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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12479-1
Contig ID Contig-U12479-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Contig-U12479-1Q.Seq.d
AAAAAAATCATAATCTCTGAAAGTGATGACGAATTATTGTTACAAACTGT
AAATAAAAAATCAACAACTAAAGAAAAAACTTCAAAACCAACAACAACGA
CAACAACGACAACAACAAAAACAACAACTAAAGATGATACAACTGACACC
GAGGAGGAATACTCAGAAGAGGATATTAAACCAATAAAAAAACCAGTTTC
AAAGGTAACCAAAAAACAAATTCAAGAAAGTGAAGGTTCAGAGGAGGAGA
TAAGTGATTCTGAAGAAGATATTAAACAAGAAGAAGAAAAATCAGAGTCT
TCTGAAGAAGATATTAAACCAAAAAGATTAACTAGATTAAGAAAACCAAT
AACAACAACCTTAAATACTACAACTAAAAAGAAACCAACATTAATTTTAT
CAGAGTCTGAAGGAGAGGAAGAATCCGATGGTTCAATTTATCAAGAAGAA
TCTGATGATTACCAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGA
AGAGGAAGAAGAAGAAGAAGAAAATATTGATCCAAGCAAAATGGTTGATC
AATTGAATGGTTTTTTAAAGTATAAAGAGAAATCAATATATATAAATTCA
ACAAAATCTAAAGAAGGTAAATATTTTAANNNNNNNNN----------NN
NNNNNNNNACAATGTCACCAGCTCCTAAACCAACTAAAACTTTATTAAAA
GATGTTGGGTTAGGTTCAAAGAGAAAAGGAAATGAACCAATTGAAATTTT
AGATGATGGGAATAATAGTCATTATCAATATAATCAAAAACAACAATCAA
TCGCTATTGATTTGGATGATAGTTTTGACAGTAATATCAAATCACCTTCT
AAATTTAATAGTAGTGTTAATAATAGTGTTAATAATTCAATTGTTATTGA
TCTTGATAGTGATGAAGAAAAAGAAAATCAAGATTTCAATCAATCATCTG
TTTTATCAACAACAACAGCAAGTACTCCATCAATGCCTAATATTCAAAAA
GCAACCGAGATTAGAGGTAATAAAGATGATTCATTAGAAACTATTCGTAA
ACAAAAAAATTTCAATTTTTTGGTTAATCGTGCCAAAGAATCTGAATTAA
AAGGTAATAAAACAGAATCATTACATTATATTTTAGATGCTGAAGAATTT
GCAAGAAATAATAATTTGAGTGAAGCACTCATTCAAAATGATGAAGTATT
TAAACATTTAGTAAAAAGAAAGTTTAAAGAAATGTTCCACCTCCAAACT
Gap gap included
Contig length 1239
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2042800
End point 2041578
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U12479
List of clone(s) 

est1=VHH223F,1,629
est2=VHH223Z,630,1221
Translated Amino Acid sequence 
KKIIISESDDELLLQTVNKKSTTKEKTSKPTTTTTTTTTKTTTKDDTTDTEEEYSEEDIK
PIKKPVSKVTKKQIQESEGSEEEISDSEEDIKQEEEKSESSEEDIKPKRLTRLRKPITTT
LNTTTKKKPTLILSESEGEEESDGSIYQEESDDYQEEEEEEEEEEEEEEEEEEENIDPSK
MVDQLNGFLKYKEKSIYINSTKSKEGKYFXXX---

