NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12512-1
Contig ID Contig-U12512-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12512-1 (Contig-U12512-1Q) /CSM_Contig/Contig-U12512-1Q.Seq.d
AAGTCAATATGAAAACTCGGCAAAGAATTGGATAAGTTGGGCACATTTCT
GCGATAATCAATTCACCAATCATAGTAGTAGTTCAATAACTCCTTCTTCA
ACTCCTACCACTTATGATATTAAAACTCAATGGGCTGAATCTGCAATTAG
TTGTTATATTCAAGGCATTAAATGTGATCCAAAATATGGTAGTCGTTATG
TTCCAAGAATATTCTGGTTACTTTATCTAAATGGTTCTGGTGAAGTTCCT
CAACAAATACAAACTCAACAACAACAACAACAAGCAGCTGCTCAAGGTGG
CTTACCACCACAACCAAGAAAACTAACACCTGCCCAATCTGTATTCCAAT
CATTCTTAAATTCATGGACTATTCTTCCACAATGGATTTGGTTAAATTAT
ATGCCTCAATTGATTTCAGGTGCTGCTAATCTTTTAAATTTCCCAGGTTA
TGGTTTCCTTTGTTGGCAAATGATTGGTAAAATTTGTTATTTATTCCCAA
ATTCTTCATATTATCATTTTAGAAAATTAGTTTTGGAAATGAAATCAAAT
GCTTCTAAATTTACTACCTCACCACCTACAACAACAACAACAGCAACAAC
AACAACAACAGCAACAACAACAATAACAACAGCTACTACAACCTCAACAC
CAACTCAAAATACAACACCAACTCAAAATACAACTACACCTATTAAAGAA
GAATCATCTACAACTACTGCAACTACAACACCAGCTGTACCATCAACTTC
TACTCCAACTTCTACATCAGCACCAGCTCCAATATCAACATCTACAAATA
CCCCACCAAATGCTACAACAACAACTCCACAAGCAAATACAACATCACCA
CCACCACCAAGTTCAACATTCTCACCACTTAAAATGACAGAAACATTATC
ACTTGGATTGCATCAATATCATTCTTGTTTAATTAATGAAATTGATATGA
TGTTAGGATCATTTAGTATATTATCAGGTAGTATACCAGCAGTTTATCAA
TTTAATGGCTCATTAAATCAAATTTTATTAGAAGCATTCAAATTGAATAA
GATTGAAGATTCAATATATAATTCCATTCGTTCATTATATAAACATTATT
TCGTAAATGAAATTAAATATCAAAATAGTAAAGAATTTTTAGAAGCCTAT
AAGAGTGAATTTAAAGTTGATTTCATTGAATTCA----------NNNNNN
NNNNTATAGATTCTAGTAAATTAGTAGTGTTTAGAGAAATGTCAAAAGAG
ATTGGTGATGAATTAATGATCAATTATATTCAATCAACATTATTACCAAC
CAATTATCAAGATCAATATGAATTTAAATTAAACTTTTCAAATCAATTTG
GTTTACATTCATTATTGCAATACATTCTATTCTCAGATATTGGTGATATT
GATCCATCAAAGATTTATTTAACAAAATCTACAGGTTCAGTGTATTATAA
TGATTGGTCATTAAAATTAACAAATCGTAAATTAGGTTTTGATTTACTTC
AAGATAATCCATACAATCAACAACAACTATTAAGACTATCACCAAATATT
AGAAATTATTTAGGTCCTTTATATTTAGAAGGTAGTTATCTTTCTTCAAT
GATTTCAACTTGTATTTGTTTATCAGATTTAAAGGATCAATTGGTTAATT
CAATCAATTTATTCATTTTCGATGAATATATGTGTATGAATAATGTTGAA
CCATTACAACAGAGTGAACAAAATAAAGATAGAAACATTCACTATGAATT
CATTGATAAAACTACCGCCACTGTTCATCAAATGCTTGAAAATAGAATTG
ATTCTTTAACTCCTTCCTCTCAACCTGATAAAACCTGTTTTATCTCTCCA
ATAGTTAAAAAAGTAAATCAATTAATTCAAAATTCTTTATCTTCAAATAT
TTCTCAATTGGACCAATTATCTTGTCCAGGCTTTAAAAAAGTAATAAAAT
TAAATAAATAAAAATAAATAAA
Gap gap included
Contig length 1962
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5140727
End point 5142681
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U12512
List of clone(s) 

est1=CHP454Z,1,694
est2=VHK232F,291,955
est3=CHJ517F,601,1184
est4=VHK232Z,1185,1953
Translated Amino Acid sequence 
SQYENSAKNWISWAHFCDNQFTNHSSSSITPSSTPTTYDIKTQWAESAISCYIQGIKCDP
KYGSRYVPRIFWLLYLNGSGEVPQQIQTQQQQQQAAAQGGLPPQPRKLTPAQSVFQSFLN
SWTILPQWIWLNYMPQLISGAANLLNFPGYGFLCWQMIGKICYLFPNSSYYHFRKLVLEM
KSNASKFTTSPPTTTTTATTTTTATTTITTATTTSTPTQNTTPTQNTTTPIKEESSTTTA
TTTPAVPSTSTPTSTSAPAPISTSTNTPPNATTTTPQANTTSPPPPSSTFSPLKMTETLS
LGLHQYHSCLINEIDMMLGSFSILSGSIPAVYQFNGSLNQILLEAFKLNKIEDSIYNSIR
SLYKHYFVNEIKYQNSKEFLEAYKSEFKVDFIEF---

