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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12496-1
Contig ID Contig-U12496-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12496-1 (Contig-U12496-1Q) /CSM_Contig/Contig-U12496-1Q.Seq.d
CTGTTGGCCTACTGGNAACAACAGCAACAACAACAACAACAGCAACAACA
ACCACAATTTGAATTATTTAGAAACAATAATAATAGTAGTAATAATAATA
ATAATAATAGTAGTAATAATAATAGTTTACTTAAATCAGTTAATAGTGGA
CCATCAGATATTATAGAGGATGAACATTATTTTGAAGTAACATTTGATAG
TAATGGTAATCCAACTGGTAAGAATCAAATACCAATTTTAGAGATTAAAT
CAATAACAGATAATAATAATAATGGTAATAGCAATAGTAATAATGGTTTT
GAAGAAGTGTTGGGACCAATTAGTGATATTGAACATGGTATAAATGTAAA
TAGTGAATCTGGTTTCACATTATTAGCATCAACATTATTATTAAGTAAAA
GATTTTATAGAGATGATGAAATTCATACTTTATTTTTATTACCAGATGCA
TCAACAAACAATTCAATACTCTTACAAGAGGAACCTTCAAATACCAATAG
CGTTGGTAATCCAACTGGTAGCACTGGTAAATTACCATTGACACCACCAA
GAAATAGATCATTAGGTCAAATGAATGTTCAATCNNNNNNNNN-------
---NNNNNNNNNNCAACAACAACAACGGCAACAACAACAACAACAACGAC
AACANCAACAACAACAACAACAACAACAACAACAACAACAACCNCAATTT
CATCAAGNNCAACAAAACAAAAACCATCCATCATCAACATTTTCACAAGA
ACTTGNTCCAGAATTTATTAAATATTTAANACATTTATATGNTCAAGATA
NACATAGATTTAGAGGNTNTGANGAAAAACNTTTTAAATCNTTAAATTTA
GANATTCAAGGAATATTTAATAGGACAAATNCAAAATNTTCATCATCNAA
TTTAC
Gap gap included
Contig length 895
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 2
Link to clone list U12496
List of clone(s) 

est1=VHI604F,1,584
est2=VHI604Z,585,877
Translated Amino Acid sequence 
LLAYWXQQQQQQQQQQQPQFELFRNNNNSSNNNNNNSSNNNSLLKSVNSGPSDIIEDEHY
FEVTFDSNGNPTGKNQIPILEIKSITDNNNNGNSNSNNGFEEVLGPISDIEHGINVNSES
GFTLLASTLLLSKRFYRDDEIHTLFLLPDASTNNSILLQEEPSNTNSVGNPTGSTGKLPL
TPPRNRSLGQMNVQSXX---

---XXXQQQQRQQQQQQRQXQQQQQQQQQQQQPQFHQXQQNKNHPSSTFSQELXPEFIKY
LXHLYXQDXHRFRGXXEKXFKSLNLXIQGIFNRTNXKXSSSNL
Translated Amino Acid sequence (All Frames) 
Frame A:
LLAYWXQQQQQQQQQQQPQFELFRNNNNSSNNNNNNSSNNNSLLKSVNSGPSDIIEDEHY
FEVTFDSNGNPTGKNQIPILEIKSITDNNNNGNSNSNNGFEEVLGPISDIEHGINVNSES
GFTLLASTLLLSKRFYRDDEIHTLFLLPDASTNNSILLQEEPSNTNSVGNPTGSTGKLPL
TPPRNRSLGQMNVQSXX---

---xxxxttttattttttttxttttttttttttxissxxtkqkpsiiniftrtxsriy*i
fxtfixsrxt*i*rx*xktf*ixkfrxsrni**dkxkxfiixf

Frame B:
cwptgnnsnnnnnsnnnhnlnyletiiivviiiiiivviiivylnqlivdhqil*rmnii
lk*hlivmviqlvrikyqf*rlnq*qiiiimviaivimvlkkcwdqlvilnmv*m*ivnl
vshy*hqhyy*vkdfiemmkfilyfyyqmhqqtiqysykrnlqipialviqlvalvnyh*
hhqeidh*vk*mfnxxx---