---XXXTMSPAPKPTKTLLKDVGLGSKRKGNEPIEILDDGNNSHYQYNQKQQSIAIDLDD
SFDSNIKSPSKFNSSVNNSVNNSIVIDLDSDEEKENQDFNQSSVLSTTTASTPSMPNIQK
ATEIRGNKDDSLETIRKQKNFNFLVNRAKESELKGNKTESLHYILDAEEFARNNNLSEAL
IQNDEVFKHLVKRKFKEMFHLQT
Translated Amino Acid sequence (All Frames) 
Frame A:
KKIIISESDDELLLQTVNKKSTTKEKTSKPTTTTTTTTTKTTTKDDTTDTEEEYSEEDIK
PIKKPVSKVTKKQIQESEGSEEEISDSEEDIKQEEEKSESSEEDIKPKRLTRLRKPITTT
LNTTTKKKPTLILSESEGEEESDGSIYQEESDDYQEEEEEEEEEEEEEEEEEEENIDPSK
MVDQLNGFLKYKEKSIYINSTKSKEGKYFXXX---

---xxxxnvtss*tn*nfikrcwvrfkekrk*tn*nfr*we**slsi*skttinry*fg*
*f*q*yqitf*i***c***c**fncy*s****rkrksrfqsiicfinnnskysina*ysk
snrd*r**r*firnys*tkkfqffg*scqri*ikr**nriitlyfrc*rickk**fe*st
hsk**si*tfskkkv*rnvpppn

Frame B:
kks*slkvmtnycykl*iknqqlkkklqnqqqrqqrqqqkqqlkmiqltprrntqkriln
q*knqfqr*pknkfkkvkvqrrr*vilkkilnkkkknqsllkkilnqkd*ld*enq*qqp
*ilqlkrnqh*fyqslkerknpmvqfikknlmitkkkkkkkkrkkkkrkkkkkkiliqak
wlin*mvf*sikrnqyi*iqqnlkkvnilxxx---

---XXXTMSPAPKPTKTLLKDVGLGSKRKGNEPIEILDDGNNSHYQYNQKQQSIAIDLDD
SFDSNIKSPSKFNSSVNNSVNNSIVIDLDSDEEKENQDFNQSSVLSTTTASTPSMPNIQK
ATEIRGNKDDSLETIRKQKNFNFLVNRAKESELKGNKTESLHYILDAEEFARNNNLSEAL
IQNDEVFKHLVKRKFKEMFHLQT

Frame C:
knhnl*k**riivtnck*kinn*rknfktnnndnndnnknnn*r*yn*hrggilrrgy*t
nkktsfkgnqktnsrk*rfrggdk*f*rry*trrrkirvf*rry*tkkin*ikktnnnnl
kyyn*ketninfirv*rrgrirwfnlsrri**lprrrrrrrrgrrrrgrrrrrky*skqn
g*siewffkv*reiniykfnki*rr*if*xxx---

---xxxqchqllnqlkly*kmlg*vqrekemnqlkf*mmgiiviiniiknnnqslliwmi
vltvisnhllnlivvliivliiqlllilivmkkkkikisinhlfyqqqqqvlhqclifkk
qprlevikmih*klfvnkkisifwlivpknln*kvikqnhyiif*mlknlqeiii*vkhs
fkmmkylni**keslkkcstsk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12479-1 (Contig-U12479-1Q)
/CSM_Contig/Contig-U12479-1Q.Seq.d
         (1249 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Conti...  1130  0.0
Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13554-1 (Contig-U13554-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11110-1 (Contig-U11110-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10317-1 (Contig-U10317-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12643-1 (Contig-U12643-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11327-1 (Contig-U11327-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U06832-1 (Contig-U06832-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U05994-1 (Contig-U05994-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U14670-1 (Contig-U14670-1Q) /CSM_Contig/Conti...    36  0.088

>Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Contig-U12479-1Q.Seq.d
          Length = 1249

 Score = 1130 bits (570), Expect = 0.0
 Identities = 584/591 (98%)
 Strand = Plus / Plus

                                                                        
Query: 659  acaatgtcaccagctcctaaaccaactaaaactttattaaaagatgttgggttaggttca 718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659  acaatgtcaccagctcctaaaccaactaaaactttattaaaagatgttgggttaggttca 718

                                                                        
Query: 719  aagagaaaaggaaatgaaccaattgaaattttagatgatgggaataatagtcattatcaa 778
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  aagagaaaaggaaatgaaccaattgaaattttagatgatgggaataatagtcattatcaa 778