---XXXIDSSKLVVFREMSKEIGDELMINYIQSTLLPTNYQDQYEFKLNFSNQFGLHSLL
QYILFSDIGDIDPSKIYLTKSTGSVYYNDWSLKLTNRKLGFDLLQDNPYNQQQLLRLSPN
IRNYLGPLYLEGSYLSSMISTCICLSDLKDQLVNSINLFIFDEYMCMNNVEPLQQSEQNK
DRNIHYEFIDKTTATVHQMLENRIDSLTPSSQPDKTCFISPIVKKVNQLIQNSLSSNISQ
LDQLSCPGFKKVIKLNK*k*i
Translated Amino Acid sequence (All Frames) 
Frame A:
ksi*klgkeldklgtflr*sihqs***fnnsffnsyhl*y*nsmg*icn*llysrh*m*s
kiw*slcsknilvtlskwfw*ssstntnstttttsscsrwlttttkktntcpicipiilk
fmdysstmdlvklyasidfrcc*sfkfprlwfpllandw*nllfipkffilsf*kisfgn
eikcf*iyylttynnnnsnnnnnsnnnnnnsyynlntnskyntnskynyty*rriiynyc
nyntsctinfysnfyistssniniykyptkcynnnstskynittttkfniltt*ndrnii
twiasisflfn**n*ydvrii*yiir*ytsslsi*wliksnfirsiqie*d*rfni*fhs
fii*tlfrk*n*isk**rifrsl*e*i*s*fh*i---

---xxxx*ilvn**clekcqkrlvmn**siifnqhyyqpiikinmnln*tfqinlvyihy
cntfysqilvilihqrfi*qnlqvqciimigh*n*qivn*vliyfkiihtinnny*dyhq
ileii*vlyi*kvviflq*fqlvfvyqi*rinwliqsiysfsmnicv*imlnhynrvnki
kietftmnsliklpplfikclkielil*llplnlikpvlslq*lkk*in*fkilylqifl
nwtnylvqalkk**n*inknk*

Frame B:
SQYENSAKNWISWAHFCDNQFTNHSSSSITPSSTPTTYDIKTQWAESAISCYIQGIKCDP
KYGSRYVPRIFWLLYLNGSGEVPQQIQTQQQQQQAAAQGGLPPQPRKLTPAQSVFQSFLN
SWTILPQWIWLNYMPQLISGAANLLNFPGYGFLCWQMIGKICYLFPNSSYYHFRKLVLEM
KSNASKFTTSPPTTTTTATTTTTATTTITTATTTSTPTQNTTPTQNTTTPIKEESSTTTA
TTTPAVPSTSTPTSTSAPAPISTSTNTPPNATTTTPQANTTSPPPPSSTFSPLKMTETLS
LGLHQYHSCLINEIDMMLGSFSILSGSIPAVYQFNGSLNQILLEAFKLNKIEDSIYNSIR
SLYKHYFVNEIKYQNSKEFLEAYKSEFKVDFIEF---

---xxxyrf**issv*rnvkrdw**indqlysiniitnqlsrsi*i*iklfksiwftfii
aihsilryw*y*sikdlfnkiyrfsvl**lvikinks*irf*ftsr*siqstttiktitk
y*klfrsfifrr*lsffndfnlylfirfkgsig*fnqfihfr*iyvye*c*titte*tk*
r*khsl*ih**nyrhcssna*k*n*ffnsflst**nlfylsns*ksksinskffifkyfs
igpiilsrl*ksnkik*ikink

Frame C:
vnmktrqrig*vghisaiinspiivvvq*lllqllplmilklnglnlqlvvifkalnviq
nmvvvmfqeysgyfi*mvlvkflnkyklnnnnnkqllkvayhhnqen*hlpnlysnhs*i
hglffhngfg*iicln*fqvllif*isqvmvsfvgk*lvkfviysqilhiiilen*fwk*
nqmllnllphhlqqqqqqqqqqqqqqq*qqllqpqhqlkiqhqlkiqlhllkknhlqllq
lqhqlyhqlllqllhqhqlqyqhlqiphqmlqqqlhkqiqhhhhhqvqhshhlk*qkhyh
ldciniilv*lmkli*c*dhlvyyqvvyqqfinlmah*ikfy*khsn*irlkiqyiipfv
hyiniis*mklnikivknf*kpirvnlklislns---

