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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12484-1
Contig ID Contig-U12484-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12484-1 (Contig-U12484-1Q) /CSM_Contig/Contig-U12484-1Q.Seq.d
GATTTGCTCAGTTTCTTCAATATTGGTTCATATCATTGCTGAAGAATTCA
CATCAAGACAATTGGAGATTGGTGAAGATTCAAAGAGTAGATTTAAATTG
AATGAACATAAACCATTGCCATACAAAAATGAAGCAGAATCAATTCAAAG
ACTATGGGAGTCACATCATTTCTTGGGTTACATTTTCTCAAAAGTGGCCA
TATTGGATAAATTCTTACCATTGTTATCATTGTTGGTTGATAATCATAGT
ACTTTTAAAGTATCGGTTTTCGAAGAGTATTTAAAGAATTTCATTACCAT
TTTCGCTCCAAGGGATAGAGCATCGTCACGTATTATGCAGTTTTTGGGTA
TTGTTTACATTGAAAATATAAAGATATCATTACCATTTGCAACGGGTTAT
TCACGTCATAATGTAATCGAGTTAATACTTCGTAGTCATAAAACCATCTA
TGTTCCATTGCTTTTACCATTTTATCAATCATCAAGTTCAAAAGATATTA
CCAAGGAGGTTATGTTACAAACTGATGTACCAGCAATACCAAAGCTATTG
AAAGAACCATCAGTAGTAAGATATTTTTGTTCTCAAAGTGATAAATTCAA
ATTACTCTTTGAATATGCCAGAGAGTTACATAAATTCACATCACTNNNNN
NNNN----------GTTCATTTGATTCAGTTTTAATGGGTGTTAGTGAAA
ATGATATTTGTGAAACCTATATCAATGAATTGGCCGAACCAACTGGTAGA
GCATTGGAATTGAAAGATCAAGATAATTGGAAATACTATGACCCTTATTA
TCCACATTTCTCTCTAACCTATCGTAATGCAATTCAAAATGGTTCAAAGA
AAAGATTTAAAAGATATATGGAATCAAAGAAAATCCCATCCGAATCAAAT
CCATTACCACCAGTCTTAGAGGAGTTACCAACAGAGTTATTGGGATTAAC
TAAAATTTTCAATGATCAAAACTTTAATTGAAATCATTTTTTGTATATTG
GCCGATTGTTTATATCCAACATTTATTGGTTATGATAATAGTATTGAACT
TCAACCAATTCTTAAAATGATCATTTCAAATCCACAAATCATTTTAAATG
ATTTCTTTTATCTTTTAGTATTATCAATTAAATCATTCAAAGAGATTACT
TTACCAATTTTAACAAAATCGGAAATAGATGAAATTGTAAATTCTGTAAT
TAATTTCTTTGATCATGAAAAATTAATTAAAACTCAAATTTTAATTAATA
ATTCAACTGATCAAAATGAAAAAGAAAAGTTATTAATAGAAAATCAAGAT
AAAATTTTAGAAAATTTAACAGATAATATTAAAATTAATTATGATGAAAC
TACTACTACTACTACTACAACCTCAATGAAGAAAAAGAAAATGTTAAGAT
AAAGAAATATTGATTCATTAAAAGAA
Gap gap included
Contig length 1416
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1084036
End point 1085412
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 5
Link to clone list U12484
List of clone(s) 

est1=VHH360F,1,645
est2=VHA812Z,646,1272
est3=VHP439Z,654,1264
est4=VHP839Z,794,1265
est5=VHH360Z,802,1408
Translated Amino Acid sequence 
ICSVSSILVHIIAEEFTSRQLEIGEDSKSRFKLNEHKPLPYKNEAESIQRLWESHHFLGY
IFSKVAILDKFLPLLSLLVDNHSTFKVSVFEEYLKNFITIFAPRDRASSRIMQFLGIVYI
ENIKISLPFATGYSRHNVIELILRSHKTIYVPLLLPFYQSSSSKDITKEVMLQTDVPAIP
KLLKEPSVVRYFCSQSDKFKLLFEYARELHKFTSLXX---

