaag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115657 tagtttatataaaactggtacagatactaaatatacagagagtatgagtttacaag 115602

Score = 115 bits (58), Expect(9) = 0.0
Identities = 58/58 (100%)
Strand = Plus / Minus


Query: 893 taacaataacttcatcaatgaattcaatgaaattatttgattttgaaagtagaatcat 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114203 taacaataacttcatcaatgaattcaatgaaattatttgattttgaaagtagaatcat 114146

Score = 107 bits (54), Expect(9) = 0.0
Identities = 54/54 (100%)
Strand = Plus / Minus


Query: 483 gagaatattaattgttatgatactattgatatgaaaattggaacaccactacct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115602 gagaatattaattgttatgatactattgatatgaaaattggaacaccactacct 115549

Score = 95.6 bits (48), Expect(9) = 0.0
Identities = 48/48 (100%)
Strand = Plus / Minus


Query: 809 aaagaagagcagaaattgtagaatcaaatataactgatggtaaatcaa 856
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114287 aaagaagagcagaaattgtagaatcaaatataactgatggtaaatcaa 114240

Score = 60.0 bits (30), Expect(9) = 0.0
Identities = 30/30 (100%)
Strand = Plus / Minus


Query: 18 taatatcaattgattggaaaaaagaagaag 47
||||||||||||||||||||||||||||||
Sbjct: 116193 taatatcaattgattggaaaaaagaagaag 116164

Score = 32.2 bits (16), Expect(9) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 1453 atttaatgtaaagtta 1468
||||||||||||||||
Sbjct: 113642 atttaatgtaaagtta 113627

Score = 36.2 bits (18), Expect(12) = 0.25
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 1106 agaaatcaacatcattat 1123
||||||||||||||||||
Sbjct: 46789 agaaatcaacatcattat 46772

Score = 34.2 bits (17), Expect(12) = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 753 aaaccatcacaatatga 769
|||||||||||||||||
Sbjct: 67330 aaaccatcacaatatga 67314

Score = 34.2 bits (17), Expect(12) = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 675 agtgatagtgatagtga 691
|||||||||||||||||
Sbjct: 115416 agtgatagtgatagtga 115400

Score = 30.2 bits (15), Expect(12) = 0.25
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1185 taattcatataataa 1199
|||||||||||||||
Sbjct: 45941 taattcatataataa 45927

Score = 28.2 bits (14), Expect(12) = 0.25
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 193 tgatgttttatcaaatat 210
||||||||||| ||||||
Sbjct: 138245 tgatgttttattaaatat 138228

Score = 28.2 bits (14), Expect(12) = 0.25
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 96 tggatattgaaatt 109
||||||||||||||
Sbjct: 154517 tggatattgaaatt 154504

Score = 28.2 bits (14), Expect(12) = 0.25
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 66 taattaaaacacca 79
||||||||||||||
Sbjct: 154772 taattaaaacacca 154759

Score = 26.3 bits (13), Expect(12) = 0.25
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 1241 tgaaaccaattgc 1253
|||||||||||||
Sbjct: 8009 tgaaaccaattgc 7997

Score = 26.3 bits (13), Expect(12) = 0.25
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 923 aattatttgattt 935
|||||||||||||
Sbjct: 51771 aattatttgattt 51759

Score = 26.3 bits (13), Expect(12) = 0.25
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 899 taacttcatcaat 911
|||||||||||||
Sbjct: 66942 taacttcatcaat 66930

Score = 26.3 bits (13), Expect(12) = 0.25
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 642 actaaaggttatg 654
|||||||||||||
Sbjct: 125160 actaaaggttatg 125148

Score = 26.3 bits (13), Expect(12) = 0.25
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 286 attaactattaaa 298
|||||||||||||
Sbjct: 133776 attaactattaaa 133764

