Contig-U12507-1
Contig ID Contig-U12507-1
Contig update 2002.12.18
Contig sequence
>Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Contig-U12507-1Q.Seq.d
ATAATAACATCAATAGTAATGGTACCAATATAAATAATAGTAGTAGCGAA
ACAACTATAGTTAATGATGATGATGATGATGATGATGATTACGATAATGA
ATCAAATGAAAGTTTATGTGATAGTGATAAAGAGAAATTAGTTCTACCAC
CAACAATAGAAATATCAACAACCGCATCCATATCATGTTCTTCATCACAT
TCATCAGAAATTGATAATTACATTGCAAATTTGGGTCTTAAAGATGATGA
AAATATTGGTGATTCTTCAACAGAATCTGAATCAATTGATGAACATATTA
AACATCATGAAATTGAAAAACAACAGGAACAAGAACACCAAGAACACCAA
CAAGAACAAGAACAACAACAAGAACAAGAAAAAGAAGAACAACAAGAAAA
AGAAGAAAAAATCCTTGAAATTGAAAAAAAAGAGGAAGAACTAAAACAAC
AAATAACTGAAACTGATACTAGTAATACATGTGCTACTTCTACCAATAAT
ACTTCTACTACTACTTCTACTACTACTACAACAACAACAAACACTACAAC
AACTAATAATATAAATGGTACAACACCAATTACATCAAGATCATCATCAA
TTTCATCAGTATCATCATCATTATCATCATCATCATTATTATCAGCAGTA
TCAGATTCATCAGTACAATCATTAAGTTCATCAATANNNNNNNNN-----
-----AAAACTTTACGAACTTTACATAAACAACTATGAAAAGGCATTCGC
GTTGACTCGTTACTTTAAAATCAATCCAAACTATCAAGACATTCAGAAAT
CAATCTATCAGAAAGAAAAGGATATACGTTGTAGACATTTGGATTTCGGT
AGTTTCTTGGTTATTCCCATTCAAAGATTACCACGTTATATCGTGTTGTT
GAAAGAGATGGAAAAACATACACCAACCGATAATCCTGATTTCAATTTCA
TAGCATTGTCATTGGTTCAACTTCAAGATTTAACTTTATATTTAAATGAA
TCTAAAAGGAAATCAAGTAATTCCGATAAAATCGATGAAATCAAACAATC
AGTATTTGGTGCAACCGCAATCATTGGTCAAAGTAAATACATTATGGAAG
GTCAATTATCCCTCTTAAAAGGTGTTGTAGCATCAACTAAAAAAGATTTA
TTTATTTATTTATTTAAAGATTGTATAATTTGTACAGAAATTAATTCAAA
CTATCAAAAAGATGGTAGTAATAATAATAATAATAATAATAATAACAATA
GTAATAATAGTAATAGTAATAGTAGTAGTAATAATAGCGGCAGTAATAAT
AGTAGTAATAATAATTCACCAAATAATTTAACACCAAAAAAACAAACTTT
TAAATCATTGTCAACATCATCTTCAACACCAAATAATTTATCACAATCAT
CATCACCAAATAATACATTAACTCATTCCATTTCAAGTGGTGGTAATGGT
ACACAACCATTATCAAATCAATTAAATAATAGTTCAAACACTAGTAATAT
CTTTTATCAGAGAGTTATATTTAAAAGTATAACATTCTCTGATGTAAAAG
CGATTTCAGCATTAAAAAATTTTAAAGATTCTTTCCAAGTTGTTACCTCT
AAAAAAGTTTATACGTTTGTGGCACCAAACACTGATAATAGAGATAAATG
GGTTTCTGTTTTAAATGATCTTCAACAACAATTAACTCCACCACCTTCTC
CAACTTTATCAAGAAGTAATAGATTCACTGGTAGTTTATCACCAACTTTA
AAAAGAAAAAATAGAAATTCTGTACAGTTATCACAATCAAATAATAATAA
TTCCACACCTCAACAATAAAAAAAAAAAAAA

Gap gap included
Contig length 1821
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 3
Link to clone list U12507
List of clone(s)

est1=VHJ417F,1,686
est2=SLB614E,687,1813
est3=VHJ417Z,1012,1789
Translated Amino Acid sequence
NNINSNGTNINNSSSETTIVNDDDDDDDDYDNESNESLCDSDKEKLVLPPTIEISTTASI
SCSSSHSSEIDNYIANLGLKDDENIGDSSTESESIDEHIKHHEIEKQQEQEHQEHQQEQE
QQQEQEKEEQQEKEEKILEIEKKEEELKQQITETDTSNTCATSTNNTSTTTSTTTTTTTN
TTTTNNINGTTPITSRSSSISSVSSSLSSSSLLSAVSDSSVQSLSSSIXXX---

---KLYELYINNYEKAFALTRYFKINPNYQDIQKSIYQKEKDIRCRHLDFGSFLVIPIQR
LPRYIVLLKEMEKHTPTDNPDFNFIALSLVQLQDLTLYLNESKRKSSNSDKIDEIKQSVF
GATAIIGQSKYIMEGQLSLLKGVVASTKKDLFIYLFKDCIICTEINSNYQKDGSNNNNNN
NNNNSNNSNSNSSSNNSGSNNSSNNNSPNNLTPKKQTFKSLSTSSSTPNNLSQSSSPNNT
LTHSISSGGNGTQPLSNQLNNSSNTSNIFYQRVIFKSITFSDVKAISALKNFKDSFQVVT
SKKVYTFVAPNTDNRDKWVSVLNDLQQQLTPPPSPTLSRSNRFTGSLSPTLKRKNRNSVQ
LSQSNNNNSTPQQ*kkkk


Translated Amino Acid sequence (All Frames)
Frame A:
iitsivmvpi*iivvakql*lmmmmmmmmitimnqmkvyvivikrn*fyhqq*kyqqphp
yhvlhhihqkliitlqiwvlkmmkilvilqqnlnqlmnilnimklknnrnkntkntnknk
nnnknkkkknnkkkkkkslklkkkrkn*nnk*lklilvihvlllpiilllllllllqqqq
tlqqlii*mvqhqlhqdhhqfhqyhhhyhhhhyyqqyqihqynh*vhqxxx---

---ktlrtlhkql*kgirvdsll*nqsklsrhseinlserkgytl*tfgfr*flgyshsk
ittlyrvverdgktytnr*s*fqfhsivigstsrfnfifk*i*keik*fr*nr*nqtisi
wcnrnhwsk*ihygrsiiplkrccsin*krfiylfi*rlynlyrn*fklskrw*******
***q*************rq*******ftk*fntkktnf*iivniifntk*fitiiitk*y
insfhfkww*wyttiiksik**fkh**yllsesyi*kynil*cksdfsikkf*rffpscy
l*kslyvcgtkh***r*mgfcfk*ssttinsttfsnfikk**ihw*fitnfkkkk*kfct
vitik***fhtstikkkk

Frame B:
**hq**wyqyk****rnnys*********lr**ik*kfm****reissttnnrninnrih
imffitfirn**lhckfgs*r**kyw*ffnri*in**ty*ts*n*kttgtrtprtptrtr
tttrtrkrrttrkrrknp*n*kkrgrtkttnn*n*y**ymcyfyq*yfyyyfyyyynnnk
hynn**ykwyntnyikiiinfisiiiiiiiiiiissirfistiikfinxxx---

---KLYELYINNYEKAFALTRYFKINPNYQDIQKSIYQKEKDIRCRHLDFGSFLVIPIQR
LPRYIVLLKEMEKHTPTDNPDFNFIALSLVQLQDLTLYLNESKRKSSNSDKIDEIKQSVF
GATAIIGQSKYIMEGQLSLLKGVVASTKKDLFIYLFKDCIICTEINSNYQKDGSNNNNNN
NNNNSNNSNSNSSSNNSGSNNSSNNNSPNNLTPKKQTFKSLSTSSSTPNNLSQSSSPNNT
LTHSISSGGNGTQPLSNQLNNSSNTSNIFYQRVIFKSITFSDVKAISALKNFKDSFQVVT
SKKVYTFVAPNTDNRDKWVSVLNDLQQQLTPPPSPTLSRSNRFTGSLSPTLKRKNRNSVQ
LSQSNNNNSTPQQ*kkkk

Frame C:
NNINSNGTNINNSSSETTIVNDDDDDDDDYDNESNESLCDSDKEKLVLPPTIEISTTASI
SCSSSHSSEIDNYIANLGLKDDENIGDSSTESESIDEHIKHHEIEKQQEQEHQEHQQEQE
QQQEQEKEEQQEKEEKILEIEKKEEELKQQITETDTSNTCATSTNNTSTTTSTTTTTTTN
TTTTNNINGTTPITSRSSSISSVSSSLSSSSLLSAVSDSSVQSLSSSIXXX---

---nftnft*ttmkrhsr*lvtlksiqtiktfrnqsirkkriyvvdiwisvvswlfpfkd
yhviscc*krwknihqpiilisis*hchwfnfki*lyi*mnlkgnqvipiksmksnnqyl
vqpqslvkvntlwkvnyps*kvl*hqlkkiylfiylkiv*fvqkliqtikkmvviiiiii
iitiviivivivvviiaaviivviiihqii*hqknkllnhcqhhlqhqiiyhnhhhqiih
*lipfqvvvmvhnhyqin*iivqtlvisfirelylkv*hslm*krfqh*kilkilskllp
lkkfirlwhqtliieingflf*mifnnn*lhhllqlyqevidslvvyhql*kekieilys
yhnqiiiiphlnnkkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12507-1 (Contig-U12507-1Q)
/CSM_Contig/Contig-U12507-1Q.Seq.d
(1831 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti... 1017 0.0
Contig-U11814-1 (Contig-U11814-1Q) /CSM_Contig/Conti... 52 2e-06
Contig-U01683-1 (Contig-U01683-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U12201-1 (Contig-U12201-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U11170-1 (Contig-U11170-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U11152-1 (Contig-U11152-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U10168-1 (Contig-U10168-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U07033-1 (Contig-U07033-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U06353-1 (Contig-U06353-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Conti... 40 0.008

>Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Contig-U12507-1Q.Seq.d
Length = 1831

Score = 1017 bits (513), Expect = 0.0
Identities = 513/513 (100%)
Strand = Plus / Plus


Query: 706 aaaactttacgaactttacataaacaactatgaaaaggcattcgcgttgactcgttactt 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaaactttacgaactttacataaacaactatgaaaaggcattcgcgttgactcgttactt 765


Query: 766 taaaatcaatccaaactatcaagacattcagaaatcaatctatcagaaagaaaaggatat 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 taaaatcaatccaaactatcaagacattcagaaatcaatctatcagaaagaaaaggatat 825


Query: 826 acgttgtagacatttggatttcggtagtttcttggttattcccattcaaagattaccacg 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 acgttgtagacatttggatttcggtagtttcttggttattcccattcaaagattaccacg 885


Query: 886 ttatatcgtgttgttgaaagagatggaaaaacatacaccaaccgataatcctgatttcaa 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ttatatcgtgttgttgaaagagatggaaaaacatacaccaaccgataatcctgatttcaa 945


Query: 946 tttcatagcattgtcattggttcaacttcaagatttaactttatatttaaatgaatctaa 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 tttcatagcattgtcattggttcaacttcaagatttaactttatatttaaatgaatctaa 1005


Query: 1006 aaggaaatcaagtaattccgataaaatcgatgaaatcaaacaatcagtatttggtgcaac 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 aaggaaatcaagtaattccgataaaatcgatgaaatcaaacaatcagtatttggtgcaac 1065


Query: 1066 cgcaatcattggtcaaagtaaatacattatggaaggtcaattatccctcttaaaaggtgt 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 cgcaatcattggtcaaagtaaatacattatggaaggtcaattatccctcttaaaaggtgt 1125


Query: 1126 tgtagcatcaactaaaaaagatttatttatttatttatttaaagattgtataatttgtac 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 tgtagcatcaactaaaaaagatttatttatttatttatttaaagattgtataatttgtac 1185


Query: 1186 agaaattaattcaaactatcaaaaagatggtag 1218
|||||||||||||||||||||||||||||||||
Sbjct: 1186 agaaattaattcaaactatcaaaaagatggtag 1218


Score = 882 bits (445), Expect = 0.0
Identities = 483/502 (96%)
Strand = Plus / Plus


Query: 1316 tcaccaaataatttaacaccnnnnnnncaaacttttaaatcattgtcaacatcatcttca 1375
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1316 tcaccaaataatttaacaccaaaaaaacaaacttttaaatcattgtcaacatcatcttca 1375


Query: 1376 acaccaaataatttatcacaatcatcatcaccaaataatacattaactcattccatttca 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 acaccaaataatttatcacaatcatcatcaccaaataatacattaactcattccatttca 1435


Query: 1436 agtggtggtaatggtacacaaccattatcaaatcaattaaataatagttcaaacactagt 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 agtggtggtaatggtacacaaccattatcaaatcaattaaataatagttcaaacactagt 1495


Query: 1496 aatatcttttatcagagagttatatttaaaagtataacattctctgatgtaaaagcgatt 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1496 aatatcttttatcagagagttatatttaaaagtataacattctctgatgtaaaagcgatt 1555


Query: 1556 tcagcattaaaaaattttaaagattctttccaagttgttacctctaaaaaagtttatacg 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1556 tcagcattaaaaaattttaaagattctttccaagttgttacctctaaaaaagtttatacg 1615


Query: 1616 tttgtggcaccaaacactgataatagagataaatgggtttctgttttaaatgatcttcaa 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1616 tttgtggcaccaaacactgataatagagataaatgggtttctgttttaaatgatcttcaa 1675


Query: 1676 caacaattaactccaccaccttctccaactttatcaagaagtaatagattcactggtagt 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 caacaattaactccaccaccttctccaactttatcaagaagtaatagattcactggtagt 1735


Query: 1736 ttatcaccaactttnnnnnnnnnnnntagaaattctgtacagttatcacaatcaaataat 1795
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1736 ttatcaccaactttaaaaagaaaaaatagaaattctgtacagttatcacaatcaaataat 1795


Query: 1796 aataattccacacctcaacaat 1817
||||||||||||||||||||||
Sbjct: 1796 aataattccacacctcaacaat 1817


Score = 454 bits (229), Expect = e-127
Identities = 229/229 (100%)
Strand = Plus / Plus


Query: 90 tacgataatgaatcaaatgaaagtttatgtgatagtgataaagagaaattagttctacca 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tacgataatgaatcaaatgaaagtttatgtgatagtgataaagagaaattagttctacca 149


Query: 150 ccaacaatagaaatatcaacaaccgcatccatatcatgttcttcatcacattcatcagaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ccaacaatagaaatatcaacaaccgcatccatatcatgttcttcatcacattcatcagaa 209


Query: 210 attgataattacattgcaaatttgggtcttaaagatgatgaaaatattggtgattcttca 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 attgataattacattgcaaatttgggtcttaaagatgatgaaaatattggtgattcttca 269


Query: 270 acagaatctgaatcaattgatgaacatattaaacatcatgaaattgaaa 318
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acagaatctgaatcaattgatgaacatattaaacatcatgaaattgaaa 318


Score = 125 bits (63), Expect = 2e-28
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 1 ataataacatcaatagtaatggtaccaatataaataatagtagtagcgaaacaactatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataataacatcaatagtaatggtaccaatataaataatagtagtagcgaaacaactatag 60


Query: 61 tta 63
|||
Sbjct: 61 tta 63


Score = 103 bits (52), Expect = 7e-22
Identities = 52/52 (100%)
Strand = Plus / Plus


Query: 432 gaggaagaactaaaacaacaaataactgaaactgatactagtaatacatgtg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaggaagaactaaaacaacaaataactgaaactgatactagtaatacatgtg 483


Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus


Query: 554 taataatataaatggtacaacaccaattacatcaag 589
||||||||||||||||||||||||||||||||||||
Sbjct: 554 taataatataaatggtacaacaccaattacatcaag 589


>Contig-U11814-1 (Contig-U11814-1Q) /CSM_Contig/Contig-U11814-1Q.Seq.d
Length = 1505

Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus


Query: 1146 atttatttatttatttatttaaagat 1171
||||||||||||||||||||||||||
Sbjct: 1416 atttatttatttatttatttaaagat 1391


Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 1146 atttatttatttatttattta 1166
|||||||||||||||||||||
Sbjct: 1428 atttatttatttatttattta 1408


Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 1146 atttatttatttatttattta 1166
|||||||||||||||||||||
Sbjct: 1432 atttatttatttatttattta 1412


Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 1146 atttatttatttatttattta 1166
|||||||||||||||||||||
Sbjct: 1444 atttatttatttatttattta 1424


Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 1146 atttatttatttatttattta 1166
|||||||||||||||||||||
Sbjct: 1420 atttatttatttatttattta 1400


Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 1146 atttatttatttatttattta 1166
|||||||||||||||||||||
Sbjct: 1440 atttatttatttatttattta 1420


Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 1146 atttatttatttatttattta 1166
|||||||||||||||||||||
Sbjct: 1424 atttatttatttatttattta 1404


Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 1146 atttatttatttatttattta 1166
|||||||||||||||||||||
Sbjct: 1436 atttatttatttatttattta 1416


Score = 40.1 bits (20), Expect = 0.008
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 1147 tttatttatttatttattta 1166
||||||||||||||||||||
Sbjct: 1447 tttatttatttatttattta 1428


>Contig-U01683-1 (Contig-U01683-1Q) /CSM_Contig/Contig-U01683-1Q.Seq.d
Length = 973

Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus


Query: 1148 ttatttatttatttatttaaagat 1171
||||||||||||||||||||||||
Sbjct: 824 ttatttatttatttatttaaagat 801


Score = 34.2 bits (17), Expect = 0.51
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 1146 atttatttatttattta 1162
|||||||||||||||||
Sbjct: 822 atttatttatttattta 806


Score = 30.2 bits (15), Expect = 8.0
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 1148 ttatttatttatttattta 1166
|||||| ||||||||||||
Sbjct: 843 ttatttgtttatttattta 825


Score = 30.2 bits (15), Expect = 8.0
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 1146 atttatttatttatttatt 1164
|||| ||||||||||||||
Sbjct: 841 atttgtttatttatttatt 823


