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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01951-1
Contig ID Contig-U01951-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01951-1 (Contig-U01951-1Q) /CSM_Contig/Contig-U01951-1Q.Seq.d
ATTGATAAAAGAGATGATGATATCTCTAAATTACAACAAAAACAAAAACA
AGATCAAACGGAAATTTTCGAATTGAAAAAGAACCTCCAGATTAGAAATA
AAGAAAATAGATCTTTTAACAATTTTGTAAATTCATTAAAACCATCACCT
GCAACTTATCATCAAACTAAAATTGATGAATTAAAAGTAACTGAAGTACC
AATGTTACTACAAGAATATAAACAAATTATTAATCAACTTAAAGCAACCC
AAGATGCTTTAAAAAAATTACAACAACAACAACAACTATAACAACAATAA
TAATTCCAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAC----------TTTTAACCAATTTGGCCCACATCCCTTACACCCCT
CCCCTGACACAATTTCCTCCCCCTTACATTGGGGGACTTCCAAGGGCACT
GGAGTTCCCATNCTTCTCACAGGATTTTAACAACATTTTTTCTCCAACTT
TAAGGCCCCCCAGGTGCTTTTACAAAATTTCCACCACCGACGAGCCAACT
TTTAAGACCATTATTATTTCCAAGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACAAACCCTAGAAAATATTTAAATTATTCAAATAAAA
AAACAATTATAAAATATTTTAAAAAAAT
Gap gap included
Contig length 668
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2818170
End point 2818531
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U01951
List of clone(s) 

est1=SSL622F,1,350
est2=SSL670F,1,356
est3=SSL622Z,357,670
Translated Amino Acid sequence 
**kr**yl*ittktktrsngnfriekeppd*k*rk*if*qfckfiktitcnlssn*n**i
ksn*stnvttri*tny*st*SNPRCFKKITTTTTTITTIIIPKKKKKKKKKKKKKKK---

---LTNLAHIPYTPPLTQFPPPYIGGLPRALEFPXFSQDFNNIFSPTLRPPRCFYKISTT
DEPTFKTIIISKEKKKKKKKKKKKKTNPRKYLNYSNKKTIIKYFKK
Translated Amino Acid sequence (All Frames) 
Frame A:
idkrdddisklqqkqkqdqteifelkknlqirnkenrsfnnfvnslkpspatyhqtkide
lkvtevpmllqeykqiinqlkatqdalkklqqqqql*qq**fqrkkkkkkkkkkkkkk--
-

---f*piwptsltplp*hnflpltlgdfqghwsshxshrilttfflql*gppgaftkfpp
ptsqllrpllfprkkkkkkkkkkkkkqtleni*iiqikkql*nilkk

Frame B:
likemmislnynknknkikrkfsn*krtsrleikkidlltil*ih*nhhlqliiklklmn
*k*lkyqcyykninkllinlkqpkml*knynnnnnynnnnnskekkkkkkkkkkkkkn--
-

---fnqfgphplhpspdtissplhwgtskgtgvpxlltgf*qhffsnfkapqvllqnfhh
rranf*dhyyfqgkkkkkkkkkkkknkp*kifklfk*knnykif*kn

Frame C:
**kr**yl*ittktktrsngnfriekeppd*k*rk*if*qfckfiktitcnlssn*n**i
ksn*stnvttri*tny*st*SNPRCFKKITTTTTTITTIIIPKKKKKKKKKKKKKKK---

---LTNLAHIPYTPPLTQFPPPYIGGLPRALEFPXFSQDFNNIFSPTLRPPRCFYKISTT
DEPTFKTIIISKEKKKKKKKKKKKKTNPRKYLNYSNKKTIIKYFKK
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01951-1 (Contig-U01951-1Q)
/CSM_Contig/Contig-U01951-1Q.Seq.d
         (678 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01951-1 (Contig-U01951-1Q) /CSM_Contig/Conti...   575  e-164
Contig-U12176-1 (Contig-U12176-1Q) /CSM_Contig/Conti...    54  2e-07
Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Conti...    54  2e-07
Contig-U14400-1 (Contig-U14400-1Q) /CSM_Contig/Conti...    52  8e-07
Contig-U12056-1 (Contig-U12056-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U11587-1 (Contig-U11587-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U11240-1 (Contig-U11240-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U05483-1 (Contig-U05483-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U05147-1 (Contig-U05147-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U13027-1 (Contig-U13027-1Q) /CSM_Contig/Conti...    48  1e-05

>Contig-U01951-1 (Contig-U01951-1Q) /CSM_Contig/Contig-U01951-1Q.Seq.d
          Length = 678

 Score =  575 bits (290), Expect = e-164
 Identities = 304/311 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgataaaagagatgatgatatctctaaattacaacaaaaacaaaaacaagatcaaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attgataaaagagatgatgatatctctaaattacaacaaaaacaaaaacaagatcaaacg 60