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,515,928,109
Number of extensions: 97500543
Number of successful extensions: 8369314
Number of sequences better than 10.0: 463
Length of query: 1498
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1474
Effective length of database: 97,308,875,965
Effective search space: 143433283172410
Effective search space used: 143433283172410
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12522-1 (Contig-U12522-1Q) /CSM_Contig/Contig-U12522-1Q.Seq.d
(1498 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116977_41(AC116977|pid:none) Dictyostelium discoideum chromoso... 304 7e-86
AC116305_104(AC116305|pid:none) Dictyostelium discoideum chromos... 95 8e-18
AF250284_180(AF250284|pid:none) Amsacta moorei entomopoxvirus, c... 45 0.009
AF162221_52(AF162221|pid:none) Xestia c-nigrum granulovirus geno... 43 0.026
EU255577_47(EU255577|pid:none) Helicoverpa armigera granulovirus... 43 0.026
AJ245512_1(AJ245512|pid:none) Glomus mosseae partial mRNA for ub... 42 0.058
AY099140_1(AY099140|pid:none) Cercomonas ATCC50316 isolate pub2 ... 42 0.076
AF063866_144(AF063866|pid:none) Melanoplus sanguinipes entomopox... 42 0.076
FJ227128_48(FJ227128|pid:none) Euproctis pseudoconspersa nucleop... 42 0.076
EF035042_123(EF035042|pid:none) Spodoptera frugiperda MNPV isola... 42 0.076
DQ975458_1(DQ975458|pid:none) Capsicum annuum ubiquitin extensio... 42 0.076
EF676128_1(EF676128|pid:none) Picea sitchensis clone WS02711_O04... 42 0.076
AY099142_1(AY099142|pid:none) Cercomonas ATCC50316 isolate pub4 ... 42 0.076
AY101385_1(AY101385|pid:none) Cercomonas ATCC50316 polyubiquitin... 42 0.076
EU591746_16(EU591746|pid:none) Adoxophyes orana nucleopolyhedrov... 42 0.076
AY099144_1(AY099144|pid:none) Cercomonas ATCC50316 isolate pub6 ... 42 0.076
AY099143_1(AY099143|pid:none) Cercomonas ATCC50316 isolate pub5 ... 42 0.076
AL445565_214(AL445565|pid:none) Mycoplasma pulmonis (strain UAB ... 41 0.100
AF056625_1(AF056625|pid:none) Magnaporthe grisea strain Guy-11 p... 41 0.100
AJ937553_1(AJ937553|pid:none) Collozoum inerme partial pub gene,... 41 0.100
S55245(S55245)polyubiquitin 5 - Arabidopsis thaliana 41 0.100
AY251806_1(AY251806|pid:none) Bigelowiella natans ubiquitin/ribo... 41 0.13
AY099118_1(AY099118|pid:none) Chlorarachnion CCMP621 isolate pub... 41 0.13
AY099119_1(AY099119|pid:none) Chlorarachnion CCMP621 isolate pub... 41 0.13
AM117573_1(AM117573|pid:none) Paralvinella grasslei partial gene... 41 0.13
AY251805_1(AY251805|pid:none) Bigelowiella natans ubiquitin/ribo... 41 0.13
AC141106_28(AC141106|pid:none) Medicago truncatula clone mth2-33... 41 0.13
EU780426_128(EU780426|pid:none) Spodoptera litura nucleopolyhedr... 41 0.13
AY251803_1(AY251803|pid:none) Bigelowiella natans ubiquitin/ribo... 41 0.13
AY251793_1(AY251793|pid:none) Bigelowiella natans ubiquitin/acti... 41 0.13
FN357410_6(FN357410|pid:none) Schistosoma mansoni genome sequenc... 41 0.13
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 40 0.17
CU928169_242(CU928169|pid:none) Kluyveromyces thermotolerans str... 40 0.17
S18535(S18535) ubiquitin / ribosomal protein CEP52 - Tetrahymena... 40 0.17
AY099133_1(AY099133|pid:none) Cercomonas edax isolate pub5 polyu... 40 0.17
S42643(S42643)ubiquitin / ribosomal protein S27a - potato (fragm... 40 0.17
U03705_1(U03705|pid:none) Elphidium clavatum incertum ubiquitin ... 40 0.17
AM269955_93(AM269955|pid:none) Aspergillus niger contig An01c008... 40 0.17
AY748811_1(AY748811|pid:none) Thaumatomonas sp. DDM-2005 polyubi... 40 0.17
AF270937_43(AF270937|pid:none) Plutella xylostella granulovirus ... 40 0.17
EF134146_1(EF134146|pid:none) Karlodinium micrum strain CCMP1975... 40 0.22
EU153190_1(EU153190|pid:none) Heterocapsa triquetra clone Htr-cD... 40 0.22
AY748808_1(AY748808|pid:none) Sphaerozoum italicum polyubiquitin... 40 0.22
X01474_1(X01474|pid:none) Yeast gene fragment for polyubiquitin ... 40 0.22
EF134217_1(EF134217|pid:none) Noctiluca scintillans isolate Nsc-... 40 0.22
AB158402_2(AB158402|pid:none) Enterococcus faecium plasmid p200B... 40 0.22
JT0492(JT0492) ubiquitin 2 - Tetrahymena pyriformis (fragment) ... 40 0.22
AY862433_1(AY862433|pid:none) Navicula pelliculosa polyubiquitin... 40 0.22
AP008211_348(AP008211|pid:none) Oryza sativa (japonica cultivar-... 40 0.22
AF003089_1(AF003089|pid:none) Tetrahymena vorax ubiquitin mRNA, ... 40 0.22
JC5489(JC5489) polyubiquitin 5 - Tetrahymena thermophila &U4656... 40 0.22
AY748807_1(AY748807|pid:none) Collozoum sp. DDM-2005 polyubiquit... 40 0.22
AY521661_1(AY521661|pid:none) Pseudopleuronectes americanus 40S ... 40 0.22
AY857455_1(AY857455|pid:none) Suberites domuncula L40-ubiquitin ... 40 0.22
(P23324) RecName: Full=Ubiquitin; 40 0.22
(P20685) RecName: Full=Ubiquitin; 40 0.22
DQ504428_22(DQ504428|pid:none) Clanis bilineata nucleopolyhedros... 40 0.22
M96687_1(M96687|pid:none) Bovine viral diarrhea virus strain Osl... 40 0.22
AY229987_51(AY229987|pid:none) Cryptophlebia leucotreta granulov... 40 0.22
AJ965259_1(AJ965259|pid:none) Dasytricha ruminantium partial mRN... 40 0.29
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 40 0.29
AP003725_1(AP003725|pid:none) Oryza sativa Japonica Group genomi... 40 0.29
AJ965268_1(AJ965268|pid:none) Eudiplodinium maggii partial mRNA ... 40 0.29
DQ353761_1(DQ353761|pid:none) Ictalurus punctatus isolate C16JH0... 40 0.29
AJ965276_1(AJ965276|pid:none) Epidinium ecaudatum partial mRNA f... 40 0.29
BC049478_1(BC049478|pid:none) Danio rerio zgc:66168, mRNA (cDNA ... 40 0.29
AJ965269_1(AJ965269|pid:none) Metadinium medium partial mRNA for... 40 0.29
DQ286557_1(DQ286557|pid:none) Helicoverpa assulta ubiquitin-53aa... 40 0.29
AB099083_1(AB099083|pid:none) Bos taurus mRNA for similar to pol... 40 0.29
AM910995_106(AM910995|pid:none) Plasmodium knowlesi strain H chr... 40 0.29
AJ965257_1(AJ965257|pid:none) Dasytricha ruminantium partial mRN... 40 0.29
AF469060_1(AF469060|pid:none) Heterodera glycines ubiquitin exte... 40 0.29
AJ965263_1(AJ965263|pid:none) Isotricha prostoma partial mRNA fo... 40 0.29
BT076736_1(BT076736|pid:none) Caligus rogercresseyi clone crog-e... 40 0.29
AJ965277_1(AJ965277|pid:none) Epidinium ecaudatum partial mRNA f... 40 0.29
AB045755_1(AB045755|pid:none) Physarum polycephalum ppub1 mRNA f... 40 0.29
AB045758_1(AB045758|pid:none) Physarum polycephalum ppub4 mRNA f... 39 0.38
