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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12462-1
Contig ID Contig-U12462-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12462-1 (Contig-U12462-1Q) /CSM_Contig/Contig-U12462-1Q.Seq.d
AATTATCCAATTTAAAATAAAATGAGTAATAAATTAAGTGGAATTTATTC
AGCTTTAGATTCTGGTAATAATAAACAATCATTAAAATTATGTAATGCAC
TTTTAACAAAAAAGAAGGATGAAAATACAAATATTGTCAAAGTTTTAAAA
GCAATTACATTGATTAAATTGGGTGAAAATGAAGAGGCAATTAAATGTGC
AGATGAAGTTGCATTCATTGGACACTATAATGAAACTTTATTATCAAATT
TAAATTACTTTTATAAATCAGTTCAACAAGGATACAAAATGACCAAAGTT
TACGAAGCATCAGTTAAAGCCTATCCAAAGAACGAAAATCTAGCAGAAGG
TTTATTTTTAGCATATGCAAAGGTTAGAGATTATAAACAACAACAACAAG
TCATACTAGATTTACAAAAGAATTTCCCATCTCATCAACATAGTCTTTGG
TATTTAATGACCATTTTATCGATGGTTCATGACAACCCTTCAAACCAACT
CTTTATTGGTTTATCACAAAAGTTAGCAGAGAAATTAGTAGAAGAAGGTA
AAATCAAAACAAGTGAACATCTTTATATGTATGAAACCGTATTG------
----TTCTTTTACAATTAACCTATCGTAGACAAATTTTTAAAATATTCTA
TATTTAATTTCAACTCAATCACCCAATTGATTTAAATCAATTTAATCAAT
TATTAATTTCACTTGAATCAACTACAACTAAATTAAATTCTATCAATTCT
CATAAAATTGATAATTTAACTCGTATTTCAACTTTAAATAATTTTAAATT
ATTAAATTTAATTTTAAATTTTATTAAAAGAATTTAATGAAGAGAAATTA
AAACAAGTTAAAGAATTATTAGAATTAATTAATAATGAAATTACTGAAAT
TGTTAAAGTTTTAAGTGATAATATTAGAGAATCTGTTGTTTTAGGTAATA
GTTTGAATAGTTTATCTAGATCAAGTCGTATGGTTGTATCAAGTTTTATT
GAACCAATCACTTGGTTCTCATTCATAGCATTATTAGTGAACTCTGCATT
ACCAGGTAAAAGAGCAAAGAAGAAAGAAGAATATCATACTACTATTCGCA
CAGATTTAGAAACATTAGTTAAAAAACTTTCTGATGATTCTTTAAATTTA
TCAAATATTATTAATGAAAAATCATTATCAAAATTATCTTTAACTGAAGA
TGATAATAACAAATCAACTATTCTTGAAACTTTAAATACTCAATCAATTG
CCAAAAATGTTTCTGAAAATTCAATTAAATCAGTCACTGAATTACAAGAA
TATTTAAATTCAANAAAACTTTATTAACTTTCTCAATTAATAATACTAAT
AACACAACAAATGCCTAAATA
Gap gap included
Contig length 1361
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2640153
End point 2638871
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 4
Link to clone list U12462
List of clone(s) 

est1=VHM161F,1,524
est2=VHG210F,8,594
est3=VHM161Z,595,1327
est4=VHG210Z,747,1362
Translated Amino Acid sequence 
nypi*NKMSNKLSGIYSALDSGNNKQSLKLCNALLTKKKDENTNIVKVLKAITLIKLGEN
EEAIKCADEVAFIGHYNETLLSNLNYFYKSVQQGYKMTKVYEASVKAYPKNENLAEGLFL
AYAKVRDYKQQQQVILDLQKNFPSHQHSLWYLMTILSMVHDNPSNQLFIGLSQKLAEKLV
EEGKIKTSEHLYMYETVL---

