Contig-U12463-1
Contig ID Contig-U12463-1
Contig update 2002.12.18
Contig sequence
>Contig-U12463-1 (Contig-U12463-1Q) /CSM_Contig/Contig-U12463-1Q.Seq.d
CACTGTTGGCCTACTGGGTGTGATTATTTATCTATTTTTGTGTGTGTGTT
TTTTTGTGAAATAACTTTAATTCAACAGCAATAAAAATAAATTAATAATA
ATAACCAAAAAAGAAAAAAAAAA----------ACCGTTATCAATTACAA
TATGCCAAATAATATGGCAAATTACATTCACAGAGTTGGTCGTACTGCTC
GTGCTGGTATGGATGGTAAATCTTGCTCTTTTATCACTGATAATGATCGT
AAACTCTTAAAAGATATTGTTACAAAAGCAAGAAATAAAGCAAAATCAAG
ATCTGTTTCACAAGATAATGTAAATTTCTGGAGAAATAGAATTGAAGAAT
TAACAGAAGATATTAAATCAATTGTTAGAGAAGAAATGAAAGAAGCAGAT
TTAAGAAAAGCAGAGAAAACATTAGATAAAGCAGAGAAAATCATTTCGAA
TGCTGATGCAAATGTTGAAACACCAAAAGTTTGGTATAAAACAAAACAAG
AAGAAGATAAATCAAAAGAGTTATGGAAGATTGAAAATAACATTGTTAAT
CCAGGTAAAAAATTAAAGGCACCAATCGATGTTACCGGTGTAAATAATGT
ACCATCAATTAAAAAATTAAAACAAAAGAAAGATCCATACTATGGTTTAT
CTAGAAAACAAAGAAGACATAGACAATTTAAAGAAGAGTTTGAACGTGAA
CAACAAGAGGAGAGAAAGAGAAAAGGTGGTGACGATGGTGATGATAATGA
AGAAATTGATTCTGGTAAAATGTT

Gap gap included
Contig length 764
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4857575
End point 4858322
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 7
Link to clone list U12463
List of clone(s)

est1=VHL131F,1,116
est2=VHG292F,18,123
est3=VHC552Z,124,731
est4=AHF536Z,127,730
est5=VHG292Z,178,687
est6=VHE367Z,218,765
est7=VHL131Z,218,729
Translated Amino Acid sequence
tvgllgviiylflcvcffvk*l*FNSNKNKLIIITKKEKK---

---TVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRS
VSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPKVW
YKTKQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIKKLKQKKDPYYGLSRKQR
RHRQFKEEFEREQQEERKRKGGDDGDDNEEIDSGKM


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgcdylsifvcvffceitliqqq*k*innnnqkrkkk---

---TVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRS
VSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPKVW
YKTKQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIKKLKQKKDPYYGLSRKQR
RHRQFKEEFEREQQEERKRKGGDDGDDNEEIDSGKM

Frame B:
tvgllgviiylflcvcffvk*l*FNSNKNKLIIITKKEKK---

---plsiticqiiwqitftelvvllvlvwmvnlallslimivns*killqkqeikqnqdl
fhkim*isgeielkn*qkilnqllekk*kkqi*ekqrkh*ikqrksfrmlmqmlkhqkfg
ikqnkkkinqksygrlkitlliqvkn*rhqsmlpv*imyhqlkn*nkrkihtmvylenke
didnlkkslnvnnkrrerekvvtmvmimkklilvkc

Frame C:
llaywv*lfiyfcvcvfl*nnfnstaikin****pkkkkk---

---ryqlqyak*ygklhsqswsycscwygw*illfyh***s*tlkrycykskk*skikic
ftr*ckflek*n*rinrry*inc*rrnersrfkksrenir*srenhfec*ckc*ntkslv
*nktrrr*ikrvmed*k*hc*sr*kikgtnrcyrck*ctin*kiktkersilwfi*ktkk
t*ti*rrv*t*ttrgekekrw*rw****rn*fw*nv

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12463-1 (Contig-U12463-1Q)
/CSM_Contig/Contig-U12463-1Q.Seq.d
(774 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12463-1 (Contig-U12463-1Q) /CSM_Contig/Conti... 662 0.0
Contig-U11919-1 (Contig-U11919-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U11481-1 (Contig-U11481-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U10654-1 (Contig-U10654-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U01195-1 (Contig-U01195-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U14242-1 (Contig-U14242-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U13869-1 (Contig-U13869-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U10602-1 (Contig-U10602-1Q) /CSM_Contig/Conti... 40 0.003

>Contig-U12463-1 (Contig-U12463-1Q) /CSM_Contig/Contig-U12463-1Q.Seq.d
Length = 774

Score = 662 bits (334), Expect = 0.0
Identities = 334/334 (100%)
Strand = Plus / Plus


Query: 441 tcatttcgaatgctgatgcaaatgttgaaacaccaaaagtttggtataaaacaaaacaag 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatttcgaatgctgatgcaaatgttgaaacaccaaaagtttggtataaaacaaaacaag 500


Query: 501 aagaagataaatcaaaagagttatggaagattgaaaataacattgttaatccaggtaaaa 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaagataaatcaaaagagttatggaagattgaaaataacattgttaatccaggtaaaa 560


Query: 561 aattaaaggcaccaatcgatgttaccggtgtaaataatgtaccatcaattaaaaaattaa 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattaaaggcaccaatcgatgttaccggtgtaaataatgtaccatcaattaaaaaattaa 620


Query: 621 aacaaaagaaagatccatactatggtttatctagaaaacaaagaagacatagacaattta 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaaaagaaagatccatactatggtttatctagaaaacaaagaagacatagacaattta 680


Query: 681 aagaagagtttgaacgtgaacaacaagaggagagaaagagaaaaggtggtgacgatggtg 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaagagtttgaacgtgaacaacaagaggagagaaagagaaaaggtggtgacgatggtg 740


Query: 741 atgataatgaagaaattgattctggtaaaatgtt 774
||||||||||||||||||||||||||||||||||
Sbjct: 741 atgataatgaagaaattgattctggtaaaatgtt 774


Score = 482 bits (243), Expect = e-136
Identities = 243/243 (100%)
Strand = Plus / Plus


Query: 134 accgttatcaattacaatatgccaaataatatggcaaattacattcacagagttggtcgt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 accgttatcaattacaatatgccaaataatatggcaaattacattcacagagttggtcgt 193


Query: 194 actgctcgtgctggtatggatggtaaatcttgctcttttatcactgataatgatcgtaaa 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 actgctcgtgctggtatggatggtaaatcttgctcttttatcactgataatgatcgtaaa 253


Query: 254 ctcttaaaagatattgttacaaaagcaagaaataaagcaaaatcaagatctgtttcacaa 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctcttaaaagatattgttacaaaagcaagaaataaagcaaaatcaagatctgtttcacaa 313


Query: 314 gataatgtaaatttctggagaaatagaattgaagaattaacagaagatattaaatcaatt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gataatgtaaatttctggagaaatagaattgaagaattaacagaagatattaaatcaatt 373


Query: 374 gtt 376
|||
Sbjct: 374 gtt 376


Score = 97.6 bits (49), Expect = 2e-20
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 58 gaaataactttaattcaacagcaataaaaataaattaataataataacc 106
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 gaaataactttaattcaacagcaataaaaataaattaataataataacc 106


Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactgggtgtgattatttatcta 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactgggtgtgattatttatcta 34


>Contig-U11919-1 (Contig-U11919-1Q) /CSM_Contig/Contig-U11919-1Q.Seq.d
Length = 1151

Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 80 aataaaaataaattaataataataa 104
||||||||||||| |||||||||||
Sbjct: 1124 aataaaaataaataaataataataa 1148


>Contig-U11481-1 (Contig-U11481-1Q) /CSM_Contig/Contig-U11481-1Q.Seq.d
Length = 1109

Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 80 aataaaaataaattaataataataa 104
|||||||||||| ||||||||||||
Sbjct: 1016 aataaaaataaaataataataataa 1040


Score = 34.2 bits (17), Expect = 0.21
Identities = 23/25 (92%)
Strand = Plus / Plus


Query: 80 aataaaaataaattaataataataa 104
|||||||||||| |||||| |||||
Sbjct: 1002 aataaaaataaaataataaaaataa 1026


Score = 30.2 bits (15), Expect = 3.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 3 ctgttggcctactgg 17
|||||||||||||||
Sbjct: 1 ctgttggcctactgg 15