EU125031_1(EU125031|pid:none) Eurythoe complanata ribosomal prot... 39 0.38
AJ243802_2(AJ243802|pid:none) Kluyveromyces lactis ORF YDR183W (... 39 0.38
AF064593_1(AF064593|pid:none) Schistosoma japonicum ubiquitin/ri... 39 0.38
CQ918486_1(CQ918486|pid:none) Sequence 6 from Patent WO2004097011. 39 0.38
AJ007936_1(AJ007936|pid:none) Gibberella pulicaris ubi1 gene. &... 39 0.38
AE016816_144(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 39 0.38
CR382132_415(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 39 0.38
AF056624_1(AF056624|pid:none) Magnaporthe grisea strain Guy-11 u... 39 0.38
A29456(A29456;B29456;S48386;S38172) ubiquitin / ribosomal protei... 39 0.38
AJ698912_1(AJ698912|pid:none) Fusarium fujikuroi partial mRNA fo... 39 0.38
CR380950_216(CR380950|pid:none) Candida glabrata strain CBS138 c... 39 0.38
CS362623_1(CS362623|pid:none) Sequence 3 from Patent WO2006073320. 39 0.38
AB045756_1(AB045756|pid:none) Physarum polycephalum ppub2 mRNA f... 39 0.38
AE014188_117(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.38
CR382139_690(CR382139|pid:none) Debaryomyces hansenii strain CBS... 39 0.38
AF056623_1(AF056623|pid:none) Magnaporthe grisea strain Guy-11 u... 39 0.38
FN392322_794(FN392322|pid:none) Pichia pastoris GS115 chromosome... 39 0.38
CU928179_320(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 39 0.38
DQ914562_1(DQ914562|pid:none) Porphyra yezoensis polyubiquitin (... 39 0.38
AP007155_1027(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 39 0.38
AY303168_2(AY303168|pid:none) Degron tagging vector pSMUG2+ beta... 39 0.38
Y17558_1(Y17558|pid:none) Candida albicans UB14 gene. 39 0.38
AJ243800_3(AJ243800|pid:none) Kluyveromyces lactis rim101 (parti... 39 0.38
CU928179_267(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 39 0.38
U17246_2(U17246|pid:none) Saccharomyces cerevisiae chromosome XI... 39 0.38
CS362629_1(CS362629|pid:none) Sequence 9 from Patent WO2006073320. 39 0.38
AY251802_1(AY251802|pid:none) Gymnochlora stellata ubiquitin/act... 39 0.38
CU928175_164(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 39 0.38
U32627_1(U32627|pid:none) Candida albicans ubiquitin precursor (... 39 0.38
CQ918481_1(CQ918481|pid:none) Sequence 1 from Patent WO2004097011. 39 0.38
EF144403_1(EF144403|pid:none) Populus trichocarpa clone PX0019_E... 39 0.38
AB045757_1(AB045757|pid:none) Physarum polycephalum ppub3 mRNA f... 39 0.38
UQBY(D29456;S64790;B22696;A22696) polyubiquitin 5 - yeast (Sacch... 39 0.38
FM992690_680(FM992690|pid:none) Candida dubliniensis CD36 chromo... 39 0.38
X98063_1(X98063|pid:none) P.sylvestris mRNA for polyubiquitin. 39 0.38
M31426_1(M31426|pid:none) Synthetic yeast (S.cerevisiae) ubiquit... 39 0.38
DQ914563_1(DQ914563|pid:none) Porphyra yezoensis polyubiquitin (... 39 0.38
CR382131_778(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 39 0.38
AE017341_332(AE017341|pid:none) Cryptococcus neoformans var. neo... 39 0.38
DQ673413_1(DQ673413|pid:none) Diaphorina citri putative ubiquiti... 39 0.38
AF188158_1(AF188158|pid:none) Oxytricha trifallax ubiquitin gene... 39 0.38
U03702_1(U03702|pid:none) Affinetrina eburnea ubiquitin gene, pa... 39 0.38
CR380953_349(CR380953|pid:none) Candida glabrata strain CBS138 c... 39 0.38
AL031854_8(AL031854|pid:none) S.pombe chromosome II cosmid c337.... 39 0.38
AM117576_1(AM117576|pid:none) Alvinella caudata partial gene for... 39 0.50
FN323957_1(FN323957|pid:none) Schistosoma japonicum isolate Anhu... 39 0.50
DQ019224_1(DQ019224|pid:none) Gracilaria lemaneiformis ubiquitin... 39 0.50
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526... 39 0.50
BT046483_1(BT046483|pid:none) Salmo salar clone ssal-evd-569-157... 39 0.50
M33018_1(M33018|pid:none) D.melanogaster ubiquitin gene, 5' end. 39 0.50
Z28649_1(Z28649|pid:none) Acetabularia cliftonii gene for polyub... 39 0.50
Z22614_1(Z22614|pid:none) T.pyriformis polyubiquitin and 5S rRNA... 39 0.50
AY375335_1(AY375335|pid:none) Gossypium barbadense fiber polyubi... 39 0.50
AY048769_1(AY048769|pid:none) Choristoneura fumiferana granulovi... 39 0.50
AL662988_4(AL662988|pid:none) Oryza sativa genomic DNA, chromoso... 39 0.50
AY954394_1(AY954394|pid:none) Oryza sativa (japonica cultivar-gr... 39 0.50
U03707_1(U03707|pid:none) Quinqueloculina seminulum ubiquitin ge... 39 0.50
(P13117) RecName: Full=Ubiquitin; 39 0.50
(Q8C5U9) RecName: Full=Ubiquilin-3; &AK077072_1(AK077072|pid:no... 39 0.50
(P49634) RecName: Full=Ubiquitin; 39 0.50
AF512031_25(AF512031|pid:none) Choristoneura fumiferana MNPV pol... 39 0.50
EU309041_58(EU309041|pid:none) Orgyia leucostigma NPV isolate CF... 39 0.50
U86599_1(U86599|pid:none) Pestivirus type 1 cytopathic genomic R... 39 0.50
AF175521_1(AF175521|pid:none) Emericella nidulans UBI1 (ubi1) mR... 39 0.50
(P42740) RecName: Full=Ubiquitin; 39 0.50
X87156_1(X87156|pid:none) Acanthamoeba sp. 4b3 polyubiquitin gene. 39 0.50
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 39 0.50
AF517849_1(AF517849|pid:none) Griffithsia japonica isolate Gj532... 39 0.50
AM087928_1(AM087928|pid:none) Nereis diversicolor mitochondrial ... 39 0.50
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019... 39 0.50
UQNC(S05323) polyubiquitin 4 - Neurospora crassa &X13140_1(X131... 39 0.50
AF088848_1(AF088848|pid:none) Capsicum chinense polyubiquitin (U... 39 0.50
(P42739) RecName: Full=Ubiquitin; 39 0.50
AM040014_1(AM040014|pid:none) Eucinetus sp. APV-2005 mRNA for ub... 39 0.50
AJ575140_1(AJ575140|pid:none) Sordaria macrospora partial smu599... 39 0.50
AC149642_19(AC149642|pid:none) Medicago truncatula chromosome 2 ... 39 0.50
AJ277169_1(AJ277169|pid:none) Galdieria sulphuraria mRNA for ubi... 39 0.50
FN321000_1(FN321000|pid:none) Schistosoma japonicum isolate Anhu... 39 0.50
BT071477_1(BT071477|pid:none) Picea sitchensis clone WS02916_A12... 39 0.50
BC167318_1(BC167318|pid:none) Xenopus tropicalis ras homolog gen... 39 0.65
AF093505_1(AF093505|pid:none) Saccharum hybrid cultivar H32-8560... 39 0.65
L31492_1(L31492|pid:none) Caenorhabditis elegans ubiquitin/ribos... 39 0.65
AL161503_16(AL161503|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.65
Y17004_1(Y17004|pid:none) Suberites domuncula mRNA for monoubiqu... 39 0.65
BT078470_1(BT078470|pid:none) Lepeophtheirus salmonis Pacific fo... 39 0.65