---SFDSVLMGVSENDICETYINELAEPTGRALELKDQDNWKYYDPYYPHFSLTYRNAIQ
NGSKKRFKRYMESKKIPSESNPLPPVLEELPTELLGLTKIFNDQNFN*nhflyigrlfis
niywl***y*tstns*ndhfkstnhfk*fllsfsiin*iiqrdyftnfnkignr*nckfc
n*fl*s*kin*nsnfn**fn*sk*krkvinrksr*nfrkfnr*y*n*l**nyyyyyynln
eekenvkikky*fikr
Translated Amino Acid sequence (All Frames) 
Frame A:
dllsffnigsyhc*rihiktigdw*rfke*i*ie*t*tiaiqk*srinsktmgvtsflgl
hflksghig*iltiviivg**s*yf*sigfrrvfkefhyhfrskg*sivtyyavfgyclh
*kykdiiticnglfts*cnrvnts*s*nhlcsiaftilsiikfkryyqggyvtn*ctsnt
kaiertisskiflfsk**iqitl*icqrvt*ihitxxx---

---vhliqf*wvlvkmifvkpismnwpnqlvehwn*kikiigntmtliihisl*pivmqf
kmvqrkdlkdiwnqrkshpnqihyhqs*rsyqqsywd*lkfsmiktlieiifciladcly
ptfigydnsielqpilkmiisnpqiilndffyllvlsiksfkeitlpiltkseideivns
vinffdhekliktqilinnstdqnekekllienqdkilenltdnikinydetttttttts
mkkkkmlr*rnidslke

Frame B:
ICSVSSILVHIIAEEFTSRQLEIGEDSKSRFKLNEHKPLPYKNEAESIQRLWESHHFLGY
IFSKVAILDKFLPLLSLLVDNHSTFKVSVFEEYLKNFITIFAPRDRASSRIMQFLGIVYI
ENIKISLPFATGYSRHNVIELILRSHKTIYVPLLLPFYQSSSSKDITKEVMLQTDVPAIP
KLLKEPSVVRYFCSQSDKFKLLFEYARELHKFTSLXX---

---fi*fsfngc**k*yl*nlyq*igrtnw*sigiersr*leil*pllstflsnls*cns
kwfkeki*kiygikenpiriksittslrgvtnrvigin*nfq*skl*lksffvywpivyi
qhllvmiivlnfnqflk*sfqihksf*misfif*yyqlnhskrllyqf*qnrk*mkl*il
*lislimkn*lklkf*liiqlikmkkksy**kikikf*ki*qiilklimmkllllllqpq
*rkrkc*dkeilih*k

Frame C:
faqflqywfisllknshqdnwrlvkiqrvdln*mninhchtkmkqnqfkdygshiiswvt
fsqkwpywinsyhcyhcwliiivllkyrfsksi*rislpfslqgiehrhvlcsfwvlftl
ki*ryhyhlqrvihvim*ss*yfvvikpsmfhcfyhfinhqvqkilprrlcyklmyqqyq
sy*knhq**difvlkvinsnyslnmpesyinshhxxx---

---SFDSVLMGVSENDICETYINELAEPTGRALELKDQDNWKYYDPYYPHFSLTYRNAIQ
NGSKKRFKRYMESKKIPSESNPLPPVLEELPTELLGLTKIFNDQNFN*nhflyigrlfis
niywl***y*tstns*ndhfkstnhfk*fllsfsiin*iiqrdyftnfnkignr*nckfc
n*fl*s*kin*nsnfn**fn*sk*krkvinrksr*nfrkfnr*y*n*l**nyyyyyynln
eekenvkikky*fikr
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12484-1 (Contig-U12484-1Q)
/CSM_Contig/Contig-U12484-1Q.Seq.d
         (1426 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12484-1 (Contig-U12484-1Q) /CSM_Contig/Conti...  1279  0.0
Contig-U14137-1 (Contig-U14137-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10362-1 (Contig-U10362-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U06322-1 (Contig-U06322-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12645-1 (Contig-U12645-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U06395-1 (Contig-U06395-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U03801-1 (Contig-U03801-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U12580-1 (Contig-U12580-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U12400-1 (Contig-U12400-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U11848-1 (Contig-U11848-1Q) /CSM_Contig/Conti...    36  0.10