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,236
Number of Sequences: 6905
Number of extensions: 47236
Number of successful extensions: 9146
Number of sequences better than 10.0: 1178
length of query: 1831
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1815
effective length of database: 5,564,391
effective search space: 10099369665
effective search space used: 10099369665
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 1
Homology vs DNA
Query= Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Contig-U12507-1Q.Seq.d
(1831 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ442156) Dictyostelium discoideum cDNA clone:ddv49b06, 3' ... 807 0.0 3
(AU060826) Dictyostelium discoideum slug cDNA, clone SLB614. 977 0.0 1
(AU033919) Dictyostelium discoideum slug cDNA, clone SLB614. 694 0.0 2
(BJ423380) Dictyostelium discoideum cDNA clone:ddv49b06, 5' ... 454 e-164 4
(AC115479) Rattus norvegicus clone CH230-236B21, *** SEQUENC... 58 1e-05 7
(AL670941) Mouse DNA sequence from clone RP23-291M22 on chro... 62 8e-05 1
(AC118760) Rattus norvegicus clone CH230-152E16, *** SEQUENC... 62 8e-05 1
(AC114446) Rattus norvegicus clone CH230-288N15, WORKING DRA... 62 8e-05 1
(AC103458) Rattus norvegicus clone CH230-38P18, WORKING DRAF... 62 8e-05 1
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 42 1e-04 9
(AC154842) Mus musculus BAC clone RP23-55C11 from chromosome... 50 2e-04 2
(AL663054) Mouse DNA sequence from clone RP23-480G5 on chrom... 60 3e-04 1
(AL627222) Mouse DNA sequence from clone RP23-265A5 on chrom... 60 3e-04 1
(AC161218) Mus musculus chromosome 7, clone RP24-161J8, comp... 60 3e-04 1
(AC159993) Mus musculus chromosome 8, clone RP23-39P7, compl... 60 3e-04 1
(AC159281) Mus musculus BAC clone RP23-321H9 from chromosome... 60 3e-04 1
(AC156934) Mus musculus BAC clone RP24-425B15 from 7, comple... 60 3e-04 1
(AC154610) Mus musculus BAC clone RP23-335A11 from chromosom... 60 3e-04 1
(AC153624) Mus musculus 6 BAC RP23-117P3 (Roswell Park Cance... 60 3e-04 1
(AC122256) Mus musculus BAC clone RP23-178H7 from 7, complet... 60 3e-04 1
(AC119162) Mus musculus chromosome 3, clone RP23-231L12, com... 60 3e-04 1
(AC111117) Mus musculus chromosome 1, clone RP23-214P23, com... 60 3e-04 1
(AC145851) Dasypus novemcinctus clone VMRC5-509I16, complete... 60 3e-04 1
(AC151900) Mus musculus chromosome 7 clone RP23-312G12, WORK... 60 3e-04 1
(AC148739) Oryctolagus cuniculus clone LB1-10B23, WORKING DR... 60 3e-04 1
(AC123122) Rattus norvegicus clone CH230-17H14, *** SEQUENCI... 60 3e-04 1
(AC120735) Rattus norvegicus clone CH230-255L7, *** SEQUENCI... 60 3e-04 1
(AC111241) Rattus norvegicus clone CH230-232I8, WORKING DRAF... 60 3e-04 1
(AC098028) Rattus norvegicus clone CH230-100E6, WORKING DRAF... 60 3e-04 1
(AC095637) Rattus norvegicus clone CH230-8K5, *** SEQUENCING... 60 3e-04 1
(AC087129) Mus musculus clone RP23-106A10, WORKING DRAFT SEQ... 60 3e-04 1
(AC084829) Mus musculus clone RP23-314F23, *** SEQUENCING IN... 60 3e-04 1
(AC079574) Mus musculus clone RP23-84J17, WORKING DRAFT SEQU... 60 3e-04 1
(AP003647) Mus musculus genomic DNA, chromosome unknown clon... 60 3e-04 1
(AC173917) Atelerix albiventris clone LB4-121F16, WORKING DR... 60 3e-04 1
(AC164497) Oryctolagus cuniculus clone LB1-320B23, WORKING D... 60 3e-04 1
(AZ454867) 1M0257E01F Mouse 10kb plasmid UUGC1M library Mus ... 60 3e-04 1
(CR170617) Forward strand read from insert in 3'HPRT inserti... 60 3e-04 1
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 42 4e-04 11
(AC141540) Rattus norvegicus clone CH230-502J11, WORKING DRA... 54 4e-04 2
(AC095399) Rattus norvegicus clone CH230-7B22, WORKING DRAFT... 58 5e-04 5
(CE284950) tigr-gss-dog-17000333794087 Dog Library Canis lup... 58 6e-04 2
(CE318191) tigr-gss-dog-17000360497339 Dog Library Canis lup... 50 6e-04 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 46 0.001 10
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 46 0.001 15
(G79465) S208P6502RF5.T0 129S1/SvImJ Mus musculus STS genomi... 58 0.001 1
(BV434071) S237P6227RB12.T0 PortugueseWaterDog Canis familia... 58 0.001 1
(BV424860) S237P6196FC6.T0 PortugueseWaterDog Canis familiar... 58 0.001 1
(BV411389) S229P6391RD3.T0 GermanShepherd Canis familiaris S... 58 0.001 1
(BV390420) S243P665FF12.T0 CaliforniaCoyote Canis latrans ST... 58 0.001 1
(BV385894) S244P6212FG4.T0 AlaskaGrayWolf Canis lupus STS ge... 58 0.001 1
(BV367276) S231P6153RG10.T0 BedlingtonTerrier Canis familiar... 58 0.001 1
(BV361536) S231P6385RG10.T0 BedlingtonTerrier Canis familiar... 58 0.001 1
(BV355269) S231P668FG12.T0 BedlingtonTerrier Canis familiari... 58 0.001 1
(BV334808) S230P6348RG2.T0 Rottweiler Canis familiaris STS g... 58 0.001 1
(BV324502) S241P694FG7.T0 IndiaGrayWolf Canis lupus STS geno... 58 0.001 1
(BV296270) S239P6277FD12.T0 ChinaGrayWolf Canis lupus STS ge... 58 0.001 1
(BV294780) S232P633FE12.T0 Beagle Canis familiaris STS genom... 58 0.001 1
(BV257425) S235P6427FF9.T0 ItalianGreyhound Canis familiaris... 58 0.001 1
(BV053666) S212P6028FE10.T1 CZECHII/Ei Mus musculus STS geno... 58 0.001 1
(BV032224) S208P6760RG12.T0 129S1/SvImJ Mus musculus STS gen... 58 0.001 1
(BV025655) S208P6535FA10.T0 129S1/SvImJ Mus musculus STS gen... 58 0.001 1
(EU007907) Mus musculus arachidonate 15-lipoxygenase (Alox15... 58 0.001 1
(CU407108) Mouse DNA sequence from clone CH29-75G18 on chrom... 58 0.001 1
(CU406969) Mouse DNA sequence from clone CH29-624A16 on chro... 58 0.001 1
(CU210899) Mouse DNA sequence from clone CH29-2E15 on chromo... 58 0.001 1
(CT573086) Mouse DNA sequence from clone RP23-163K5 on chrom... 58 0.001 1
(CT571245) Mouse DNA sequence from clone RP23-2N7 on chromos... 58 0.001 1
(CT033750) Mouse DNA sequence from clone RP23-263M5 on chrom... 58 0.001 1
(CT030723) Mouse DNA sequence from clone RP23-33L24 on chrom... 58 0.001 1
(CT030722) Mouse DNA sequence from clone RP23-191N15 on chro... 58 0.001 1
(CT030702) Mouse DNA sequence from clone RP23-76I16 on chrom... 58 0.001 1
(CT030167) Mouse DNA sequence from clone RP23-333E24 on chro... 58 0.001 1
(CT010574) Mouse DNA sequence from clone RP23-269E16 on chro... 58 0.001 1
(CT010507) Mouse DNA sequence from clone RP23-259G10 on chro... 58 0.001 1
(CT009661) Mouse DNA sequence from clone CH29-621D18 on chro... 58 0.001 1
(CR933736) Mouse DNA sequence from clone DN-183N8 on chromos... 58 0.001 1
(CR933542) Mouse DNA sequence from clone DN-476D14 on chromo... 58 0.001 1
(BX682536) Mouse DNA sequence from clone RP23-190M5 on chrom... 58 0.001 1
(BX571885) Mouse DNA sequence from clone RP23-17O21 on chrom... 58 0.001 1
(BX470203) Mouse DNA sequence from clone RP23-290J11 on chro... 58 0.001 1
(BX005184) Mouse DNA sequence from clone RP23-476N7 on chrom... 58 0.001 1
(AY135691) Mus musculus argonaute 5 protein (Ago5) gene, par... 58 0.001 1
(AP003155) Mus musculus genomic DNA, chromosome 16q clone:RP... 58 0.001 1
(AP003149) Mus musculus genomic DNA, chromosome 16q clone:RP... 58 0.001 1
(AL929380) Mouse DNA sequence from clone RP23-467E8 on chrom... 58 0.001 1
(AL929303) Mouse DNA sequence from clone RP23-240M2 on chrom... 58 0.001 1
(AL928950) Mouse DNA sequence from clone RP23-70E1 on chromo... 58 0.001 1
(AL928812) Mouse DNA sequence from clone RP23-321B23 on chro... 58 0.001 1
(AL844534) Mouse DNA sequence from clone RP23-59M10 on chrom... 58 0.001 1
(AL837508) Mouse DNA sequence from clone RP23-256C7 on chrom... 58 0.001 1
(AL824704) Mouse DNA sequence from clone RP23-286H14 on chro... 58 0.001 1
(AL807249) Mouse DNA sequence from clone RP23-25C1 on chromo... 58 0.001 1
(AL732330) Mouse DNA sequence from clone RP23-130L11 on chro... 58 0.001 1
(AL672199) Mouse DNA sequence from clone RP23-171O21 on chro... 58 0.001 1
(AL672056) Mouse DNA sequence from clone RP23-467O2 on chrom... 58 0.001 1
(AL671858) Mouse DNA sequence from clone RP23-341B14 on chro... 58 0.001 1
(AL670227) Mouse DNA sequence from clone RP23-317N1 on chrom... 58 0.001 1
(AL669902) Mouse DNA sequence from clone RP23-459P8 on chrom... 58 0.001 1
(AL669869) Mouse DNA sequence from clone RP23-198E14 on chro... 58 0.001 1

>(BJ442156) Dictyostelium discoideum cDNA clone:ddv49b06, 3' end,
single read.
Length = 776

Score = 807 bits (407), Expect(3) = 0.0
Identities = 407/407 (100%)
Strand = Plus / Minus


Query: 1343 caaacttttaaatcattgtcaacatcatcttcaacaccaaataatttatcacaatcatca 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 caaacttttaaatcattgtcaacatcatcttcaacaccaaataatttatcacaatcatca 405


Query: 1403 tcaccaaataatacattaactcattccatttcaagtggtggtaatggtacacaaccatta 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcaccaaataatacattaactcattccatttcaagtggtggtaatggtacacaaccatta 345


Query: 1463 tcaaatcaattaaataatagttcaaacactagtaatatcttttatcagagagttatattt 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcaaatcaattaaataatagttcaaacactagtaatatcttttatcagagagttatattt 285


Query: 1523 aaaagtataacattctctgatgtaaaagcgatttcagcattaaaaaattttaaagattct 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaaagtataacattctctgatgtaaaagcgatttcagcattaaaaaattttaaagattct 225