                                                                       
Query: 61  gaaattttcgaattgaaaaagaacctccagattagaaataaagaaaatagatcttttaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaattttcgaattgaaaaagaacctccagattagaaataaagaaaatagatcttttaac 120

                                                                       
Query: 121 aattttgtaaattcattaaaaccatcacctgcaacttatcatcaaactaaaattgatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattttgtaaattcattaaaaccatcacctgcaacttatcatcaaactaaaattgatgaa 180

                                                                       
Query: 181 ttaaaagtaactgaagtaccaatgttactacaagaatataaacaaattattaatcaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttaaaagtaactgaagtaccaatgttactacaagaatataaacaaattattaatcaactt 240

                                                                       
Query: 241 aaagcaacccaagatgctttnnnnnnnttacaacaacaacaacaactataacaacaataa 300
           ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 241 aaagcaacccaagatgctttaaaaaaattacaacaacaacaacaactataacaacaataa 300

                      
Query: 301 taattccaaag 311
           |||||||||||
Sbjct: 301 taattccaaag 311


 Score =  410 bits (207), Expect = e-115
 Identities = 210/210 (100%)
 Strand = Plus / Plus

                                                                       
Query: 366 ttttaaccaatttggcccacatcccttacacccctcccctgacacaatttcctccccctt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttttaaccaatttggcccacatcccttacacccctcccctgacacaatttcctccccctt 425

                                                                       
Query: 426 acattgggggacttccaagggcactggagttcccatncttctcacaggattttaacaaca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acattgggggacttccaagggcactggagttcccatncttctcacaggattttaacaaca 485

                                                                       
Query: 486 ttttttctccaactttaaggccccccaggtgcttttacaaaatttccaccaccgacgagc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttttttctccaactttaaggccccccaggtgcttttacaaaatttccaccaccgacgagc 545

                                         
Query: 546 caacttttaagaccattattatttccaagg 575
           ||||||||||||||||||||||||||||||
Sbjct: 546 caacttttaagaccattattatttccaagg 575


>Contig-U12176-1 (Contig-U12176-1Q) /CSM_Contig/Contig-U12176-1Q.Seq.d
          Length = 843

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||| | |||||||||||||||
Sbjct: 293 acaacaacaacaacaacaacaacaacaataataat 327


 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||| |||| || |||||||||
Sbjct: 302 acaacaacaacaacaacaataataataataataat 336


 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||| | ||||| |||||||||
Sbjct: 296 acaacaacaacaacaacaacaacaataataataat 330


 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||| | |||||||| ||||||
Sbjct: 290 acaacaacaacaacaacaacaacaacaacaataat 324


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 270 acaacaacaacaacaactataacaacaa 297
           ||||||||||||||||| | ||||||||
Sbjct: 287 acaacaacaacaacaacaacaacaacaa 314


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 270 acaacaacaacaacaactataacaacaa 297
           ||||||||||||||||| | ||||||||
Sbjct: 284 acaacaacaacaacaacaacaacaacaa 311


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 270 acaacaacaacaacaactataacaacaa 297
           ||||||||||||||||| | ||||||||
Sbjct: 281 acaacaacaacaacaacaacaacaacaa 308


 Score = 38.2 bits (19), Expect = 0.012
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||  |||| || |||||||||
Sbjct: 305 acaacaacaacaacaataataataataataataat 339


 Score = 38.2 bits (19), Expect = 0.012
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||| | || || |||||||||
Sbjct: 299 acaacaacaacaacaacaacaataataataataat 333


 Score = 38.2 bits (19), Expect = 0.012
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 271 caacaacaacaacaactataacaacaa 297
           |||||||||||||||| | ||||||||
Sbjct: 279 caacaacaacaacaacaacaacaacaa 305


>Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Contig-U11429-1Q.Seq.d
          Length = 3542

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||| | |||||||||||||||
Sbjct: 98  acaacaacaacaacaacaacaacaacaataataat 132


 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||| | ||||| |||||||||
Sbjct: 101 acaacaacaacaacaacaacaacaataataataat 135


 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||| | |||||||| ||||||
Sbjct: 95  acaacaacaacaacaacaacaacaacaacaataat 129


 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 270 acaacaacaacaacaactataacaacaataataa 303
           ||||||||||||||||| |||| || ||||||||
Sbjct: 107 acaacaacaacaacaacaataataataataataa 140


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 270 acaacaacaacaacaactataacaacaa 297
           ||||||||||||||||| | ||||||||
Sbjct: 92  acaacaacaacaacaacaacaacaacaa 119


 Score = 38.2 bits (19), Expect = 0.012
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 268  ttacaacaacaacaacaac 286
            |||||||||||||||||||
Sbjct: 3416 ttacaacaacaacaacaac 3434