---LLQLTYRRQIFKIFYI*fqlnhpidlnqfnqllislestttklnsinshkidnltri
stlnnfkllnlilnfikri**reikts*riirin***ny*nc*sfk**y*riccfr**fe
*fi*iksygcikfy*tnhlvlihsiiselcitr*kskeerrisyyyshrfrnis*ktf**
ffkfikyy**kiiikiifn*r***qinys*nfkysincqkcf*kfn*ish*itrifkfxk
tlltfsinntnnttna*i
Translated Amino Acid sequence (All Frames) 
Frame A:
nypi*NKMSNKLSGIYSALDSGNNKQSLKLCNALLTKKKDENTNIVKVLKAITLIKLGEN
EEAIKCADEVAFIGHYNETLLSNLNYFYKSVQQGYKMTKVYEASVKAYPKNENLAEGLFL
AYAKVRDYKQQQQVILDLQKNFPSHQHSLWYLMTILSMVHDNPSNQLFIGLSQKLAEKLV
EEGKIKTSEHLYMYETVL---

---ffyn*pivdkflkysifnfnsitqli*inliny*fhlnqlqln*ilsiliklii*lv
fql*iilny*i*f*illkefneeklkqvkellelinneiteivkvlsdniresvvlgnsl
nslsrssrmvvssfiepitwfsfiallvnsalpgkrakkkeeyhttirtdletlvkklsd
dslnlsniinekslsklslteddnnkstiletlntqsiaknvsensiksvtelqeylnsx
kly*lsqliilitqqmpk

Frame B:
iiqfkik*vin*vefiql*ilviinnh*nyvmhf*qkrrmkiqilskf*kqlh*lnwvkm
krqlnvqmklhsldtimklyyqi*itfinqfnkdtk*pkftkhqlkpiqrtki*qkvyf*
hmqrleiinnnnksy*iykrishlinivfgi**pfyrwfmttlqtnsllvyhks*qrn**
kkvkskqvnificmkpy---

---sftinls*tnf*nilylistqspn*fksi*siinft*inyn*ikfyqfs*n**fnsy
fnfk*f*iikfnfkfy*knlmkrn*nklkny*n*limkllkllkf*viilenllf*viv*
ivyldqvvwlyqvllnqslgshs*hy**tlhyqvkeqrrkkniillfaqi*kh*lknflm
il*iyqillmknhyqnyl*lkmiitnqlflkl*ilnqlpkmflkiqlnqslnykni*iqx
nfinfln**y**hnkcln

Frame C:
lsnlk*ne**ikwnlfsfrfw***tiikim*ctfnkkeg*kykycqsfksnyid*ig*k*
rgn*mcr*scihwtl**nfiikfklll*isstriqndqslrsis*slskerkssrrfifs
ickg*rl*ttttshtrftkefpisst*slvfndhfidgs*qpfkptlywfitkvsreisr
rr*nqnk*tslyv*nri---

---LLQLTYRRQIFKIFYI*fqlnhpidlnqfnqllislestttklnsinshkidnltri
stlnnfkllnlilnfikri**reikts*riirin***ny*nc*sfk**y*riccfr**fe
*fi*iksygcikfy*tnhlvlihsiiselcitr*kskeerrisyyyshrfrnis*ktf**
ffkfikyy**kiiikiifn*r***qinys*nfkysincqkcf*kfn*ish*itrifkfxk
tlltfsinntnnttna*i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12462-1 (Contig-U12462-1Q)
/CSM_Contig/Contig-U12462-1Q.Seq.d
         (1371 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12462-1 (Contig-U12462-1Q) /CSM_Contig/Conti...  1491  0.0
Contig-U10123-1 (Contig-U10123-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12527-1 (Contig-U12527-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09478-1 (Contig-U09478-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U01123-1 (Contig-U01123-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11808-1 (Contig-U11808-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U11701-1 (Contig-U11701-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U10404-1 (Contig-U10404-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U14898-1 (Contig-U14898-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U13201-1 (Contig-U13201-1Q) /CSM_Contig/Conti...    36  0.097