---XXXIDSSKLVVFREMSKEIGDELMINYIQSTLLPTNYQDQYEFKLNFSNQFGLHSLL
QYILFSDIGDIDPSKIYLTKSTGSVYYNDWSLKLTNRKLGFDLLQDNPYNQQQLLRLSPN
IRNYLGPLYLEGSYLSSMISTCICLSDLKDQLVNSINLFIFDEYMCMNNVEPLQQSEQNK
DRNIHYEFIDKTTATVHQMLENRIDSLTPSSQPDKTCFISPIVKKVNQLIQNSLSSNISQ
LDQLSCPGFKKVIKLNK*k*i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12512-1 (Contig-U12512-1Q)
/CSM_Contig/Contig-U12512-1Q.Seq.d
         (1972 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12512-1 (Contig-U12512-1Q) /CSM_Contig/Conti...  1445  0.0
Contig-U09610-1 (Contig-U09610-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U12548-1 (Contig-U12548-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U12504-1 (Contig-U12504-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U11443-1 (Contig-U11443-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U08011-1 (Contig-U08011-1Q) /CSM_Contig/Conti...    38  0.035

>Contig-U12512-1 (Contig-U12512-1Q) /CSM_Contig/Contig-U12512-1Q.Seq.d
          Length = 1972

 Score = 1445 bits (729), Expect = 0.0
 Identities = 729/729 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1205 tatagattctagtaaattagtagtgtttagagaaatgtcaaaagagattggtgatgaatt 1264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 tatagattctagtaaattagtagtgtttagagaaatgtcaaaagagattggtgatgaatt 1264

                                                                        
Query: 1265 aatgatcaattatattcaatcaacattattaccaaccaattatcaagatcaatatgaatt 1324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 aatgatcaattatattcaatcaacattattaccaaccaattatcaagatcaatatgaatt 1324

                                                                        
Query: 1325 taaattaaacttttcaaatcaatttggtttacattcattattgcaatacattctattctc 1384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 taaattaaacttttcaaatcaatttggtttacattcattattgcaatacattctattctc 1384

                                                                        
Query: 1385 agatattggtgatattgatccatcaaagatttatttaacaaaatctacaggttcagtgta 1444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 agatattggtgatattgatccatcaaagatttatttaacaaaatctacaggttcagtgta 1444

                                                                        
Query: 1445 ttataatgattggtcattaaaattaacaaatcgtaaattaggttttgatttacttcaaga 1504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 ttataatgattggtcattaaaattaacaaatcgtaaattaggttttgatttacttcaaga 1504

                                                                        
Query: 1505 taatccatacaatcaacaacaactattaagactatcaccaaatattagaaattatttagg 1564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 taatccatacaatcaacaacaactattaagactatcaccaaatattagaaattatttagg 1564

                                                                        
Query: 1565 tcctttatatttagaaggtagttatctttcttcaatgatttcaacttgtatttgtttatc 1624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 tcctttatatttagaaggtagttatctttcttcaatgatttcaacttgtatttgtttatc 1624

                                                                        
Query: 1625 agatttaaaggatcaattggttaattcaatcaatttattcattttcgatgaatatatgtg 1684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 agatttaaaggatcaattggttaattcaatcaatttattcattttcgatgaatatatgtg 1684

                                                                        
Query: 1685 tatgaataatgttgaaccattacaacagagtgaacaaaataaagatagaaacattcacta 1744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1685 tatgaataatgttgaaccattacaacagagtgaacaaaataaagatagaaacattcacta 1744

                                                                        
Query: 1745 tgaattcattgataaaactaccgccactgttcatcaaatgcttgaaaatagaattgattc 1804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745 tgaattcattgataaaactaccgccactgttcatcaaatgcttgaaaatagaattgattc 1804

                                                                        
Query: 1805 tttaactccttcctctcaacctgataaaacctgttttatctctccaatagttaaaaaagt 1864
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1805 tttaactccttcctctcaacctgataaaacctgttttatctctccaatagttaaaaaagt 1864

                                                                        
Query: 1865 aaatcaattaattcaaaattctttatcttcaaatatttctcaattggaccaattatcttg 1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1865 aaatcaattaattcaaaattctttatcttcaaatatttctcaattggaccaattatcttg 1924

                     
Query: 1925 tccaggctt 1933
            |||||||||
Sbjct: 1925 tccaggctt 1933


 Score = 1027 bits (518), Expect = 0.0
 Identities = 518/518 (100%)
 Strand = Plus / Plus

                                                                        
Query: 667  accaactcaaaatacaactacacctattaaagaagaatcatctacaactactgcaactac 726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667  accaactcaaaatacaactacacctattaaagaagaatcatctacaactactgcaactac 726

                                                                        
Query: 727  aacaccagctgtaccatcaacttctactccaacttctacatcagcaccagctccaatatc 786
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  aacaccagctgtaccatcaacttctactccaacttctacatcagcaccagctccaatatc 786

                                                                        
Query: 787  aacatctacaaataccccaccaaatgctacaacaacaactccacaagcaaatacaacatc 846
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  aacatctacaaataccccaccaaatgctacaacaacaactccacaagcaaatacaacatc 846

                                                                        
Query: 847  accaccaccaccaagttcaacattctcaccacttaaaatgacagaaacattatcacttgg 906
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847  accaccaccaccaagttcaacattctcaccacttaaaatgacagaaacattatcacttgg 906

                                                                        
Query: 907  attgcatcaatatcattcttgtttaattaatgaaattgatatgatgttaggatcatttag 966
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  attgcatcaatatcattcttgtttaattaatgaaattgatatgatgttaggatcatttag 966