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,083
Number of Sequences: 6905
Number of extensions: 30083
Number of successful extensions: 4033
Number of sequences better than 10.0: 924
length of query: 774
length of database: 5,674,871
effective HSP length: 16
effective length of query: 758
effective length of database: 5,564,391
effective search space: 4217808378
effective search space used: 4217808378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12463-1 (Contig-U12463-1Q) /CSM_Contig/Contig-U12463-1Q.Seq.d
(774 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ438165) Dictyostelium discoideum cDNA clone:ddv36g13, 3' ... 597 0.0 2
(BJ351181) Dictyostelium discoideum cDNA clone:dda42g09, 3' ... 575 0.0 2
(BJ439142) Dictyostelium discoideum cDNA clone:ddv39f17, 3' ... 654 0.0 2
(BJ443586) Dictyostelium discoideum cDNA clone:ddv53m07, 3' ... 585 0.0 2
(BJ440483) Dictyostelium discoideum cDNA clone:ddv43g24, 3' ... 502 0.0 2
(BJ424737) Dictyostelium discoideum cDNA clone:ddv53m07, 5' ... 68 6e-14 2
(BJ231226) Triticum aestivum cDNA clone:whdl25p24, 3' end, s... 56 4e-04 2
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 58 5e-04 1
(AP005723) Oryza sativa Japonica Group genomic DNA, chromoso... 58 5e-04 1
(EA688312) Sequence 67191 from patent US 7365185. 58 5e-04 1
(EA171272) Sequence 35587 from patent US 7214786. 58 5e-04 1
(CL964767) OsIFCC011033 Oryza sativa Express Library Oryza s... 58 5e-04 1
(DT712144) s13dFA25G03SD024_503012 Tall fescue, Festuca arun... 58 5e-04 1
(DT690405) s13dFA75H06FM060_505320 Tall fescue, Festuca arun... 58 5e-04 1
(DT684731) s13dFA10H12FS104_518610 Tall fescue, Festuca arun... 58 5e-04 1
(DT684149) s13dFA0CD11DS094_520736 Tall fescue, Festuca arun... 58 5e-04 1
(CK208782) FGAS020501 Triticum aestivum FGAS: Library 5 GATE... 58 5e-04 1
(CK156776) FGAS037798 Triticum aestivum FGAS: TaLt4 Triticum... 58 5e-04 1
(CJ845953) Triticum aestivum cDNA clone:whatlal39n16, 3' end. 58 5e-04 1
(CJ787559) Triticum aestivum cDNA clone:whatl18a10, 3' end. 58 5e-04 1
(CJ787558) Triticum aestivum cDNA clone:whatl18a09, 3' end. 58 5e-04 1
(CJ713691) Triticum aestivum cDNA clone whva19k18 5', Y.Ogih... 58 5e-04 1
(CJ613642) Triticum aestivum cDNA clone rwhvd17h12 3', Y.Ogi... 58 5e-04 1
(CJ609089) Triticum aestivum cDNA clone rwhva19k18 3', Y.Ogi... 58 5e-04 1
(CJ562009) Triticum aestivum cDNA clone rwhkv17m05 3', Y.Ogi... 58 5e-04 1
(CJ552427) Triticum aestivum cDNA clone rwhhg2f06 3', Y.Ogih... 58 5e-04 1
(CJ531225) Triticum aestivum cDNA clone rwhec17k20 3', Y.Ogi... 58 5e-04 1
(CJ522101) Triticum aestivum cDNA clone rwhcs4n05 3', Y.Ogih... 58 5e-04 1
(CJ515771) Triticum aestivum cDNA clone rwhfl4f24 3', Y.Ogih... 58 5e-04 1
(CJ513699) Triticum aestivum cDNA clone rwhfl40i06 3', Y.Ogi... 58 5e-04 1
(CJ512651) Triticum aestivum cDNA clone rwhfl37f16 3', Y.Ogi... 58 5e-04 1
(CD929054) GR45.106N23F010319 GR45 Triticum aestivum cDNA cl... 58 5e-04 1
(CA719545) wkm2n.pk004.i7 wkm2n Triticum aestivum cDNA clone... 58 5e-04 1
(BQ458598) HA04M04r HA Hordeum vulgare subsp. vulgare cDNA c... 58 5e-04 1
(BJ309346) Triticum aestivum cDNA clone:whyd19l24, 3' end, s... 58 5e-04 1
(BJ307734) Triticum aestivum cDNA clone:whyd12l24, 3' end, s... 58 5e-04 1
(BJ218614) Triticum aestivum cDNA clone:wh38k04, 3' end, sin... 58 5e-04 1
(FE628984) CBYY8302.g1 CBYY Panicum virgatum Kanlow crown Pa... 58 5e-04 1
(FD521708) RUS04E01w HA Hordeum vulgare subsp. vulgare cDNA ... 58 5e-04 1
(AV913890) Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDN... 58 5e-04 1
(BJ421785) Dictyostelium discoideum cDNA clone:ddv43g24, 5' ... 42 5e-04 2
(CF181845) ISO1D7F Iso cDNA Isotricha sp. BBF-2003 cDNA simi... 38 0.002 3
(CW070734) 104_322_10590960_114_30544 Sorghum methylation fi... 56 0.002 1
(CW069875) 104_320_10526159_1_30088 Sorghum methylation filt... 56 0.002 1
(BQ753154) WHE4123_F08_L15ZS Wheat salt-stressed root cDNA l... 56 0.002 1
(EB246299) PEG003-C-229117-501 Normalized Pedal-Pleural Gang... 54 0.008 1
(EB230633) PEG003-C-204902-501 Normalized Pedal-Pleural Gang... 54 0.008 1
(EB202374) PEG002-C-112228-501 Normalized Pedal-Pleural Gang... 54 0.008 1
(FD503098) Pam01b_22_G02_C013.g1 Persea americana flower bud... 54 0.008 1
(EY392378) CAXA978.rev CAXA Helobdella robusta Subtracted La... 54 0.008 1
(EY389813) CAXA8049.rev CAXA Helobdella robusta Subtracted L... 54 0.008 1
(EY371465) CAXA13460.rev CAXA Helobdella robusta Subtracted ... 54 0.008 1
(AV956992) Ciona intestinalis cDNA, clone:cieg10c09, 5' end,... 38 0.013 2
(AC177436) Strongylocentrotus purpuratus clone R3-5B24, WORK... 40 0.021 2
(FK151721) XABT181304.b1 Gateway compatible cien cDNA librar... 38 0.021 2
(FK169543) XABT192131.b1 Gateway compatible cien cDNA librar... 38 0.024 2
(BV255991) S235P6260RB9.T0 ItalianGreyhound Canis familiaris... 52 0.032 1
(BD100737) Novel genes cloned in humanneuroblastoma and frag... 52 0.032 1
(BD020799) Novel gene and novel gene fragment cloned in huma... 52 0.032 1
(CU928594) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.032 1
(EY385489) CAXA5717.rev CAXA Helobdella robusta Subtracted L... 52 0.032 1
(AK114665) Ciona intestinalis cDNA, clone:cieg010c09, full i... 38 0.052 2
(FF761369) XABT67061.fwd Gateway compatible cien cDNA librar... 42 0.072 2
(AC140798) Mus musculus clone RP24-80F10, WORKING DRAFT SEQU... 40 0.075 2
(AL732441) Mouse DNA sequence from clone RP23-142N2 on chrom... 40 0.076 2
(AC206119) Saccoglossus kowalevskii BAC CUGI_SK_BA 001B10 (... 40 0.078 2
(FF689816) XABT102833.fwd Gateway compatible cien cDNA libra... 42 0.081 2
(AC209249) Zea mays chromosome 5 clone CH201-278D5; ZMMBBc02... 50 0.082 2
(FF693681) XABT105332.fwd Gateway compatible cien cDNA libra... 42 0.083 2
(CJ482940) Macaca fascicularis mRNA, clone: QtsA-10353, 5' e... 48 0.092 2
(CJ448426) Macaca fascicularis mRNA, clone: QflA-13801, 5' e... 38 0.094 2
(AC079347) Homo sapiens BAC clone RP11-352J13 from 2, comple... 50 0.13 1
(AC147750) Otolemur garnettii clone CH256-376M23, WORKING DR... 50 0.13 1
(AC222378) Bos taurus clone CH240-416K24, WORKING DRAFT SEQU... 50 0.13 1
(AY108050) Zea mays PCO134180 mRNA sequence. 50 0.13 1
(ES239388) gmnblits_0004g10.pDNRm13r Gadus morhua liver ther... 50 0.13 1
(EH193197) EC04_d_1783 EC04 Eragrostis curvula cDNA, mRNA se... 50 0.13 1
(EB652957) 6Y_JF-rd_A03 pAPO Cenchrus ciliaris cDNA 3', mRNA... 50 0.13 1
(EB652948) 6Y_JF_A03 pAPO Cenchrus ciliaris cDNA 3', mRNA se... 50 0.13 1
(DV492474) 1000098-D07.T7-1 UGI-Reseq Zea mays cDNA, mRNA se... 50 0.13 1
(DN216864) MEST1042_E02.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mR... 50 0.13 1
(CN124678) RHOH1_6_F07.b1_A002 Acid- and alkaline-treated ro... 50 0.13 1
(CF769927) DSBF1_4_E06.g1_A010 Drought-stressed before flowe... 50 0.13 1
(CF769841) DSBF1_4_E06.b1_A010 Drought-stressed before flowe... 50 0.13 1
(CD915655) G550.127A19F010716 G550 Triticum aestivum cDNA cl... 50 0.13 1
(CD433299) EL01N0307A03.b Endosperm_3 Zea mays cDNA, mRNA se... 50 0.13 1
(CA735977) wpi1s.pk006.g8 wpi1s Triticum aestivum cDNA clone... 50 0.13 1
(CA282477) SCCCSD2001D04.g SD2 Saccharum officinarum cDNA cl... 50 0.13 1
(CA198868) SCSGFL1079B09.g FL1 Saccharum officinarum cDNA cl... 50 0.13 1
(CA152004) SCJFRZ2014G07.g RZ2 Saccharum officinarum cDNA cl... 50 0.13 1
(CA132014) SCBGRT1052B02.g RT1 Saccharum officinarum cDNA cl... 50 0.13 1
(CA115569) SCSBLB1035G12.g LB1 Saccharum officinarum cDNA cl... 50 0.13 1
(CA113599) SCQGLB1027E03.g LB1 Saccharum officinarum cDNA cl... 50 0.13 1
(FE234539) CAPG2878.rev CAPG Naegleria gruberi amoeba stage ... 50 0.13 1
(EY389175) CAXA7706.rev CAXA Helobdella robusta Subtracted L... 50 0.13 1
(EY373232) CAXA14450.rev CAXA Helobdella robusta Subtracted ... 50 0.13 1
(EY373168) CAXA14414.rev CAXA Helobdella robusta Subtracted ... 50 0.13 1
(EY372690) CAXA14144.rev CAXA Helobdella robusta Subtracted ... 50 0.13 1
(EW965019) BRHL_02_I18_T7 Headlice composite library with al... 50 0.13 1
(AW037123) 614018C04.y1 614 - root cDNA library from Walbot ... 50 0.13 1