 Score = 38.2 bits (19), Expect = 0.012
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 270 acaacaacaacaacaactataacaacaataataat 304
           ||||||||||||||||| | || || |||||||||
Sbjct: 104 acaacaacaacaacaacaacaataataataataat 138


 Score = 36.2 bits (18), Expect = 0.047
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                     
Query: 272 aacaacaacaacaactataacaacaa 297
           ||||||||||||||| | ||||||||
Sbjct: 91  aacaacaacaacaacaacaacaacaa 116


 Score = 34.2 bits (17), Expect = 0.19
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 270  acaacaacaacaacaac 286
            |||||||||||||||||
Sbjct: 3424 acaacaacaacaacaac 3440


 Score = 34.2 bits (17), Expect = 0.19
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 270  acaacaacaacaacaac 286
            |||||||||||||||||
Sbjct: 3421 acaacaacaacaacaac 3437


 Score = 32.2 bits (16), Expect = 0.74
 Identities = 25/28 (89%)
 Strand = Plus / Plus

                                       
Query: 270 acaacaacaacaacaactataacaacaa 297
           |||| |||||||||||| | ||||||||
Sbjct: 86  acaataacaacaacaacaacaacaacaa 113


 Score = 32.2 bits (16), Expect = 0.74
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                
Query: 32   tacaacaaaaacaaaaacaa 51
            |||||||| |||||||||||
Sbjct: 3303 tacaacaagaacaaaaacaa 3322


 Score = 32.2 bits (16), Expect = 0.74
 Identities = 25/28 (89%)
 Strand = Plus / Plus

                                        
Query: 270  acaacaacaacaacaactataacaacaa 297
            ||||||||||||||| | | ||||||||
Sbjct: 3427 acaacaacaacaacagcaacaacaacaa 3454


 Score = 32.2 bits (16), Expect = 0.74
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                    
Query: 273  acaacaacaacaactataacaaca 296
            |||||||||||||| | |||||||
Sbjct: 3418 acaacaacaacaacaacaacaaca 3441


 Score = 30.2 bits (15), Expect = 2.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 288 ataacaacaataata 302
           |||||||||||||||
Sbjct: 446 ataacaacaataata 460


 Score = 30.2 bits (15), Expect = 2.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 268  ttacaacaacaacaa 282
            |||||||||||||||
Sbjct: 3272 ttacaacaacaacaa 3286