AY251809_1(AY251809|pid:none) Lotharella globosa ubiquitin/ribos... 39 0.65
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 39 0.65
(P0C033) RecName: Full=Ubiquitin-like protein 1; 39 0.65
BC078037_1(BC078037|pid:none) Xenopus laevis hypothetical LOC503... 39 0.65
AY099126_1(AY099126|pid:none) Lotharella globosa isolate pub1 po... 39 0.65
AY286305_1(AY286305|pid:none) Heterodera schachtii ubiquitin ext... 39 0.65
UQJNI(S17740;S14579) ubiquitin precursor - Phytophthora infestan... 39 0.65
BC019850_1(BC019850|pid:none) Mus musculus ubiquitin B, mRNA (cD... 39 0.65
DQ011576_1(DQ011576|pid:none) Euphorbia characias polyubiquitin ... 39 0.65
M30305_1(M30305|pid:none) A.californica nuclear polyhedrosis vir... 39 0.65
AY251808_1(AY251808|pid:none) Lotharella globosa ubiquitin/ribos... 39 0.65
AJ871355_1(AJ871355|pid:none) Nyctotherus ovalis partial gene fo... 39 0.65
EU139240_1(EU139240|pid:none) Flustra foliacea ubiquinated putat... 39 0.65
AF116772_1(AF116772|pid:none) Lilium longiflorum polyubiquitin m... 39 0.65
BC077840_1(BC077840|pid:none) Xenopus laevis hypothetical LOC503... 39 0.65
AY732488_1(AY732488|pid:none) Homo sapiens ubiquitin C splice va... 39 0.65
DQ115333_1(DQ115333|pid:none) Caenorhabditis remanei ubiquitin p... 39 0.65
AJ937550_1(AJ937550|pid:none) Bathysiphon sp. 3980 partial pub g... 39 0.65
DQ837165_21(DQ837165|pid:none) Ecotropis obliqua NPV strain A1, ... 39 0.65
S43306(S43306)polyubiquitin 6 - Geodia cydonium 39 0.65
EU139195_1(EU139195|pid:none) Flustra foliacea ubiquinated putat... 39 0.65
S62909(S62909;S12577) ubiquitin precursor - Tetrahymena pyriform... 39 0.65
AB021972_1(AB021972|pid:none) Bombyx mori UBI1 mRNA for ubiquiti... 39 0.65
AY961529_1(AY961529|pid:none) Lysiphlebus testaceipes ribosomal ... 39 0.65
AY771321_1(AY771321|pid:none) Scleronephthya gracillimum ubuiqui... 39 0.65
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 39 0.65
S29238(S29238;S55459;S21384) ubiquitin - Entamoeba histolytica ... 39 0.65
(P22589) RecName: Full=Ubiquitin; 39 0.65
AF104025_1(AF104025|pid:none) Bovine viral diarrhea virus-2 subg... 39 0.65
AY099116_1(AY099116|pid:none) Haynesina germanica isolate pub1 p... 39 0.65
EU302560_1(EU302560|pid:none) Lineus viridis ribosomal protein r... 39 0.65
AY251801_1(AY251801|pid:none) Lotharella globosa ubiquitin/actin... 39 0.65
(P14792) RecName: Full=Ubiquitin; &(P59669) RecName: Fu &EF1015... 39 0.65
AY961507_1(AY961507|pid:none) Lysiphlebus testaceipes ribosomal ... 39 0.65
AY485340_1(AY485340|pid:none) Schistosoma mansoni ubiquitin mRNA... 39 0.65
Y12082_1(Y12082|pid:none) Suberites domuncula mRNA for polyubiqu... 39 0.65
AY251796_1(AY251796|pid:none) Lotharella amoeboformis ubiquitin/... 39 0.65
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 39 0.65
AF400203_1(AF400203|pid:none) Spodoptera frugiperda ribosomal pr... 39 0.65
AM259605_1(AM259605|pid:none) Salmo salar partial mRNA for ubiqu... 39 0.65
BT076264_1(BT076264|pid:none) Caligus rogercresseyi clone crog-e... 39 0.65
AF061807_1(AF061807|pid:none) Elaeagnus umbellata polyubiquitin ... 38 0.84
EF146368_1(EF146368|pid:none) Populus trichocarpa clone WS0117_J... 38 0.84
AJ309010_1(AJ309010|pid:none) Nicotiana tabacum mRNA for polyubi... 38 0.84
UQSY(S02222)ubiquitin precursor - soybean (fragment) 38 0.84
EU348739_1(EU348739|pid:none) Adonis aestivalis var. palaestina ... 38 0.84
AE015450_255(AE015450|pid:none) Mycoplasma gallisepticum strain ... 38 0.84
M74156_1(M74156|pid:none) Nicotiana sylvestris (clone 6PU4) pent... 38 0.84
S40611(S40611;S34707) polyubiquitin 5 - Volvox carteri &X74214_... 38 0.84
UQFS(S03599)ubiquitin precursor - common sunflower (fragment) 38 0.84
AM494972_376(AM494972|pid:none) Leishmania braziliensis chromoso... 38 0.84
DQ336883_1(DQ336883|pid:none) Zinnia elegans putative pentameric... 38 0.84
L22576_1(L22576|pid:none) Solanum tuberosum ubiquitin/ribosomal ... 38 0.84
EF120638_1(EF120638|pid:none) Hevea brasiliensis ubiquitin exten... 38 0.84
S12161(S12161)polyubiquitin - large-leaved lupine (fragment) 38 0.84
EU953492_1(EU953492|pid:none) Zea mays clone 1424191 unknown mRNA. 38 0.84
EU284858_1(EU284858|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 38 0.84
AM494963_268(AM494963|pid:none) Leishmania braziliensis chromoso... 38 0.84
AJ965275_1(AJ965275|pid:none) Polyplastron multivesiculatum part... 38 0.84
(P19848) RecName: Full=Ubiquitin; &AB210844_1(AB210844|pid:none... 38 0.84
AM466823_1(AM466823|pid:none) Vitis vinifera contig VV78X042351.... 38 0.84
AJ416499_1(AJ416499|pid:none) Pleurotus ostreatus partial mRNA f... 38 0.84
DQ320121_3(DQ320121|pid:none) Binary vector pBINPLUS/ARS, comple... 38 0.84
EF145452_1(EF145452|pid:none) Populus trichocarpa clone WS01124_... 38 0.84
AM910993_48(AM910993|pid:none) Plasmodium knowlesi strain H chro... 38 0.84
AF298826_1(AF298826|pid:none) Prunus avium ubiquitin/ribosomal p... 38 0.84
CP000592_120(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 38 0.84
JH0226(JH0226) ubiquitin / ribosomal protein S27a.1 - barley &M... 38 0.84
AP008971_1499(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 38 0.84
AB033601_1(AB033601|pid:none) Cucumis melo mRNA for polyubiquiti... 38 0.84
EF146180_1(EF146180|pid:none) Populus trichocarpa clone WS0116_A... 38 0.84
AP008215_962(AP008215|pid:none) Oryza sativa (japonica cultivar-... 38 0.84
AJ965273_1(AJ965273|pid:none) Polyplastron multivesiculatum part... 38 0.84
EU328536_1(EU328536|pid:none) Lolium temulentum ubiquitin (UBQ) ... 38 0.84
AB005240_15(AB005240|pid:none) Arabidopsis thaliana genomic DNA,... 38 0.84
JQ1728(JQ1728)ubiquitin precursor - Arabidopsis thaliana (fragme... 38 0.84
EU586197_1(EU586197|pid:none) Malus x domestica cultivar Fuji po... 38 0.84
EU436761_1(EU436761|pid:none) Sandersonia aurantiaca clone SAND7... 38 0.84
EU586198_1(EU586198|pid:none) Malus x domestica cultivar Fuji po... 38 0.84
AM426496_4(AM426496|pid:none) Vitis vinifera contig VV78X245184.... 38 0.84
AY099129_1(AY099129|pid:none) Cercomonas edax isolate pub1 polyu... 38 0.84
AY086062_1(AY086062|pid:none) Arabidopsis thaliana clone 20908 m... 38 0.84
EU959003_1(EU959003|pid:none) Zea mays clone 208868 40S ribosoma... 38 0.84
FN315483_1(FN315483|pid:none) Schistosoma japonicum isolate Anhu... 38 0.84
DQ118117_1(DQ118117|pid:none) Lupinus albus polyubiquitin mRNA, ... 38 0.84