                                                                        
Query: 779  tataatcaaaaacaacaatcaatcgctattgatttggatgatagttttgacagtaatatc 838
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779  tataatcaaaaacaacaatcaatcgctattgatttggatgatagttttgacagtaatatc 838

                                                                        
Query: 839  aaatcaccttctaaatttaatagtagtgttaataatagtgttaataattcaattgttatt 898
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  aaatcaccttctaaatttaatagtagtgttaataatagtgttaataattcaattgttatt 898

                                                                        
Query: 899  gatcttgatagtgatgaagaaaaagaaaatcaagatttcaatcaatcatctgttttatca 958
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899  gatcttgatagtgatgaagaaaaagaaaatcaagatttcaatcaatcatctgttttatca 958

                                                                        
Query: 959  acaacaacagcaagtactccatcaatgcctaatattcaaaaagcaaccgagattagaggt 1018
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  acaacaacagcaagtactccatcaatgcctaatattcaaaaagcaaccgagattagaggt 1018

                                                                        
Query: 1019 aataaagatgattcattagaaactattcgtaaacnnnnnnntttcaattttttggttaat 1078
            ||||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 1019 aataaagatgattcattagaaactattcgtaaacaaaaaaatttcaattttttggttaat 1078

                                                                        
Query: 1079 cgtgccaaagaatctgaattaaaaggtaataaaacagaatcattacattatattttagat 1138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 cgtgccaaagaatctgaattaaaaggtaataaaacagaatcattacattatattttagat 1138

                                                                        
Query: 1139 gctgaagaatttgcaagaaataataatttgagtgaagcactcattcaaaatgatgaagta 1198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 gctgaagaatttgcaagaaataataatttgagtgaagcactcattcaaaatgatgaagta 1198

                                                               
Query: 1199 tttaaacatttagtaaaaagaaagtttaaagaaatgttccacctccaaact 1249
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 tttaaacatttagtaaaaagaaagtttaaagaaatgttccacctccaaact 1249


 Score =  622 bits (314), Expect = e-178
 Identities = 328/335 (97%)
 Strand = Plus / Plus

                                                                       
Query: 129 taaagatgatacaactgacaccgaggaggaatactcagaagaggatattaaaccaatnnn 188
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 129 taaagatgatacaactgacaccgaggaggaatactcagaagaggatattaaaccaataaa 188

                                                                       
Query: 189 nnnnccagtttcaaaggtaaccaaaaaacaaattcaagaaagtgaaggttcagaggagga 248
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaaaccagtttcaaaggtaaccaaaaaacaaattcaagaaagtgaaggttcagaggagga 248

                                                                       
Query: 249 gataagtgattctgaagaagatattaaacaagaagaagaaaaatcagagtcttctgaaga 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gataagtgattctgaagaagatattaaacaagaagaagaaaaatcagagtcttctgaaga 308

                                                                       
Query: 309 agatattaaaccaaaaagattaactagattaagaaaaccaataacaacaaccttaaatac 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agatattaaaccaaaaagattaactagattaagaaaaccaataacaacaaccttaaatac 368

                                                                       
Query: 369 tacaactaaaaagaaaccaacattaattttatcagagtctgaaggagaggaagaatccga 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tacaactaaaaagaaaccaacattaattttatcagagtctgaaggagaggaagaatccga 428

                                              
Query: 429 tggttcaatttatcaagaagaatctgatgattacc 463
           |||||||||||||||||||||||||||||||||||
Sbjct: 429 tggttcaatttatcaagaagaatctgatgattacc 463


 Score =  212 bits (107), Expect = 7e-55
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 523 aatattgatccaagcaaaatggttgatcaattgaatggttttttaaagtataaagagaaa 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aatattgatccaagcaaaatggttgatcaattgaatggttttttaaagtataaagagaaa 582