                                                                        
Query: 967  tatattatcaggtagtataccagcagtttatcaatttaatggctcattaaatcaaatttt 1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  tatattatcaggtagtataccagcagtttatcaatttaatggctcattaaatcaaatttt 1026

                                                                        
Query: 1027 attagaagcattcaaattgaataagattgaagattcaatatataattccattcgttcatt 1086
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 attagaagcattcaaattgaataagattgaagattcaatatataattccattcgttcatt 1086

                                                                        
Query: 1087 atataaacattatttcgtaaatgaaattaaatatcaaaatagtaaagaatttttagaagc 1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 atataaacattatttcgtaaatgaaattaaatatcaaaatagtaaagaatttttagaagc 1146

                                                  
Query: 1147 ctataagagtgaatttaaagttgatttcattgaattca 1184
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 ctataagagtgaatttaaagttgatttcattgaattca 1184


 Score =  583 bits (294), Expect = e-166
 Identities = 294/294 (100%)
 Strand = Plus / Plus

                                                                       
Query: 284 gcagctgctcaaggtggcttaccaccacaaccaagaaaactaacacctgcccaatctgta 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gcagctgctcaaggtggcttaccaccacaaccaagaaaactaacacctgcccaatctgta 343

                                                                       
Query: 344 ttccaatcattcttaaattcatggactattcttccacaatggatttggttaaattatatg 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttccaatcattcttaaattcatggactattcttccacaatggatttggttaaattatatg 403

                                                                       
Query: 404 cctcaattgatttcaggtgctgctaatcttttaaatttcccaggttatggtttcctttgt 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cctcaattgatttcaggtgctgctaatcttttaaatttcccaggttatggtttcctttgt 463

                                                                       
Query: 464 tggcaaatgattggtaaaatttgttatttattcccaaattcttcatattatcattttaga 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tggcaaatgattggtaaaatttgttatttattcccaaattcttcatattatcattttaga 523

                                                                 
Query: 524 aaattagttttggaaatgaaatcaaatgcttctaaatttactacctcaccacct 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaattagttttggaaatgaaatcaaatgcttctaaatttactacctcaccacct 577


 Score =  496 bits (250), Expect = e-140
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtcaatatgaaaactcggcaaagaattggataagttgggcacatttctgcgataatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aagtcaatatgaaaactcggcaaagaattggataagttgggcacatttctgcgataatca 60

                                                                       
Query: 61  attcaccaatcatagtagtagttcaataactccttcttcaactcctaccacttatgatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attcaccaatcatagtagtagttcaataactccttcttcaactcctaccacttatgatat 120

                                                                       
Query: 121 taaaactcaatgggctgaatctgcaattagttgttatattcaaggcattaaatgtgatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaaactcaatgggctgaatctgcaattagttgttatattcaaggcattaaatgtgatcc 180

                                                                       
Query: 181 aaaatatggtagtcgttatgttccaagaatattctggttactttatctaaatggttctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaatatggtagtcgttatgttccaagaatattctggttactttatctaaatggttctgg 240

                     
Query: 241 tgaagttcct 250
           ||||||||||
Sbjct: 241 tgaagttcct 250


 Score = 36.2 bits (18), Expect = 0.14
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 667 accaactcaaaatacaac 684
           ||||||||||||||||||
Sbjct: 649 accaactcaaaatacaac 666


>Contig-U09610-1 (Contig-U09610-1Q) /CSM_Contig/Contig-U09610-1Q.Seq.d
          Length = 1160

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 839 acaacatcaccaccaccaccaa 860
           ||||||||||||||||||||||
Sbjct: 113 acaacatcaccaccaccaccaa 134


 Score = 36.2 bits (18), Expect = 0.14
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 839 acaacatcaccaccaccaccaa 860
           |||||| |||||||||||||||
Sbjct: 224 acaacaacaccaccaccaccaa 245


 Score = 32.2 bits (16), Expect = 2.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 834 caaatacaacatcaccacca 853
           |||| |||||||||||||||
Sbjct: 84  caaaaacaacatcaccacca 103


 Score = 32.2 bits (16), Expect = 2.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 834 caaatacaacatcaccacca 853
           |||| |||||||||||||||
Sbjct: 255 caaaaacaacatcaccacca 274


>Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Contig-U12557-1Q.Seq.d
          Length = 1393

 Score = 40.1 bits (20), Expect = 0.009
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 841 aacatcaccaccaccaccaa 860
           ||||||||||||||||||||
Sbjct: 338 aacatcaccaccaccaccaa 357