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,398
Number of Sequences: 6905
Number of extensions: 19398
Number of successful extensions: 9074
Number of sequences better than 10.0: 1050
length of query: 678
length of database: 5,674,871
effective HSP length: 16
effective length of query: 662
effective length of database: 5,564,391
effective search space: 3683626842
effective search space used: 3683626842
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.10
Homology vs DNA 
Query= Contig-U01951-1 (Contig-U01951-1Q) /CSM_Contig/Contig-U01951-1Q.Seq.d
         (678 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU074723) Dictyostelium discoideum slug cDNA, clone SSL670.      476   e-130  1
(AU074712) Dictyostelium discoideum slug cDNA, clone SSL622.      476   e-130  1
(C93699) Dictyostelium discoideum slug cDNA, clone SSL622.        410   e-110  1
(AC027053) Homo sapiens chromosome 4 clone RP11-56I8 map 4, ...    52   0.014  3
(AC093584) Homo sapiens BAC clone RP13-531E5 from 4, complet...    52   0.028  1
(AC083786) Homo sapiens chromosome 16 clone RP11-339C18 map ...    52   0.028  1
(AC034113) Homo sapiens clone RP11-23C24, WORKING DRAFT SEQU...    52   0.028  1
(AC092795) Homo sapiens chromosome 3 clone RP11-9J18, comple...    48   0.044  2
(CU431072) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    50   0.11   1
(AC064836) Homo sapiens BAC clone RP11-686O6 from 2, complet...    40   0.15   3
(AC154772) Mus musculus BAC clone RP24-448H7 from chromosome...    48   0.44   1
(AC154735) Mus musculus BAC clone RP24-383B6 from chromosome...    48   0.44   1
(AC121114) Mus musculus chromosome 15, clone RP23-63M19, com...    48   0.44   1
(AC189719) Canis familiaris, clone XX-228B21, complete seque...    48   0.44   1
(AC130142) Rattus norvegicus clone CH230-182P1, *** SEQUENCI...    48   0.44   1
(AC118789) Rattus norvegicus clone CH230-416I20, *** SEQUENC...    48   0.44   1
(AC118447) Rattus norvegicus clone CH230-415L8, WORKING DRAF...    48   0.44   1
(AC116296) Rattus norvegicus clone CH230-88H17, *** SEQUENCI...    48   0.44   1
(AC099433) Rattus norvegicus clone CH230-160L12, WORKING DRA...    48   0.44   1
(AC087870) Mus musculus clone RP23-331I5, WORKING DRAFT SEQU...    48   0.44   1
(EJ897214) 1093018473155 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.44   1
(CC862493) NDL.124F24.T7 Notre Dame Liverpool Aedes aegypti ...    48   0.44   1
(AG011572) Homo sapiens genomic DNA, 21q region, clone: T195...    48   0.44   1
(AM942759) Proteus mirabilis strain HI4320, complete genome.       48   0.44   1
(AC208128) Macaca mulatta  BAC CH250-502N18 (Children's Hosp...    38   0.47   3
(CR536614) Zebrafish DNA sequence from clone CH211-154E6 in ...    36   0.49   5
(AC190302) Rhesus Macaque  BAC CH250-336I1 () complete seque...    44   0.50   3
(AC156277) Mus musculus 6 BAC RP24-309B5 (Roswell Park Cance...    42   0.50   3
(AC127684) Mus musculus BAC clone RP24-171J12 from chromosom...    42   0.66   3
(GC699363) Sequence 14608 from patent US 6812339.                  42   0.68   4
(CU651631) Zebrafish DNA sequence from clone CH1073-179P4 in...    42   0.69   2
(CU468419) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.69   3
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   0.74   11
(AC107372) Mus musculus clone RP24-259G13, WORKING DRAFT SEQ...    34   0.88   2
(AC118203) Mus musculus clone RP24-311K16, WORKING DRAFT SEQ...    34   0.88   2
(AC139570) Mus musculus chromosome UNK clone RP24-249K20, WO...    34   0.91   2
(AL772407) Mouse DNA sequence from clone RP23-112N9 on chrom...    34   0.92   2
(AC151089) Bos taurus clone CH240-125A20, WORKING DRAFT SEQU...    36   0.92   2
(AC112522) Mus musculus chromosome UNK clone RP23-188B3, WOR...    34   0.93   2
(AC115458) Rattus norvegicus 13 BAC CH230-190J23 (Children's...    46   1.1    2
(AC157575) Mus musculus BAC clone RP23-16D16 from 9, complet...    46   1.2    4
(AC073971) Homo sapiens BAC clone RP11-168G24 from 2, comple...    42   1.4    2
(CS468856) Sequence 47 from Patent EP1748080.                      34   1.6    5
(CS468855) Sequence 46 from Patent EP1748080.                      34   1.6    5
(CS419333) Sequence 47 from Patent WO2006094836.                   34   1.6    5
(CS419332) Sequence 46 from Patent WO2006094836.                   34   1.6    5
(CR847860) Zebrafish DNA sequence from clone DKEY-193E5 in l...    46   1.7    1
(CR846096) Zebrafish DNA sequence from clone DKEYP-8C10 in l...    46   1.7    1
(BV433013) S237P627FE11.T0 PortugueseWaterDog Canis familiar...    46   1.7    1
(AL732552) Mouse DNA sequence from clone RP23-145O14 on chro...    46   1.7    1
(AC093483) Mus musculus chromosome 9, clone RP23-79K5, compl...    46   1.7    1