>Contig-U12462-1 (Contig-U12462-1Q) /CSM_Contig/Contig-U12462-1Q.Seq.d
          Length = 1371

 Score = 1491 bits (752), Expect = 0.0
 Identities = 782/782 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattatccaatttaaaataaaatgagtaataaattaagtggaatttattcagctttagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aattatccaatttaaaataaaatgagtaataaattaagtggaatttattcagctttagat 60

                                                                       
Query: 61  tctggtaataataaacaatcattaaaattatgtaatgcacttttaacaaaaaagaaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tctggtaataataaacaatcattaaaattatgtaatgcacttttaacaaaaaagaaggat 120

                                                                       
Query: 121 gaaaatacaaatattgtcaaagttttaaaagcaattacattgattaaattgggtgaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaatacaaatattgtcaaagttttaaaagcaattacattgattaaattgggtgaaaat 180

                                                                       
Query: 181 gaagaggcaattaaatgtgcagatgaagttgcattcattggacactataatgaaacttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaagaggcaattaaatgtgcagatgaagttgcattcattggacactataatgaaacttta 240

                                                                       
Query: 241 ttatcaaatttaaattacttttataaatcagttcaacaaggatacaaaatgaccaaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttatcaaatttaaattacttttataaatcagttcaacaaggatacaaaatgaccaaagtt 300

                                                                       
Query: 301 tacgaagcatcagttaaagcctatccaaagaacgaaaatctagcagaaggtttattttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tacgaagcatcagttaaagcctatccaaagaacgaaaatctagcagaaggtttattttta 360

                                                                       
Query: 361 gcatatgcaaaggttagagattataaacaacaacaacaagtcatactagatttacaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcatatgcaaaggttagagattataaacaacaacaacaagtcatactagatttacaaaag 420

                                                                       
Query: 421 aatttcccatctcatcaacatagtctttggtatttaatgaccattttatcgatggttcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatttcccatctcatcaacatagtctttggtatttaatgaccattttatcgatggttcat 480

                                                                       
Query: 481 gacaacccttcaaaccaactctttattggtttatcacaaaagttagcagagaaattagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gacaacccttcaaaccaactctttattggtttatcacaaaagttagcagagaaattagta 540

                                                                       
Query: 541 gaagaaggtaaaatcaaaacaagtgaacatctttatatgtatgaaaccgtattgnnnnnn 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaagaaggtaaaatcaaaacaagtgaacatctttatatgtatgaaaccgtattgnnnnnn 600

                                                                       
Query: 601 nnnnttcttttacaattaacctatcgtagacaaatttttaaaatattctatatttaattt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 nnnnttcttttacaattaacctatcgtagacaaatttttaaaatattctatatttaattt 660

                                                                       
Query: 661 caactcaatcacccaattgatttaaatcaatttaatcaattattaatttcacttgaatca 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caactcaatcacccaattgatttaaatcaatttaatcaattattaatttcacttgaatca 720

                                                                       
Query: 721 actacaactaaattaaattctatcaattctcataaaattgataatttaactcgtatttca 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 actacaactaaattaaattctatcaattctcataaaattgataatttaactcgtatttca 780

             
Query: 781 ac 782
           ||
Sbjct: 781 ac 782


 Score = 1021 bits (515), Expect = 0.0
 Identities = 518/518 (100%)
 Strand = Plus / Plus

                                                                        
Query: 854  caagttaaagaattattagaattaattaataatgaaattactgaaattgttaaagtttta 913
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  caagttaaagaattattagaattaattaataatgaaattactgaaattgttaaagtttta 913

                                                                        
Query: 914  agtgataatattagagaatctgttgttttaggtaatagtttgaatagtttatctagatca 973
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  agtgataatattagagaatctgttgttttaggtaatagtttgaatagtttatctagatca 973