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,261
Number of Sequences: 6905
Number of extensions: 37261
Number of successful extensions: 4333
Number of sequences better than 10.0: 483
length of query: 1972
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1956
effective length of database: 5,564,391
effective search space: 10883948796
effective search space used: 10883948796
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 1
Homology vs DNA 
Query= Contig-U12512-1 (Contig-U12512-1Q) /CSM_Contig/Contig-U12512-1Q.Seq.d
         (1972 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442953) Dictyostelium discoideum cDNA clone:ddv51o08, 3' ...  1445   0.0    1
(BJ383332) Dictyostelium discoideum cDNA clone:ddc52l14, 3' ...   583   0.0    2
(BJ424121) Dictyostelium discoideum cDNA clone:ddv51o08, 5' ...   569   0.0    2
(BJ366996) Dictyostelium discoideum cDNA clone:ddc41a05, 5' ...   983   0.0    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    42   0.016  20
(CU051380) Equus caballus GSS, BAC clone CH241-152D1, SP6 en...    38   0.066  2
(BH546938) BOHEB45TR BOHE Brassica oleracea genomic clone BO...    36   0.17   3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.19   22
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   0.20   13
(AC146826) Otolemur garnettii clone CH256-71O20, WORKING DRA...    44   0.27   11
(AY120687) Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, co...    50   0.32   1
(AF375431) Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, co...    50   0.32   1
(AC010927) Arabidopsis thaliana chromosome III BAC T22K18 ge...    50   0.32   1
(EJ344575) 1092963538595 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.32   1
(CW793543) WiscDsLox259A06 Arabidopsis thaliana T-DNA insert...    50   0.32   1
(AV822109) Arabidopsis thaliana cDNA clone:RAFL05-01-C23, 5'...    50   0.32   1
(BX839719) Arabidopsis thaliana Full-length cDNA 5PRIM end o...    50   0.32   1
(BX839608) Arabidopsis thaliana Full-length cDNA 5PRIM end o...    50   0.32   1
(BP868761) Arabidopsis thaliana cDNA clone:RAFL21-85-H11, 5'...    50   0.32   1
(BP807901) Arabidopsis thaliana cDNA clone:RAFL24-15-K19, 5'...    50   0.32   1
(DE492369) Bombyx mori genomic DNA, Fosmid clone:GBMFno100_h...    46   0.40   2
(AL935196) Zebrafish DNA sequence from clone DKEYP-79F4 in l...    46   0.42   5
(AC141731) Apis mellifera clone CH224-58F22, WORKING DRAFT S...    40   0.70   6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.88   17
(AC112646) Homo sapiens 3 BAC RP11-687B8 (Roswell Park Cance...    38   0.91   3
(CR392343) Zebrafish DNA sequence from clone CH211-195G6 in ...    48   1.3    1
(CU463302) Mouse DNA sequence from clone RP24-345I17 on chro...    48   1.3    1
(CT030728) Mouse DNA sequence from clone RP23-108F2 on chrom...    48   1.3    1
(AC129554) Mus musculus chromosome 17, clone RP24-358N7, com...    48   1.3    1
(AC024032) Homo sapiens BAC clone RP11-196J14 from 4, comple...    48   1.3    1
(AC068096) Homo sapiens clone RP11-488H6, WORKING DRAFT SEQU...    48   1.3    1
(AC230311) Bos taurus clone CH240-513M23, WORKING DRAFT SEQU...    48   1.3    1
(AC223965) Bos taurus clone CH240-453K1, WORKING DRAFT SEQUE...    48   1.3    1
(EK267720) 1095462240307 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.3    1
(EJ337299) 1092963488314 Global-Ocean-Sampling_GS-28-01-01-1...    48   1.3    1
(CN761689) ID0AAA3AB04RM1 ApMS Acyrthosiphon pisum cDNA clon...    48   1.3    1
(CN753841) ID0AAA11BC06RM1 ApMS Acyrthosiphon pisum cDNA clo...    48   1.3    1
(AI922067) wn51h04.x1 NCI_CGAP_Lu19 Homo sapiens cDNA clone ...    48   1.3    1
(AI374874) ta60f03.x1 Soares_total_fetus_Nb2HF8_9w Homo sapi...    48   1.3    1
(FF307418) 279369135 Pea aphid whole body normalized full le...    48   1.3    1
(FF294305) 279299131 Pea aphid whole body normalized full le...    48   1.3    1
(EX639122) 256625192 Pea aphid whole body normalized full le...    48   1.3    1
(AC175408) Bos taurus clone CH240-507F9, WORKING DRAFT SEQUE...    38   1.3    7
(CG783650) 01S0583-02C1-C02 UniformMu MuTAIL Library Zea may...    38   1.5    2
(CG783659) 01S0583-02C1-C12 UniformMu MuTAIL Library Zea may...    38   1.6    2
(EI394602) ZMMBBc0567H01.fq ZMMBB_VAL Zea mays genomic clone...    38   1.6    2
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    38   1.7    18
(AR550016) Sequence 5147 from patent US 6747137.                   46   1.7    2
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   1.7    11
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   1.7    21
(BH417722) MuSite01-054 MuTAIL-PCR product Zea mays genomic ...    38   1.8    2
(DX872377) ZMMBLf0003H23.f ZMMBLf Zea mays genomic clone ZMM...    38   1.9    2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   2.0    18
(EI414654) ZMMBBc0567H01.fv ZMMBB_VAL Zea mays genomic clone...    38   2.1    2
(CG104180) PUKEF82TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    38   2.4    2
(CG104183) PUKEF82TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    38   2.4    2
(AC016239) Homo sapiens clone RP11-27N13, WORKING DRAFT SEQU...    36   2.6    2
(AC104780) Homo sapiens BAC clone RP11-27N13 from 2, complet...    36   2.7    2
(AM285318) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   2.7    7
(FK416562) 454GmaGlobSeed151194 Soybean Seeds Containing Glo...    44   2.7    2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   2.9    14
(AC158033) Bos taurus clone CH240-138J15, *** SEQUENCING IN ...    40   3.0    5
(DE462260) Bombyx mori genomic DNA, Fosmid clone:GBMFno59_c2...    42   3.4    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   3.4    16
(CR388126) Zebrafish DNA sequence from clone CH211-198M17 in...    40   3.5    6
(CU469100) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   4.0    12
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   4.1    14
(AM285311) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   4.3    6
(AE017308) Mycoplasma mobile 163K complete genome.                 34   4.4    21
(BX927292) Zebrafish DNA sequence from clone CH211-197O22 in...    46   5.1    1
(CR382134) Debaryomyces hansenii chromosome B of strain CBS7...    46   5.1    1
(AP009296) Solanum lycopersicum genomic DNA, chromosome 8, c...    46   5.1    1
(AM480546) Vitis vinifera contig VV78X247843.5, whole genome...    46   5.1    1
(AM432067) Vitis vinifera contig VV78X202703.2, whole genome...    46   5.1    1
(AM425166) Vitis vinifera contig VV78X047503.4, whole genome...    46   5.1    1
(AF303771) Carya illinoinensis atpB-rbcL intergenic spacer, ...    46   5.1    1
(AF303770) Carya tomentosa atpB-rbcL intergenic spacer, chlo...    46   5.1    1
(AF303769) Carya glabra atpB-rbcL intergenic spacer, chlorop...    46   5.1    1
(AF303768) Carya ovata atpB-rbcL intergenic spacer, chloropl...    46   5.1    1
(AF303767) Carya myristiciformis atpB-rbcL intergenic spacer...    46   5.1    1
(AF303766) Carya cordiformis atpB-rbcL intergenic spacer, ch...    46   5.1    1
(AP003356) Homo sapiens genomic DNA, chromosome 8q23, clone:...    46   5.1    1
(AC106156) Rattus norvegicus clone CH230-20A9, WORKING DRAFT...    46   5.1    1
(AC097077) Rattus norvegicus clone CH230-39G24, WORKING DRAF...    46   5.1    1
(CT005271) Leishmania major chromosome 34 strain Friedlin, c...    46   5.1    1
(AC011771) Homo sapiens chromosome 8 clone RP11-150P21 map 8...    46   5.1    1
(BH367691) AG-ND-101M11.TF ND-TAM Anopheles gambiae genomic ...    46   5.1    1
(ED755290) GM_WBb0123I12.r GM_WBb Glycine max genomic clone ...    46   5.1    1
(CT454437) Sus scrofa genomic clone CH242-452J22, genomic su...    46   5.1    1
(CR892700) Sus scrofa BES.                                         46   5.1    1
(BM440110) pgr1n.pk002.d1 Normalized Chicken Reproductive Tr...    46   5.1    1
(FK859358) 000004981173B09 D. serrata mRNA from different de...    46   5.1    1
(EY188489) LLAE0117C Spider Loxosceles laeta cDNA library Lo...    46   5.1    1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    36   5.2    13
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    36   5.5    25
(DQ517337) Trichoplusia ni ascovirus 2c, complete genome.          32   5.6    11
(AC136679) Medicago truncatula clone mth2-22c4, complete seq...    42   5.9    7
(BJ412922) Dictyostelium discoideum cDNA clone:ddv13m07, 5' ...    44   5.9    2
(AM640108) Entamoeba dispar GSS, clone dispar71h08.p1k.            32   6.0    4
(AL844506) Plasmodium falciparum chromosome  7.                    34   6.3    22