                                                          
Query: 583 tcaatatatataaattcaacaaaatctaaagaaggtaaatattttaa 629
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcaatatatataaattcaacaaaatctaaagaaggtaaatattttaa 629


 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 8  tcataatctctgaaagtgatgacgaattattgtt 41
          ||||||||||||||||||||||||||||||||||
Sbjct: 8  tcataatctctgaaagtgatgacgaattattgtt 41


>Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Contig-U14675-1Q.Seq.d
          Length = 1212

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 1010 attagaggtaataaagatgattcattagaaac 1041
            |||| |||| ||| ||||||||||||||||||
Sbjct: 332  attacaggttatagagatgattcattagaaac 363


>Contig-U13554-1 (Contig-U13554-1Q) /CSM_Contig/Contig-U13554-1Q.Seq.d
          Length = 790

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 685 taaaactttattaaaagatg 704
           ||||||||||||||||||||
Sbjct: 627 taaaactttattaaaagatg 646


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,034
Number of Sequences: 6905
Number of extensions: 28034
Number of successful extensions: 3373
Number of sequences better than 10.0: 477
length of query: 1249
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1233
effective length of database: 5,564,391
effective search space: 6860894103
effective search space used: 6860894103
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 1
Homology vs DNA 
Query= Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Contig-U12479-1Q.Seq.d
         (1249 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440937) Dictyostelium discoideum cDNA clone:ddv45m06, 3' ...   781   0.0    2
(BJ422197) Dictyostelium discoideum cDNA clone:ddv45m06, 5' ...   537   0.0    4
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    46   0.014  18
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.074  18
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    32   0.087  13
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   0.13   22
(BX323078) Zebrafish DNA sequence from clone DKEYP-55A5 in l...    36   0.15   10
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    36   0.19   23
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    36   0.19   19
(U69755) Casarea dussumieri cytochrome b (cytb) gene, mitoch...    50   0.20   1
(AC104212) Homo sapiens chromosome 8, clone RP11-941H19, com...    50   0.20   1
(AC024357) Mus musculus clone RP23-1E4, WORKING DRAFT SEQUEN...    50   0.20   1
(AC021510) Homo sapiens chromosome 8 clone RP11-269K7 map 8,...    50   0.20   1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   0.22   12
(EJ058436) 1095456049165 Global-Ocean-Sampling_GS-26-01-01-1...    42   0.22   2
(AC216681) Populus trichocarpa clone POP023-F05, complete se...    40   0.24   7
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   0.26   20
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.32   13
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    38   0.41   20
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    42   0.47   14
(AY648738) Danio rerio FLJ22626-like mRNA, complete cds.           36   0.56   2
(BC162399) Danio rerio NFKB activating protein-like, mRNA (c...    36   0.57   2
(BC162402) Danio rerio NFKB activating protein-like, mRNA (c...    36   0.57   2
(BJ390439) Dictyostelium discoideum cDNA clone:dds22m12, 5' ...    34   0.58   3
(EH999525) AGENCOURT_97509940 NCI_CGAP_ZKid1 Danio rerio cDN...    36   0.58   2
(EH509709) FDR107-P00072-DEPE-F_G13 FDR107 Danio rerio cDNA ...    36   0.58   2
(DY565003) AGENCOURT_70524308 NIH_ZGC_26 Danio rerio cDNA cl...    36   0.58   2
(CN502055) AGENCOURT_22431306 NIH_ZGC_7 Danio rerio cDNA clo...    36   0.58   2
(CN171182) AGENCOURT_21019720 NIH_ZGC_8 Danio rerio cDNA clo...    36   0.58   2
(BM342614) fw46a05.y1 Zebrafish SJD day 3 embryo Danio rerio...    36   0.59   2
(EV565129) DR_ATE_NRM49_C05 adult testis normalized (TLL) Da...    36   0.60   2
(DY887394) CeleSEQ3389 Cunninghamella elegans pBluescript (E...    36   0.63   3
(DX997921) CHORI103-51B16.TJ CHORI103 Schistosoma mansoni ge...    38   0.64   3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.69   15
(EX245270) PY04013X1H05.f1 PY04 Carica papaya cDNA, mRNA seq...    40   0.70   3
(AC145109) Medicago truncatula chromosome 6 clone mth2-25f20...    36   0.75   10
(EH677362) CCIL2360.b1_O13.ab1 CCI(LMS) chicory Cichorium in...    40   0.80   2
(AC119980) Mus musculus chromosome 8, clone RP24-495J19, com...    48   0.81   1
(AC117750) Mus musculus chromosome 8, clone RP24-325F22, com...    48   0.81   1
(AM456530) Vitis vinifera contig VV78X159055.1, whole genome...    48   0.81   1
(AY094639) Drosophila melanogaster AT09029 full insert cDNA.       48   0.81   1