                                                                        
Query: 974  agtcgtatggttgtatcaagttttattgaaccaatcacttggttctcattcatagcatta 1033
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  agtcgtatggttgtatcaagttttattgaaccaatcacttggttctcattcatagcatta 1033

                                                                        
Query: 1034 ttagtgaactctgcattaccaggtaaaagagcaaagaagaaagaagaatatcatactact 1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 ttagtgaactctgcattaccaggtaaaagagcaaagaagaaagaagaatatcatactact 1093

                                                                        
Query: 1094 attcgcacagatttagaaacattagttaaaaaactttctgatgattctttaaatttatca 1153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 attcgcacagatttagaaacattagttaaaaaactttctgatgattctttaaatttatca 1153

                                                                        
Query: 1154 aatattattaatgaaaaatcattatcaaaattatctttaactgaagatgataataacaaa 1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 aatattattaatgaaaaatcattatcaaaattatctttaactgaagatgataataacaaa 1213

                                                                        
Query: 1214 tcaactattcttgaaactttaaatactcaatcaattgccaaaaatgtttctgaaaattca 1273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tcaactattcttgaaactttaaatactcaatcaattgccaaaaatgtttctgaaaattca 1273

                                                                        
Query: 1274 attaaatcagtcactgaattacaagaatatttaaattcaanaaaactttattaactttct 1333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 attaaatcagtcactgaattacaagaatatttaaattcaanaaaactttattaactttct 1333

                                                  
Query: 1334 caattaataatactaataacacaacaaatgcctaaata 1371
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 caattaataatactaataacacaacaaatgcctaaata 1371


 Score = 36.2 bits (18), Expect = 0.097
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 675 aattgatttaaatcaatt 692
           ||||||||||||||||||
Sbjct: 692 aattgatttaaatcaatt 675


>Contig-U10123-1 (Contig-U10123-1Q) /CSM_Contig/Contig-U10123-1Q.Seq.d
          Length = 1007

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 860 aaagaattattagaattaattaataa 885
           ||||||||||| ||||||||||||||
Sbjct: 403 aaagaattatttgaattaattaataa 428


>Contig-U12527-1 (Contig-U12527-1Q) /CSM_Contig/Contig-U12527-1Q.Seq.d
          Length = 2026

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 879 ttaataatgaaattactgaaattg 902
           |||||||||| |||||||||||||
Sbjct: 557 ttaataatgatattactgaaattg 580


 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1161 ttaatgaaaaatcatta 1177
            |||||||||||||||||
Sbjct: 1013 ttaatgaaaaatcatta 1029