Query: 1583 ttccaagttgttacctctaaaaaagtttatacgtttgtggcaccaaacactgataataga 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ttccaagttgttacctctaaaaaagtttatacgtttgtggcaccaaacactgataataga 165


Query: 1643 gataaatgggtttctgttttaaatgatcttcaacaacaattaactccaccaccttctcca 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gataaatgggtttctgttttaaatgatcttcaacaacaattaactccaccaccttctcca 105


Query: 1703 actttatcaagaagtaatagattcactggtagtttatcaccaacttt 1749
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 actttatcaagaagtaatagattcactggtagtttatcaccaacttt 58

Score = 371 bits (187), Expect(3) = 0.0
Identities = 187/187 (100%)
Strand = Plus / Minus


Query: 1031 atcgatgaaatcaaacaatcagtatttggtgcaaccgcaatcattggtcaaagtaaatac 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 atcgatgaaatcaaacaatcagtatttggtgcaaccgcaatcattggtcaaagtaaatac 717


Query: 1091 attatggaaggtcaattatccctcttaaaaggtgttgtagcatcaactaaaaaagattta 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 attatggaaggtcaattatccctcttaaaaggtgttgtagcatcaactaaaaaagattta 657


Query: 1151 tttatttatttatttaaagattgtataatttgtacagaaattaattcaaactatcaaaaa 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tttatttatttatttaaagattgtataatttgtacagaaattaattcaaactatcaaaaa 597


Query: 1211 gatggta 1217
|||||||
Sbjct: 596 gatggta 590

Score = 65.9 bits (33), Expect(3) = 0.0
Identities = 33/33 (100%)
Strand = Plus / Minus


Query: 1762 tagaaattctgtacagttatcacaatcaaataa 1794
|||||||||||||||||||||||||||||||||
Sbjct: 45 tagaaattctgtacagttatcacaatcaaataa 13

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,730,472,721
Number of extensions: 125199357
Number of successful extensions: 16249836
Number of sequences better than 10.0: 26283
Length of query: 1831
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1807
Effective length of database: 97,308,875,965
Effective search space: 175837138868755
Effective search space used: 175837138868755
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Contig-U12507-1Q.Seq.d
(1831 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