AY372537_1(AY372537|pid:none) Cucumis sativus ubiquitin extensio... 38 0.84
BT052956_1(BT052956|pid:none) Medicago truncatula clone MTYFL_FM... 38 0.84
AF499596_49(AF499596|pid:none) Phthorimaea operculella granulovi... 38 0.84
BT051458_1(BT051458|pid:none) Medicago truncatula clone MTYF1_F2... 38 0.84
U29160_1(U29160|pid:none) Zea mays clone MubG10 ubiquitin fusion... 38 0.84
AC152972_3(AC152972|pid:none) Oryza sativa (japonica cultivar-gr... 38 0.84
BT035083_1(BT035083|pid:none) Zea mays full-length cDNA clone ZM... 38 0.84
AF502575_1(AF502575|pid:none) Musa acuminata ubiquitin (UBQ1) ge... 38 0.84
EF676259_1(EF676259|pid:none) Picea sitchensis clone WS02724_L09... 38 0.84
U84969_1(U84969|pid:none) Arabidopsis thaliana ubiquitin (UBQ11)... 38 0.84
EU700059_1(EU700059|pid:none) Humulus lupulus cultivar Cascade c... 38 0.84
CR954212_116(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 38 0.84
AJ965270_1(AJ965270|pid:none) Polyplastron multivesiculatum part... 38 0.84
EU081898_1(EU081898|pid:none) Triticum aestivum polyubiquitin (W... 38 0.84
EU952584_1(EU952584|pid:none) Zea mays clone 1283821 40S ribosom... 38 0.84
AF502576_1(AF502576|pid:none) Musa acuminata ubiquitin (UBQ2) ge... 38 0.84
AY042884_1(AY042884|pid:none) Arabidopsis thaliana Unknown prote... 38 0.84
AF528678_1(AF528678|pid:none) Arabidopsis lyrata putative polyub... 38 0.84
AF035383_1(AF035383|pid:none) Arabidopsis thaliana polyubiquitin... 38 0.84
DQ887067_1(DQ887067|pid:none) Arachis hypogaea polyubiquitin 10 ... 38 0.84
AF348700_1(AF348700|pid:none) Homo sapiens ubiquitin A-52 residu... 38 0.84
EF147813_1(EF147813|pid:none) Populus trichocarpa clone WS0125_D... 38 0.84
BT061197_1(BT061197|pid:none) Zea mays full-length cDNA clone ZM... 38 0.84
T12035(T12035) polyubiquitin 4.4 - kidney bean &U77939_1(U77939... 38 0.84
EU952265_1(EU952265|pid:none) Zea mays clone 1273639 unknown mRNA. 38 0.84
X07451_1(X07451|pid:none) Trypanosoma cruzi ubiquitin gene. &X0... 38 0.84
DQ267236_1(DQ267236|pid:none) Tragopogon dubius clone TDUBUBQ pu... 38 0.84
FN322451_1(FN322451|pid:none) Schistosoma japonicum isolate Anhu... 38 0.84
AF429429_1(AF429429|pid:none) Olea europaea polyubiquitin OUB1 m... 38 0.84
DQ793132_1(DQ793132|pid:none) Arabidopsis thaliana ubiquitin (UB... 38 0.84
AP005393_13(AP005393|pid:none) Oryza sativa Japonica Group genom... 38 0.84
AY785814_1(AY785814|pid:none) Oryza sativa (indica cultivar-grou... 38 0.84
A63899_1(A63899|pid:none) Sequence 24 from Patent WO9723633. &C... 38 0.84
AJ965272_1(AJ965272|pid:none) Polyplastron multivesiculatum part... 38 0.84
S40239(S40239) ubiquitin/ribosomal protein S27a fusion protein -... 38 0.84
EU586196_1(EU586196|pid:none) Malus x domestica cultivar Fuji po... 38 0.84
CP001327_692(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 38 0.84
AF060232_1(AF060232|pid:none) Botryotinia fuckeliana monoubiquit... 38 0.84
AB018107_9(AB018107|pid:none) Arabidopsis thaliana genomic DNA, ... 38 0.84
AF528705_1(AF528705|pid:none) Arabidopsis thaliana ecotype Lisse... 38 0.84
AY452182_1(AY452182|pid:none) Plasmodiophora brassicae polyubiqu... 38 0.84
DQ200392_1(DQ200392|pid:none) Solanum tuberosum clone 068E12 ubi... 38 0.84
U26831_1(U26831|pid:none) Solanum tuberosum polyubiquitin gene, ... 38 0.84
AF285161_1(AF285161|pid:none) Mus musculus cell-line C3H/He poly... 38 0.84
AK340297_1(AK340297|pid:none) Acyrthosiphon pisum ACYPI000076 mR... 38 0.84
AJ437537_1(AJ437537|pid:none) Oryza sativa partial mRNA for poly... 38 0.84
UQUTC(S00510) ubiquitin precursor - Trypanosoma cruzi (fragment)... 38 0.84
AJ965274_1(AJ965274|pid:none) Polyplastron multivesiculatum part... 38 0.84
S55244(S55244;S61069)polyubiquitin 4 - Arabidopsis thaliana 38 0.84
AF060501_1(AF060501|pid:none) Botryotinia fuckeliana polyubiquit... 38 0.84
BT000701_1(BT000701|pid:none) Arabidopsis thaliana clone RAFL08-... 38 0.84
CP001333_164(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 38 0.84
AY478418_1(AY478418|pid:none) Clusia minor polyubiquitin (Ubq1) ... 38 0.84
AB047855_1(AB047855|pid:none) Oryza sativa Ub-CEP52-1 gene for u... 38 0.84
EF070591_1(EF070591|pid:none) Maconellicoccus hirsutus clone WHM... 38 0.84
AF528710_1(AF528710|pid:none) Arabidopsis thaliana ecotype Ita-0... 38 0.84
AJ844617_1(AJ844617|pid:none) Plantago major mRNA for polyubiqui... 38 0.84
DQ445914_1(DQ445914|pid:none) Gladiolus grandiflorus polyubiquit... 38 0.84
AE016819_518(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 38 0.84
BT051346_1(BT051346|pid:none) Medicago truncatula clone MTYF1_F2... 38 0.84
DQ104334_1(DQ104334|pid:none) Morus mongolica ubiquitin monomer ... 38 0.84
S17436(S17436) ubiquitin precursor UbB2 - common sunflower (frag... 38 0.84
BT051253_1(BT051253|pid:none) Medicago truncatula clone MTYF1_F2... 38 0.84
EF101928_203(EF101928|pid:none) Acanthocystis turfacea Chlorella... 38 0.84
EF144484_1(EF144484|pid:none) Populus trichocarpa clone PX0019_L... 38 0.84
AB090878_1(AB090878|pid:none) Aster tripolium mRNA for polyubiqu... 38 0.84
AF184279_1(AF184279|pid:none) Oryza sativa polyubiquitin (RUBQ1)... 38 0.84
AE016820_243(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 38 0.84
AF436850_1(AF436850|pid:none) Cucumis melo polyubiquitin mRNA, p... 38 0.84
AY117055_1(AY117055|pid:none) Gossypium herbaceum putative polyu... 38 0.84
AF031628_1(AF031628|pid:none) Schizophyllum commune polyubiquiti... 38 0.84
AP008212_1813(AP008212|pid:none) Oryza sativa (japonica cultivar... 38 0.84
AY098526_1(AY098526|pid:none) Ananas comosus tetrameric ubiquiti... 38 0.84
AM441378_1(AM441378|pid:none) Vitis vinifera contig VV78X123789.... 38 0.84
L81141_1(L81141|pid:none) Pisum sativum (Alaska) ubiquitin (PUB3... 38 0.84
CP001325_12(CP001325|pid:none) Micromonas sp. RCC299 chromosome ... 38 0.84
EF667355_1(EF667355|pid:none) Trypanosoma carassii ubiquitin-fus... 38 0.84
UQKM(S06598;S19543;S21687) ubiquitin / ribosomal protein CEP52 -... 38 0.84
AK127995_1(AK127995|pid:none) Homo sapiens cDNA FLJ46113 fis, cl... 38 0.84
U43128_1(U43128|pid:none) Naegleria fowleri ubiquitin mRNA, part... 38 0.84
AY275680_1(AY275680|pid:none) Hevea brasiliensis ubiquitin mRNA,... 38 0.84
AC005292_28(AC005292|pid:none) Genomic sequence for Arabidopsis ... 38 0.84
EU967930_1(EU967930|pid:none) Zea mays clone 311453 40S ribosoma... 38 0.84