>Contig-U12484-1 (Contig-U12484-1Q) /CSM_Contig/Contig-U12484-1Q.Seq.d
          Length = 1426

 Score = 1279 bits (645), Expect = 0.0
 Identities = 645/645 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatttgctcagtttcttcaatattggttcatatcattgctgaagaattcacatcaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatttgctcagtttcttcaatattggttcatatcattgctgaagaattcacatcaagaca 60

                                                                       
Query: 61  attggagattggtgaagattcaaagagtagatttaaattgaatgaacataaaccattgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attggagattggtgaagattcaaagagtagatttaaattgaatgaacataaaccattgcc 120

                                                                       
Query: 121 atacaaaaatgaagcagaatcaattcaaagactatgggagtcacatcatttcttgggtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacaaaaatgaagcagaatcaattcaaagactatgggagtcacatcatttcttgggtta 180

                                                                       
Query: 181 cattttctcaaaagtggccatattggataaattcttaccattgttatcattgttggttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cattttctcaaaagtggccatattggataaattcttaccattgttatcattgttggttga 240

                                                                       
Query: 241 taatcatagtacttttaaagtatcggttttcgaagagtatttaaagaatttcattaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taatcatagtacttttaaagtatcggttttcgaagagtatttaaagaatttcattaccat 300

                                                                       
Query: 301 tttcgctccaagggatagagcatcgtcacgtattatgcagtttttgggtattgtttacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcgctccaagggatagagcatcgtcacgtattatgcagtttttgggtattgtttacat 360

                                                                       
Query: 361 tgaaaatataaagatatcattaccatttgcaacgggttattcacgtcataatgtaatcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaaaatataaagatatcattaccatttgcaacgggttattcacgtcataatgtaatcga 420

                                                                       
Query: 421 gttaatacttcgtagtcataaaaccatctatgttccattgcttttaccattttatcaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttaatacttcgtagtcataaaaccatctatgttccattgcttttaccattttatcaatc 480

                                                                       
Query: 481 atcaagttcaaaagatattaccaaggaggttatgttacaaactgatgtaccagcaatacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atcaagttcaaaagatattaccaaggaggttatgttacaaactgatgtaccagcaatacc 540

                                                                       
Query: 541 aaagctattgaaagaaccatcagtagtaagatatttttgttctcaaagtgataaattcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaagctattgaaagaaccatcagtagtaagatatttttgttctcaaagtgataaattcaa 600

                                                        
Query: 601 attactctttgaatatgccagagagttacataaattcacatcact 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 attactctttgaatatgccagagagttacataaattcacatcact 645


 Score = 1094 bits (552), Expect = 0.0
 Identities = 552/552 (100%)
 Strand = Plus / Plus

                                                                        
Query: 665  gttcatttgattcagttttaatgggtgttagtgaaaatgatatttgtgaaacctatatca 724
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  gttcatttgattcagttttaatgggtgttagtgaaaatgatatttgtgaaacctatatca 724

                                                                        
Query: 725  atgaattggccgaaccaactggtagagcattggaattgaaagatcaagataattggaaat 784
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  atgaattggccgaaccaactggtagagcattggaattgaaagatcaagataattggaaat 784

                                                                        
Query: 785  actatgacccttattatccacatttctctctaacctatcgtaatgcaattcaaaatggtt 844
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  actatgacccttattatccacatttctctctaacctatcgtaatgcaattcaaaatggtt 844