---XXXQQQQRQQQQQQRQXQQQQQQQQQQQQPQFHQXQQNKNHPSSTFSQELXPEFIKY
LXHLYXQDXHRFRGXXEKXFKSLNLXIQGIFNRTNXKXSSSNL

Frame C:
vgllxttatttttatttti*ii*kq****************ft*is**wtiryyrg*tlf
*sni***w*snw*esntnfrd*innr****w**q***wf*rsvgtn**y*twykck**iw
fhiisiniiik*kil*r**nsyfifitrcinkqfntltrgtfkyq*rw*snw*hw*itid
ttkk*iirsnecsixxx---

---xxxnnnngnnnnnndnxnnnnnnnnnnnnxnfikxnktktihhqhfhknlxqnllni
*xiymxkixidlexxxknxlnx*i*xfkeyligqxqnxhhxiy
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12496-1 (Contig-U12496-1Q)
/CSM_Contig/Contig-U12496-1Q.Seq.d
         (905 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12496-1 (Contig-U12496-1Q) /CSM_Contig/Conti...   575  e-164
Contig-U00742-1 (Contig-U00742-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U13924-1 (Contig-U13924-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U13551-1 (Contig-U13551-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U13388-1 (Contig-U13388-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U12039-1 (Contig-U12039-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U12013-1 (Contig-U12013-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U10542-1 (Contig-U10542-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U10400-1 (Contig-U10400-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U09523-1 (Contig-U09523-1Q) /CSM_Contig/Conti...    34  0.25

>Contig-U12496-1 (Contig-U12496-1Q) /CSM_Contig/Contig-U12496-1Q.Seq.d
          Length = 905

 Score =  575 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 295 ggttttgaagaagtgttgggaccaattagtgatattgaacatggtataaatgtaaatagt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ggttttgaagaagtgttgggaccaattagtgatattgaacatggtataaatgtaaatagt 354

                                                                       
Query: 355 gaatctggtttcacattattagcatcaacattattattaagtaaaagattttatagagat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gaatctggtttcacattattagcatcaacattattattaagtaaaagattttatagagat 414

                                                                       
Query: 415 gatgaaattcatactttatttttattaccagatgcatcaacaaacaattcaatactctta 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gatgaaattcatactttatttttattaccagatgcatcaacaaacaattcaatactctta 474

                                                                       
Query: 475 caagaggaaccttcaaataccaatagcgttggtaatccaactggtagcactggtaaatta 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 caagaggaaccttcaaataccaatagcgttggtaatccaactggtagcactggtaaatta 534

                                                             
Query: 535 ccattgacaccaccaagaaatagatcattaggtcaaatgaatgttcaatc 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccattgacaccaccaagaaatagatcattaggtcaaatgaatgttcaatc 584


 Score =  289 bits (146), Expect = 3e-78
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                       
Query: 721 aaaccatccatcatcaacattttcacaagaacttgntccagaatttattaaatatttaan 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aaaccatccatcatcaacattttcacaagaacttgntccagaatttattaaatatttaan 780

                                                                       
Query: 781 acatttatatgntcaagatanacatagatttagaggntntgangaaaaacnttttaaatc 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 acatttatatgntcaagatanacatagatttagaggntntgangaaaaacnttttaaatc 840

                                                                       
Query: 841 nttaaatttaganattcaaggaatatttaataggacaaatncaaaatnttcatcatcnaa 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 nttaaatttaganattcaaggaatatttaataggacaaatncaaaatnttcatcatcnaa 900

                
Query: 901 tttac 905
           |||||
Sbjct: 901 tttac 905


 Score =  252 bits (127), Expect = 6e-67
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                       
Query: 125 gtttacttaaatcagttaatagtggaccatcagatattatagaggatgaacattattttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtttacttaaatcagttaatagtggaccatcagatattatagaggatgaacattattttg 184