AY297059_1(AY297059|pid:none) Triticum aestivum ubiquitin (WUB1)... 38 0.84
EU972519_1(EU972519|pid:none) Zea mays clone 382655 unknown mRNA. 38 0.84
DQ793134_1(DQ793134|pid:none) Arabidopsis thaliana ubiquitin (UB... 38 0.84
DQ839403_1(DQ839403|pid:none) Morus bombycis ubiquitin extension... 38 0.84
BT073733_1(BT073733|pid:none) Oncorhynchus mykiss clone omyk-evo... 38 0.84
BT052981_1(BT052981|pid:none) Medicago truncatula clone MTYFL_FM... 38 0.84
L21898_1(L21898|pid:none) Brassica rapa ubiquitin/ribosomal prot... 38 0.84
AC004512_13(AC004512|pid:none) Arabidopsis thaliana chromosome 1... 38 0.84
EF576109_1(EF576109|pid:none) Oryza sativa (indica cultivar-grou... 38 0.84
EF145408_1(EF145408|pid:none) Populus trichocarpa clone WS01124_... 38 0.84
D12776_1(D12776|pid:none) Oryza sativa Japonica Group mRNA for p... 38 0.84
EF145885_1(EF145885|pid:none) Populus trichocarpa clone WS0114_A... 38 0.84
AE017351_259(AE017351|pid:none) Cryptococcus neoformans var. neo... 38 0.84
AK228265_1(AK228265|pid:none) Arabidopsis thaliana mRNA for poly... 38 0.84
U29158_1(U29158|pid:none) Zea mays polyubiquitin (MubC5) mRNA, c... 38 0.84
AY251797_1(AY251797|pid:none) Lotharella amoeboformis ubiquitin/... 38 0.84
A25062(A25062) ubiquitin precursor - barley (fragment) &X04133_... 38 0.84
S30151(S30151;S30152) polyubiquitin 6 - parsley &X64344_1(X6434... 38 0.84
EF470423_1(EF470423|pid:none) Lolium perenne ubiquitin (UBQ) mRN... 38 0.84
EU952980_1(EU952980|pid:none) Zea mays clone 1372904 unknown mRNA. 38 0.84
S17435(S17435;S17437) polyubiquitin 6 - common sunflower &X5700... 38 0.84
S34285(S34285) polyubiquitin - tomato &X73156_1(X73156|pid:none) 38 0.84
AC004411_6(AC004411|pid:none) Arabidopsis thaliana chromosome 2 ... 38 0.84
EF576130_1(EF576130|pid:none) Oryza sativa (indica cultivar-grou... 38 0.84
AP005190_3(AP005190|pid:none) Oryza sativa Japonica Group genomi... 38 0.84
DQ438989_1(DQ438989|pid:none) Malus x domestica polyubiquitin mR... 38 0.84
AJ965271_1(AJ965271|pid:none) Polyplastron multivesiculatum part... 38 0.84
FN315480_1(FN315480|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
FN316690_1(FN316690|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
FJ438516_1(FJ438516|pid:none) Epinephelus coioides ubiquitin C v... 38 1.1
BC168051_1(BC168051|pid:none) Xenopus tropicalis cDNA clone MGC:... 38 1.1
AK010964_1(AK010964|pid:none) Mus musculus 13 days embryo liver ... 38 1.1
S11248(S11248)ubiquitin / ribosomal protein CEP52 - mouse (fragm... 38 1.1
BC049473_1(BC049473|pid:none) Danio rerio zgc:172187, mRNA (cDNA... 38 1.1
BC127395_1(BC127395|pid:none) Danio rerio zgc:153686, mRNA (cDNA... 38 1.1
AF395864_1(AF395864|pid:none) Branchiostoma belcheri ubiquitin m... 38 1.1
AY752852_1(AY752852|pid:none) Culicoides sonorensis clone CsUB1 ... 38 1.1
AB003730_1(AB003730|pid:none) Homo sapiens gene for polyubiquiti... 38 1.1
AB170649_1(AB170649|pid:none) Macaca fascicularis brain cDNA clo... 38 1.1
AF506022_1(AF506022|pid:none) Tribolium castaneum isolate pCPUb ... 38 1.1
FN315482_1(FN315482|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
EU433567_1(EU433567|pid:none) Monochamus alternatus ubiquitin mR... 38 1.1
DQ363465_1(DQ363465|pid:none) Ictalurus punctatus clone C153BB02... 38 1.1
BC045004_1(BC045004|pid:none) Xenopus laevis similar to ubiquiti... 38 1.1
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu... 38 1.1
FN315486_1(FN315486|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
AB036060_1(AB036060|pid:none) Oncorhynchus mykiss mRNA for ubiqu... 38 1.1
AK300882_1(AK300882|pid:none) Homo sapiens cDNA FLJ51326 complet... 38 1.1
AF322415_1(AF322415|pid:none) Synthetic construct HPV type 6b hu... 38 1.1
BC006680_1(BC006680|pid:none) Mus musculus ubiquitin C, mRNA (cD... 38 1.1
FN316698_1(FN316698|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
FN316688_1(FN316688|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
AF104020_1(AF104020|pid:none) Bovine viral diarrhea virus-2 subg... 38 1.1
BT057945_1(BT057945|pid:none) Salmo salar clone ssal-rgf-504-035... 38 1.1
BT058181_1(BT058181|pid:none) Salmo salar clone Contig1385 Ubiqu... 38 1.1
AY819759_1(AY819759|pid:none) Homo sapiens ubiquitin C splice va... 38 1.1
BC021837_1(BC021837|pid:none) Mus musculus ubiquitin C, mRNA (cD... 38 1.1
AB032025_1(AB032025|pid:none) Canis lupus familiaris mRNA for ub... 38 1.1
AF321441_1(AF321441|pid:none) Galleria mellonella polyubiquitin ... 38 1.1
AB122067_1(AB122067|pid:none) Crassostrea gigas mRNA for polyubi... 38 1.1
AE014134_1952(AE014134|pid:none) Drosophila melanogaster chromos... 38 1.1
BT043890_1(BT043890|pid:none) Salmo salar clone HM4_3735 ribosom... 38 1.1
AK003190_1(AK003190|pid:none) Mus musculus 18-day embryo whole b... 38 1.1
D63791_1(D63791|pid:none) Homo sapiens UbC gene for polyubiquiti... 38 1.1
AY813866_1(AY813866|pid:none) Schistosoma japonicum clone SJCHGC... 38 1.1
AB098891_1(AB098891|pid:none) Bos taurus mRNA for similar to ubi... 38 1.1
AK291539_1(AK291539|pid:none) Homo sapiens cDNA FLJ75516 complet... 38 1.1
AL117514_1(AL117514|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0... 38 1.1
EU558350_1(EU558350|pid:none) Phoronis muelleri putative ubiquit... 38 1.1
BT058174_1(BT058174|pid:none) Salmo salar clone Contig1232 Ubiqu... 38 1.1
BC114001_1(BC114001|pid:none) Bos taurus polyubiquitin, mRNA (cD... 38 1.1
BC093445_1(BC093445|pid:none) Homo sapiens ubiquitin C, mRNA (cD... 38 1.1
AK007273_1(AK007273|pid:none) Mus musculus adult male testis cDN... 38 1.1
FN316689_1(FN316689|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
UQFFM(A02575)ubiquitin - Mediterranean fruit fly 38 1.1
DQ216251_1(DQ216251|pid:none) Taeniopygia guttata clone 0063P002... 38 1.1
BT079002_1(BT079002|pid:none) Esox lucius clone eluc-evq-516-246... 38 1.1
AB009010_1(AB009010|pid:none) Homo sapiens UbC1 mRNA for polyubi... 38 1.1
AY072292_1(AY072292|pid:none) Spodoptera frugiperda ribosomal pr... 38 1.1
S11296(S11296)polyubiquitin (clone arf3) - mouse (fragment) 38 1.1
AK018706_1(AK018706|pid:none) Mus musculus adult male kidney cDN... 38 1.1
DQ673439_1(DQ673439|pid:none) Diaphorina citri putative ubiquiti... 38 1.1
A96580(A96580) hypothetical protein F15I1.4 [imported] - Arabido... 38 1.1
AY394942_1(AY394942|pid:none) Danio rerio clone RK046A2G11 ubiqu... 38 1.1
BC167447_1(BC167447|pid:none) Danio rerio zgc:172187, mRNA (cDNA... 38 1.1