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,428
Number of Sequences: 6905
Number of extensions: 38428
Number of successful extensions: 8350
Number of sequences better than 10.0: 727
length of query: 1371
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1355
effective length of database: 5,564,391
effective search space: 7539749805
effective search space used: 7539749805
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12462-1 (Contig-U12462-1Q) /CSM_Contig/Contig-U12462-1Q.Seq.d
         (1371 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421538) Dictyostelium discoideum cDNA clone:ddv43c04, 5' ...  1152   0.0    1
(BJ425403) Dictyostelium discoideum cDNA clone:ddv55i15, 5' ...  1039   0.0    1
(BJ444206) Dictyostelium discoideum cDNA clone:ddv55i15, 3' ...   809   0.0    2
(BJ440217) Dictyostelium discoideum cDNA clone:ddv43c04, 3' ...   914   0.0    1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   4e-06  22
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   2e-05  21
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    38   0.001  11
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    42   0.002  10
(AC069057) Homo sapiens chromosome 2 clone RP11-156G21 map 2...    40   0.002  9
(AC176133) Strongylocentrotus purpuratus clone R3-28B2, WORK...    34   0.004  10
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...    34   0.004  7
(CP000029) Staphylococcus epidermidis RP62A, complete genome.      46   0.004  22
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   0.004  11
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    32   0.007  14
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         40   0.009  21
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.010  19
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.011  14
(CS468878) Sequence 69 from Patent EP1748080.                      34   0.012  15
(CS419355) Sequence 69 from Patent WO2006094836.                   34   0.012  15
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   0.015  13
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    34   0.016  11
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.025  19
(CS468877) Sequence 68 from Patent EP1748080.                      34   0.032  15
(CS419354) Sequence 68 from Patent WO2006094836.                   34   0.032  15
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g...    34   0.046  21
(AX458606) Sequence 152 from Patent WO0246454.                     32   0.052  5
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    40   0.055  10
(EJ412739) 1093012160962 Global-Ocean-Sampling_GS-28-01-01-1...    52   0.057  1
(CP000849) Rickettsia bellii OSU 85-389, complete genome.          40   0.061  18
(BJ365048) Dictyostelium discoideum cDNA clone:ddc33p19, 5' ...    36   0.064  3
(CP000727) Clostridium botulinum A str. Hall, complete genome.     36   0.068  19
(BJ369705) Dictyostelium discoideum cDNA clone:ddc51a14, 5' ...    36   0.080  3
(BJ370518) Dictyostelium discoideum cDNA clone:ddc54l09, 5' ...    36   0.087  3
(EJ575752) 1092960104559 Global-Ocean-Sampling_GS-29-01-01-1...    44   0.092  2
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    36   0.094  19
(CT030699) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.098  7
(BJ368302) Dictyostelium discoideum cDNA clone:ddc46k01, 5' ...    36   0.10   3
(BJ367351) Dictyostelium discoideum cDNA clone:ddc42j08, 5' ...    36   0.10   3
(AP003111) Homo sapiens genomic DNA, chromosome 8q23, clone:...    38   0.10   7
(BJ367699) Dictyostelium discoideum cDNA clone:ddc43m16, 5' ...    36   0.11   3
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.11   20
(BJ366607) Dictyostelium discoideum cDNA clone:ddc39h18, 5' ...    36   0.11   3
(BJ366048) Dictyostelium discoideum cDNA clone:ddc37f18, 5' ...    36   0.11   3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   0.11   13
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    34   0.12   8
(BJ443381) Dictyostelium discoideum cDNA clone:ddv52b21, 3' ...    32   0.12   3
(BJ369543) Dictyostelium discoideum cDNA clone:ddc50n22, 5' ...    36   0.12   3