                                                                        
Query: 845  caaagaaaagatttaaaagatatatggaatcaaagaaaatcccatccgaatcaaatccat 904
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  caaagaaaagatttaaaagatatatggaatcaaagaaaatcccatccgaatcaaatccat 904

                                                                        
Query: 905  taccaccagtcttagaggagttaccaacagagttattgggattaactaaaattttcaatg 964
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  taccaccagtcttagaggagttaccaacagagttattgggattaactaaaattttcaatg 964

                                                                        
Query: 965  atcaaaactttaattgaaatcattttttgtatattggccgattgtttatatccaacattt 1024
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  atcaaaactttaattgaaatcattttttgtatattggccgattgtttatatccaacattt 1024

                                                                        
Query: 1025 attggttatgataatagtattgaacttcaaccaattcttaaaatgatcatttcaaatcca 1084
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 attggttatgataatagtattgaacttcaaccaattcttaaaatgatcatttcaaatcca 1084

                                                                        
Query: 1085 caaatcattttaaatgatttcttttatcttttagtattatcaattaaatcattcaaagag 1144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 caaatcattttaaatgatttcttttatcttttagtattatcaattaaatcattcaaagag 1144

                                                                        
Query: 1145 attactttaccaattttaacaaaatcggaaatagatgaaattgtaaattctgtaattaat 1204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 attactttaccaattttaacaaaatcggaaatagatgaaattgtaaattctgtaattaat 1204

                        
Query: 1205 ttctttgatcat 1216
            ||||||||||||
Sbjct: 1205 ttctttgatcat 1216


 Score =  139 bits (70), Expect = 9e-33
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1279 gttattaatagaaaatcaagataaaattttagaaaatttaacagataatattaaaattaa 1338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 gttattaatagaaaatcaagataaaattttagaaaatttaacagataatattaaaattaa 1338

                      
Query: 1339 ttatgatgaa 1348
            ||||||||||
Sbjct: 1339 ttatgatgaa 1348


 Score =  115 bits (58), Expect = 1e-25
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1369 aacctcaatgaagaaaaagaaaatgttaagataaagaaatattgattcattaaaagaa 1426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 aacctcaatgaagaaaaagaaaatgttaagataaagaaatattgattcattaaaagaa 1426


>Contig-U14137-1 (Contig-U14137-1Q) /CSM_Contig/Contig-U14137-1Q.Seq.d
          Length = 715

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 892 gaatcaaatccattaccacca 912
           |||||||||||||||||||||
Sbjct: 341 gaatcaaatccattaccacca 361


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 52/64 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1017 caacatttattggttatgataatagtattgaacttcaaccaattcttaaaatgatcattt 1076
            |||| ||| ||||||||||| ||||  ||||| | ||||||||  | |||||| | ||||
Sbjct: 468  caacttttgttggttatgatgatagctttgaaatgcaaccaatcttaaaaatgttaattt 527

                
Query: 1077 caaa 1080
            ||||
Sbjct: 528  caaa 531


>Contig-U10362-1 (Contig-U10362-1Q) /CSM_Contig/Contig-U10362-1Q.Seq.d
          Length = 854

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1080 atccacaaatcattttaaat 1099
            ||||||||||||||||||||
Sbjct: 327  atccacaaatcattttaaat 346