(AC090443) Mus musculus strain C57BL6/J chromosome 5 clone R...    46   1.7    1
(AC022236) Mus musculus strain C57BL6/J chromosome 5 clone R...    46   1.7    1
(AX344828) Sequence 253 from Patent WO0200927.                     46   1.7    1
(AL356860) Human DNA sequence from clone RP4-815A16 on chrom...    46   1.7    1
(AC093495) Homo sapiens chromosome 3 clone RP11-434D12 map 3...    46   1.7    1
(AC090886) Homo sapiens chromosome 3 clone RP11-320K24 map 3...    46   1.7    1
(AC090645) Homo sapiens chromosome 3 clone RP11-556G18 map 3...    46   1.7    1
(AC090004) Homo sapiens chromosome 3 clone RP11-14A10 map 3p...    46   1.7    1
(AC132176) Rattus norvegicus clone CH230-142C4, WORKING DRAF...    46   1.7    1
(AC099236) Rattus norvegicus clone CH230-99J19, WORKING DRAF...    46   1.7    1
(AC069194) Homo sapiens chromosome 11 clone CTD-2028C20 map ...    46   1.7    1
(AC069107) Homo sapiens chromosome 11 clone CTD-2011G11 map ...    46   1.7    1
(CR954249) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.7    1
(AC199788) Zea mays chromosome 3 clone CH201-205B7; ZMMBBc02...    46   1.7    1
(AC193624) Zea mays chromosome 3 clone CH201-306K17; ZMMBBc0...    46   1.7    1
(AC164639) Mus musculus chromosome 5 clone RP23-200F3, WORKI...    46   1.7    1
(FH499883) CHO_OF4184xk06r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.7    1
(FH213682) CHO_OF3371xf10f1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.7    1
(EJ920174) 1093018622674 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.7    1
(EJ836347) 1093017643782 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.7    1
(EJ692711) 1092956008561 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.7    1
(EJ690886) 1092956003185 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.7    1
(AG486436) Mus musculus molossinus DNA, clone:MSMg01-382I23....    46   1.7    1
(CC432140) PUHGE33TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   1.7    1
(BM912974) AGENCOURT_6613879 NIH_MGC_41 Homo sapiens cDNA cl...    46   1.7    1
(CP001251) Dictyoglomus turgidum DSM 6724, complete genome.        46   1.7    1
(AC096672) Trypanosoma brucei chromosome 4 clone RPCI93-24M1...    42   1.9    3
(AE014177) Mus musculus piebald deletion region section 5 of...    36   2.0    4
(BS000541) Pan troglodytes chromosome Y clone:PTB-180G05, co...    34   2.0    4
(AC152418) Mus musculus BAC clone RP23-7L11 from chromosome ...    42   2.1    4
(FP015819) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   2.4    3
(AC216059) Mus musculus BAC clone CH36-80N22 from chromosome...    40   2.5    2
(CE771709) tigr-gss-dog-17000330599679 Dog Library Canis lup...    40   2.5    2
(AC204974) Homo sapiens FOSMID clone ABC9-43852100D22 from c...    44   2.6    2
(AC127377) Mus musculus BAC clone RP23-51N3 from chromosome ...    44   2.6    3
(AC219940) Bos taurus clone CH240-318E6, WORKING DRAFT SEQUE...    44   3.0    3
(AC198642) Macaca mulatta chromosome 11 clone CH250-130J20, ...    38   3.0    4
(AC007954) Homo sapiens chromosome 14 clone RP11-493G17 and ...    44   3.1    2
(AC097344) Rattus norvegicus clone CH230-171C13, WORKING DRA...    38   3.2    2
(AL731712) Mouse DNA sequence from clone RP23-100M24 on chro...    34   3.3    2
(AC188111) Pongo abelii chromosome UNK clone CH276-78H12, co...    34   3.3    2
(AC159213) Pan troglodytes BAC clone CH251-624P14 from chrom...    34   3.6    4
(EY812243) PT11-C1-900-029-C04-CT.F Poncirus trifoliata leaf...    40   3.9    2
(AC159014) Pan troglodytes BAC clone CH251-852A24 from chrom...    34   4.0    4
(CT748607) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   4.2    2
(AM627137) Entamoeba dispar GSS, clone dispar1c07.q1k.             40   4.3    2
(EE136795) SiJWG06AAS Lausanne fire ant library Solenopsis i...    34   4.6    2
(EE129550) SiJWB04ACS Lausanne fire ant library Solenopsis i...    34   4.6    2
(EE219430) LB01250.CR_N21 GC_BGC-12 Bos taurus cDNA clone IM...    36   5.1    2
(EE219325) LB01250.CR_H05 GC_BGC-12 Bos taurus cDNA clone IM...    36   5.1    2
(AG338378) Mus musculus molossinus DNA, clone:MSMg01-130K24....    38   5.2    2
(AB209049) Homo sapiens mRNA for nucleoside-diphosphate kina...    40   5.3    2
(AC097972) Rattus norvegicus clone CH230-146N20, *** SEQUENC...    36   5.3    8
(AC167114) Dasypus novemcinctus clone VMRC5-428G17, WORKING ...    44   5.4    3
(AC093767) Homo sapiens BAC clone RP11-107E21 from 4, comple...    40   5.7    3
(CU469457) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.9    3
(AC175380) Mus musculus BAC clone RP24-333L5 from chromosome...    44   6.7    3
(BH148062) ENTPW52TF Entamoeba histolytica Sheared DNA Entam...    36   6.8    3
(CU550714) Zebrafish DNA sequence from clone CH1073-501A1 in...    44   6.9    1