>(BJ442953) Dictyostelium discoideum cDNA clone:ddv51o08, 3' end,
            single read.
          Length = 769

 Score = 1445 bits (729), Expect = 0.0
 Identities = 729/729 (100%)
 Strand = Plus / Minus


Query: 1205 tatagattctagtaaattagtagtgtttagagaaatgtcaaaagagattggtgatgaatt 1264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  tatagattctagtaaattagtagtgtttagagaaatgtcaaaagagattggtgatgaatt 710


Query: 1265 aatgatcaattatattcaatcaacattattaccaaccaattatcaagatcaatatgaatt 1324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  aatgatcaattatattcaatcaacattattaccaaccaattatcaagatcaatatgaatt 650


Query: 1325 taaattaaacttttcaaatcaatttggtttacattcattattgcaatacattctattctc 1384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  taaattaaacttttcaaatcaatttggtttacattcattattgcaatacattctattctc 590


Query: 1385 agatattggtgatattgatccatcaaagatttatttaacaaaatctacaggttcagtgta 1444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  agatattggtgatattgatccatcaaagatttatttaacaaaatctacaggttcagtgta 530


Query: 1445 ttataatgattggtcattaaaattaacaaatcgtaaattaggttttgatttacttcaaga 1504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  ttataatgattggtcattaaaattaacaaatcgtaaattaggttttgatttacttcaaga 470


Query: 1505 taatccatacaatcaacaacaactattaagactatcaccaaatattagaaattatttagg 1564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  taatccatacaatcaacaacaactattaagactatcaccaaatattagaaattatttagg 410