T18289(T18289) racGAP protein - slime mold (Dictyostelium discoi... 85 8e-15
(Q1ZXH8) RecName: Full=Guanine exchange factor for Rac 30; 84 2e-14
(Q55E26) RecName: Full=Rac guanine nucleotide exchange factor B;... 80 2e-13
AF326352_1(AF326352|pid:none) Caenorhabditis elegans putative Rh... 79 4e-13
AB060647_1(AB060647|pid:none) Caenorhabditis elegans exc-5 mRNA ... 79 4e-13
T19678(T19678)hypothetical protein C33D9.1 - Caenorhabditis eleg... 79 4e-13
BX005416_1(BX005416|pid:none) Zebrafish DNA sequence from clone ... 75 8e-12
AF064244_1(AF064244|pid:none) Homo sapiens intersectin long form... 74 2e-11
BX005458_2(BX005458|pid:none) Zebrafish DNA sequence from clone ... 72 5e-11
BC156473_1(BC156473|pid:none) Synthetic construct Mus musculus c... 72 7e-11
AK082606_1(AK082606|pid:none) Mus musculus 0 day neonate cerebel... 72 7e-11
(Q9Z0R4) RecName: Full=Intersectin-1; AltName: Full=EH and SH3 d... 72 7e-11
EU120733_1(EU120733|pid:none) Homo sapiens intersectin 1 long fo... 72 7e-11
(Q15811) RecName: Full=Intersectin-1; AltName: Full=SH3 domain-c... 72 7e-11
(Q9TW28) RecName: Full=Myosin-M heavy chain; AltName: Full=RhoGE... 70 2e-10
AY281052_1(AY281052|pid:none) Entamoeba histolytica guanine nucl... 67 2e-09
BC161645_1(BC161645|pid:none) Xenopus tropicalis hypothetical pr... 67 2e-09
(Q5JSP0) RecName: Full=FYVE, RhoGEF and PH domain-containing pro... 67 2e-09
AY211386_1(AY211386|pid:none) Homo sapiens FGD3 mRNA, complete c... 67 2e-09
AK000004_1(AK000004|pid:none) Homo sapiens mRNA for FLJ00004 pro... 67 3e-09
BC032429_1(BC032429|pid:none) Homo sapiens FYVE, RhoGEF and PH d... 67 3e-09
BT021872_1(BT021872|pid:none) Bos taurus FGD1 family, member 3 (... 66 4e-09
BC105139_1(BC105139|pid:none) Bos taurus FYVE, RhoGEF and PH dom... 66 4e-09
BC057726_1(BC057726|pid:none) Xenopus laevis Vav2 oncogene, mRNA... 66 5e-09
AK122480_1(AK122480|pid:none) Mus musculus premature mRNA for mK... 66 5e-09
(Q9Z0R6) RecName: Full=Intersectin-2; AltName: Full=SH3 domain-c... 66 5e-09
BC138262_1(BC138262|pid:none) Mus musculus intersectin 2, mRNA (... 66 5e-09
(Q5R5T1) RecName: Full=FYVE, RhoGEF and PH domain-containing pro... 65 6e-09
AC116957_107(AC116957|pid:none) Dictyostelium discoideum chromos... 65 6e-09
AB384587_1(AB384587|pid:none) Synthetic construct DNA, clone: pF... 65 8e-09
AF248540_1(AF248540|pid:none) Homo sapiens intersectin 2 (SH3D1B... 65 8e-09
BC146779_1(BC146779|pid:none) Homo sapiens intersectin 2, mRNA (... 65 8e-09
BC080596_1(BC080596|pid:none) Homo sapiens Rho guanine nucleotid... 65 8e-09
AK300174_1(AK300174|pid:none) Homo sapiens cDNA FLJ53189 complet... 65 8e-09
(Q9NZM3) RecName: Full=Intersectin-2; AltName: Full=SH3 domain-c... 65 8e-09
BC117171_1(BC117171|pid:none) Homo sapiens Rho guanine nucleotid... 65 8e-09
AB046846_1(AB046846|pid:none) Homo sapiens mRNA for KIAA1626 pro... 65 8e-09
AB033082_1(AB033082|pid:none) Homo sapiens mRNA for KIAA1256 pro... 65 8e-09
(Q9NVT3) RecName: Full=Rho guanine nucleotide exchange factor 10... 65 8e-09
DQ139833_1(DQ139833|pid:none) Homo sapiens Rho-specific guanine ... 65 8e-09
(Q29RM4) RecName: Full=Rho guanine nucleotide exchange factor 10... 65 8e-09
BC059220_1(BC059220|pid:none) Mus musculus Rho guanine nucleotid... 65 1e-08
AK051395_1(AK051395|pid:none) Mus musculus 12 days embryo spinal... 65 1e-08
AK157835_1(AK157835|pid:none) Mus musculus erythroblast cDNA, RI... 65 1e-08
(Q5R5M3) RecName: Full=Rho guanine nucleotide exchange factor 10... 65 1e-08
AK129408_1(AK129408|pid:none) Mus musculus mRNA for mKIAA1626 pr... 65 1e-08
(Q8VDH5) RecName: Full=Rho guanine nucleotide exchange factor 10... 65 1e-08
AL929073_6(AL929073|pid:none) Mouse DNA sequence from clone RP23... 65 1e-08
AK028648_1(AK028648|pid:none) Mus musculus 10 days neonate skin ... 64 1e-08
BC155458_1(BC155458|pid:none) Xenopus tropicalis hypothetical pr... 64 1e-08
AK126877_1(AK126877|pid:none) Homo sapiens cDNA FLJ44929 fis, cl... 64 1e-08
AY487422_1(AY487422|pid:none) Xenopus laevis epithelial cell tra... 64 2e-08
AC008073_6(AC008073|pid:none) Homo sapiens BAC clone RP11-507M3 ... 64 2e-08
BC151970_1(BC151970|pid:none) Danio rerio similar to Intersectin... 64 2e-08
BC068913_1(BC068913|pid:none) Xenopus laevis hypothetical protei... 64 2e-08
BC084325_1(BC084325|pid:none) Xenopus laevis epithelial cell tra... 62 5e-08
BC065561_1(BC065561|pid:none) Homo sapiens Rho guanine nucleotid... 62 5e-08
AC114265_7(AC114265|pid:none) Dictyostelium discoideum chromosom... 62 5e-08
(Q21653) RecName: Full=Uncharacterized protein R02F2.2; &U00055... 62 5e-08
AB002335_1(AB002335|pid:none) Homo sapiens mRNA for KIAA0337 gen... 62 7e-08
AM393506_1(AM393506|pid:none) Synthetic construct Mus musculus c... 62 7e-08
(Q96PE2) RecName: Full=Rho guanine nucleotide exchange factor 17... 62 7e-08
EF043892_1(EF043892|pid:none) Synthetic construct clone ATCC 106... 62 7e-08
(Q60992) RecName: Full=Guanine nucleotide exchange factor VAV2; ... 62 7e-08
(Q80U35) RecName: Full=Rho guanine nucleotide exchange factor 17; 62 9e-08
AK131110_1(AK131110|pid:none) Mus musculus mRNA for mFLJ00018 pr... 62 9e-08
BC052436_1(BC052436|pid:none) Mus musculus pleckstrin homology d... 62 9e-08
BC056971_1(BC056971|pid:none) Mus musculus pleckstrin homology d... 62 9e-08
AL357934_1(AL357934|pid:none) Human DNA sequence from clone RP11... 62 9e-08
AE014296_1415(AE014296|pid:none) Drosophila melanogaster chromos... 62 9e-08
AE014296_1416(AE014296|pid:none) Drosophila melanogaster chromos... 62 9e-08
AK122250_1(AK122250|pid:none) Mus musculus mRNA for mKIAA0337 pr... 62 9e-08
BC169013_1(BC169013|pid:none) Rattus norvegicus pleckstrin homol... 62 9e-08
I51940(I51940) gene VAV2 protein - human &S76992_1(S76992|pid:n... 62 9e-08
AK144152_1(AK144152|pid:none) Mus musculus cDNA, RIKEN full-leng... 62 9e-08
AE014296_1414(AE014296|pid:none) Drosophila melanogaster chromos... 62 9e-08
(Q6KAU7) RecName: Full=Pleckstrin homology domain-containing fam... 62 9e-08
AE014296_1412(AE014296|pid:none) Drosophila melanogaster chromos... 62 9e-08
BT021933_1(BT021933|pid:none) Drosophila melanogaster SD01796 fu... 62 9e-08
CR857576_1(CR857576|pid:none) Pongo abelii mRNA; cDNA DKFZp469K0... 61 1e-07
BC114732_1(BC114732|pid:none) Bos taurus FYVE, RhoGEF and PH dom... 61 2e-07
AK149626_1(AK149626|pid:none) Mus musculus bone marrow macrophag... 60 2e-07
(Q91ZT5) RecName: Full=FYVE, RhoGEF and PH domain-containing pro... 60 2e-07
AF402613_1(AF402613|pid:none) Mus musculus actin-binding protein... 60 2e-07
BC136098_1(BC136098|pid:none) Xenopus tropicalis hypothetical pr... 60 3e-07
AK044341_1(AK044341|pid:none) Mus musculus adult retina cDNA, RI... 60 3e-07
AK173157_1(AK173157|pid:none) Mus musculus mRNA for mKIAA1362 pr... 60 3e-07
AK124904_1(AK124904|pid:none) Homo sapiens cDNA FLJ42914 fis, cl... 60 3e-07
AX405929_1(AX405929|pid:none) Sequence 344 from Patent WO0222660. 60 3e-07
AK128492_1(AK128492|pid:none) Homo sapiens cDNA FLJ46642 fis, cl... 60 3e-07
AK038840_1(AK038840|pid:none) Mus musculus adult male hypothalam... 59 5e-07
BX470092_8(BX470092|pid:none) Mouse DNA sequence from clone RP23... 59 5e-07
(Q3UTH8) RecName: Full=Rho guanine nucleotide exchange factor 9;... 59 5e-07
AK295033_1(AK295033|pid:none) Homo sapiens cDNA FLJ50765 complet... 59 5e-07
BC102858_1(BC102858|pid:none) Bos taurus neuroepithelial cell tr... 59 5e-07
AK122280_1(AK122280|pid:none) Mus musculus mRNA for mKIAA0424 pr... 59 5e-07
AK295178_1(AK295178|pid:none) Homo sapiens cDNA FLJ59516 complet... 59 5e-07
AL807821_4(AL807821|pid:none) Mouse DNA sequence from clone RP23... 59 5e-07
AK289993_1(AK289993|pid:none) Homo sapiens cDNA FLJ76229 complet... 59 5e-07
AL355142_2(AL355142|pid:none) Human DNA sequence from clone RP11... 59 5e-07
(Q58DL7) RecName: Full=Rho guanine nucleotide exchange factor 9;... 59 5e-07
BX538322_1(BX538322|pid:none) Homo sapiens mRNA; cDNA DKFZp686G0... 59 5e-07
(Q5RDK0) RecName: Full=Rho guanine nucleotide exchange factor 9;... 59 5e-07
BC096846_1(BC096846|pid:none) Danio rerio epithelial cell transf... 59 6e-07
AJ302676_1(AJ302676|pid:none) Rattus norvegicus mRNA for collybi... 59 6e-07
(Q9QX73) RecName: Full=Rho guanine nucleotide exchange factor 9;... 59 6e-07
AK024429_1(AK024429|pid:none) Homo sapiens mRNA for FLJ00018 pro... 59 8e-07
BC075858_1(BC075858|pid:none) Homo sapiens pleckstrin homology d... 59 8e-07
AB220502_1(AB220502|pid:none) Macaca fascicularis mRNA, clone Qn... 59 8e-07
BC045552_1(BC045552|pid:none) Homo sapiens FYVE, RhoGEF and PH d... 59 8e-07
DQ847274_1(DQ847274|pid:none) Homo sapiens epithelial cell trans... 59 8e-07
AK023267_1(AK023267|pid:none) Homo sapiens cDNA FLJ13205 fis, cl... 59 8e-07
AK302476_1(AK302476|pid:none) Homo sapiens cDNA FLJ56270 complet... 59 8e-07
(Q9H7P9) RecName: Full=Pleckstrin homology domain-containing fam... 59 8e-07
AB002292_1(AB002292|pid:none) Human mRNA for KIAA0294 gene, part... 58 1e-06
(Q7Z628) RecName: Full=Neuroepithelial cell-transforming gene 1 ... 58 1e-06
AK016940_1(AK016940|pid:none) Mus musculus adult male testis cDN... 58 1e-06
BC042313_1(BC042313|pid:none) Xenopus laevis neuroepithelial cel... 58 1e-06
AB385304_1(AB385304|pid:none) Synthetic construct DNA, clone: pF... 58 1e-06
(Q54C71) RecName: Full=Kinase and exchange factor for Rac B; ... 58 1e-06
BC112926_1(BC112926|pid:none) Homo sapiens Rho guanine nucleotid... 58 1e-06
(O15013) RecName: Full=Rho guanine nucleotide exchange factor 10; 58 1e-06
AJ720414_1(AJ720414|pid:none) Gallus gallus mRNA for hypothetica... 58 1e-06
AB173388_1(AB173388|pid:none) Macaca fascicularis brain cDNA clo... 58 1e-06
(Q96M96) RecName: Full=FYVE, RhoGEF and PH domain-containing pro... 58 1e-06
BC072258_1(BC072258|pid:none) Xenopus laevis hypothetical protei... 58 1e-06
AK057294_1(AK057294|pid:none) Homo sapiens cDNA FLJ32732 fis, cl... 58 1e-06
G01210(G01210) guanine nucleotide regulatory protein - human &U... 58 1e-06
BC032155_1(BC032155|pid:none) Mus musculus ect2 oncogene, mRNA (... 58 1e-06
BC063738_1(BC063738|pid:none) Xenopus laevis hypothetical protei... 58 1e-06
BC023881_1(BC023881|pid:none) Mus musculus ect2 oncogene, mRNA (... 58 1e-06
AL392107_2(AL392107|pid:none) Human DNA sequence from clone RP11... 58 1e-06
AE017347_378(AE017347|pid:none) Cryptococcus neoformans var. neo... 57 2e-06
BC125701_1(BC125701|pid:none) Xenopus tropicalis neuroepithelial... 57 2e-06
(P98174) RecName: Full=FYVE, RhoGEF and PH domain-containing pro... 57 2e-06
AL805937_5(AL805937|pid:none) Mouse DNA sequence from clone RP23... 57 2e-06
AK134629_1(AK134629|pid:none) Mus musculus adult male medulla ob... 57 2e-06
AK027713_1(AK027713|pid:none) Homo sapiens cDNA FLJ14807 fis, cl... 57 2e-06
AL805937_6(AL805937|pid:none) Mouse DNA sequence from clone RP23... 57 2e-06
(Q9NR80) RecName: Full=Rho guanine nucleotide exchange factor 4;... 57 3e-06
AB384116_1(AB384116|pid:none) Synthetic construct DNA, clone: pF... 57 3e-06
AY367054_1(AY367054|pid:none) Homo sapiens actin-filament bindin... 57 3e-06
BC100154_1(BC100154|pid:none) Rattus norvegicus neuroepithelial ... 57 3e-06
(Q45FX5) RecName: Full=Protein vav-1; &DQ136172_1(DQ136172|pid:... 57 3e-06
T15778(T15778)hypothetical protein C35B8.2 - Caenorhabditis eleg... 57 3e-06
CS185607_1(CS185607|pid:none) Sequence 90 from Patent EP1591448. 57 3e-06