>(BJ438165) Dictyostelium discoideum cDNA clone:ddv36g13, 3' end,
single read.
Length = 608

Score = 597 bits (301), Expect(2) = 0.0
Identities = 301/301 (100%)
Strand = Plus / Minus


Query: 441 tcatttcgaatgctgatgcaaatgttgaaacaccaaaagtttggtataaaacaaaacaag 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcatttcgaatgctgatgcaaatgttgaaacaccaaaagtttggtataaaacaaaacaag 242


Query: 501 aagaagataaatcaaaagagttatggaagattgaaaataacattgttaatccaggtaaaa 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagaagataaatcaaaagagttatggaagattgaaaataacattgttaatccaggtaaaa 182


Query: 561 aattaaaggcaccaatcgatgttaccggtgtaaataatgtaccatcaattaaaaaattaa 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattaaaggcaccaatcgatgttaccggtgtaaataatgtaccatcaattaaaaaattaa 122


Query: 621 aacaaaagaaagatccatactatggtttatctagaaaacaaagaagacatagacaattta 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacaaaagaaagatccatactatggtttatctagaaaacaaagaagacatagacaattta 62


Query: 681 aagaagagtttgaacgtgaacaacaagaggagagaaagagaaaaggtggtgacgatggtg 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagaagagtttgaacgtgaacaacaagaggagagaaagagaaaaggtggtgacgatggtg 2


Query: 741 a 741
|
Sbjct: 1 a 1

Score = 482 bits (243), Expect(2) = 0.0
Identities = 243/243 (100%)
Strand = Plus / Minus


Query: 134 accgttatcaattacaatatgccaaataatatggcaaattacattcacagagttggtcgt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 accgttatcaattacaatatgccaaataatatggcaaattacattcacagagttggtcgt 549


Query: 194 actgctcgtgctggtatggatggtaaatcttgctcttttatcactgataatgatcgtaaa 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 actgctcgtgctggtatggatggtaaatcttgctcttttatcactgataatgatcgtaaa 489


Query: 254 ctcttaaaagatattgttacaaaagcaagaaataaagcaaaatcaagatctgtttcacaa 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctcttaaaagatattgttacaaaagcaagaaataaagcaaaatcaagatctgtttcacaa 429


Query: 314 gataatgtaaatttctggagaaatagaattgaagaattaacagaagatattaaatcaatt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gataatgtaaatttctggagaaatagaattgaagaattaacagaagatattaaatcaatt 369