                                                                       
Query: 185 aagtaacatttgatagtaatggtaatccaactggtaagaatcaaataccaattttagaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aagtaacatttgatagtaatggtaatccaactggtaagaatcaaataccaattttagaga 244

                  
Query: 245 ttaaatc 251
           |||||||
Sbjct: 245 ttaaatc 251


 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 53 cacaatttgaattatttagaaac 75
          |||||||||||||||||||||||
Sbjct: 53 cacaatttgaattatttagaaac 75


 Score = 34.2 bits (17), Expect = 0.25
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 204 tggtaatccaactggta 220
           |||||||||||||||||
Sbjct: 504 tggtaatccaactggta 520


 Score = 34.2 bits (17), Expect = 0.25
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 504 tggtaatccaactggta 520
           |||||||||||||||||
Sbjct: 204 tggtaatccaactggta 220


>Contig-U00742-1 (Contig-U00742-1Q) /CSM_Contig/Contig-U00742-1Q.Seq.d
          Length = 1420

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 181 tttgaagtaacatttgata 199
           |||||||||||||||||||
Sbjct: 135 tttgaagtaacatttgata 117


>Contig-U13924-1 (Contig-U13924-1Q) /CSM_Contig/Contig-U13924-1Q.Seq.d
          Length = 1403

 Score = 36.2 bits (18), Expect = 0.064
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 762  aatttattaaatatttaa 779
            ||||||||||||||||||
Sbjct: 1306 aatttattaaatatttaa 1323


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,162
Number of Sequences: 6905
Number of extensions: 12162
Number of successful extensions: 1671
Number of sequences better than 10.0: 105
length of query: 905
length of database: 5,674,871
effective HSP length: 16
effective length of query: 889
effective length of database: 5,564,391
effective search space: 4946743599
effective search space used: 4946743599
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 1
Homology vs DNA 
Query= Contig-U12496-1 (Contig-U12496-1Q) /CSM_Contig/Contig-U12496-1Q.Seq.d
         (905 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...   575   0.0    4
(BJ423103) Dictyostelium discoideum cDNA clone:ddv48g02, 5' ...   575   0.0    4
(BJ441852) Dictyostelium discoideum cDNA clone:ddv48g02, 3' ...   250   8e-62  1
(AZ529929) ENTCG78TR Entamoeba histolytica Sheared DNA Entam...    48   0.58   1
(DE947865) Macropus eugenii DNA, BAC clone: MEB1-144M10_R, 3...    48   0.58   1
(AC188435) Pan troglodytes BAC clone CH251-682L9 from chromo...    34   1.2    2
(AC025896) Homo sapiens clone RP11-618A7, WORKING DRAFT SEQU...    34   1.2    2
(AC006204) Homo sapiens PAC clone RP5-1102B4 from 7, complet...    34   1.2    2
(CP000746) Actinobacillus succinogenes 130Z, complete genome.      46   2.3    1
(CS609767) Sequence 212 from Patent EP1795597.                     40   4.0    2
(BD186860) Nucleic acids isolated from neuroblastoma.              40   4.0    2
(AF003528) Homo sapiens X-linked anhidroitic ectodermal dysp...    32   4.5    2
(CJ421829) Molgula tectiformis cDNA, larva clone:mtlv008h02,...    32   5.8    2
(DX108208) MUGQ_CH252P011A23T7_GL260_096 CHORI-252 Vervet Mo...    32   5.9    2
(CR847566) Zebrafish DNA sequence from clone DKEY-202P8 in l...    44   9.1    1
(AC137010) Rattus norvegicus clone CH230-unknown, WORKING DR...    44   9.1    1
(AC136678) Rattus norvegicus clone CH230-16I19, WORKING DRAF...    44   9.1    1
(AC134162) Rattus norvegicus clone CH230-103B9, *** SEQUENCI...    44   9.1    1
(AC132978) Rattus norvegicus clone CH230-14H14, *** SEQUENCI...    44   9.1    1
(AC096079) Rattus norvegicus clone CH230-33I23, *** SEQUENCI...    44   9.1    1
(CU633212) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.1    1
(CT841550) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.1    1
(AC201031) Strongylocentrotus purpuratus clone R3-12I9, WORK...    44   9.1    1
(AC201024) Strongylocentrotus purpuratus clone R3-12I10, WOR...    44   9.1    1
(AC200973) Strongylocentrotus purpuratus clone R3-112M5, WOR...    44   9.1    1
(ED741708) GM_WBb0103K19.r GM_WBb Glycine max genomic clone ...    44   9.1    1
(CZ763887) OC__Ba0118I16.r OC__Ba Oryza coarctata genomic cl...    44   9.1    1
(CW675380) OP__Ba0075B18.f OP__Ba Oryza punctata genomic clo...    44   9.1    1
(CT033950) Sus scrofa genomic clone CH242-12E8, genomic surv...    44   9.1    1
(CL332759) CH242_12E8.r CHORI-242 Sus scrofa genomic clone C...    44   9.1    1
(FD687842) CBHY1281.fwd CBHY Mycosphaerella fijiensis MfEST5...    44   9.1    1
(FD687633) CBHY1157.rev CBHY Mycosphaerella fijiensis MfEST5...    44   9.1    1
(FD687295) CBHX6118.fwd CBHX Mycosphaerella fijiensis MfEST4...    44   9.1    1
(FD682112) CBHX1985.rev CBHX Mycosphaerella fijiensis MfEST4...    44   9.1    1
(FD677743) CBHW1795.rev CBHW Mycosphaerella fijiensis MfEST4...    44   9.1    1
(FD666344) CBHT1283.rev CBHT Mycosphaerella fijiensis MfEST3...    44   9.1    1