D63782_1(D63782|pid:none) Cricetulus sp. gene for polyubiquitin,... 38 1.1
AY327402_26(AY327402|pid:none) Choristoneura fumiferana defectiv... 38 1.1
AK013873_1(AK013873|pid:none) Mus musculus 12 days embryo head c... 38 1.1
DQ216246_1(DQ216246|pid:none) Taeniopygia guttata clone 0058P001... 38 1.1
AF104026_1(AF104026|pid:none) Bovine viral diarrhea virus-2 subg... 38 1.1
EF473650_1(EF473650|pid:none) Sus scrofa ubiquitin B (UBB) gene,... 38 1.1
AK168448_1(AK168448|pid:none) Mus musculus 17 days embryo kidney... 38 1.1
AL953908_5(AL953908|pid:none) Zebrafish DNA sequence from clone ... 38 1.1
AF323508_1(AF323508|pid:none) Synthetic construct HPV type 6b hu... 38 1.1
AB291582_1(AB291582|pid:none) Solea senegalensis rpS27a mRNA for... 38 1.1
BT073985_1(BT073985|pid:none) Oncorhynchus mykiss clone omyk-evo... 38 1.1
FN316697_1(FN316697|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
BC054976_1(BC054976|pid:none) Xenopus laevis ubiquitin C, mRNA (... 38 1.1
DQ216234_1(DQ216234|pid:none) Taeniopygia guttata clone 0058P001... 38 1.1
DQ445503_1(DQ445503|pid:none) Graphocephala atropunctata isolate... 38 1.1
I45964(I45964) polyubiquitin - bovine (fragment) &M62428_1(M624... 38 1.1
BC157791_1(BC157791|pid:none) Xenopus tropicalis hypothetical pr... 38 1.1
(P0C274) RecName: Full=Ubiquitin; &(P62972) RecName: Fu &(P6297... 38 1.1
FN323949_1(FN323949|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
BT058428_1(BT058428|pid:none) Salmo salar clone Contig656 Ubiqui... 38 1.1
FN323948_1(FN323948|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
CR940347_507(CR940347|pid:none) Theileria annulata strain Ankara... 38 1.1
AF104023_1(AF104023|pid:none) Bovine viral diarrhea virus-2 subg... 38 1.1
AY571670_1(AY571670|pid:none) Gromia oviformis polyubiquitin gen... 38 1.1
FN320998_1(FN320998|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
UQUYSF(B34813)ubiquitin - fall armyworm (fragment) 38 1.1
DQ216239_1(DQ216239|pid:none) Taeniopygia guttata clone 0058P004... 38 1.1
L13783_1(L13783|pid:none) Bovine viral diarrhea virus p125 prote... 38 1.1
BT075650_1(BT075650|pid:none) Osmerus mordax clone omor-rgc-508-... 38 1.1
AF104024_1(AF104024|pid:none) Bovine viral diarrhea virus-2 subg... 38 1.1
(O46543) RecName: Full=Ubiquitin; 38 1.1
AF045474_1(AF045474|pid:none) Schistosoma mansoni polyubiquitin ... 38 1.1
X94621_1(X94621|pid:none) C.alpestris ubiquitin gene. 38 1.1
AM040011_1(AM040011|pid:none) Agriotes lineatus mRNA for ubiquit... 38 1.1
AY254344_1(AY254344|pid:none) Schistosoma japonicum polyubiquiti... 38 1.1
X08013_1(X08013|pid:none) Chinese hamster mRNA for ubiquitin. 38 1.1
M17597_1(M17597|pid:none) Human poly-ubiquitin mRNA, complete cds. 38 1.1
BC080583_1(BC080583|pid:none) Homo sapiens cDNA clone IMAGE:2822... 38 1.1
BT083357_1(BT083357|pid:none) Anoplopoma fimbria clone afim-evh-... 38 1.1
D83208_1(D83208|pid:none) Cavia cobaya mRNA for ubiquitin, compl... 38 1.1
DQ216250_1(DQ216250|pid:none) Taeniopygia guttata clone 0058P002... 38 1.1
AF104021_1(AF104021|pid:none) Bovine viral diarrhea virus-2 subg... 38 1.1
DQ986352_1(DQ986352|pid:none) Synthetic construct ubiquitin K48R... 38 1.1
EU247124_1(EU247124|pid:none) Lycosa singoriensis 60S ribosomal ... 38 1.1
A62334_1(A62334|pid:none) Sequence 22 from Patent WO9712992. &A... 38 1.1
DQ420617_1(DQ420617|pid:none) Anser anser ubiquitin C II mRNA, c... 38 1.1
AE014134_744(AE014134|pid:none) Drosophila melanogaster chromoso... 38 1.1
AB098769_1(AB098769|pid:none) Bos taurus mRNA for similar to pol... 38 1.1
FN323968_1(FN323968|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
BT048991_1(BT048991|pid:none) Salmo salar clone ssal-evf-534-259... 38 1.1
AF361365_1(AF361365|pid:none) Oncorhynchus mykiss polyubiquitin ... 38 1.1
X02650_1(X02650|pid:none) Chicken mRNA for ubiquitin. 38 1.1
AJ388512_1(AJ388512|pid:none) Canis familiaris mRNA for ubiquiti... 38 1.1
M62429_1(M62429|pid:none) Bovine polyubiquitin mRNA, 3' end, clo... 38 1.1
U61404_1(U61404|pid:none) Manduca sexta polyubiquitin gene, 5' r... 38 1.1
AY752793_1(AY752793|pid:none) Culicoides sonorensis clone CsARU ... 38 1.1
BT073019_1(BT073019|pid:none) Oncorhynchus mykiss clone omyk-evn... 38 1.1
D17296_1(D17296|pid:none) Rattus norvegicus mRNA for polyubiquit... 38 1.1
AM049143_1(AM049143|pid:none) Dascillus cervinus mRNA for riboso... 38 1.1
AB111967_1(AB111967|pid:none) Bovine viral diarrhea virus T-20 g... 38 1.1
BT043771_1(BT043771|pid:none) Salmo salar clone HM6_1209 ubiquit... 38 1.1
M11691_1(M11691|pid:none) Synthetic beta-galactosidase/mouse ubi... 38 1.1
AK341054_1(AK341054|pid:none) Acyrthosiphon pisum ACYPI000086 mR... 38 1.1
FN316696_1(FN316696|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
AB089615_1(AB089615|pid:none) Gorilla gorilla UbC gene for polyu... 38 1.1
AB099044_1(AB099044|pid:none) Bos taurus mRNA for similar to pol... 38 1.1
BC053371_1(BC053371|pid:none) Homo sapiens ribosomal protein S27... 38 1.1
M24507_1(M24507|pid:none) Synthetic human ubiquitin (UBCEP80) ge... 38 1.1
X74405_5(X74405|pid:none) Artemia franciscana gene for polyubiqu... 38 1.1
CQ904363_1(CQ904363|pid:none) Sequence 1 from Patent WO2004085466. 38 1.1
A29584(A29584) ubiquitin precursor - pig (fragment) &M18159_1(M... 38 1.1
BT058528_1(BT058528|pid:none) Salmo salar clone Contig1643 Ubiqu... 38 1.1
FN357410_7(FN357410|pid:none) Schistosoma mansoni genome sequenc... 38 1.1
DQ216243_1(DQ216243|pid:none) Taeniopygia guttata clone 0058P001... 38 1.1
L19056_1(L19056|pid:none) Artemia franciscana ubiquitin mRNA, pa... 38 1.1
EU306853_1(EU306853|pid:none) Drosophila silvestris clone sv3E-T... 38 1.1
UQWO7A(S13136) ubiquitin / ribosomal protein S27a - tobacco horn... 38 1.1
DQ216252_1(DQ216252|pid:none) Taeniopygia guttata clone 0058P000... 38 1.1
EF633956_1(EF633956|pid:none) Ornithodoros parkeri clone OP-73 u... 38 1.1
AK056939_1(AK056939|pid:none) Homo sapiens cDNA FLJ32377 fis, cl... 38 1.1
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub... 38 1.1
FN316687_1(FN316687|pid:none) Schistosoma japonicum isolate Anhu... 38 1.1
AY099121_1(AY099121|pid:none) Lotharella amoeboformis isolate pu... 38 1.1
AF104022_1(AF104022|pid:none) Bovine viral diarrhea virus-2 subg... 38 1.1
DQ216232_1(DQ216232|pid:none) Taeniopygia guttata clone 0058P006... 38 1.1