Query: 374 gtt 376
|||
Sbjct: 368 gtt 366

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 900,446,737
Number of extensions: 64547857
Number of successful extensions: 6363325
Number of sequences better than 10.0: 588
Length of query: 774
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 750
Effective length of database: 97,308,875,965
Effective search space: 72981656973750
Effective search space used: 72981656973750
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 6
Homology vs Protein
Query= Contig-U12463-1 (Contig-U12463-1Q) /CSM_Contig/Contig-U12463-1Q.Seq.d
(774 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54TJ4) RecName: Full=Probable ATP-dependent RNA helicase ddx27... 359 6e-98
AC147407_28(AC147407|pid:none) Medicago truncatula clone mth2-15... 112 2e-23
(Q0INC5) RecName: Full=DEAD-box ATP-dependent RNA helicase 28; ... 110 6e-23
BC088338_1(BC088338|pid:none) Rattus norvegicus DEAD (Asp-Glu-Al... 108 1e-22
BC011321_1(BC011321|pid:none) Mus musculus DEAD (Asp-Glu-Ala-Asp... 108 1e-22
(Q921N6) RecName: Full=Probable ATP-dependent RNA helicase DDX27... 108 1e-22
AY648729_1(AY648729|pid:none) Danio rerio DEAD box polypeptide 2... 107 4e-22
BC011927_1(BC011927|pid:none) Homo sapiens DEAD (Asp-Glu-Ala-Asp... 105 2e-21
EU718675_1(EU718675|pid:none) Homo sapiens DEAD box polypeptide ... 105 2e-21
AF336851_1(AF336851|pid:none) Homo sapiens RNA helicase-like pro... 105 2e-21
(Q9BXF0) RecName: Full=Probable ATP-dependent RNA helicase DDX27... 105 2e-21
AK300135_1(AK300135|pid:none) Homo sapiens cDNA FLJ61659 complet... 105 2e-21
AX405698_1(AX405698|pid:none) Sequence 113 from Patent WO0222660. 105 2e-21
AB168247_1(AB168247|pid:none) Macaca fascicularis testis cDNA cl... 105 2e-21
AK319072_1(AK319072|pid:none) Arabidopsis thaliana AT4G16630 mRN... 103 8e-21
AJ719804_1(AJ719804|pid:none) Gallus gallus mRNA for hypothetica... 103 8e-21
(Q9ZRZ8) RecName: Full=DEAD-box ATP-dependent RNA helicase 28; ... 103 8e-21
AK316860_1(AK316860|pid:none) Arabidopsis thaliana AT4G16630 mRN... 103 8e-21
DQ399050_1(DQ399050|pid:none) Ictalurus punctatus clone SQG10 DE... 99 2e-19
(Q5KIK3) RecName: Full=ATP-dependent RNA helicase DRS1; ... 97 4e-19
(P0C2N7) RecName: Full=ATP-dependent RNA helicase DRS1; ... 96 1e-18
AC025726_24(AC025726|pid:none) Caenorhabditis elegans cosmid Y71... 96 2e-18
(A6RUH2) RecName: Full=ATP-dependent RNA helicase drs1; ... 95 2e-18
AM920431_1322(AM920431|pid:none) Penicillium chrysogenum Wiscons... 95 2e-18
(A1CNV8) RecName: Full=ATP-dependent RNA helicase drs1; ... 94 6e-18
(A7F4L5) RecName: Full=ATP-dependent RNA helicase drs1; ... 93 1e-17
(P0C2N8) RecName: Full=ATP-dependent RNA helicase drs-1; ... 92 1e-17
CR954213_215(CR954213|pid:none) Ostreococcus tauri strain OTTH05... 92 2e-17
FN392321_754(FN392321|pid:none) Pichia pastoris GS115 chromosome... 92 2e-17
CU633900_249(CU633900|pid:none) Podospora anserina genomic DNA c... 91 3e-17
(A2QAX7) RecName: Full=ATP-dependent RNA helicase drs1; ... 91 5e-17
(A4QYM6) RecName: Full=ATP-dependent RNA helicase DRS1; ... 91 5e-17
CP000601_104(CP000601|pid:none) Ostreococcus lucimarinus CCE9901... 90 7e-17
(Q1E2B2) RecName: Full=ATP-dependent RNA helicase DRS1; ... 90 7e-17
AE014188_490(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 88 3e-16
AP007151_1052(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 88 3e-16
(A1D1R8) RecName: Full=ATP-dependent RNA helicase drs1; ... 87 5e-16
CP000497_674(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 86 1e-15
(A3LSN3) RecName: Full=ATP-dependent RNA helicase DRS1; ... 86 1e-15
(A7TJM9) RecName: Full=ATP-dependent RNA helicase DRS1; ... 85 2e-15
(Q4I830) RecName: Full=ATP-dependent RNA helicase DRS1; ... 84 4e-15
CP001327_343(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 83 8e-15
(Q6FW42) RecName: Full=ATP-dependent RNA helicase DRS1; ... 83 1e-14
(Q6BTL5) RecName: Full=ATP-dependent RNA helicase DRS1; ... 82 2e-14
(A5DKW3) RecName: Full=ATP-dependent RNA helicase DRS1; ... 82 2e-14
(Q09903) RecName: Full=ATP-dependent RNA helicase drs1; ... 80 6e-14
BX538353_46(BX538353|pid:none) Cryptosporidium parvum chromosome... 80 7e-14
(P32892) RecName: Full=ATP-dependent RNA helicase DRS1; ... 80 9e-14
CU928166_128(CU928166|pid:none) Kluyveromyces thermotolerans str... 80 9e-14
AL161544_22(AL161544|pid:none) Arabidopsis thaliana DNA chromoso... 76 1e-12
(A5DY34) RecName: Full=ATP-dependent RNA helicase DRS1; ... 75 2e-12
CR940353_707(CR940353|pid:none) Theileria annulata strain Ankara... 74 4e-12
(Q5ACK7) RecName: Full=ATP-dependent RNA helicase DRS1; ... 74 5e-12
AY915675_1(AY915675|pid:none) Schistosoma japonicum SJCHGC08567 ... 66 1e-09
CT005272_190(CT005272|pid:none) Leishmania major strain Friedlin... 65 2e-09
(Q55BR9) RecName: Full=Probable ATP-dependent RNA helicase ddx49... 64 4e-09
AM494972_204(AM494972|pid:none) Leishmania braziliensis chromoso... 64 4e-09
AM502254_438(AM502254|pid:none) Leishmania infantum chromosome 36. 63 1e-08
(Q2H1Q8) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 62 3e-08
(Q0UK12) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 61 3e-08
(Q02748) RecName: Full=Eukaryotic initiation factor 4A; ... 61 5e-08
CP001327_185(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 61 5e-08
(Q5KBE2) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 60 6e-08
(A7EML8) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 60 6e-08
(A7TT88) RecName: Full=ATP-dependent RNA helicase ROK1; ... 60 8e-08
AM910996_684(AM910996|pid:none) Plasmodium knowlesi strain H chr... 60 8e-08
AJ719824_1(AJ719824|pid:none) Gallus gallus mRNA for hypothetica... 60 1e-07
T23922(T23922) hypothetical protein R05D11.4 - Caenorhabditis el... 60 1e-07
CP001298_2663(CP001298|pid:none) Methylobacterium chloromethanic... 60 1e-07
CP000450_1616(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 59 1e-07
(Q6FNK8) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 59 1e-07
CP000592_69(CP000592|pid:none) Ostreococcus lucimarinus CCE9901 ... 59 2e-07
CU638744_755(CU638744|pid:none) Podospora anserina genomic DNA c... 59 2e-07
AE017321_704(AE017321|pid:none) Wolbachia endosymbiont strain TR... 59 2e-07
BC095776_1(BC095776|pid:none) Danio rerio zgc:112350, mRNA (cDNA... 59 2e-07
CP000721_2740(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 59 2e-07
AE005673_832(AE005673|pid:none) Caulobacter crescentus CB15, com... 59 2e-07
CP000806_4432(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 59 2e-07
(A7TS37) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 59 2e-07
BC044017_1(BC044017|pid:none) Xenopus laevis similar to ATP-depe... 59 2e-07
(Q7RY59) RecName: Full=ATP-dependent rRNA helicase rrp-3; ... 58 3e-07
(P34580) RecName: Full=Putative ATP-dependent RNA helicase T26G1... 58 3e-07
(P27639) RecName: Full=Eukaryotic initiation factor 4A; ... 58 3e-07
(A5DIX5) RecName: Full=ATP-dependent RNA helicase ROK1; ... 58 3e-07
U13876_4(U13876|pid:none) Caenorhabditis elegans cosmid F57B9, c... 58 3e-07
CP000743_1348(CP000743|pid:none) Methanococcus aeolicus Nankai-3... 58 3e-07
AE017262_1245(AE017262|pid:none) Listeria monocytogenes str. 4b ... 58 3e-07
DQ363488_1(DQ363488|pid:none) Ictalurus punctatus isolate SOOD12... 58 3e-07
(Q6CH58) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 58 4e-07
(A5DS77) RecName: Full=ATP-dependent RNA helicase DBP2; ... 58 4e-07
AP009510_758(AP009510|pid:none) Uncultured Termite group 1 bacte... 58 4e-07
BA000022_2588(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 58 4e-07
CP001175_1307(CP001175|pid:none) Listeria monocytogenes HCC23, c... 58 4e-07
CR954209_78(CR954209|pid:none) Ostreococcus tauri strain OTTH059... 58 4e-07
CP000943_6154(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 58 4e-07
AF1230(AF1230) ATP-dependent RNA helicase (DEAD motif) homolog l... 58 4e-07
AC138448_18(AC138448|pid:none) Medicago truncatula clone mth2-11... 57 5e-07
AJ010467_1(AJ010467|pid:none) Arabidopsis thaliana mRNA for DEAD... 57 5e-07
CP000589_75(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ... 57 5e-07
AC120983_1(AC120983|pid:none) Oryza sativa chromosome 3 BAC OSJN... 57 5e-07
AP008955_4361(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 57 5e-07
(Q6ATJ8) RecName: Full=DEAD-box ATP-dependent RNA helicase 16; ... 57 5e-07
BT046163_1(BT046163|pid:none) Drosophila melanogaster RE58551 fu... 57 5e-07
AM910996_584(AM910996|pid:none) Plasmodium knowlesi strain H chr... 57 7e-07
BC055242_1(BC055242|pid:none) Danio rerio eukaryotic translation... 57 7e-07
CT027646_1(CT027646|pid:none) Zebrafish DNA sequence from clone ... 57 7e-07
FN392320_400(FN392320|pid:none) Pichia pastoris GS115 chromosome... 57 7e-07
CP001287_4093(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 57 7e-07
CP001029_2468(CP001029|pid:none) Methylobacterium populi BJ001, ... 57 7e-07
BC124840_1(BC124840|pid:none) Xenopus laevis hypothetical protei... 57 7e-07
CP000675_2428(CP000675|pid:none) Legionella pneumophila str. Cor... 57 7e-07
AB060830_2(AB060830|pid:none) Macaca fascicularis brain cDNA clo... 57 7e-07
CR628336_2299(CR628336|pid:none) Legionella pneumophila str. Par... 57 7e-07
AF208852_1(AF208852|pid:none) Homo sapiens BM-010 mRNA, complete... 57 7e-07
BC117610_1(BC117610|pid:none) Danio rerio DEAD (Asp-Glu-Ala-Asp)... 57 7e-07
AE017354_2299(AE017354|pid:none) Legionella pneumophila subsp. p... 57 7e-07
CP001055_760(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 57 7e-07
BC015842_1(BC015842|pid:none) Homo sapiens eukaryotic translatio... 57 7e-07
DQ351284_1(DQ351284|pid:none) Sus scrofa eukaryotic translation ... 57 7e-07