>(AC115598) Dictyostelium discoideum chromosome 2 map 581427-735498
            strain AX4, complete sequence.
          Length = 154071

 Score =  575 bits (290), Expect(4) = 0.0
 Identities = 290/290 (100%)
 Strand = Plus / Minus


Query: 295  ggttttgaagaagtgttgggaccaattagtgatattgaacatggtataaatgtaaatagt 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3750 ggttttgaagaagtgttgggaccaattagtgatattgaacatggtataaatgtaaatagt 3691


Query: 355  gaatctggtttcacattattagcatcaacattattattaagtaaaagattttatagagat 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3690 gaatctggtttcacattattagcatcaacattattattaagtaaaagattttatagagat 3631


Query: 415  gatgaaattcatactttatttttattaccagatgcatcaacaaacaattcaatactctta 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3630 gatgaaattcatactttatttttattaccagatgcatcaacaaacaattcaatactctta 3571


Query: 475  caagaggaaccttcaaataccaatagcgttggtaatccaactggtagcactggtaaatta 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3570 caagaggaaccttcaaataccaatagcgttggtaatccaactggtagcactggtaaatta 3511


Query: 535  ccattgacaccaccaagaaatagatcattaggtcaaatgaatgttcaatc 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 ccattgacaccaccaagaaatagatcattaggtcaaatgaatgttcaatc 3461

 Score =  242 bits (122), Expect(4) = 0.0
 Identities = 151/165 (91%)
 Strand = Plus / Minus


Query: 741  tttcacaagaacttgntccagaatttattaaatatttaanacatttatatgntcaagata 800
            ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 1510 tttcacaagaacttgttccagaatttattaaatatttaatacatttatatgttcaagata 1451


Query: 801  nacatagatttagaggntntgangaaaaacnttttaaatcnttaaatttaganattcaag 860
             ||||||||||||||| | ||| ||||||| ||||||||| ||||||||||| |||||||
Sbjct: 1450 tacatagatttagaggttctgatgaaaaactttttaaatcattaaatttagatattcaag 1391


Query: 861  gaatatttaataggacaaatncaaaatnttcatcatcnaatttac 905
            ||||||||||||| |||||| |||||| ||||||||| |||||||
Sbjct: 1390 gaatatttaatagtacaaatacaaaatcttcatcatcaaatttac 1346