(CC297822) CH261-52C10_RM1.1 CH261 Gallus gallus genomic clo...    48   0.81   1
(FE967608) PLATE_T3_040_B02_03DEC2004_014 Opium poppy elicit...    48   0.81   1
(FE967348) PLATE_T3_037_C08_01DEC2004_060 Opium poppy elicit...    48   0.81   1
(FE965144) PLATE_T3_013_D03_23NOV2004_025 Opium poppy elicit...    48   0.81   1
(AP009356) Onion yellows phytoplasma OY-W genomic DNA, parti...    46   0.81   5
(EL348305) CCEL4434.b1_C06.ab1 CCE(LMS) endive Cichorium end...    40   0.89   2
(DW141658) CLSY9719.b1_N05.ab1 CLS(XYZ) lettuce sativa Lactu...    36   0.92   2
(EX245570) PY04023X1G12.f1 PY04 Carica papaya cDNA, mRNA seq...    40   0.93   3
(DW141632) CLSY9692.b1_G23.ab1 CLS(XYZ) lettuce sativa Lactu...    36   0.95   2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   1.4    13
(AU060219) Dictyostelium discoideum slug cDNA, clone SLA594.       40   1.4    3
(AC189857) Pongo abelii chromosome UNK clone CH276-2H12, com...    38   1.5    6
(EJ423779) 1093012249880 Global-Ocean-Sampling_GS-28-01-01-1...    34   1.6    3
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    34   1.6    10
(AC118396) Rattus norvegicus clone CH230-112E22, WORKING DRA...    36   1.6    2
(AC178303) Strongylocentrotus purpuratus clone R3-3101A23, W...    36   1.6    2
(CU407220) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.6    2
(AY533112) Aster yellows witches'-broom phytoplasma hypothet...    46   1.7    2
(CU582816) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.8    11
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    30   1.8    12
(AM464055) Vitis vinifera contig VV78X046680.39, whole genom...    36   2.0    2
(AC214877) Pteropus vampyrus clone CH279-112M3, WORKING DRAF...    32   2.0    7
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   2.0    14
(AC181188) Strongylocentrotus purpuratus clone R3-13K7, WORK...    34   2.1    8
(BG308718) fl86g11.x1 Zebrafish adult retina cDNA Danio reri...    36   2.1    3
(BC095558) Danio rerio cDNA clone IMAGE:7435705.                   36   2.1    2
(EJ770242) 1092966001316 Global-Ocean-Sampling_GS-30-02-01-1...    36   2.2    2
(EH521951) FDR107-P00034-DEPE-R_A15 FDR107 Danio rerio cDNA ...    36   2.2    2
(EJ762319) 1092963145892 Global-Ocean-Sampling_GS-30-02-01-1...    36   2.2    2
(AE017263) Mesoplasma florum L1 complete genome.                   30   2.2    21
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    32   2.2    21
(AM043323) Schistosoma mansoni lung schistosomulum EST, clon...    32   2.2    2
(CE745731) tigr-gss-dog-17000369549488 Dog Library Canis lup...    34   2.2    2
(AF131221) Dictyostelium discoideum p21-activated protein ki...    34   2.2    4
(AZ674229) ENTKJ35TR Entamoeba histolytica Sheared DNA Entam...    36   2.3    3
(Z98551) Plasmodium falciparum MAL3P6.                             36   2.3    9
(AE015450) Mycoplasma gallisepticum strain R complete genome.      34   2.5    20
(EI956523) SB_BBc208-M20.R SB_BBc Sorghum bicolor genomic 3'...    36   2.5    3
(BX004999) Zebrafish DNA sequence from clone DKEY-66I24 in l...    36   2.7    9
(AF273674) Plasmodium falciparum DNA-dependent RNA polymeras...    32   2.7    5
(AM664582) Entamoeba moshkovskii FIC GSS, clone mosh100g09.q1k.    42   2.8    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    40   3.0    12
(AP006667) Lotus japonicus genomic DNA, chromosome 5, clone:...    46   3.2    1
(AC006026) Homo sapiens BAC clone GS1-96J14 from 7, complete...    46   3.2    1
(AC128723) Rattus norvegicus clone CH230-169C5, WORKING DRAF...    46   3.2    1
(AC094029) Rattus norvegicus clone CH230-33M8, *** SEQUENCIN...    46   3.2    1
(CU468358) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.2    1
(CU468173) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.2    1
(AC197406) Pan troglodytes chromosome 7 clone CH251-324M23, ...    46   3.2    1
(AC168523) Strongylocentrotus purpuratus clone R3-3108A8, WO...    46   3.2    1
(BH479067) BOGXM92TR BOGX Brassica oleracea genomic clone BO...    46   3.2    1
(FH229077) CHO_OF3403xe24f1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   3.2    1
(ET069105) QM0AAA2BA06RM1 CCL1 Citrus clementina genomic clo...    46   3.2    1
(EK086781) 1092961158903 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.2    1
(EK066188) 1092960126942 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.2    1
(EJ912343) 1093018543835 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.2    1
(EJ060618) 1095456061003 Global-Ocean-Sampling_GS-26-01-01-1...    46   3.2    1
(EI914272) VUH2-64H8TR VUUBBa (VUH2) Vigna unguiculata genom...    46   3.2    1
(ED536535) KBrB129H08F KBrB, Brassica rapa BamHI BAC library...    46   3.2    1