AB037783_1(AB037783|pid:none) Homo sapiens mRNA for KIAA1362 pro... 57 3e-06
AC009477_1(AC009477|pid:none) Homo sapiens BAC clone RP11-209H16... 57 3e-06
U23520_5(U23520|pid:none) Caenorhabditis elegans cosmid C35B8, c... 57 3e-06
AK127282_1(AK127282|pid:none) Homo sapiens cDNA FLJ45349 fis, cl... 56 5e-06
AK123040_1(AK123040|pid:none) Homo sapiens cDNA FLJ41045 fis, cl... 56 5e-06
BC059212_1(BC059212|pid:none) Mus musculus Rho guanine nucleotid... 56 5e-06
AK295166_1(AK295166|pid:none) Homo sapiens cDNA FLJ60542 complet... 56 5e-06
(Q8C033) RecName: Full=Rho guanine nucleotide exchange factor 10; 56 5e-06
BC143969_1(BC143969|pid:none) Homo sapiens vav 3 guanine nucleot... 56 5e-06
AK022884_1(AK022884|pid:none) Homo sapiens cDNA FLJ12822 fis, cl... 56 5e-06
AK294721_1(AK294721|pid:none) Homo sapiens cDNA FLJ50145 complet... 56 5e-06
AF118886_1(AF118886|pid:none) Homo sapiens VAV-3 protein beta is... 56 5e-06
AK220332_1(AK220332|pid:none) Mus musculus mRNA for mKIAA0294 pr... 56 5e-06
AK303334_1(AK303334|pid:none) Homo sapiens cDNA FLJ56188 complet... 55 7e-06
AK293288_1(AK293288|pid:none) Homo sapiens cDNA FLJ61588 partial... 55 7e-06
BX465862_4(BX465862|pid:none) Zebrafish DNA sequence from clone ... 55 7e-06
AB384583_1(AB384583|pid:none) Synthetic construct DNA, clone: pF... 55 7e-06
BX465862_5(BX465862|pid:none) Zebrafish DNA sequence from clone ... 55 7e-06
(Q9UKW4) RecName: Full=Guanine nucleotide exchange factor VAV3; ... 55 7e-06
BC085638_1(BC085638|pid:none) Danio rerio neuroepithelial cell t... 55 7e-06
AL513206_2(AL513206|pid:none) Human DNA sequence from clone RP11... 55 7e-06
BX323868_1(BX323868|pid:none) Zebrafish DNA sequence from clone ... 55 7e-06
AY383729_1(AY383729|pid:none) Mus musculus TUBA mRNA, complete c... 55 9e-06
BC156338_1(BC156338|pid:none) Synthetic construct Mus musculus c... 55 9e-06
(Q6TXD4) RecName: Full=Dynamin-binding protein; AltName: Full=Sc... 55 9e-06
AE014298_2694(AE014298|pid:none) Drosophila melanogaster chromos... 55 1e-05
AK129261_1(AK129261|pid:none) Mus musculus mRNA for mKIAA1010 pr... 55 1e-05
(Q5RDX5) RecName: Full=Ephexin-1; AltName: Full=Eph-interacting ... 54 1e-05
AJ238899_1(AJ238899|pid:none) Homo sapiens mRNA for guanine nucl... 54 1e-05
AK032452_1(AK032452|pid:none) Mus musculus adult male olfactory ... 54 1e-05
AK297390_1(AK297390|pid:none) Homo sapiens cDNA FLJ53898 complet... 54 1e-05
AK300953_1(AK300953|pid:none) Homo sapiens cDNA FLJ55312 complet... 54 1e-05
BC031573_1(BC031573|pid:none) Homo sapiens neuronal guanine nucl... 54 1e-05
(Q8N5V2) RecName: Full=Ephexin-1; AltName: Full=Eph-interacting ... 54 1e-05
AK293203_1(AK293203|pid:none) Homo sapiens cDNA FLJ59455 complet... 54 1e-05
BT059082_1(BT059082|pid:none) Salmo salar clone ssal-rgf-524-113... 54 1e-05
(Q8CHT1) RecName: Full=Ephexin-1; AltName: Full=Eph-interacting ... 54 2e-05
AB174533_1(AB174533|pid:none) Macaca fascicularis brain cDNA clo... 54 2e-05
BC040474_1(BC040474|pid:none) Homo sapiens Rho guanine nucleotid... 54 2e-05
DQ424905_1(DQ424905|pid:none) Homo sapiens clone FG060308 rho gu... 54 2e-05
AE014297_2492(AE014297|pid:none) Drosophila melanogaster chromos... 54 2e-05
AJ010045_1(AJ010045|pid:none) Mus musculus mRNA for Rho guanine ... 54 2e-05
BC076628_1(BC076628|pid:none) Mus musculus pleckstrin homology d... 54 2e-05
AK122468_1(AK122468|pid:none) Mus musculus mRNA for mKIAA1209 pr... 54 2e-05
BX469892_1(BX469892|pid:none) Zebrafish DNA sequence from clone ... 54 2e-05
CR382128_804(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 54 2e-05
AK135923_1(AK135923|pid:none) Mus musculus in vitro fertilized e... 54 2e-05
AY038025_1(AY038025|pid:none) Mus musculus ephexin mRNA, complet... 54 2e-05
BC096859_1(BC096859|pid:none) Danio rerio faciogenital dysplasia... 54 2e-05
AF017370_1(AF017370|pid:none) Danio rerio faciogenital dysplasia... 54 2e-05
BC117965_1(BC117965|pid:none) Mus musculus pleckstrin homology d... 54 2e-05
(Q9Z206) RecName: Full=Neuroepithelial cell-transforming gene 1 ... 54 2e-05
AL953867_1(AL953867|pid:none) Zebrafish DNA sequence from clone ... 53 3e-05
AF094520_1(AF094520|pid:none) Mus musculus NET1 homolog (Net1) m... 53 3e-05
AK056300_1(AK056300|pid:none) Homo sapiens cDNA FLJ31738 fis, cl... 53 3e-05
FM992692_184(FM992692|pid:none) Candida dubliniensis CD36 chromo... 53 3e-05
BC156402_1(BC156402|pid:none) Synthetic construct Homo sapiens c... 53 4e-05
AK041249_1(AK041249|pid:none) Mus musculus adult male aorta and ... 53 4e-05
EF043893_1(EF043893|pid:none) Synthetic construct clone ATCC 106... 53 4e-05
BX248779_1(BX248779|pid:none) human full-length cDNA 5-PRIME end... 53 4e-05
AB037836_1(AB037836|pid:none) Homo sapiens mRNA for KIAA1415 pro... 53 4e-05
BC157940_1(BC157940|pid:none) Mus musculus phosphatidylinositol-... 53 4e-05
(Q69ZK0) RecName: Full=Phosphatidylinositol 3,4,5-trisphosphate-... 53 4e-05
(Q96EW6) RecName: Full=Pleckstrin homology domain-containing fam... 53 4e-05
AJ320261_1(AJ320261|pid:none) Homo sapiens mRNA for P-Rex1 prote... 53 4e-05
AK293864_1(AK293864|pid:none) Homo sapiens cDNA FLJ58753 complet... 52 6e-05
AK300045_1(AK300045|pid:none) Homo sapiens cDNA FLJ55591 complet... 52 6e-05
BC123858_1(BC123858|pid:none) Bos taurus neuronal guanine nucleo... 52 6e-05
AK291412_1(AK291412|pid:none) Homo sapiens cDNA FLJ76301 complet... 52 6e-05
BC099715_1(BC099715|pid:none) Homo sapiens Rho guanine nucleotid... 52 6e-05
BC068513_1(BC068513|pid:none) Homo sapiens Rho guanine nucleotid... 52 6e-05
AK026111_1(AK026111|pid:none) Homo sapiens cDNA: FLJ22458 fis, c... 52 6e-05
AK024340_1(AK024340|pid:none) Homo sapiens cDNA FLJ14278 fis, cl... 52 6e-05
(Q9H7T4) RecName: Full=Rho guanine nucleotide exchange factor 3;... 52 7e-05
(A1IGU4) RecName: Full=Probable guanine nucleotide exchange fact... 52 7e-05
AK029872_1(AK029872|pid:none) Mus musculus adult male testis cDN... 52 7e-05
BC004009_1(BC004009|pid:none) Mus musculus FERM, RhoGEF (Arhgef)... 52 7e-05
(Q9N0A8) RecName: Full=Rho guanine nucleotide exchange factor 3;... 52 7e-05
BC005517_1(BC005517|pid:none) Mus musculus Rho guanine nucleotid... 52 7e-05
(Q91X46) RecName: Full=Rho guanine nucleotide exchange factor 3;... 52 7e-05
BC091122_1(BC091122|pid:none) Rattus norvegicus neuronal guanine... 52 7e-05
AX027844_1(AX027844|pid:none) Sequence 1 from Patent WO0040718. 52 9e-05
AB384834_1(AB384834|pid:none) Synthetic construct DNA, clone: pF... 52 9e-05
(Q9Y4F1) RecName: Full=FERM, RhoGEF and pleckstrin domain-contai... 52 9e-05
AK034403_1(AK034403|pid:none) Mus musculus adult male diencephal... 52 9e-05
BC030329_1(BC030329|pid:none) Mus musculus FERM, RhoGEF (Arhgef)... 52 9e-05
(Q5R6F2) RecName: Full=Rho guanine nucleotide exchange factor 3;... 52 9e-05
AX046921_1(AX046921|pid:none) Sequence 5 from Patent WO0068420. 52 9e-05
AB385176_1(AB385176|pid:none) Synthetic construct DNA, clone: pF... 52 9e-05
CR788310_3(CR788310|pid:none) Zebrafish DNA sequence from clone ... 52 9e-05
AB001770_1(AB001770|pid:none) Ciona savignyi pem-2 (posterior en... 51 1e-04
AB385192_1(AB385192|pid:none) Synthetic construct DNA, clone: pF... 51 2e-04
AK290135_1(AK290135|pid:none) Homo sapiens cDNA FLJ77032 partial... 51 2e-04
B47485(B47485)ABR protein 2 - human 51 2e-04
(A1IGU3) RecName: Full=Probable guanine nucleotide exchange fact... 51 2e-04
BC040275_1(BC040275|pid:none) Homo sapiens Ras protein-specific ... 51 2e-04
AK302682_1(AK302682|pid:none) Homo sapiens cDNA FLJ60982 complet... 51 2e-04
BC134844_1(BC134844|pid:none) Danio rerio zgc:161981, mRNA (cDNA... 51 2e-04
(Q12979) RecName: Full=Active breakpoint cluster region-related ... 51 2e-04
AB384846_1(AB384846|pid:none) Synthetic construct DNA, clone: pF... 51 2e-04
T16657(T16657)hypothetical protein R02F2.3 - Caenorhabditis eleg... 51 2e-04
DQ640641_1(DQ640641|pid:none) Xenopus laevis Rho guanine nucleot... 50 2e-04
(A6QNS3) RecName: Full=Active breakpoint cluster region-related ... 50 2e-04
AL591143_2(AL591143|pid:none) Mouse DNA sequence from clone RP23... 50 4e-04
(A2CEA7) RecName: Full=Ras-specific guanine nucleotide-releasing... 50 4e-04
(Q11100) RecName: Full=Putative protein tag-52; &T34079(T34079)... 50 4e-04
FN392319_1324(FN392319|pid:none) Pichia pastoris GS115 chromosom... 49 6e-04
AL732437_5(AL732437|pid:none) Human DNA sequence from clone RP11... 49 6e-04
AL845168_4(AL845168|pid:none) Zebrafish DNA sequence from clone ... 49 6e-04
AL844512_2(AL844512|pid:none) Zebrafish DNA sequence from clone ... 49 8e-04
AK002045_1(AK002045|pid:none) Homo sapiens cDNA FLJ11183 fis, cl... 49 8e-04
AL591884_1(AL591884|pid:none) Mouse DNA sequence from clone RP23... 49 8e-04
BC154459_1(BC154459|pid:none) Danio rerio similar to active brea... 49 8e-04
(A1IGU5) RecName: Full=Probable guanine nucleotide exchange fact... 48 0.001
AK300559_1(AK300559|pid:none) Homo sapiens cDNA FLJ50067 complet... 48 0.001
AK300355_1(AK300355|pid:none) Homo sapiens cDNA FLJ54440 complet... 48 0.001
AK220313_1(AK220313|pid:none) Mus musculus mRNA for mFLJ00298 pr... 48 0.001
AB199796_1(AB199796|pid:none) Homo sapiens mRNA for hypothetical... 48 0.001
AF077534_2(AF077534|pid:none) Caenorhabditis elegans cosmid K07D... 48 0.001
(P70392) RecName: Full=Ras-specific guanine nucleotide-releasing... 48 0.001
BX572633_1(BX572633|pid:none) Zebrafish DNA sequence from clone ... 48 0.001
CR854977_3(CR854977|pid:none) Zebrafish DNA sequence from clone ... 48 0.001
AK158193_1(AK158193|pid:none) Mus musculus adult inner ear cDNA,... 48 0.001
CR858031_1(CR858031|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 48 0.001
BC091160_1(BC091160|pid:none) Rattus norvegicus vav 1 guanine nu... 48 0.001
AF023130_1(AF023130|pid:none) Homo sapiens Ras-GRF2 mRNA, partia... 48 0.001
AF077534_1(AF077534|pid:none) Caenorhabditis elegans cosmid K07D... 48 0.001
FM992689_298(FM992689|pid:none) Candida dubliniensis CD36 chromo... 48 0.001
BC160596_1(BC160596|pid:none) Xenopus tropicalis hypothetical pr... 48 0.001
AK045140_1(AK045140|pid:none) Mus musculus 9.5 days embryo parth... 48 0.001
(O14827) RecName: Full=Ras-specific guanine nucleotide-releasing... 48 0.001
AY508996_1(AY508996|pid:none) Homo sapiens P-Rex2 mRNA, complete... 47 0.002
AK138884_1(AK138884|pid:none) Mus musculus 0 day neonate thymus ... 47 0.002
BC016628_1(BC016628|pid:none) Homo sapiens Src homology 3 domain... 47 0.002
(Q99JE4) RecName: Full=Ras-specific guanine nucleotide-releasing... 47 0.002
AK142414_1(AK142414|pid:none) Mus musculus 13 days embryo lung c... 47 0.002
(Q3LAC4) RecName: Full=Phosphatidylinositol 3,4,5-trisphosphate-... 47 0.002
AY508997_1(AY508997|pid:none) Homo sapiens P-Rex2B mRNA, complet... 47 0.002
BC020487_1(BC020487|pid:none) Mus musculus vav 1 oncogene, mRNA ... 47 0.002
AK088586_1(AK088586|pid:none) Mus musculus 2 days neonate thymus... 47 0.002
AK154183_1(AK154183|pid:none) Mus musculus NOD-derived CD11c +ve... 47 0.002
BC060376_1(BC060376|pid:none) Mus musculus Rho guanine nucleotid... 47 0.002
(Q8IW93) RecName: Full=Rho guanine nucleotide exchange factor 19... 47 0.003
(Q8BWA8) RecName: Full=Rho guanine nucleotide exchange factor 19... 47 0.003
(Q96N96) RecName: Full=Spermatogenesis-associated protein 13; &... 47 0.003