 Score =  159 bits (80), Expect(4) = 0.0
 Identities = 80/80 (100%)
 Strand = Plus / Minus


Query: 148  ggaccatcagatattatagaggatgaacattattttgaagtaacatttgatagtaatggt 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3897 ggaccatcagatattatagaggatgaacattattttgaagtaacatttgatagtaatggt 3838


Query: 208  aatccaactggtaagaatca 227
            ||||||||||||||||||||
Sbjct: 3837 aatccaactggtaagaatca 3818

 Score = 36.2 bits (18), Expect(4) = 0.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus


Query: 58   tttgaattatttagaaac 75
            ||||||||||||||||||
Sbjct: 3987 tttgaattatttagaaac 3970

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 592,930,222
Number of extensions: 37132666
Number of successful extensions: 2970283
Number of sequences better than 10.0: 36
Length of query: 905
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 881
Effective length of database: 97,308,875,965
Effective search space: 85729119725165
Effective search space used: 85729119725165
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12496-1 (Contig-U12496-1Q) /CSM_Contig/Contig-U12496-1Q.Seq.d
         (905 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_1(AC115598|pid:none) Dictyostelium discoideum chromosom...   281   3e-74

>AC115598_1(AC115598|pid:none) Dictyostelium discoideum chromosome 2
           map 581427-735498 strain AX4, complete sequence.
          Length = 1407

 Score =  281 bits (718), Expect = 3e-74
 Identities = 146/176 (82%), Positives = 146/176 (82%)
 Frame = +1

Query: 58  FELFRXXXXXXXXXXXXXXXXXXLLKSVNSGPSDIIEDEHYFEVTFDSNGNPTGKNQIPI 237
           FELFR                  LLKSVNSGPSDIIEDEHYFEVTFDSNGNPTGKNQIPI
Sbjct: 259 FELFRNNNNSSNNNNNNSSNNNSLLKSVNSGPSDIIEDEHYFEVTFDSNGNPTGKNQIPI 318

Query: 238 LEIKSITDXXXXXXXXXXXXFEEVLGPISDIEHGINVNSESGFTLLASTLLLSKRFYRDD 417
           LEIKSITD            FEEVLGPISDIEHGINVNSESGFTLLASTLLLSKRFYRDD
Sbjct: 319 LEIKSITDNNNNGNSNSNNGFEEVLGPISDIEHGINVNSESGFTLLASTLLLSKRFYRDD 378

Query: 418 EIHTLFLLPDASTNNSILLQEEPSNTNSVGNPTGSTGKLPLTPPRNRSLGQMNVQS 585
           EIHTLFLLPDASTNNSILLQEEPSNTNSVGNPTGSTGKLPLTPPRNRSLGQMNVQS
Sbjct: 379 EIHTLFLLPDASTNNSILLQEEPSNTNSVGNPTGSTGKLPLTPPRNRSLGQMNVQS 434

 Score =  106 bits (264), Expect = 1e-21
 Identities = 52/63 (82%), Positives = 52/63 (82%)
 Frame = +2

Query: 716  NKNHPSSTFSQELXPEFIKYLXHLYXQDXHRFRGXXEKXFKSLNLXIQGIFNRTNXKXSS 895
            NKNHPSSTFSQEL PEFIKYL HLY QD HRFRG  EK FKSLNL IQGIFN TN K SS
Sbjct: 1028 NKNHPSSTFSQELVPEFIKYLIHLYVQDIHRFRGSDEKLFKSLNLDIQGIFNSTNTKSSS 1087

Query: 896  SNL 904
            SNL
Sbjct: 1088 SNL 1090

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 852,836,933
Number of extensions: 15520940
Number of successful extensions: 33581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33565
Number of HSP's successfully gapped: 2
Length of query: 301
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 173
Effective length of database: 636,901,312
Effective search space: 110183926976
Effective search space used: 110183926976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.76  gvh: 0.31  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U12496-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0