(BJ394268) Dictyostelium discoideum cDNA clone:dds34p08, 5' ...    36   0.12   3
(AC187088) Zea mays chromosome 6 clone CH201-191G19; ZMMBBc0...    40   0.12   3
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   0.13   16
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.14   11
(AC181991) Myotis lucifugus clone CH235-159G12, WORKING DRAF...    40   0.14   7
(BJ367979) Dictyostelium discoideum cDNA clone:ddc44e03, 5' ...    36   0.14   3
(CS561404) Sequence 48 from Patent WO2006032472.                   46   0.15   2
(CS544114) Sequence 48 from Patent WO2006032475.                   46   0.15   2
(CS536762) Sequence 48 from Patent WO2006032500.                   46   0.15   2
(BJ366324) Dictyostelium discoideum cDNA clone:ddc38g18, 5' ...    36   0.15   3
(EA072968) Sequence 326 from patent US 7183083.                    46   0.16   2
(DI167092) Immunogenic Compositions of Staphylococcus Epider...    46   0.16   2
(CS586312) Sequence 64 from Patent WO2007001423.                   46   0.16   2
(AR886665) Sequence 326 from patent US 7060458.                    46   0.16   2
(AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   0.18   7
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    34   0.19   18
(AM661939) Entamoeba moshkovskii FIC GSS, clone mosh116b08.q1k.    34   0.19   4
(BX927312) Zebrafish DNA sequence from clone CH211-87G12 in ...    34   0.22   7
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.22   13
(AZ931174) 474.dhz62h10.s1 Saccharomyces unisporus NRRL Y-15...    50   0.22   1
(AM615036) Entamoeba invadens IP1 GSS, clone inv054h07.p1k.        50   0.22   1
(DE960938) Macropus eugenii DNA, BAC clone: MEB1-162G24_F, 5...    50   0.22   1
(DW274135) UI-S-GS1-acu-j-12-0-UI.s1 UI-S-GS1 Euprymna scolo...    50   0.22   1
(DW256475) UI-S-GB1-aan-p-01-0-UI.s1 UI-S-GB1 Euprymna scolo...    50   0.22   1
(DW251727) UI-S-GB0-aac-k-22-0-UI.s1 UI-S-GB0 Euprymna scolo...    50   0.22   1
(AC116919) Dictyostelium discoideum chromosome 2 map complem...    36   0.24   7
(AC216529) Loxodonta africana clone VMRC15-444G2, WORKING DR...    38   0.24   8
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    38   0.24   11
(AM661938) Entamoeba moshkovskii FIC GSS, clone mosh116b08.p1k.    34   0.25   4
(AX344555) Sequence 6 from Patent WO0200932.                       38   0.26   11
(CN185954) UCRCS05_0002C03_r Washington Navel Orange Stored ...    40   0.26   2
(EI286300) GM_WBc0006B01.f GM_WBc Glycine max genomic clone ...    38   0.27   2
(CT583723) Zebrafish DNA sequence from clone DKEY-33B17 in l...    40   0.32   7
(EY694349) CS00-C3-700-024-E09-CT.F Sweet orange fruit, deve...    40   0.32   2
(ER287817) 1092343580996 Global-Ocean-Sampling_GS-34-01-01-1...    42   0.33   2
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    32   0.33   15
(EY693483) CS00-C3-700-015-B02-CT.F Sweet orange fruit, deve...    40   0.33   2
(DY282607) IC0AAA57AH03RM1 CitNFL Citrus clementina cDNA 5',...    40   0.35   2
(DY273545) IC0AAA34BA07RM1 CitNFL Citrus clementina cDNA 5',...    40   0.36   2
(AC175244) Rhinolophus ferrumequinum clone VMRC7-46K20, WORK...    40   0.37   5
(BJ325552) Dictyostelium discoideum cDNA clone:dda1j07, 5' e...    36   0.38   3
(DY294570) IC0AAA85DF03RM1 CitNFL Citrus clementina cDNA 5',...    40   0.39   2
(DY289046) IC0AAA71BC06RM1 CitNFL Citrus clementina cDNA 5',...    40   0.42   2
(DY262968) IC0AAA10BH02RM1 CitNFL Citrus clementina cDNA 5',...    40   0.43   2
(DD010736) Diagnosis of known genetic Parameters within the ...    34   0.43   22
(DY278951) IC0AAA48AC04RM1 CitNFL Citrus clementina cDNA 5',...    40   0.44   2
(DY273800) IC0AAA34DG11RM1 CitNFL Citrus clementina cDNA 5',...    40   0.45   2
(DY267980) IC0AAA22DG06RM1 CitNFL Citrus clementina cDNA 5',...    40   0.45   2
(AX344560) Sequence 11 from Patent WO0200932.                      34   0.45   14
(DY279179) IC0AAA48CG05RM1 CitNFL Citrus clementina cDNA 5',...    40   0.45   2
(DY276495) IC0AAA41BC06RM1 CitNFL Citrus clementina cDNA 5',...    40   0.46   2
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    34   0.49   22
(AC116696) Mus musculus chromosome 3, clone RP24-425N23, com...    34   0.49   2