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,816
Number of Sequences: 6905
Number of extensions: 23816
Number of successful extensions: 2932
Number of sequences better than 10.0: 308
length of query: 1426
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1410
effective length of database: 5,564,391
effective search space: 7845791310
effective search space used: 7845791310
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 1
Homology vs DNA 
Query= Contig-U12484-1 (Contig-U12484-1Q) /CSM_Contig/Contig-U12484-1Q.Seq.d
         (1426 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ422333) Dictyostelium discoideum cDNA clone:ddv45h15, 5' ...  1279   0.0    1
(BJ446034) Dictyostelium discoideum cDNA clone:ddv61n10, 3' ...   591   0.0    2
(BJ436740) Dictyostelium discoideum cDNA clone:ddv32h04, 3' ...   591   0.0    2
(BJ441073) Dictyostelium discoideum cDNA clone:ddv45h15, 3' ...   494   0.0    3
(BJ446348) Dictyostelium discoideum cDNA clone:ddv62n10, 3' ...   791   0.0    1
(BJ409355) Dictyostelium discoideum cDNA clone:dds41f04, 3' ...    84   2e-11  1
(BJ435223) Dictyostelium discoideum cDNA clone:ddv26p12, 3' ...    44   4e-04  2
(BJ403546) Dictyostelium discoideum cDNA clone:dds25a17, 3' ...    42   0.013  3
(BJ355893) Dictyostelium discoideum cDNA clone:dda58f16, 3' ...    42   0.013  3
(AC179881) Strongylocentrotus purpuratus clone R3-1006M04, W...    38   0.18   7
(AY228470) Acinetobacter baumannii plasmid pAB02 replicon, p...    50   0.23   1
(CT033825) Zebrafish DNA sequence from clone CH211-173B16 in...    42   0.24   4
(AC182652) Populus trichocarpa clone Pop1-120B14, complete s...    42   0.67   6
(AC180743) Strongylocentrotus purpuratus clone R3-3083B11, W...    36   0.76   8
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    34   0.80   13
(CU607082) Zebrafish DNA sequence from clone CH73-386H18 in ...    48   0.92   1
(AC114181) Rattus norvegicus clone CH230-193O4, WORKING DRAF...    48   0.92   1
(CU927944) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.92   1
(BZ247068) CH230-419F8.TJ CHORI-230 Segment 2 Rattus norvegi...    48   0.92   1
(CU693478) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   1.2    8
(AC188778) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    40   1.5    5
(AC141322) Medicago truncatula clone mth2-8e1, complete sequ...    44   1.5    3
(CT573181) Zebrafish DNA sequence from clone DKEY-174L22 in ...    34   2.7    9
(AC177363) Strongylocentrotus purpuratus clone R3-1032D8, WO...    34   2.7    9
(CR853287) Zebrafish DNA sequence from clone DKEYP-115G4 in ...    36   3.2    7
(BX649366) Zebrafish DNA sequence from clone DKEY-16I5 in li...    46   3.7    1
(BX323878) Zebrafish DNA sequence from clone CH211-57E23 in ...    46   3.7    1
(AC156033) Mus musculus BAC clone RP23-377G8 from chromosome...    46   3.7    1
(CT863710) Medicago truncatula chromosome 5 clone mth2-52h19...    46   3.7    1
(AC156547) Mus musculus chromosome 15 clone RP24-74I19 map 1...    46   3.7    1
(AC100568) Mus musculus clone RP23-155A5, LOW-PASS SEQUENCE ...    46   3.7    1
(DX414313) SOYBF93TH LargeInsertSoybeanGenLibBuild4 Glycine ...    46   3.7    1
(BZ510361) BOMSD83TR BO_2_3_KB Brassica oleracea genomic clo...    46   3.7    1
(AM566616) Paracentrotus lividus EST, clone MPMGp1173P12108Q...    46   3.7    1
(CO108329) GR__Eb0040A14.f GR__Eb Gossypium raimondii cDNA c...    46   3.7    1
(BG850461) 1024028F07.x1 C. reinhardtii CC-1690, normalized,...    46   3.7    1
(AW955428) EST367498 MAGE resequences, MAGD Homo sapiens cDN...    46   3.7    1
(FH080041) CHO_OF3708xo03f1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   4.2    3
(EK198274) 1095460047286 Global-Ocean-Sampling_GS-31-01-01-1...    40   4.4    2
(AC114974) Homo sapiens chromosome 5 clone RP11-484J6, compl...    42   4.8    3
(AC175351) Bos taurus clone CH240-310F4, WORKING DRAFT SEQUE...    40   6.6    6
(CR854953) Zebrafish DNA sequence from clone DKEY-14G24 in l...    32   7.1    2
(AY386371) Yaba monkey tumor virus, complete genome.               34   7.2    5
(AP010421) Lotus japonicus genomic DNA, chromosome 4, clone:...    34   7.3    2
(CU693474) Zebrafish DNA sequence from clone CH1073-323J21 i...    42   8.0    2
(CE163221) tigr-gss-dog-17000326536073 Dog Library Canis lup...    36   8.1    2
(EU294228) Acinetobacter baumannii plasmid pABIR, complete s...    42   8.2    2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    30   8.4    15
(BH607265) BOHAN58TF BOHA Brassica oleracea genomic clone BO...    30   8.4    3
(AG347341) Mus musculus molossinus DNA, clone:MSMg01-142N08....    34   8.9    2
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    34   8.9    9
(AC010795) Arabidopsis thaliana chromosome 1 BAC F16M19 geno...    40   8.9    5
(DX047130) KBrB049A09F KBrB, Brassica rapa BamHI BAC library...    34   9.1    2
(FH548615) CHO_OF4337xn03f1.ab1 CHO_OF4 Nicotiana tabacum ge...    34   9.1    2
(ET174315) MUGQ_CH252P377P18T7_CP711_065 CHORI-252 Vervet Mo...    32   9.1    2
(AC199297) Spermophilus tridecemlineatus clone VMRC20-487N4,...    36   9.3    5
(AL844509) Plasmodium falciparum chromosome 13.                    34   9.4    18
(DU491123) 1098415668497 CHORI-243 Ovis aries genomic clone ...    30   9.8    4