BC016295_1(BC016295|pid:none) Homo sapiens eukaryotic translatio... 57 7e-07
(Q54VF1) RecName: Full=Probable ATP-dependent RNA helicase ddx56... 57 9e-07
(Q8K9H6) RecName: Full=Cold-shock DEAD box protein A homolog; ... 57 9e-07
CP000510_3019(CP000510|pid:none) Psychromonas ingrahamii 37, com... 57 9e-07
BT076534_1(BT076534|pid:none) Caligus rogercresseyi clone crog-e... 57 9e-07
(Q7L014) RecName: Full=Probable ATP-dependent RNA helicase DDX46... 57 9e-07
CP001001_3757(CP001001|pid:none) Methylobacterium radiotolerans ... 57 9e-07
AB018344_1(AB018344|pid:none) Homo sapiens mRNA for KIAA0801 pro... 57 9e-07
AK129220_1(AK129220|pid:none) Mus musculus premature mRNA for mK... 57 9e-07
BC092240_1(BC092240|pid:none) Mus musculus DEAD (Asp-Glu-Ala-Asp... 57 9e-07
AF106680_1(AF106680|pid:none) Homo sapiens RNA helicase mRNA, co... 57 9e-07
(Q569Z5) RecName: Full=Probable ATP-dependent RNA helicase DDX46... 57 9e-07
AE010299_3853(AE010299|pid:none) Methanosarcina acetivorans str.... 57 9e-07
AK291788_1(AK291788|pid:none) Homo sapiens cDNA FLJ78679 complet... 57 9e-07
BC079986_1(BC079986|pid:none) Xenopus laevis hypothetical protei... 56 1e-06
(P57453) RecName: Full=Cold-shock DEAD box protein A homolog; ... 56 1e-06
CP001601_1025(CP001601|pid:none) Corynebacterium aurimucosum ATC... 56 1e-06
(Q9Y7C4) RecName: Full=ATP-dependent RNA helicase CHR1; ... 56 1e-06
CP000934_1922(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 56 1e-06
AM412317_1765(AM412317|pid:none) Clostridium botulinum A str. AT... 56 1e-06
CR548612_174(CR548612|pid:none) Paramecium tetraurelia macronucl... 56 1e-06
CP000480_4869(CP000480|pid:none) Mycobacterium smegmatis str. MC... 56 1e-06
CU928164_3636(CU928164|pid:none) Escherichia coli IAI39 chromoso... 56 1e-06
DQ150250_1(DQ150250|pid:none) Bombyx mori translation initiation... 56 1e-06
EU016387_1(EU016387|pid:none) Trichoplusia ni clone L1103 elonga... 56 1e-06
AB195137_1(AB195137|pid:none) Nasutitermes takasagoensis Nts9-1 ... 56 1e-06
CP000083_2590(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 56 1e-06
CP000821_3842(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 56 1e-06
AM494969_65(AM494969|pid:none) Leishmania braziliensis chromosom... 56 1e-06
CP001098_542(CP001098|pid:none) Halothermothrix orenii H 168, co... 56 1e-06
AE008692_1417(AE008692|pid:none) Zymomonas mobilis subsp. mobili... 56 1e-06
(Q8SR63) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 56 1e-06
CU928180_364(CU928180|pid:none) Kluyveromyces thermotolerans str... 56 1e-06
BC121227_1(BC121227|pid:none) Xenopus tropicalis ATP-dependent, ... 56 1e-06
AF078843_1(AF078843|pid:none) Homo sapiens hqp0256 protein mRNA,... 56 1e-06
(P38712) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 56 1e-06
AM920427_1267(AM920427|pid:none) Penicillium chrysogenum Wiscons... 56 1e-06
CP000157_975(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 56 1e-06
(Q86IZ9) RecName: Full=Probable ATP-dependent RNA helicase ddx52... 56 1e-06
CP001322_2441(CP001322|pid:none) Desulfatibacillum alkenivorans ... 56 1e-06
AJ276704_1(AJ276704|pid:none) Homo sapiens mRNA for DEAD box pro... 56 1e-06
CP001349_6921(CP001349|pid:none) Methylobacterium nodulans ORS 2... 56 1e-06
CR940353_233(CR940353|pid:none) Theileria annulata strain Ankara... 56 1e-06
(A6ZSX1) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 56 1e-06
CP000431_5979(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 56 1e-06
S46713(S46713) ATP-dependent RNA helicase YHR065c [similarity] -... 56 1e-06
(Q9H0S4) RecName: Full=Probable ATP-dependent RNA helicase DDX47... 56 1e-06
(A6SFV4) RecName: Full=ATP-dependent RNA helicase dbp8; ... 56 1e-06
(Q75EW9) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 56 1e-06
(A6RW56) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 56 1e-06
CP001107_3202(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 56 1e-06
BC009379_1(BC009379|pid:none) Homo sapiens DEAD (Asp-Glu-Ala-Asp... 56 1e-06
AE017196_1113(AE017196|pid:none) Wolbachia endosymbiont of Droso... 56 1e-06
CP000099_136(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 56 1e-06
CP000382_1455(CP000382|pid:none) Clostridium novyi NT, complete ... 56 1e-06
BC006843_1(BC006843|pid:none) Mus musculus DEAD (Asp-Glu-Ala-Asp... 56 1e-06
BC091696_1(BC091696|pid:none) Rattus norvegicus DEAD (Asp-Glu-Al... 56 1e-06
AP011115_6097(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 56 1e-06
AB462951_1(AB462951|pid:none) Synthetic construct DNA, clone: pF... 56 1e-06
BC088581_1(BC088581|pid:none) Xenopus tropicalis ATP-dependent, ... 55 2e-06
AE014075_3826(AE014075|pid:none) Escherichia coli CFT073, comple... 55 2e-06
(Q8XA87) RecName: Full=Cold-shock DEAD box protein A; E... 55 2e-06
CP001104_1333(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 55 2e-06
CP000243_3526(CP000243|pid:none) Escherichia coli UTI89, complet... 55 2e-06
(P0A9P6) RecName: Full=Cold-shock DEAD box protein A; E... 55 2e-06
CP000034_3099(CP000034|pid:none) Shigella dysenteriae Sd197, com... 55 2e-06
T48731(T48731)probable translation initiation factor eIF-4A [imp... 55 2e-06
(Q5B0J9) RecName: Full=ATP-dependent RNA helicase dbp2; ... 55 2e-06
CP000509_4546(CP000509|pid:none) Nocardioides sp. JS614, complet... 55 2e-06
BA000035_1257(BA000035|pid:none) Corynebacterium efficiens YS-31... 55 2e-06
JX0314(JX0314) DEAD box protein - Klebsiella pneumoniae &L08387... 55 2e-06
AB265785_1(AB265785|pid:none) Neobenedenia girellae Ngvlg1 mRNA ... 55 2e-06
M63288_1(M63288|pid:none) E.coli deaD gene, complete cds. 55 2e-06
AE005674_3205(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 55 2e-06
CU928160_3221(CU928160|pid:none) Escherichia coli IAI1 chromosom... 55 2e-06
(Q0UZ59) RecName: Full=ATP-dependent RNA helicase DBP9; ... 55 2e-06
AP008937_209(AP008937|pid:none) Lactobacillus fermentum IFO 3956... 55 2e-06
EU894953_1(EU894953|pid:none) Escherichia coli strain TB182A ind... 55 2e-06
BC116542_1(BC116542|pid:none) Danio rerio DEAD (Asp-Glu-Ala-Asp)... 55 2e-06
BC077641_1(BC077641|pid:none) Xenopus laevis translation initiat... 55 2e-06
Y12591_1(Y12591|pid:none) X.laevis mRNA for translation initiati... 55 2e-06
AY648812_1(AY648812|pid:none) Danio rerio DEAD/H box 56 RNA heli... 55 2e-06
FN392321_659(FN392321|pid:none) Pichia pastoris GS115 chromosome... 55 2e-06
(A1D405) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 55 2e-06
Y12590_1(Y12590|pid:none) X.laevis mRNA for translation initiati... 55 2e-06
BA000028_609(BA000028|pid:none) Oceanobacillus iheyensis HTE831 ... 55 2e-06
BC084468_1(BC084468|pid:none) Xenopus tropicalis eukaryotic tran... 55 2e-06
CP000878_1086(CP000878|pid:none) Prochlorococcus marinus str. MI... 55 2e-06
BC045237_1(BC045237|pid:none) Xenopus laevis translation initiat... 55 2e-06
(Q5R6D8) RecName: Full=Probable ATP-dependent RNA helicase DDX46... 55 2e-06
(Q0CIQ3) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 55 2e-06
CP000382_121(CP000382|pid:none) Clostridium novyi NT, complete g... 55 2e-06
EF144298_1(EF144298|pid:none) Populus trichocarpa clone PX0015_H... 55 2e-06
(Q6BP45) RecName: Full=ATP-dependent RNA helicase ROK1; ... 55 2e-06
(Q6BY27) RecName: Full=ATP-dependent RNA helicase DBP2; ... 55 2e-06
(Q9P735) RecName: Full=ATP-dependent RNA helicase fal-1; ... 55 3e-06
CU928175_590(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 55 3e-06
(Q4X195) RecName: Full=ATP-dependent RNA helicase dbp2; ... 55 3e-06
(Q0DWT8) RecName: Full=DEAD-box ATP-dependent RNA helicase 1; ... 55 3e-06
(Q9Y2R4) RecName: Full=Probable ATP-dependent RNA helicase DDX52... 55 3e-06
AL954747_2041(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 55 3e-06
(Q29S22) RecName: Full=Probable ATP-dependent RNA helicase DDX47... 55 3e-06
AL009126_4037(AL009126|pid:none) Bacillus subtilis subsp. subtil... 55 3e-06
AE010300_3432(AE010300|pid:none) Leptospira interrogans serovar ... 55 3e-06
CP000653_3567(CP000653|pid:none) Enterobacter sp. 638, complete ... 55 3e-06
CP000393_3258(CP000393|pid:none) Trichodesmium erythraeum IMS101... 55 3e-06
(Q5AUL4) RecName: Full=ATP-dependent RNA helicase fal1; ... 55 3e-06
AF186181_2(AF186181|pid:none) Synechococcus PCC7002 slr0082 (slr... 55 3e-06
(A4QU31) RecName: Full=ATP-dependent RNA helicase FAL1; ... 55 3e-06
(Q2U070) RecName: Full=ATP-dependent RNA helicase dbp2; ... 55 3e-06
AM263198_1262(AM263198|pid:none) Listeria welshimeri serovar 6b ... 55 3e-06
(Q6BLU9) RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helic... 55 3e-06
AP003975_4(AP003975|pid:none) Oryza sativa Japonica Group genomi... 55 3e-06
(A3LQ55) RecName: Full=Pre-mRNA-processing ATP-dependent RNA hel... 55 3e-06
CU207211_422(CU207211|pid:none) Herminiimonas arsenicoxydans chr... 55 3e-06
(Q2GWJ5) RecName: Full=ATP-dependent RNA helicase FAL1; ... 55 3e-06
AK001652_1(AK001652|pid:none) Homo sapiens cDNA FLJ10790 fis, cl... 55 3e-06
(Q0CAS8) RecName: Full=ATP-dependent RNA helicase fal1; ... 55 3e-06
AK001245_1(AK001245|pid:none) Homo sapiens cDNA FLJ10383 fis, cl... 55 3e-06
(A5D7C1) RecName: Full=Probable ATP-dependent RNA helicase DDX52... 55 3e-06
AF077033_1(AF077033|pid:none) Homo sapiens putative ATP-dependen... 55 3e-06
(A1DGZ7) RecName: Full=ATP-dependent RNA helicase dbp2; ... 55 3e-06
CP000089_875(CP000089|pid:none) Dechloromonas aromatica RCB, com... 55 3e-06
AM920436_1518(AM920436|pid:none) Penicillium chrysogenum Wiscons... 55 3e-06
(A6QSQ0) RecName: Full=ATP-dependent RNA helicase FAL1; ... 55 3e-06
(Q4WEB4) RecName: Full=ATP-dependent RNA helicase fal1; ... 55 3e-06
CR954246_954(CR954246|pid:none) Pseudoalteromonas haloplanktis s... 55 3e-06
AM711867_1243(AM711867|pid:none) Clavibacter michiganensis subsp... 55 3e-06