>(BJ421538) Dictyostelium discoideum cDNA clone:ddv43c04, 5' end,
           single read.
          Length = 587

 Score = 1152 bits (581), Expect = 0.0
 Identities = 584/585 (99%)
 Strand = Plus / Plus


Query: 9   aatttaaaataaaatgagtaataaattaagtggaatttattcagctttagattctggtaa 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   aatttaaaataaaatgagtaataaattaagtggaatttattcagctttagattctggtaa 61


Query: 69  taataaacaatcattaaaattatgtaatgcacttttaacaaaaaagaaggatgaaaatac 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  taataaacaatcattaaaattatgtaatgcacttttaacaaaaaagaaggatgaaaatac 121


Query: 129 aaatattgtcaaagttttaaaagcaattacattgattaaattgggtgaaaatgaagaggc 188
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 122 aaatattgtcaaagttttaaaagcaattacattaattaaattgggtgaaaatgaagaggc 181


Query: 189 aattaaatgtgcagatgaagttgcattcattggacactataatgaaactttattatcaaa 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aattaaatgtgcagatgaagttgcattcattggacactataatgaaactttattatcaaa 241


Query: 249 tttaaattacttttataaatcagttcaacaaggatacaaaatgaccaaagtttacgaagc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttaaattacttttataaatcagttcaacaaggatacaaaatgaccaaagtttacgaagc 301


Query: 309 atcagttaaagcctatccaaagaacgaaaatctagcagaaggtttatttttagcatatgc 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atcagttaaagcctatccaaagaacgaaaatctagcagaaggtttatttttagcatatgc 361


Query: 369 aaaggttagagattataaacaacaacaacaagtcatactagatttacaaaagaatttccc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaaggttagagattataaacaacaacaacaagtcatactagatttacaaaagaatttccc 421


Query: 429 atctcatcaacatagtctttggtatttaatgaccattttatcgatggttcatgacaaccc 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atctcatcaacatagtctttggtatttaatgaccattttatcgatggttcatgacaaccc 481


Query: 489 ttcaaaccaactctttattggtttatcacaaaagttagcagagaaattagtagaagaagg 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttcaaaccaactctttattggtttatcacaaaagttagcagagaaattagtagaagaagg 541


Query: 549 taaaatcaaaacaagtgaacatctttatatgtatgaaaccgtatt 593
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taaaatcaaaacaagtgaacatctttatatgtatgaaaccgtatt 586