>(BJ440937) Dictyostelium discoideum cDNA clone:ddv45m06, 3' end,
            single read.
          Length = 592

 Score =  781 bits (394), Expect(2) = 0.0
 Identities = 394/394 (100%)
 Strand = Plus / Minus


Query: 659  acaatgtcaccagctcctaaaccaactaaaactttattaaaagatgttgggttaggttca 718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592  acaatgtcaccagctcctaaaccaactaaaactttattaaaagatgttgggttaggttca 533


Query: 719  aagagaaaaggaaatgaaccaattgaaattttagatgatgggaataatagtcattatcaa 778
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532  aagagaaaaggaaatgaaccaattgaaattttagatgatgggaataatagtcattatcaa 473


Query: 779  tataatcaaaaacaacaatcaatcgctattgatttggatgatagttttgacagtaatatc 838
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472  tataatcaaaaacaacaatcaatcgctattgatttggatgatagttttgacagtaatatc 413


Query: 839  aaatcaccttctaaatttaatagtagtgttaataatagtgttaataattcaattgttatt 898
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412  aaatcaccttctaaatttaatagtagtgttaataatagtgttaataattcaattgttatt 353


Query: 899  gatcttgatagtgatgaagaaaaagaaaatcaagatttcaatcaatcatctgttttatca 958
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352  gatcttgatagtgatgaagaaaaagaaaatcaagatttcaatcaatcatctgttttatca 293


Query: 959  acaacaacagcaagtactccatcaatgcctaatattcaaaaagcaaccgagattagaggt 1018
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292  acaacaacagcaagtactccatcaatgcctaatattcaaaaagcaaccgagattagaggt 233