>(BJ422333) Dictyostelium discoideum cDNA clone:ddv45h15, 5' end,
           single read.
          Length = 645

 Score = 1279 bits (645), Expect = 0.0
 Identities = 645/645 (100%)
 Strand = Plus / Plus


Query: 1   gatttgctcagtttcttcaatattggttcatatcattgctgaagaattcacatcaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatttgctcagtttcttcaatattggttcatatcattgctgaagaattcacatcaagaca 60


Query: 61  attggagattggtgaagattcaaagagtagatttaaattgaatgaacataaaccattgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attggagattggtgaagattcaaagagtagatttaaattgaatgaacataaaccattgcc 120


Query: 121 atacaaaaatgaagcagaatcaattcaaagactatgggagtcacatcatttcttgggtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacaaaaatgaagcagaatcaattcaaagactatgggagtcacatcatttcttgggtta 180


Query: 181 cattttctcaaaagtggccatattggataaattcttaccattgttatcattgttggttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cattttctcaaaagtggccatattggataaattcttaccattgttatcattgttggttga 240


Query: 241 taatcatagtacttttaaagtatcggttttcgaagagtatttaaagaatttcattaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taatcatagtacttttaaagtatcggttttcgaagagtatttaaagaatttcattaccat 300


Query: 301 tttcgctccaagggatagagcatcgtcacgtattatgcagtttttgggtattgtttacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcgctccaagggatagagcatcgtcacgtattatgcagtttttgggtattgtttacat 360


Query: 361 tgaaaatataaagatatcattaccatttgcaacgggttattcacgtcataatgtaatcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaaaatataaagatatcattaccatttgcaacgggttattcacgtcataatgtaatcga 420


Query: 421 gttaatacttcgtagtcataaaaccatctatgttccattgcttttaccattttatcaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttaatacttcgtagtcataaaaccatctatgttccattgcttttaccattttatcaatc 480


Query: 481 atcaagttcaaaagatattaccaaggaggttatgttacaaactgatgtaccagcaatacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atcaagttcaaaagatattaccaaggaggttatgttacaaactgatgtaccagcaatacc 540


Query: 541 aaagctattgaaagaaccatcagtagtaagatatttttgttctcaaagtgataaattcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaagctattgaaagaaccatcagtagtaagatatttttgttctcaaagtgataaattcaa 600


Query: 601 attactctttgaatatgccagagagttacataaattcacatcact 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 attactctttgaatatgccagagagttacataaattcacatcact 645