(CT025776) Zebrafish DNA sequence from clone DKEY-5I3 in lin...    44   6.9    1
(BC124711) Danio rerio zgc:153642, mRNA (cDNA clone MGC:1536...    44   6.9    1
(AL929247) Zebrafish DNA sequence from clone CH211-152J7 in ...    44   6.9    1
(AL831748) Zebrafish DNA sequence from clone DKEY-70P6 in li...    44   6.9    1
(BV076524) S208P6185FF9.T0 129S1/SvImJ Mus musculus STS geno...    44   6.9    1
(AL627445) Mouse DNA sequence from clone RP23-81D2 on chromo...    44   6.9    1
(AC156608) Mus musculus chromosome 8, clone RP23-303A11, com...    44   6.9    1
(AC140468) Mus musculus BAC clone RP24-394C15 from chromosom...    44   6.9    1
(AC119977) Mus musculus chromosome 5, clone RP24-486F14, com...    44   6.9    1
(AC115795) Mus musculus chromosome 5, clone RP23-400O10, com...    44   6.9    1
(AC114461) Rattus norvegicus 1 BAC CH230-14J24 (Children's H...    44   6.9    1
(AC104196) Mus musculus chromosome 5, clone RP24-239K15, com...    44   6.9    1
(AP008136) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.9    1
(FB669748) Sequence 393 from Patent WO2007144105.                  44   6.9    1
(FB571361) Sequence 228 from Patent EP1865317.                     44   6.9    1
(FB571305) Sequence 172 from Patent EP1865317.                     44   6.9    1
(AC091330) Trypanosoma brucei chromosome 3 clone RPCI93-48O8...    44   6.9    1
(AL160237) Human chromosome 14 DNA sequence BAC R-388E23 of ...    44   6.9    1
(AF111168) Homo sapiens serine palmitoyl transferase, subuni...    44   6.9    1
(AC128688) Homo sapiens 3 BAC RP11-757F18 (Roswell Park Canc...    44   6.9    1
(AC097275) Homo sapiens chromosome 16 clone RP11-23O7, compl...    44   6.9    1
(AC016730) Homo sapiens BAC clone RP11-375H3 from 2, complet...    44   6.9    1
(AC006925) Homo sapiens chromosome 17, clone hRPK.81_I_9, co...    44   6.9    1
(AC151401) Dasypus novemcinctus clone VMRC5-223H13, WORKING ...    44   6.9    1
(AC129426) Rattus norvegicus clone CH230-247J10, WORKING DRA...    44   6.9    1
(AC127860) Rattus norvegicus clone CH230-264A9, *** SEQUENCI...    44   6.9    1
(AC117106) Rattus norvegicus clone CH230-92K24, WORKING DRAF...    44   6.9    1
(AC115394) Rattus norvegicus chromosome 18 clone CH230-115H2...    44   6.9    1
(AC110870) Homo sapiens chromosome 3 clone RP11-795F24, WORK...    44   6.9    1
(AC097336) Rattus norvegicus clone CH230-48A20, *** SEQUENCI...    44   6.9    1
(CU915462) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.9    1
(CU694598) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.9    1
(CU672267) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.9    1
(AC094075) Rattus norvegicus clone CH230-131A9, WORKING DRAF...    44   6.9    1
(AC079518) Mus musculus clone RP23-303A11, WORKING DRAFT SEQ...    44   6.9    1
(AC032012) Mus musculus chromosome 11 clone RP23-237M14 map ...    44   6.9    1
(CU468173) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.9    1
(CU074390) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.9    1
(CU024908) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.9    1
(CT956039) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.9    1
(CT027570) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.9    1
(AP010233) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.9    1
(AC219560) Bos taurus clone CH240-330B12, WORKING DRAFT SEQU...    44   6.9    1
(AC219495) Bos taurus clone CH240-332J14, WORKING DRAFT SEQU...    44   6.9    1
(AC192552) Gallus gallus chromosome 3 clone CH261-132D12, **...    44   6.9    1
(AC185099) Bos taurus clone CH240-42M16, WORKING DRAFT SEQUE...    44   6.9    1
(AC180356) Strongylocentrotus purpuratus clone R3-3118H1, WO...    44   6.9    1
(AC179412) Strongylocentrotus purpuratus clone R3-62B20, WOR...    44   6.9    1
(AC177521) Strongylocentrotus purpuratus clone R3-9O12, WORK...    44   6.9    1
(AC176071) Strongylocentrotus purpuratus clone R3-1G01, WORK...    44   6.9    1
(AC171669) Bos taurus clone CH240-269C3, WORKING DRAFT SEQUE...    44   6.9    1
(AC169551) Bos taurus clone CH240-221H17, WORKING DRAFT SEQU...    44   6.9    1
(AC025102) Homo sapiens clone RP11-23O12, WORKING DRAFT SEQU...    44   6.9    1
(AC024964) Homo sapiens chromosome 3 clone RP11-772I20 map 3...    44   6.9    1
(BH048609) RPCI-24-346P14.TJB RPCI-24 Mus musculus genomic c...    44   6.9    1
(ER554702) 1093016298821 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.9    1
(EJ882451) 1093018402403 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.9    1
(EJ474847) 1095403434041 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.9    1
(EJ339328) 1092963504395 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.9    1