AJ010840_1(AJ010840|pid:none) Homo sapiens mRNA for ATP-dependen... 55 3e-06
(A1D071) RecName: Full=ATP-dependent RNA helicase fal1; ... 55 3e-06
AK291916_1(AK291916|pid:none) Homo sapiens cDNA FLJ77346 complet... 54 4e-06
BC097566_1(BC097566|pid:none) Xenopus laevis hypothetical protei... 54 4e-06
AP009152_560(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, c... 54 4e-06
CP000825_1234(CP000825|pid:none) Prochlorococcus marinus str. MI... 54 4e-06
CR940347_812(CR940347|pid:none) Theileria annulata strain Ankara... 54 4e-06
AE014297_711(AE014297|pid:none) Drosophila melanogaster chromoso... 54 4e-06
BC048899_1(BC048899|pid:none) Danio rerio eukaryotic translation... 54 4e-06
CP000435_1024(CP000435|pid:none) Synechococcus sp. CC9311, compl... 54 4e-06
CP000551_1204(CP000551|pid:none) Prochlorococcus marinus str. AS... 54 4e-06
CP001113_3310(CP001113|pid:none) Salmonella enterica subsp. ente... 54 4e-06
S53814(S53814) DEAD box protein - slime mold (Dictyostelium disc... 54 4e-06
CU640366_733(CU640366|pid:none) Podospora anserina genomic DNA c... 54 4e-06
BA000016_1396(BA000016|pid:none) Clostridium perfringens str. 13... 54 4e-06
CR954208_313(CR954208|pid:none) Ostreococcus tauri strain OTTH05... 54 4e-06
AK080767_1(AK080767|pid:none) Mus musculus adult retina cDNA, RI... 54 4e-06
(Q54Y81) RecName: Full=ATP-dependent RNA helicase ddx23; ... 54 4e-06
X12507_1(X12507|pid:none) Mouse eIF-4AII mRNA for protein synthe... 54 4e-06
EF121976_1(EF121976|pid:none) Rattus norvegicus strain LEW ATP-d... 54 4e-06
(Q4IAA0) RecName: Full=ATP-dependent RNA helicase FAL1; ... 54 4e-06
AE017282_1484(AE017282|pid:none) Methylococcus capsulatus str. B... 54 4e-06
AC115598_49(AC115598|pid:none) Dictyostelium discoideum chromoso... 54 4e-06
AK133545_1(AK133545|pid:none) Mus musculus adult male xiphoid ca... 54 4e-06
AB0901(AB0901) ATP-dependent RNA helicase (dead-box protein) [im... 54 4e-06
AE017285_3293(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 54 4e-06
AP009049_2939(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 54 4e-06
(P26802) RecName: Full=Probable ATP-dependent RNA helicase Dbp73... 54 4e-06
AM933172_3101(AM933172|pid:none) Salmonella enterica subsp. ente... 54 4e-06
(Q8K301) RecName: Full=Probable ATP-dependent RNA helicase DDX52... 54 4e-06
AP008957_4094(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 54 4e-06
AM933173_3060(AM933173|pid:none) Salmonella enterica subsp. ente... 54 4e-06
S53813(S53813;S49262) RNA helicase - slime mold (Dictyostelium d... 54 4e-06
CU928170_296(CU928170|pid:none) Kluyveromyces thermotolerans str... 54 4e-06
(Q9Y6V7) RecName: Full=Probable ATP-dependent RNA helicase DDX49... 54 4e-06
BC072214_1(BC072214|pid:none) Xenopus laevis hypothetical protei... 54 4e-06
FN392322_194(FN392322|pid:none) Pichia pastoris GS115 chromosome... 54 6e-06
FN318289_1(FN318289|pid:none) Schistosoma japonicum isolate Anhu... 54 6e-06
CP000822_4434(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 54 6e-06
(Q4P331) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 54 6e-06
(Q4WJE9) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 54 6e-06
AP006618_4701(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 54 6e-06
BC049427_1(BC049427|pid:none) Danio rerio eukaryotic translation... 54 6e-06
(Q10055) RecName: Full=ATP-dependent RNA helicase fal1; ... 54 6e-06
(P45818) RecName: Full=ATP-dependent RNA helicase ROK1; ... 54 6e-06
CP000263_209(CP000263|pid:none) Buchnera aphidicola str. Cc (Cin... 54 6e-06
CP000388_2314(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 54 6e-06
CP001323_93(CP001323|pid:none) Micromonas sp. RCC299 chromosome ... 54 6e-06
X03039_3(X03039|pid:none) Mouse mRNA for initiation factor eIF-4... 54 7e-06
CP000588_315(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 54 7e-06
AK297916_1(AK297916|pid:none) Homo sapiens cDNA FLJ58596 complet... 54 7e-06
BT081066_1(BT081066|pid:none) Caligus clemensi clone ccle-evs-51... 54 7e-06
AK135752_1(AK135752|pid:none) Mus musculus in vitro fertilized e... 54 7e-06
DQ667140_1(DQ667140|pid:none) Callinectes sapidus eukaryotic ini... 54 7e-06
CP000116_1101(CP000116|pid:none) Thiobacillus denitrificans ATCC... 54 7e-06
X03039_2(X03039|pid:none) Mouse mRNA for initiation factor eIF-4... 54 7e-06
BC006380_1(BC006380|pid:none) Homo sapiens cDNA clone IMAGE:4099... 54 7e-06
CP000416_486(CP000416|pid:none) Lactobacillus brevis ATCC 367, c... 54 7e-06
(Q4IJ56) RecName: Full=ATP-dependent RNA helicase DBP9; ... 54 7e-06
(P60842) RecName: Full=Eukaryotic initiation factor 4A-I; ... 54 7e-06
(P29562) RecName: Full=Eukaryotic initiation factor 4A-I; ... 54 7e-06
AY891106_1(AY891106|pid:none) Synthetic construct Homo sapiens c... 54 7e-06
AY891107_1(AY891107|pid:none) Synthetic construct Homo sapiens c... 54 7e-06
AK169156_1(AK169156|pid:none) Mus musculus 17 days embryo stomac... 54 7e-06
(Q6FLF3) RecName: Full=ATP-dependent RNA helicase DBP2; ... 54 7e-06
AE016827_1950(AE016827|pid:none) Mannheimia succiniciproducens M... 54 7e-06
CP000742_1606(CP000742|pid:none) Methanococcus vannielii SB, com... 54 7e-06
AK289453_1(AK289453|pid:none) Homo sapiens cDNA FLJ78614 complet... 54 7e-06
CR940348_231(CR940348|pid:none) Theileria annulata strain Ankara... 54 7e-06
AK291971_1(AK291971|pid:none) Homo sapiens cDNA FLJ78244 complet... 54 7e-06
CP000569_569(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 54 7e-06
(Q7Y183) RecName: Full=DEAD-box ATP-dependent RNA helicase 10; ... 54 7e-06
(Q9P6N8) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 54 7e-06
CP000724_2970(CP000724|pid:none) Alkaliphilus metalliredigens QY... 54 7e-06
CT005254_13(CT005254|pid:none) Leishmania major strain Friedlin,... 54 7e-06
AK152210_1(AK152210|pid:none) Mus musculus bone marrow macrophag... 54 7e-06
(Q6BML1) RecName: Full=Pre-mRNA-processing ATP-dependent RNA hel... 53 9e-06
(A3LQW7) RecName: Full=ATP-dependent RNA helicase DBP2; ... 53 9e-06
(Q9SA27) RecName: Full=Putative DEAD-box ATP-dependent RNA helic... 53 9e-06
CP001078_1324(CP001078|pid:none) Clostridium botulinum E3 str. A... 53 9e-06
(Q5B5E7) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 53 9e-06
(A3GHW9) RecName: Full=ATP-dependent RNA helicase ROK1; ... 53 9e-06
CP000438_447(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA1... 53 9e-06
AM502233_13(AM502233|pid:none) Leishmania infantum chromosome 15. 53 9e-06
(Q5KME7) RecName: Full=Pre-mRNA-processing ATP-dependent RNA hel... 53 9e-06
AM502250_77(AM502250|pid:none) Leishmania infantum chromosome 32. 53 9e-06
DQ440212_1(DQ440212|pid:none) Aedes aegypti clone AET-2104 initi... 53 9e-06
(A6S4N4) RecName: Full=ATP-dependent RNA helicase fal1; ... 53 9e-06
AM498287_1(AM498287|pid:none) Strongylocentrotus purpuratus mRNA... 53 9e-06
EF219412_1(EF219412|pid:none) Tetrahymena thermophila Lia2p (LIA... 53 9e-06
CP000828_1632(CP000828|pid:none) Acaryochloris marina MBIC11017,... 53 9e-06
CP000471_1621(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 53 9e-06
AE004091_429(AE004091|pid:none) Pseudomonas aeruginosa PAO1, com... 53 9e-06
CP001398_1911(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 53 9e-06
CP000909_3025(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 53 9e-06
CP001103_1486(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 53 9e-06
CP001600_2932(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 53 9e-06
L19948_1(L19948|pid:none) Caenorhabditis elegans RNA helicase (g... 53 1e-05
CP000724_3631(CP000724|pid:none) Alkaliphilus metalliredigens QY... 53 1e-05
CP001083_2917(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 53 1e-05
CP000153_1937(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 53 1e-05
AP008212_1481(AP008212|pid:none) Oryza sativa (japonica cultivar... 53 1e-05
CP001581_2990(CP001581|pid:none) Clostridium botulinum A2 str. K... 53 1e-05
FM211050_25(FM211050|pid:none) Photorhabdus asymbiotica subsp. a... 53 1e-05
CP000302_2558(CP000302|pid:none) Shewanella denitrificans OS217,... 53 1e-05
CP000939_1704(CP000939|pid:none) Clostridium botulinum B1 str. O... 53 1e-05
(Q6C4D4) RecName: Full=ATP-dependent RNA helicase DBP2; ... 53 1e-05
CP000612_35(CP000612|pid:none) Desulfotomaculum reducens MI-1, c... 53 1e-05
CP000112_152(CP000112|pid:none) Desulfovibrio desulfuricans G20,... 53 1e-05
BX936438_5(BX936438|pid:none) Zebrafish DNA sequence from clone ... 53 1e-05
AP008230_3754(AP008230|pid:none) Desulfitobacterium hafniense Y5... 53 1e-05
CP001336_1574(CP001336|pid:none) Desulfitobacterium hafniense DC... 53 1e-05
CP001013_616(CP001013|pid:none) Leptothrix cholodnii SP-6, compl... 53 1e-05
CP000488_848(CP000488|pid:none) Candidatus Ruthia magnifica str.... 53 1e-05
C87818(C87818) protein glh-1 [imported] - Caenorhabditis elegans... 53 1e-05
AY821682_1(AY821682|pid:none) Carassius auratus DEAD-box RNA-dep... 53 1e-05
AM441941_4(AM441941|pid:none) Vitis vinifera contig VV78X036116.... 53 1e-05
(Q6FN65) RecName: Full=ATP-dependent RNA helicase ROK1; ... 53 1e-05
BX548174_1267(BX548174|pid:none) Prochlorococcus marinus MED4 co... 53 1e-05
AC159443_42(AC159443|pid:none) Trypanosoma brucei chromosome 5 c... 53 1e-05
CP000302_3007(CP000302|pid:none) Shewanella denitrificans OS217,... 53 1e-05
CP000949_484(CP000949|pid:none) Pseudomonas putida W619, complet... 53 1e-05
CP000233_346(CP000233|pid:none) Lactobacillus salivarius UCC118,... 53 1e-05
CP001099_605(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 53 1e-05
CP000821_3327(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 53 1e-05
(Q1E1N5) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 53 1e-05