Query: 1565 tcctttatatttagaaggtagttatctttcttcaatgatttcaacttgtatttgtttatc 1624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409  tcctttatatttagaaggtagttatctttcttcaatgatttcaacttgtatttgtttatc 350


Query: 1625 agatttaaaggatcaattggttaattcaatcaatttattcattttcgatgaatatatgtg 1684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349  agatttaaaggatcaattggttaattcaatcaatttattcattttcgatgaatatatgtg 290


Query: 1685 tatgaataatgttgaaccattacaacagagtgaacaaaataaagatagaaacattcacta 1744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289  tatgaataatgttgaaccattacaacagagtgaacaaaataaagatagaaacattcacta 230


Query: 1745 tgaattcattgataaaactaccgccactgttcatcaaatgcttgaaaatagaattgattc 1804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229  tgaattcattgataaaactaccgccactgttcatcaaatgcttgaaaatagaattgattc 170


Query: 1805 tttaactccttcctctcaacctgataaaacctgttttatctctccaatagttaaaaaagt 1864
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169  tttaactccttcctctcaacctgataaaacctgttttatctctccaatagttaaaaaagt 110


Query: 1865 aaatcaattaattcaaaattctttatcttcaaatatttctcaattggaccaattatcttg 1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109  aaatcaattaattcaaaattctttatcttcaaatatttctcaattggaccaattatcttg 50


Query: 1925 tccaggctt 1933
            |||||||||
Sbjct: 49   tccaggctt 41

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,300,720,380
Number of extensions: 145906167
Number of successful extensions: 13390465
Number of sequences better than 10.0: 128
Length of query: 1972
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1948
Effective length of database: 97,308,875,965
Effective search space: 189557690379820
Effective search space used: 189557690379820
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12512-1 (Contig-U12512-1Q) /CSM_Contig/Contig-U12512-1Q.Seq.d
         (1972 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54T85) RecName: Full=Probable transcription-associated protein...   486   e-135
AP007162_314(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...    67   2e-09
AL451020_8(AL451020|pid:none) Neurospora crassa DNA linkage grou...    59   7e-07
BX538350_115(BX538350|pid:none) Cryptosporidium parvum chromosom...    54   2e-05
(Q9HFE8) RecName: Full=Transcription-associated protein 1;  &AL4...    51   2e-04
CU928173_271(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    49   9e-04
BT065362_1(BT065362|pid:none) Zea mays full-length cDNA clone ZM...    49   9e-04
(P38811) RecName: Full=Transcription-associated protein 1; AltNa...    48   0.001
CP000588_114(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...    47   0.002
CR382138_687(CR382138|pid:none) Debaryomyces hansenii strain CBS...    47   0.003
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    46   0.006
AE016818_732(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    45   0.007
AE017341_601(AE017341|pid:none) Cryptococcus neoformans var. neo...    43   0.048
AL022373_21(AL022373|pid:none) Arabidopsis thaliana DNA chromoso...    42   0.063
AL161588_35(AL161588|pid:none) Arabidopsis thaliana DNA chromoso...    42   0.063
CR382126_945(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    40   0.31
AY256967_1(AY256967|pid:none) Xenopus laevis nuclear transcripto...    40   0.41
CR380957_16(CR380957|pid:none) Candida glabrata strain CBS138 ch...    39   0.53
AY095369_1(AY095369|pid:none) Giardia lamblia ATCC 50803 phospha...    39   0.53
AY438003_1(AY438003|pid:none) Aedes aegypti target of rapamycin ...    38   1.2
AM884176_382(AM884176|pid:none) Chlamydia trachomatis strain L2/...    38   1.6
BC029023_1(BC029023|pid:none) Mus musculus transformation/transc...    37   2.0
AB209489_1(AB209489|pid:none) Homo sapiens mRNA for Transformati...    37   2.0
AF110377_1(AF110377|pid:none) Homo sapiens PCAF-associated facto...    37   2.0
(Q9Y4A5) RecName: Full=Transformation/transcription domain-assoc...    37   2.0
AK147613_1(AK147613|pid:none) Mus musculus cDNA, RIKEN full-leng...    37   2.0
AF076974_1(AF076974|pid:none) Homo sapiens TRRAP protein (TRRAP)...    37   2.0
AK029388_1(AK029388|pid:none) Mus musculus 0 day neonate head cD...    37   2.0
AC004893_1(AC004893|pid:none) Homo sapiens PAC clone RP4-808A1 f...    37   2.0
CR382129_76(CR382129|pid:none) Yarrowia lipolytica strain CLIB12...    37   2.0
EU926975_1(EU926975|pid:none) Blattella germanica target of rapa...    36   5.9
BC166349_1(BC166349|pid:none) Xenopus tropicalis hypothetical pr...    35   7.7
AL590442_111(AL590442|pid:none) chromosome II of strain GB-M1 of...    35   7.7

>(Q54T85) RecName: Full=Probable transcription-associated protein 1;
          Length = 4582

 Score =  486 bits (1250), Expect = e-135
 Identities = 241/241 (100%), Positives = 241/241 (100%)
 Frame = +3