AK123031_1(AK123031|pid:none) Homo sapiens cDNA FLJ41035 fis, cl... 47 0.003
AK313307_1(AK313307|pid:none) Homo sapiens cDNA, FLJ93820, highl... 47 0.003
AX366204_1(AX366204|pid:none) Sequence 1 from Patent WO0206325. ... 47 0.003
CR382137_495(CR382137|pid:none) Debaryomyces hansenii strain CBS... 47 0.003
(Q9UTR5) RecName: Full=Rho1 guanine nucleotide exchange factor 2... 47 0.003
AK297394_1(AK297394|pid:none) Homo sapiens cDNA FLJ59347 complet... 47 0.003
AK301149_1(AK301149|pid:none) Homo sapiens cDNA FLJ59443 complet... 47 0.003
AB385261_1(AB385261|pid:none) Synthetic construct DNA, clone: pF... 47 0.003
BC146369_1(BC146369|pid:none) Synthetic construct Homo sapiens c... 47 0.003
AJ308233_4(AJ308233|pid:none) Tetraodon nigroviridis aw502783-li... 47 0.003
AK298717_1(AK298717|pid:none) Homo sapiens cDNA FLJ59735 complet... 47 0.003
AK160371_1(AK160371|pid:none) Homo sapiens mRNA for FLJ00298 pro... 47 0.003
(Q08DN7) RecName: Full=Proto-oncogene vav; &BC123646_1(BC123646... 47 0.003
AX181650_1(AX181650|pid:none) Sequence 7 from Patent WO0146231. 47 0.003
BC013361_1(BC013361|pid:none) Homo sapiens vav 1 guanine nucleot... 46 0.004
AK151367_1(AK151367|pid:none) Mus musculus bone marrow macrophag... 46 0.004
(P15498) RecName: Full=Proto-oncogene vav; &AF030227_1(AF030227... 46 0.004
AK301128_1(AK301128|pid:none) Homo sapiens cDNA FLJ53479 complet... 46 0.004
AK151373_1(AK151373|pid:none) Mus musculus bone marrow macrophag... 46 0.004
BT029984_1(BT029984|pid:none) Drosophila melanogaster LP16193 fu... 46 0.005
AE014298_2952(AE014298|pid:none) Drosophila melanogaster chromos... 46 0.005
(Q6PAJ1) RecName: Full=Breakpoint cluster region protein; ... 45 0.007
AK129482_1(AK129482|pid:none) Mus musculus mRNA for mKIAA3017 pr... 45 0.007
AK054242_1(AK054242|pid:none) Mus musculus 2 days pregnant adult... 45 0.007
BC154874_1(BC154874|pid:none) Xenopus tropicalis hypothetical pr... 45 0.007
CR450767_1(CR450767|pid:none) Zebrafish DNA sequence from clone ... 45 0.009
AE017349_428(AE017349|pid:none) Cryptococcus neoformans var. neo... 45 0.009
AM393217_1(AM393217|pid:none) Synthetic construct Homo sapiens c... 45 0.009
BC095043_1(BC095043|pid:none) Danio rerio zgc:109904, mRNA (cDNA... 45 0.009
AK294299_1(AK294299|pid:none) Homo sapiens cDNA FLJ56428 complet... 45 0.012
BC121371_1(BC121371|pid:none) Xenopus tropicalis Active breakpoi... 45 0.012
FN357312_14(FN357312|pid:none) Schistosoma mansoni genome sequen... 45 0.012
BC025127_1(BC025127|pid:none) Mus musculus Rho guanine nucleotid... 44 0.015
BC080423_1(BC080423|pid:none) Xenopus laevis MGC86436 protein, m... 44 0.015
FN357450_13(FN357450|pid:none) Schistosoma mansoni genome sequen... 44 0.015
AB169296_1(AB169296|pid:none) Macaca fascicularis testis cDNA, c... 44 0.015
BC098078_1(BC098078|pid:none) Xenopus tropicalis hypothetical pr... 44 0.020
AK054038_1(AK054038|pid:none) Mus musculus 2 days pregnant adult... 44 0.020
AY561277_1(AY561277|pid:none) Entamoeba dispar guanine nucleotid... 44 0.020
AY811785_1(AY811785|pid:none) Schistosoma japonicum SJCHGC03397 ... 44 0.020
AM920436_873(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 44 0.020
Y00661_1(Y00661|pid:none) Human bcr mRNA (break point cluster ge... 44 0.026
AE014296_1293(AE014296|pid:none) Drosophila melanogaster chromos... 44 0.026
BC169208_1(BC169208|pid:none) Synthetic construct Homo sapiens c... 44 0.026
FN313933_1(FN313933|pid:none) Schistosoma japonicum isolate Anhu... 44 0.026
A91848_1(A91848|pid:none) Sequence 7 from Patent WO9823743. 44 0.026
AK299909_1(AK299909|pid:none) Homo sapiens cDNA FLJ54747 complet... 43 0.034
CR382139_240(CR382139|pid:none) Debaryomyces hansenii strain CBS... 43 0.034
BC116024_1(BC116024|pid:none) Bos taurus Rho guanine nucleotide ... 43 0.044
AC004534_1(AC004534|pid:none) Homo sapiens PAC clone RP4-545C24 ... 42 0.058
BC023645_1(BC023645|pid:none) Homo sapiens FYVE, RhoGEF and PH d... 42 0.058
AK160365_1(AK160365|pid:none) Homo sapiens mRNA for FLJ00261 pro... 42 0.058
BC136661_1(BC136661|pid:none) Homo sapiens Rho guanine nucleotid... 42 0.058
AL844518_7(AL844518|pid:none) Zebrafish DNA sequence from clone ... 42 0.058
AL160264_1(AL160264|pid:none) Human DNA sequence from clone RP3-... 42 0.058
AL591143_4(AL591143|pid:none) Mouse DNA sequence from clone RP23... 42 0.075
AK122259_1(AK122259|pid:none) Mus musculus mRNA for mKIAA0362 pr... 42 0.075
BC073546_1(BC073546|pid:none) Xenopus laevis MGC82822 protein, m... 42 0.075
AK134993_1(AK134993|pid:none) Mus musculus adult male olfactory ... 42 0.075
S51620(S51620) Ost oncogene - rat &Z35654_1(Z35654|pid:none) 42 0.075
(Q63406) RecName: Full=Guanine nucleotide exchange factor DBS; A... 42 0.075
(Q64096) RecName: Full=Guanine nucleotide exchange factor DBS; A... 42 0.075
AK302500_1(AK302500|pid:none) Homo sapiens cDNA FLJ50916 complet... 42 0.098
(O15085) RecName: Full=Rho guanine nucleotide exchange factor 11... 42 0.098
BC079565_1(BC079565|pid:none) Mus musculus Rho guanine nucleotid... 42 0.098
AB002378_1(AB002378|pid:none) Homo sapiens ARHGEF11/KIAA0380 mRN... 42 0.098
AL157713_1(AL157713|pid:none) Human DNA sequence from clone RP11... 42 0.098
CP000496_186(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 41 0.13
AK295047_1(AK295047|pid:none) Homo sapiens cDNA FLJ61256 complet... 41 0.17
AB116074_1(AB116074|pid:none) Homo sapiens KIAA0362 mRNA for Ost... 41 0.17
(Q765G8) RecName: Full=Guanine nucleotide exchange factor DBS; A... 41 0.17
(Q3U5C8) RecName: Full=Rho guanine nucleotide exchange factor 16; 41 0.17
AB383861_1(AB383861|pid:none) Synthetic construct DNA, clone: pF... 41 0.17
AK295670_1(AK295670|pid:none) Homo sapiens cDNA FLJ59537 complet... 41 0.17
AL137002_5(AL137002|pid:none) Human DNA sequence from clone RP11... 41 0.17
AB116075_1(AB116075|pid:none) Homo sapiens KIAA0362 mRNA for Ost... 41 0.17
AK315969_1(AK315969|pid:none) Homo sapiens cDNA, FLJ78868 partia... 41 0.17
AL137002_1(AL137002|pid:none) Human DNA sequence from clone RP11... 41 0.17
AB002360_1(AB002360|pid:none) Human mRNA for KIAA0362 gene, part... 41 0.17
DQ895233_1(DQ895233|pid:none) Synthetic construct Homo sapiens c... 41 0.17
AK153708_1(AK153708|pid:none) Mus musculus 3 days neonate thymus... 41 0.17
CU928168_43(CU928168|pid:none) Kluyveromyces thermotolerans stra... 40 0.22
(Q9ES67) RecName: Full=Rho guanine nucleotide exchange factor 11... 40 0.22
AK030242_1(AK030242|pid:none) Mus musculus adult male testis cDN... 40 0.22
AK157225_1(AK157225|pid:none) Mus musculus activated spleen cDNA... 40 0.29
DQ344523_1(DQ344523|pid:none) Mus musculus strain B10.D2 FGD2 (F... 40 0.29
AK156151_1(AK156151|pid:none) Mus musculus activated spleen cDNA... 40 0.29
AF017368_1(AF017368|pid:none) Mus musculus faciogenital dysplasi... 40 0.29
BC027077_1(BC027077|pid:none) Mus musculus FERM, RhoGEF (Arhgef)... 40 0.29
AY301264_1(AY301264|pid:none) Mus musculus strain C57BL/6J chrom... 40 0.29
AE013599_2885(AE013599|pid:none) Drosophila melanogaster chromos... 40 0.37
FN357918_10(FN357918|pid:none) Schistosoma mansoni genome sequen... 40 0.37
AE017344_369(AE017344|pid:none) Cryptococcus neoformans var. neo... 40 0.37
CP000501_264(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 40 0.37
(P40995) RecName: Full=Rho guanine nucleotide exchange factor sc... 40 0.37
CR749203_1(CR749203|pid:none) Homo sapiens mRNA; cDNA DKFZp686N1... 39 0.49
FN357341_2(FN357341|pid:none) Schistosoma mansoni genome sequenc... 39 0.64
AK220153_1(AK220153|pid:none) Mus musculus mRNA for mFLJ00274 pr... 39 0.64
(Q80UZ0) RecName: Full=FYVE, RhoGEF and PH domain-containing pro... 39 0.64
AY570973_1(AY570973|pid:none) Homo sapiens PtdIns(3,4,5)-depende... 39 0.64
BC042732_1(BC042732|pid:none) Mus musculus FYVE, RhoGEF and PH d... 39 0.64
AY533677_1(AY533677|pid:none) Homo sapiens BCR mRNA, partial cds. 39 0.64
AL109627_10(AL109627|pid:none) Human DNA sequence from clone RP4... 38 1.1
BX294379_2(BX294379|pid:none) Zebrafish DNA sequence from clone ... 38 1.4
CU928176_206(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 37 1.9
AB097001_1(AB097001|pid:none) Homo sapiens mRNA for putative NFk... 37 2.4
CR382132_570(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 37 2.4
CR382127_345(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 37 2.4
BC149570_1(BC149570|pid:none) Bos taurus Rho guanine exchange fa... 37 3.2
AK095984_1(AK095984|pid:none) Homo sapiens cDNA FLJ38665 fis, cl... 37 3.2
AM920436_700(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 37 3.2
BT030674_1(BT030674|pid:none) Bos taurus Rho guanine exchange fa... 37 3.2
AL954710_7(AL954710|pid:none) Mouse DNA sequence from clone RP23... 37 3.2
BC159358_1(BC159358|pid:none) Xenopus tropicalis hypothetical pr... 36 5.4
(Q1ZXD6) RecName: Full=Probable serine/threonine-protein kinase ... 36 5.4
BC166429_1(BC166429|pid:none) Rattus norvegicus hypothetical pro... 36 5.4
BC086736_1(BC086736|pid:none) Danio rerio Rho guanine nucleotide... 35 7.0
BC066783_1(BC066783|pid:none) Xenopus tropicalis hypothetical pr... 35 7.0
DQ656109_1(DQ656109|pid:none) Danio rerio Rho guanine exchange f... 35 7.0
AK296488_1(AK296488|pid:none) Homo sapiens cDNA FLJ50789 complet... 35 9.2
AL033403_7(AL033403|pid:none) Human DNA sequence from clone RP6-... 35 9.2
AY889643_1(AY889643|pid:none) Synthetic construct Homo sapiens c... 35 9.2
(Q9Y7U6) RecName: Full=Rho1 guanine nucleotide exchange factor 1... 35 9.2
J03639_1(J03639|pid:none) Human DBL oncogene encoding a transfor... 35 9.2
AK294929_1(AK294929|pid:none) Homo sapiens cDNA FLJ51737 complet... 35 9.2
AK295709_1(AK295709|pid:none) Homo sapiens cDNA FLJ50776 complet... 35 9.2
AL117435_1(AL117435|pid:none) Homo sapiens mRNA; cDNA DKFZp434I2... 35 9.2
AL158217_10(AL158217|pid:none) Human DNA sequence from clone RP4... 35 9.2
(Q6ZNL6) RecName: Full=FYVE, RhoGEF and PH domain-containing pro... 35 9.2
AL033403_6(AL033403|pid:none) Human DNA sequence from clone RP6-... 35 9.2
AL158217_12(AL158217|pid:none) Human DNA sequence from clone RP4... 35 9.2
AL033403_2(AL033403|pid:none) Human DNA sequence from clone RP6-... 35 9.2
(Q58EX7) RecName: Full=Puratrophin-1; AltName: Full=Pleckstrin h... 35 9.2
BC043505_1(BC043505|pid:none) Homo sapiens Rac/Cdc42 guanine nuc... 35 9.2
AK301239_1(AK301239|pid:none) Homo sapiens cDNA FLJ59769 complet... 35 9.2
BC054486_1(BC054486|pid:none) Homo sapiens pleckstrin homology d... 35 9.2
AL117234_1(AL117234|pid:none) Novel human gene mapping to chomos... 35 9.2
AL158217_11(AL158217|pid:none) Human DNA sequence from clone RP4... 35 9.2
AL158217_9(AL158217|pid:none) Human DNA sequence from clone RP4-... 35 9.2
AL033403_3(AL033403|pid:none) Human DNA sequence from clone RP6-... 35 9.2
AB385194_1(AB385194|pid:none) Synthetic construct DNA, clone: pF... 35 9.2
(P10911) RecName: Full=Proto-oncogene DBL; AltName: Full=Proto-o... 35 9.2
(Q5VV41) RecName: Full=Rho guanine nucleotide exchange factor 16... 35 9.2
D25304_1(D25304|pid:none) Homo sapiens KIAA0006 mRNA, partial cds. 35 9.2
(Q15052) RecName: Full=Rho guanine nucleotide exchange factor 6;... 35 9.2
X12556_1(X12556|pid:none) Human mRNA for dbl proto-oncogene. 35 9.2
AL512413_2(AL512413|pid:none) Human DNA sequence from clone RP11... 35 9.2
AB085901_1(AB085901|pid:none) Homo sapiens DBL mRNA for DBL prot... 35 9.2