CP000712_4796(CP000712|pid:none) Pseudomonas putida F1, complete... 53 1e-05
(Q40471) RecName: Full=Eukaryotic initiation factor 4A-9; ... 53 1e-05
(Q0DB53) RecName: Full=DEAD-box ATP-dependent RNA helicase 52A; ... 53 1e-05
U62772_1(U62772|pid:none) Caenorhabditis elegans RNA helicase (g... 53 1e-05
CP000926_4997(CP000926|pid:none) Pseudomonas putida GB-1, comple... 53 1e-05
(P34689) RecName: Full=ATP-dependent RNA helicase glh-1; ... 53 1e-05
CP000316_1497(CP000316|pid:none) Polaromonas sp. JS666, complete... 53 1e-05
CR954210_193(CR954210|pid:none) Ostreococcus tauri strain OTTH05... 53 1e-05
CR954201_492(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 53 1e-05
CP000851_3481(CP000851|pid:none) Shewanella pealeana ATCC 700345... 53 1e-05
CP000560_443(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 52 2e-05
(Q94A52) RecName: Full=DEAD-box ATP-dependent RNA helicase 2; ... 52 2e-05
AK221801_1(AK221801|pid:none) Arabidopsis thaliana mRNA for hypo... 52 2e-05
BT035159_1(BT035159|pid:none) Zea mays full-length cDNA clone ZM... 52 2e-05
(A2QAB5) RecName: Full=ATP-dependent RNA helicase rok1; ... 52 2e-05
AE004969_134(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, c... 52 2e-05
FN392321_608(FN392321|pid:none) Pichia pastoris GS115 chromosome... 52 2e-05
GM694475_1(GM694475|pid:none) Sequence 31 from Patent EP1953235.... 52 2e-05
AF428313_1(AF428313|pid:none) Arabidopsis thaliana AT3g01540/F4P... 52 2e-05
AM398681_1649(AM398681|pid:none) Flavobacterium psychrophilum JI... 52 2e-05
CP001229_1425(CP001229|pid:none) Sulfurihydrogenibium azorense A... 52 2e-05
(Q54CE0) RecName: Full=Probable ATP-dependent RNA helicase ddx17... 52 2e-05
BC075762_1(BC075762|pid:none) Danio rerio DEAD (Asp-Glu-Ala-Asp)... 52 2e-05
(A7E436) RecName: Full=ATP-dependent RNA helicase dbp8; ... 52 2e-05
AY062591_1(AY062591|pid:none) Arabidopsis thaliana RNA helicase,... 52 2e-05
(Q4P184) RecName: Full=ATP-dependent RNA helicase FAL1; ... 52 2e-05
GM694479_1(GM694479|pid:none) Sequence 35 from Patent EP1953235.... 52 2e-05
(P41380) RecName: Full=Eukaryotic initiation factor 4A-3; ... 52 2e-05
CP000436_1303(CP000436|pid:none) Haemophilus somnus 129PT, compl... 52 2e-05
CP001337_415(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 52 2e-05
AK221050_1(AK221050|pid:none) Arabidopsis thaliana mRNA for RNA ... 52 2e-05
T06824(T06824) translation initiation factor - garden pea &Y171... 52 2e-05
Z69382_20(Z69382|pid:none) S.cerevisiae 37,800 bp segment of chr... 52 2e-05
(P24783) RecName: Full=ATP-dependent RNA helicase DBP2; ... 52 2e-05
BT066065_1(BT066065|pid:none) Zea mays full-length cDNA clone ZM... 52 2e-05
AM910994_603(AM910994|pid:none) Plasmodium knowlesi strain H chr... 52 2e-05
(Q8H136) RecName: Full=DEAD-box ATP-dependent RNA helicase 14; ... 52 2e-05
(Q5KPU1) RecName: Full=ATP-dependent RNA helicase DBP8; ... 52 2e-05
CP000644_2314(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 52 2e-05
AX404864_1(AX404864|pid:none) Sequence 1 from Patent WO0226787. 52 2e-05
AY598438_1(AY598438|pid:none) Diachasmimorpha longicaudata entom... 52 2e-05
AE009442_143(AE009442|pid:none) Xylella fastidiosa Temecula1, co... 52 2e-05
CP000656_2207(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 52 2e-05
CP000384_3950(CP000384|pid:none) Mycobacterium sp. MCS, complete... 52 2e-05
(Q6CDS6) RecName: Full=ATP-dependent RNA helicase ROK1; ... 52 2e-05
CP000102_1186(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 52 2e-05
(Q56X76) RecName: Full=DEAD-box ATP-dependent RNA helicase 39; ... 52 2e-05
EU016567_30(EU016567|pid:none) Uncultured marine microorganism H... 52 2e-05
AE003849_192(AE003849|pid:none) Xylella fastidiosa 9a5c, complet... 52 2e-05
CP000009_88(CP000009|pid:none) Gluconobacter oxydans 621H, compl... 52 2e-05
(Q9P7C7) RecName: Full=Pre-mRNA-processing ATP-dependent RNA hel... 52 2e-05
AE014299_3677(AE014299|pid:none) Shewanella oneidensis MR-1, com... 52 2e-05
BT000795_1(BT000795|pid:none) Arabidopsis thaliana putative RNA ... 52 2e-05
AP007281_235(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D... 52 2e-05
(P96614) RecName: Full=DEAD-box ATP-dependent RNA helicase cshA;... 52 2e-05
CP000614_2376(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 52 2e-05
FN357367_7(FN357367|pid:none) Schistosoma mansoni genome sequenc... 52 2e-05
CU928181_98(CU928181|pid:none) Zygosaccharomyces rouxii strain C... 52 2e-05
(Q2UFL0) RecName: Full=ATP-dependent RNA helicase dbp9; ... 52 2e-05
AE002098_1360(AE002098|pid:none) Neisseria meningitidis MC58, co... 52 2e-05
(Q4X0C2) RecName: Full=ATP-dependent RNA helicase dbp9; ... 52 2e-05
BT033920_1(BT033920|pid:none) Zea mays full-length cDNA clone ZM... 52 2e-05
CU928167_331(CU928167|pid:none) Kluyveromyces thermotolerans str... 52 2e-05
CP000248_236(CP000248|pid:none) Novosphingobium aromaticivorans ... 52 2e-05
AM114193_133(AM114193|pid:none) Uncultured methanogenic archaeon... 52 2e-05
(Q6BLM5) RecName: Full=ATP-dependent RNA helicase DBP9; ... 52 2e-05
CP000422_567(CP000422|pid:none) Pediococcus pentosaceus ATCC 257... 52 2e-05
CP000269_1297(CP000269|pid:none) Janthinobacterium sp. Marseille... 52 2e-05
CP000381_1273(CP000381|pid:none) Neisseria meningitidis 053442, ... 52 2e-05
AM910987_265(AM910987|pid:none) Plasmodium knowlesi strain H chr... 52 2e-05
CP000783_3459(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 52 2e-05
(P47943) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 52 2e-05
(Q5K7L2) RecName: Full=ATP-dependent RNA helicase DBP9; ... 52 2e-05
EU960244_1(EU960244|pid:none) Zea mays clone 222826 ATP-dependen... 52 2e-05
CP000440_2346(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 52 2e-05
CP000780_643(CP000780|pid:none) Candidatus Methanoregula boonei ... 52 2e-05
(Q5KFM6) RecName: Full=ATP-dependent RNA helicase DBP2-A; ... 52 2e-05
(Q6FP38) RecName: Full=ATP-dependent RNA helicase DBP1; ... 52 2e-05
EU195919_1(EU195919|pid:none) Phytophthora infestans putative RN... 52 2e-05
CP000813_426(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 52 2e-05
(O01836) RecName: Full=ATP-dependent RNA helicase glh-3; ... 52 2e-05
AE017346_128(AE017346|pid:none) Cryptococcus neoformans var. neo... 52 2e-05
(A1DHV3) RecName: Full=ATP-dependent RNA helicase dbp9; ... 52 2e-05
AE016822_1067(AE016822|pid:none) Leifsonia xyli subsp. xyli str.... 52 2e-05
FN357648_1(FN357648|pid:none) Schistosoma mansoni genome sequenc... 52 2e-05
AB047381_1(AB047381|pid:none) Hydra magnipapillata mRNA for PL10... 52 2e-05
CP000680_418(CP000680|pid:none) Pseudomonas mendocina ymp, compl... 52 2e-05
CP000931_3556(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 52 2e-05
(Q9C8J1) RecName: Full=DEAD-box ATP-dependent RNA helicase 34; ... 52 2e-05
BT081126_1(BT081126|pid:none) Caligus clemensi clone ccle-evs-51... 52 3e-05
(A1CR32) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 52 3e-05
CP000076_5708(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 52 3e-05
CP001341_2714(CP001341|pid:none) Arthrobacter chlorophenolicus A... 52 3e-05
BT070296_1(BT070296|pid:none) Picea sitchensis clone WS02718_K14... 52 3e-05
CP000910_906(CP000910|pid:none) Renibacterium salmoninarum ATCC ... 52 3e-05
AM260525_831(AM260525|pid:none) Bartonella tribocorum CIP 105476... 52 3e-05
CP001108_703(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 52 3e-05
(Q6C799) RecName: Full=ATP-dependent RNA helicase DBP8; ... 52 3e-05
CT573326_4678(CT573326|pid:none) Pseudomonas entomophila str. L4... 52 3e-05
AB451382_1(AB451382|pid:none) Homo sapiens DDX5 mRNA for ATP-dep... 52 3e-05
(Q7SBC6) RecName: Full=ATP-dependent RNA helicase dbp-2; ... 52 3e-05
CP001616_1051(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 52 3e-05
CP001102_1238(CP001102|pid:none) Candidatus Amoebophilus asiatic... 52 3e-05
CP001052_1212(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 52 3e-05
AM456215_2(AM456215|pid:none) Vitis vinifera contig VV78X025685.... 52 3e-05
(Q75AE1) RecName: Full=ATP-dependent RNA helicase ROK1; ... 52 3e-05
AM181176_5603(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 52 3e-05
AE016853_4945(AE016853|pid:none) Pseudomonas syringae pv. tomato... 52 3e-05
AC146793_11(AC146793|pid:none) Medicago truncatula clone mth2-10... 52 3e-05
CP000075_458(CP000075|pid:none) Pseudomonas syringae pv. syringa... 52 3e-05
BT071375_1(BT071375|pid:none) Picea sitchensis clone WS0285_B05 ... 52 3e-05
DQ122921_1(DQ122921|pid:none) Chlamydomonas incerta eukaryotic t... 52 3e-05
(A4QSS5) RecName: Full=ATP-dependent RNA helicase DBP2; ... 52 3e-05
(Q4TVV3) RecName: Full=Probable ATP-dependent RNA helicase DDX46... 52 3e-05
(Q7SH33) RecName: Full=Pre-mRNA-processing ATP-dependent RNA hel... 52 3e-05
(Q8H0U8) RecName: Full=DEAD-box ATP-dependent RNA helicase 42; ... 52 3e-05
CP001277_430(CP001277|pid:none) Candidatus Hamiltonella defensa ... 52 3e-05
CP000086_975(CP000086|pid:none) Burkholderia thailandensis E264 ... 52 3e-05
CP001100_309(CP001100|pid:none) Chloroherpeton thalassium ATCC 3... 52 3e-05
AL646052_2209(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 52 3e-05
CP000094_5278(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 52 3e-05
CP000142_358(CP000142|pid:none) Pelobacter carbinolicus DSM 2380... 52 3e-05
BX640452_7(BX640452|pid:none) Bordetella bronchiseptica strain R... 52 3e-05
CP000109_2006(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 52 3e-05
EF085097_1(EF085097|pid:none) Picea sitchensis clone WS0299_C11 ... 52 3e-05
AB236772_1(AB236772|pid:none) Trifolium pratense RNA for putativ... 52 3e-05
AC174377_27(AC174377|pid:none) Medicago truncatula clone mth2-57... 52 3e-05