(ED346731) AUAC-aab12f11.b1 Ascaris suum whole genome shotgu...    44   6.9    1
(DX959772) CHORI105-8I13.TJ CHORI105.pTARBAC1.3 Trypanosoma ...    44   6.9    1
(CT518409) A BAC library has been constructed from cultivar ...    44   6.9    1
(CL380485) RPCI44_429O1.r RPCI-44 Sus scrofa genomic clone R...    44   6.9    1
(CC490742) CH240_324E15.TARBAC13P2 CHORI-240 Bos taurus geno...    44   6.9    1
(CC194202) CH261-191N24_RM1.1 CH261 Gallus gallus genomic cl...    44   6.9    1
(DY886296) CeleSEQ1897 Cunninghamella elegans pBluescript (E...    44   6.9    1
(DW253087) UI-S-GB1-aag-j-16-0-UI.s1 UI-S-GB1 Euprymna scolo...    44   6.9    1
(DT574188) EST1084828 GH_TMO Gossypium hirsutum cDNA, mRNA s...    44   6.9    1
(DK968894) Papilio xuthus mRNA, clone: PxutEST_ftf09f07, 5' ...    44   6.9    1
(CD769155) AGENCOURT_14717244 NICHD_MM_Hyp1 Mus musculus cDN...    44   6.9    1
(BX552419) Glossina morsitans morsitans (Tseatse fly) EST fr...    44   6.9    1
(AI215495) qh08d01.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    44   6.9    1
(BM350989) MEST271-F12.T3 ISUM5-RN Zea mays cDNA clone MEST2...    44   6.9    1
(GO168633) CAGA42923.fwd CAGA Alvinella pompejana Normalized...    44   6.9    1
(GO168632) CAGA42923.rev CAGA Alvinella pompejana Normalized...    44   6.9    1
(FD981134) RR3GW84TF RR3(NY) Raphanus raphanistrum subsp. ra...    44   6.9    1
(FD976913) RR3GW84JQ RR3(NY) Raphanus raphanistrum subsp. ra...    44   6.9    1
(FD551575) RR3FM44TF RR3(NY) Raphanus raphanistrum subsp. ra...    44   6.9    1
(FC818460) Sr_pAMT7_012a20_T7 S. ratti mixed stage pAMP Stro...    44   6.9    1
(EX767337) RR3C095JQ RR3(NY) Raphanus raphanistrum subsp. ra...    44   6.9    1
(EX763224) RR3C095TF RR3(NY) Raphanus raphanistrum subsp. ra...    44   6.9    1
(EX205151) SGT1301BP2_F02 library_13: tammar wallaby mammary...    44   6.9    1
(EW461984) rnmm31c_p12.y1 nmm Sus scrofa cDNA 5', mRNA seque...    44   6.9    1
(EW054184) rpigcb_13684.y1 cty Sus scrofa cDNA 5', mRNA sequ...    44   6.9    1
(ES809876) UFL_282_35 Cotton fiber 0-10 day post anthesis Go...    44   6.9    1
(CP000673) Clostridium kluyveri DSM 555, complete genome.          44   6.9    1
(AP009049) Clostridium kluyveri NBRC 12016 DNA, complete gen...    44   6.9    1
(EL505731) H07_2089_302.AB1 Blood stage Plasmodium falciparu...    36   7.1    2
(AL389914) Human chromosome 14 DNA sequence BAC C-2307P3 of ...    36   7.1    4
(BY685132) Mus musculus stroma cell cDNA, RIKEN full-length ...    36   7.3    2
(AC138108) Mus musculus BAC clone RP24-497M9 from chromosome...    38   7.6    2
(BM276302) PfESToaa81a11.y1 Plasmodium falciparum 3D7 gameto...    36   7.6    2
(AC093699) Homo sapiens BAC clone RP11-810C20 from 4, comple...    38   7.6    2
(CO874582) BovGen_02907 normal cattle brain Bos taurus cDNA ...    36   7.9    2
(CO871689) BovGen_00014 normal cattle brain Bos taurus cDNA ...    36   7.9    2
(AX346956) Sequence 2027 from Patent WO0200928.                    36   8.1    2
(AC132864) Homo sapiens chromosome 17 clone RP11-60C11 map 1...    38   8.2    3
(CF930655) CF--04-R-K22 Bos taurus CF-24-HW cDNA library Bos...    36   8.3    2
(AC156459) Mus musculus BAC clone RP23-269A9 from chromosome...    42   8.3    3
(AC158517) Mus musculus BAC clone RP24-114B19 from chromosom...    36   8.4    4
(AC127560) Mus musculus BAC clone RP24-267I18 from chromosom...    38   8.4    5
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    36   8.4    5
(EV753075) LB03552.C21_B04 GC_BGC-35 Bos taurus cDNA clone I...    36   8.5    2
(AC123661) Mus musculus chromosome 5, clone RP23-211E12, com...    38   8.9    5
(AC190099) Rhinolophus ferrumequinum clone VMRC7-389M18, WOR...    32   8.9    5
(BE484469) 171097 BARC 5BOV Bos taurus cDNA 5', mRNA sequence.     36   9.2    2
(AC138613) Mus musculus BAC clone RP24-105J12 from chromosom...    38   9.2    2
(AC233322) Gorilla gorilla gorilla clone CH255-478D18, WORKI...    38   9.3    2
(AC016136) Homo sapiens 12 BAC RP11-1036M20 (Roswell Park Ca...    34   9.4    4
(AC109135) Homo sapiens chromosome 1 clone RP11-240C17, comp...    42   9.4    2
(EL505707) H06_2089_1.AB1 Blood stage Plasmodium falciparum ...    36   9.5    2
(AC147989) Mus musculus BAC clone RP24-468I14 from 18, compl...    40   9.6    3
(AC013326) Homo sapiens chromosome 2 clone RP11-418K3 map 2,...    38   9.6    2
(AC137445) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    40   9.8    2
(CU462970) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   9.8    4
(DY209690) 001028BUTA006621HT BUTA Bos taurus cDNA 5', mRNA ...    36   9.9    2
(AC122182) Mus musculus BAC clone RP23-12G9 from 1, complete...    38   9.9    5
(AC022542) Homo sapiens chromosome 10 clone RP11-537G20, com...    40   9.9    2