>T18289(T18289) racGAP protein - slime mold (Dictyostelium discoideum)
&Y10159_1(Y10159|pid:none)
Length = 1335

Score = 85.1 bits (209), Expect = 8e-15
Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 3/171 (1%)
Frame = +2

Query: 707 KLYELYINNYEKAFALTRYFKINPNYQDIQKSIYQKEKDIRCRHLDFGSFLVIPIQRLPR 886
KLY+ Y+NNY+K+ K Y + + + +L SFLV+PIQ LPR
Sbjct: 881 KLYKHYVNNYDKSIRTLNQCK--EKYDGFKTYMASLDYSENLSNLSLESFLVLPIQPLPR 938

Query: 887 YIVLLKEMEKHTPTDNPDFNFIALSLVQLQDLTLYLNESKRKSSNSDKIDEIKQSV--FG 1060
Y++LL+++ K+T D+ DFN + +L ++DLT +N K + N+ KI ++++ +
Sbjct: 939 YVMLLQDLLKYTANDHEDFNQLCEALSTIKDLTESINTKKSEEDNNTKILQVQEQIKDMP 998

Query: 1061 ATAIIGQSKYIMEGQLSLLKGVVASTKKD-LFIYLFKDCIICTEINSNYQK 1210
+ + +++ EG L+L KKD +++LF D +I T+ +K
Sbjct: 999 PNTMTLRKRFVTEGALTL--------KKDKYYVFLFTDRMILTKPGKEKKK 1041

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,679,121,849
Number of extensions: 28543371
Number of successful extensions: 60239
Number of sequences better than 10.0: 439
Number of HSP's gapped: 60078
Number of HSP's successfully gapped: 439
Length of query: 610
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 475
Effective length of database: 614,245,399
Effective search space: 291766564525
Effective search space used: 291766564525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.70 gvh: 0.43 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U12507-1 is nuc

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0