>(Q54TJ4) RecName: Full=Probable ATP-dependent RNA helicase ddx27;
EC=3.6.1.-; AltName: Full=DEAD box protein 27;
Length = 783

Score = 359 bits (921), Expect = 6e-98
Identities = 184/213 (86%), Positives = 184/213 (86%)
Frame = +2

Query: 134 TVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSVSQ 313
TVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSVSQ
Sbjct: 507 TVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSVSQ 566

Query: 314 DNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPKVWYKT 493
DNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPKVWYKT
Sbjct: 567 DNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPKVWYKT 626

Query: 494 KQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIKKLKQKKDPYYGLSRKXXXXX 673
KQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIKKLKQKKDPYYGLSRK
Sbjct: 627 KQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIKKLKQKKDPYYGLSRKQRRHR 686

Query: 674 XXXXXXXXXXXXXXXXXXXXXXXXNEEIDSGKM 772
NEEIDSGKM
Sbjct: 687 QFKEEFEREQQEERKRKGGDDGDDNEEIDSGKM 719

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 894,560,558
Number of extensions: 13544284
Number of successful extensions: 54262
Number of sequences better than 10.0: 3145
Number of HSP's gapped: 54090
Number of HSP's successfully gapped: 3158
Length of query: 258
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 132
Effective length of database: 643,374,430
Effective search space: 84925424760
Effective search space used: 84925424760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.63 gvh: 0.27 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.08
nuc: 0.33 erl: 0.00 erm: 0.20 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for Contig-U12463-1 is nuc

VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0