>AC116977_41(AC116977|pid:none) Dictyostelium discoideum chromosome
2 map 5515173-5817331 strain AX4, complete sequence.
Length = 798

Score = 276 bits (706), Expect(2) = 7e-86
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +2

Query: 56 MLVLIKTPTITFSLDIEISDTLSVLYNKVAERTKNKSYQFQLHFAGDVLSNILSKAIGAC 235
MLVLIKTPTITFSLDIEISDTLSVLYNKVAERTKNKSYQFQLHFAGDVLSNILSKAIGAC
Sbjct: 1 MLVLIKTPTITFSLDIEISDTLSVLYNKVAERTKNKSYQFQLHFAGDVLSNILSKAIGAC 60

Query: 236 GIKKESTIHMILIKEIKLTIKYLDKDYPVEIPNNAGLKVSHLVSHIRTSLQTQIPLLRSY 415
GIKKESTIHMILIKEIKLTIKYLDKDYPVEIPNNAGLKVSHLVSHIRTSLQTQIPLLRSY
Sbjct: 61 GIKKESTIHMILIKEIKLTIKYLDKDYPVEIPNNAGLKVSHLVSHIRTSLQTQIPLLRSY 120

Query: 416 LNSVSLYKTGTDTKYTESMSLQ 481
LNSVSLYKTGTDTKYTESMSLQ
Sbjct: 121 LNSVSLYKTGTDTKYTESMSLQ 142

Score = 66.6 bits (161), Expect(2) = 7e-86
Identities = 41/103 (39%), Positives = 42/103 (40%)
Frame = +3

Query: 480 KENINCYDTIDMKIXXXXXXXXXXXXXXXXXXNKKEPLSXXXXXXXXXXXXXSKTKGYXX 659
+ENINCYDTIDMKI NKKEPLS SKTKGY
Sbjct: 142 QENINCYDTIDMKIGTPLPTTTTTTTTTGSTLNKKEPLSKYKYNNKNNNNNYSKTKGYES 201

Query: 660 XXXXXXXXXXXXYRNRYNXXXXXXXXXXXXXXXXQYEIEKEIE 788
YRNRYN QYEIEKEIE
Sbjct: 202 DTSSDSDSDSESYRNRYNGKSSGSGTGSGSSKPSQYEIEKEIE 244

Score = 304 bits (779), Expect = 5e-81
Identities = 162/197 (82%), Positives = 162/197 (82%)
Frame = +1

Query: 811 RRAEIVESNITDGKXXXXXXXXXXXXXXXXXXXXXXMKLFDFESRIINETNLETIKKNKV 990
RRAEIVESNITDGK MKLFDFESRIINETNLETIKKNKV
Sbjct: 582 RRAEIVESNITDGKSTSSSSPSSSSSSLTITSSMNSMKLFDFESRIINETNLETIKKNKV 641

Query: 991 TNKEKIIYIIGDSGIGKTTFVNNLNYVGKSYNSKLRFKEKSTSLSQSDFDTTDLFIVCFT 1170
TNKEKIIYIIGDSGIGKTTFVNNLNYVGKSYNSKLRFKEKSTSLSQSDFDTTDLFIVCFT
Sbjct: 642 TNKEKIIYIIGDSGIGKTTFVNNLNYVGKSYNSKLRFKEKSTSLSQSDFDTTDLFIVCFT 701

Query: 1171 LQGXXXXXXXXXXXXXEIRKRDPMKPIAIALLQNDLIPDLNNKATYQPSALQQLYSLAGT 1350
LQG EIRKRDPMKPIAIALLQNDLIPDLNNKATYQPSALQQLYSLAGT
Sbjct: 702 LQGSSNSYNNFTNYFTEIRKRDPMKPIAIALLQNDLIPDLNNKATYQPSALQQLYSLAGT 761

Query: 1351 LEFSSKMPQNQIKLIEK 1401
LEFSSKMPQNQIKLIEK
Sbjct: 762 LEFSSKMPQNQIKLIEK 778

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,353,041,426
Number of extensions: 21932657
Number of successful extensions: 100678
Number of sequences better than 10.0: 658
Number of HSP's gapped: 99270
Number of HSP's successfully gapped: 1488
Length of query: 499
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 366
Effective length of database: 620,718,517
Effective search space: 227182977222
Effective search space used: 227182977222
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.40 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for Contig-U12522-1 is cyt

VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0