Query: 1206 IDSSKLVVFREMSKEIGDELMINYIQSTLLPTNYQDQYEFKLNFSNQFGLHSLLQYILFS 1385
            IDSSKLVVFREMSKEIGDELMINYIQSTLLPTNYQDQYEFKLNFSNQFGLHSLLQYILFS
Sbjct: 4340 IDSSKLVVFREMSKEIGDELMINYIQSTLLPTNYQDQYEFKLNFSNQFGLHSLLQYILFS 4399

Query: 1386 DIGDIDPSKIYLTKSTGSVYYNDWSLKLTNRKLGFDLLQDNPYNQQQLLRLSPNIRNYLG 1565
            DIGDIDPSKIYLTKSTGSVYYNDWSLKLTNRKLGFDLLQDNPYNQQQLLRLSPNIRNYLG
Sbjct: 4400 DIGDIDPSKIYLTKSTGSVYYNDWSLKLTNRKLGFDLLQDNPYNQQQLLRLSPNIRNYLG 4459

Query: 1566 PLYLEGSYLSSMISTCICLSDLKDQLVNSINLFIFDEYMCMNNVEPLQQSEQNKDRNIHY 1745
            PLYLEGSYLSSMISTCICLSDLKDQLVNSINLFIFDEYMCMNNVEPLQQSEQNKDRNIHY
Sbjct: 4460 PLYLEGSYLSSMISTCICLSDLKDQLVNSINLFIFDEYMCMNNVEPLQQSEQNKDRNIHY 4519

Query: 1746 EFIDKTTATVHQMLENRIDSLTPSSQPDKTCFISPIVKKVNQLIQNSLSSNISQLDQLSC 1925
            EFIDKTTATVHQMLENRIDSLTPSSQPDKTCFISPIVKKVNQLIQNSLSSNISQLDQLSC
Sbjct: 4520 EFIDKTTATVHQMLENRIDSLTPSSQPDKTCFISPIVKKVNQLIQNSLSSNISQLDQLSC 4579

Query: 1926 P 1928
            P
Sbjct: 4580 P 4580

 Score =  339 bits (869), Expect = 3e-91
 Identities = 159/187 (85%), Positives = 159/187 (85%)
 Frame = +2

Query: 2    SQYENSAKNWISWAHFCDNQFTNHXXXXXXXXXXXXXYDIKTQWAESAISCYIQGIKCDP 181
            SQYENSAKNWISWAHFCDNQFTNH             YDIKTQWAESAISCYIQGIKCDP
Sbjct: 3637 SQYENSAKNWISWAHFCDNQFTNHSSSSITPSSTPTTYDIKTQWAESAISCYIQGIKCDP 3696

Query: 182  KYGSRYVPRIFWLLYLNGSGEVPXXXXXXXXXXXXXXXGGLPPQPRKLTPAQSVFQSFLN 361
            KYGSRYVPRIFWLLYLNGSGEVP               GGLPPQPRKLTPAQSVFQSFLN
Sbjct: 3697 KYGSRYVPRIFWLLYLNGSGEVPQQIQTQQQQQQAAAQGGLPPQPRKLTPAQSVFQSFLN 3756

Query: 362  SWTILPQWIWLNYMPQLISGAANLLNFPGYGFLCWQMIGKICYLFPNSSYYHFRKLVLEM 541
            SWTILPQWIWLNYMPQLISGAANLLNFPGYGFLCWQMIGKICYLFPNSSYYHFRKLVLEM
Sbjct: 3757 SWTILPQWIWLNYMPQLISGAANLLNFPGYGFLCWQMIGKICYLFPNSSYYHFRKLVLEM 3816

Query: 542  KSNASKF 562
            KSNASKF
Sbjct: 3817 KSNASKF 3823

 Score =  204 bits (520), Expect = 7e-51
 Identities = 102/102 (100%), Positives = 102/102 (100%)
 Frame = +2

Query: 878  LKMTETLSLGLHQYHSCLINEIDMMLGSFSILSGSIPAVYQFNGSLNQILLEAFKLNKIE 1057
            LKMTETLSLGLHQYHSCLINEIDMMLGSFSILSGSIPAVYQFNGSLNQILLEAFKLNKIE
Sbjct: 3928 LKMTETLSLGLHQYHSCLINEIDMMLGSFSILSGSIPAVYQFNGSLNQILLEAFKLNKIE 3987

Query: 1058 DSIYNSIRSLYKHYFVNEIKYQNSKEFLEAYKSEFKVDFIEF 1183
            DSIYNSIRSLYKHYFVNEIKYQNSKEFLEAYKSEFKVDFIEF
Sbjct: 3988 DSIYNSIRSLYKHYFVNEIKYQNSKEFLEAYKSEFKVDFIEF 4029

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,305,189,390
Number of extensions: 42937486
Number of successful extensions: 98656
Number of sequences better than 10.0: 33
Number of HSP's gapped: 98564
Number of HSP's successfully gapped: 42
Length of query: 657
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 522
Effective length of database: 614,245,399
Effective search space: 320636098278
Effective search space used: 320636098278
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.88  gvh: 0.40  alm: 0.40  top: 0.57  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U12512-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0