Query: 1019 aataaagatgattcattagaaactattcgtaaac 1052
            ||||||||||||||||||||||||||||||||||
Sbjct: 232  aataaagatgattcattagaaactattcgtaaac 199

 Score =  377 bits (190), Expect(2) = 0.0
 Identities = 190/190 (100%)
 Strand = Plus / Minus


Query: 1060 tttcaattttttggttaatcgtgccaaagaatctgaattaaaaggtaataaaacagaatc 1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191  tttcaattttttggttaatcgtgccaaagaatctgaattaaaaggtaataaaacagaatc 132


Query: 1120 attacattatattttagatgctgaagaatttgcaagaaataataatttgagtgaagcact 1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131  attacattatattttagatgctgaagaatttgcaagaaataataatttgagtgaagcact 72


Query: 1180 cattcaaaatgatgaagtatttaaacatttagtaaaaagaaagtttaaagaaatgttcca 1239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71   cattcaaaatgatgaagtatttaaacatttagtaaaaagaaagtttaaagaaatgttcca 12


Query: 1240 cctccaaact 1249
            ||||||||||
Sbjct: 11   cctccaaact 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,601,471,729
Number of extensions: 111888942
Number of successful extensions: 10387637
Number of sequences better than 10.0: 182
Length of query: 1249
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1225
Effective length of database: 97,308,875,965
Effective search space: 119203373057125
Effective search space used: 119203373057125
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Contig-U12479-1Q.Seq.d
         (1249 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014188_93(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    37   1.9
CR940347_247(CR940347|pid:none) Theileria annulata strain Ankara...    37   1.9
AE014187_702(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.5
AL844509_552(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.3
AE014187_529(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.6
DQ008305_1(DQ008305|pid:none) Staphylococcus simulans biofilm-as...    35   5.6
AL844505_191(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.3
BC079988_1(BC079988|pid:none) Xenopus laevis MGC81626 protein, m...    34   9.6

>AE014188_93(AE014188|pid:none) Plasmodium falciparum 3D7 chromosome
            12, complete sequence.  &AE014845_37(AE014845|pid:none)
            &AJ318336_1(AJ318336|pid:none)
          Length = 1461

 Score = 36.6 bits (83), Expect = 1.9
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 17/186 (9%)
 Frame = +2

Query: 740  IEILDDGN-NSHYQ------YNQKQQSIAIDLDDSFDSNIKSPSKFXXXXXXXXXXXXXX 898
            +E  DD N N +YQ      YN+ ++ I  D DD  D   K   K
Sbjct: 228  MEKQDDTNINLNYQRCYQNYYNKNKKYIYNDTDDDND---KKCVKKNHVHNKDKCKNNKY 284

Query: 899  DLDSDEEKENQDFNQSSVLSTTTASTPSMPNIQKATEIRGNKDDSLETIRKQKNFNFLVN 1078
             L +D+   N+D   SS  +  T     + NI   + I   K   + T   +K+F   ++
Sbjct: 285  FLTNDDLSYNEDILSSSTNTCDTLDKIKLDNIY-GSFIDDVKSSFVLTKNMKKSFTHYIH 343

Query: 1079 RAKESELKGNKTESLHYILDAEE----------FARNNNLSEALIQNDEVFKHLVKRKFK 1228
            + K  E   NK   +H+  + ++           + NNN++E   +ND +    + ++
Sbjct: 344  KQKNKEK--NKDNEIHHDNNTDQNEYSDFNDFDVSSNNNMNEQEKKNDNINNQHITKEKM 401

Query: 1229 EMFHLQ 1246
             M H Q
Sbjct: 402  TMLHYQ 407

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,210,437,128
Number of extensions: 20811892
Number of successful extensions: 48957
Number of sequences better than 10.0: 8
Number of HSP's gapped: 48873
Number of HSP's successfully gapped: 8
Length of query: 416
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 285
Effective length of database: 627,191,635
Effective search space: 178749615975
Effective search space used: 178749615975
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: peroxisomal

>> prediction for Contig-U12479-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0