>(AU074723) Dictyostelium discoideum slug cDNA, clone SSL670.
          Length = 240

 Score =  476 bits (240), Expect = e-130
 Identities = 240/240 (100%)
 Strand = Plus / Plus


Query: 1   attgataaaagagatgatgatatctctaaattacaacaaaaacaaaaacaagatcaaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attgataaaagagatgatgatatctctaaattacaacaaaaacaaaaacaagatcaaacg 60


Query: 61  gaaattttcgaattgaaaaagaacctccagattagaaataaagaaaatagatcttttaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaattttcgaattgaaaaagaacctccagattagaaataaagaaaatagatcttttaac 120


Query: 121 aattttgtaaattcattaaaaccatcacctgcaacttatcatcaaactaaaattgatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattttgtaaattcattaaaaccatcacctgcaacttatcatcaaactaaaattgatgaa 180


Query: 181 ttaaaagtaactgaagtaccaatgttactacaagaatataaacaaattattaatcaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttaaaagtaactgaagtaccaatgttactacaagaatataaacaaattattaatcaactt 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 749,715,468
Number of extensions: 51814904
Number of successful extensions: 5563672
Number of sequences better than 10.0: 230
Length of query: 678
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 654
Effective length of database: 99,340,224,878
Effective search space: 64968507070212
Effective search space used: 64968507070212
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01951-1 (Contig-U01951-1Q) /CSM_Contig/Contig-U01951-1Q.Seq.d
         (678 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE000783_75(AE000783|pid:none) Borrelia burgdorferi B31, complet...    35   2.1
CP001205_71(CP001205|pid:none) Borrelia burgdorferi ZS7, complet...    35   2.1
(Q26486) RecName: Full=46 kDa FK506-binding nuclear protein;    ...    35   2.7
CP000962_1942(CP000962|pid:none) Clostridium botulinum A3 str. L...    33   6.0
CP000013_73(CP000013|pid:none) Borrelia garinii PBi, complete ge...    33   6.1
AE014187_468(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.1
AE014187_300(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.1
(O61308) RecName: Full=227 kDa spindle- and centromere-associate...    33   7.9
CP000413_458(CP000413|pid:none) Lactobacillus gasseri ATCC 33323...    33   7.9
AL844508_114(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    33   7.9

>AE000783_75(AE000783|pid:none) Borrelia burgdorferi B31, complete
           genome.  &C70109(C70109)
          Length = 469

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
 Frame = +1

Query: 7   KRDDDISKLQQ----KQKQD-QTEIFELKKNLQIRNKENRSFNNFVNSLKPSPATY---- 159
           K++ D  KLQ     K+K + +T+I ELKKN+Q  N + + F  + N+LK     Y
Sbjct: 91  KKEMDKKKLQNIITAKEKHNTKTKIDELKKNIQNINNKQKKFAEYFNNLKKLKVKYKKIE 150

Query: 160 HQTKIDEL 183
            QT I  L
Sbjct: 151 EQTNISNL 158

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 861,957,136
Number of extensions: 15095632
Number of successful extensions: 43190
Number of sequences better than 10.0: 10
Number of HSP's gapped: 43168
Number of HSP's successfully gapped: 10
Length of query: 226
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 102
Effective length of database: 649,847,548
Effective search space: 66284449896
Effective search space used: 66284449896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.93  gvh: 0.40  alm: 0.47  top: 0.47  tms: 0.00  mit: 0.53  mip: 0.11
 nuc: 1.24  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U01951-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0