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,631,038,167
Number of extensions: 102106963
Number of successful extensions: 8898870
Number of sequences better than 10.0: 58
Length of query: 1426
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1402
Effective length of database: 97,308,875,965
Effective search space: 136427044102930
Effective search space used: 136427044102930
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12484-1 (Contig-U12484-1Q) /CSM_Contig/Contig-U12484-1Q.Seq.d
         (1426 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_19(AC116979|pid:none) Dictyostelium discoideum chromoso...    58   7e-07
CU928174_531(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    37   1.4
(Q057S8) Ribosome recycling factor (Ribosome-releasing factor) (...    37   1.4
BA000026_555(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    37   1.4
AY198334_1(AY198334|pid:none) Lolium perenne MADS9 mRNA, complet...    36   3.9
AB478515_69(AB478515|pid:none) Wolbachia endosymbiont of Cadra c...    36   3.9
AE014185_229(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.2
AE014187_642(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.2
CR932322_1(CR932322|pid:none) Paramecium tetraurelia macronuclea...    35   6.7
AF063866_158(AF063866|pid:none) Melanoplus sanguinipes entomopox...    35   6.7

>AC116979_19(AC116979|pid:none) Dictyostelium discoideum chromosome 2
            map 6445720-6776760 strain AX4, complete sequence.
          Length = 2230

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
 Frame = +2

Query: 23   LVHIIAEEFTSRQLEIGEDSKSRFKLNEHKPLPYKN--EAESIQRLWESHHFLGYIFSKV 196
            L++II+EEF+ R L+      + F L     LPY      E++ +L   ++ +G I S +
Sbjct: 806  LLYIISEEFSQRILD-----PNSFDLYSPVKLPYSEVLSYENVDQLKRENNAVGSIISLI 860

Query: 197  ----AILDKFLPLLSLLVDNHSTFKVSVFEEYLKNFITIFAPRDRASSRIMQFLGIVYIE 364
                 +L  F PL+  ++ N   FK    EE+L N+  +    +     ++  +     E
Sbjct: 861  HGEPRVLMIFRPLIITIIGNRY-FKFIFCEEFLTNYPKLALSSNSQVRSLVSAISCQMFE 919

Query: 365  NIKISLPFATGYSRHNVIELILRSH-KTIYVPLLLPFYQSSSSKDITKEVMLQTDVPAIP 541
               I++PF+TGYS+ N++ +++++    +        Y ++  K+  +E     D   I
Sbjct: 920  LPSIAVPFSTGYSKQNLLSILIKTKLSLVQTKNKYDLYNATQRKNYDQEFYCNQDYNYIS 979

Query: 542  KLLKEPSVVRYFCSQSD 592
             + +      Y  + SD
Sbjct: 980  NIFRHDKNCEYIDNNSD 996

 Score = 34.7 bits (78), Expect = 8.8
 Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +2

Query: 1091 ILNDFFYLLVLSIKSFKEITLPILTKSEIDEIVNSVINF-FDHEKLIKTQILINNSTDQN 1267
            +LN   Y++VLS+++F E ++  LT  ++ +  + +IN    +EK+ K+    N  +
Sbjct: 1431 LLNHTLYIIVLSVRTFLESSIS-LTDQQLKQQFSKLINMSIANEKIEKSLFNDNIKSADG 1489

Query: 1268 EKEKLLIENQDKILENLTDN 1327
            +   LL+    +I++N+ +N
Sbjct: 1490 DNPMLLLFKPIEIIKNIEEN 1509

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,071,823,272
Number of extensions: 42277647
Number of successful extensions: 106479
Number of sequences better than 10.0: 10
Number of HSP's gapped: 106391
Number of HSP's successfully gapped: 11
Length of query: 475
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 343
Effective length of database: 623,955,076
Effective search space: 214016591068
Effective search space used: 214016591068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.91  gvh: 0.47  alm: 0.37  top: 0.37  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U12484-1 is cyt
VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0