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,743,833,119
Number of extensions: 118428433
Number of successful extensions: 12031739
Number of sequences better than 10.0: 415
Length of query: 1371
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1347
Effective length of database: 97,308,875,965
Effective search space: 131075055924855
Effective search space used: 131075055924855
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12462-1 (Contig-U12462-1Q) /CSM_Contig/Contig-U12462-1Q.Seq.d
         (1371 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q14CX7) RecName: Full=TPR repeat-containing protein C12orf30; A...   121   5e-26
AB054990_1(AB054990|pid:none) Homo sapiens nap1 mRNA for P120, c...   121   5e-26
AK052060_1(AK052060|pid:none) Mus musculus 12 days embryo eyebal...   121   7e-26
BC106182_1(BC106182|pid:none) Mus musculus RIKEN cDNA C330023M02...   121   7e-26
AK292485_1(AK292485|pid:none) Homo sapiens cDNA FLJ75187 complet...   121   7e-26
AK167405_1(AK167405|pid:none) Mus musculus 12 days pregnant adul...   121   7e-26
(Q8BWZ3) RecName: Full=TPR repeat-containing protein C12orf30 ho...   121   7e-26
BC100194_1(BC100194|pid:none) Xenopus laevis hypothetical protei...   120   1e-25
BC108816_1(BC108816|pid:none) Xenopus laevis hypothetical protei...   120   2e-25
AJ851660_1(AJ851660|pid:none) Gallus gallus mRNA for hypothetica...   120   2e-25
(Q6QI44) RecName: Full=TPR repeat-containing protein C12orf30 ho...   119   2e-25
(Q294E0) RecName: Full=Phagocyte signaling-impaired protein;          108   5e-22
(Q9VDQ7) RecName: Full=Phagocyte signaling-impaired protein;  &A...   107   1e-21
BC055480_1(BC055480|pid:none) Mus musculus RIKEN cDNA C330023M02...    98   6e-19
(Q21986) RecName: Full=TPR repeat-containing protein R13F6.10;  ...    94   9e-18
T16751(T16751)hypothetical protein R13F6.10 - Caenorhabditis ele...    94   9e-18
BC028868_1(BC028868|pid:none) Mus musculus RIKEN cDNA C330023M02...    82   3e-14
AC134927_8(AC134927|pid:none) Oryza sativa (japonica cultivar-gr...    80   2e-13
(Q17DK2) RecName: Full=Phagocyte signaling-impaired protein;           79   3e-13
BT010121_1(BT010121|pid:none) Drosophila melanogaster AT25164 fu...    72   6e-11
FN357343_5(FN357343|pid:none) Schistosoma mansoni genome sequenc...    71   8e-11
FN357343_4(FN357343|pid:none) Schistosoma mansoni genome sequenc...    71   8e-11
(Q9Y809) RecName: Full=N-terminal acetyltransferase B complex su...    61   1e-07
AK023151_1(AK023151|pid:none) Homo sapiens cDNA FLJ13089 fis, cl...    52   4e-05
AB025632_5(AB025632|pid:none) Arabidopsis thaliana genomic DNA, ...    49   3e-04
CR382139_400(CR382139|pid:none) Debaryomyces hansenii strain CBS...    43   0.031
CP000478_73(CP000478|pid:none) Syntrophobacter fumaroxidans MPOB...    42   0.052
AM494967_60(AM494967|pid:none) Leishmania braziliensis chromosom...    41   0.089
CP001287_564(CP001287|pid:none) Cyanothece sp. PCC 8801, complet...    40   0.15
CP000776_1150(CP000776|pid:none) Campylobacter hominis ATCC BAA-...    39   0.34
CP000903_2597(CP000903|pid:none) Bacillus weihenstephanensis KBA...    38   0.75
CP001080_329(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    38   0.75
CP000962_2680(CP000962|pid:none) Clostridium botulinum A3 str. L...    38   0.75
CP000099_104(CP000099|pid:none) Methanosarcina barkeri str. Fusa...    37   1.3
AE017226_1044(AE017226|pid:none) Treponema denticola ATCC 35405,...    37   1.3
AM269972_25(AM269972|pid:none) Aspergillus niger contig An01c025...    37   1.3
CP000932_762(CP000932|pid:none) Campylobacter lari RM2100, compl...    37   1.7
CP001230_1906(CP001230|pid:none) Persephonella marina EX-H1, com...    37   1.7
AE008384_2348(AE008384|pid:none) Methanosarcina mazei strain Goe...    37   2.2
AE014187_501(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.9
CP000084_369(CP000084|pid:none) Candidatus Pelagibacter ubique H...    36   2.9
AE017226_1093(AE017226|pid:none) Treponema denticola ATCC 35405,...    36   2.9
AP007155_890(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    36   2.9
CP001581_2887(CP001581|pid:none) Clostridium botulinum A2 str. K...    36   2.9
(Q9WVQ0) RecName: Full=Polyamine-modulated factor 1-binding prot...    36   3.7
AM942759_2783(AM942759|pid:none) Proteus mirabilis strain HI4320...    36   3.7
CP001614_2826(CP001614|pid:none) Teredinibacter turnerae T7901, ...    36   3.7
AM999887_953(AM999887|pid:none) Wolbachia endosymbiont of Culex ...    36   3.7
FM992692_463(FM992692|pid:none) Candida dubliniensis CD36 chromo...    35   4.9
AF396971_3(AF396971|pid:none) Mycoplasma bovis strain PG-45 isol...    35   4.9
AF162140_1(AF162140|pid:none) Mycoplasma bovis variable surface ...    35   4.9
(P46330) RecName: Full=Uncharacterized HTH-type transcriptional ...    35   4.9
CP001357_1913(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    35   4.9
CP001091_2010(CP001091|pid:none) Actinobacillus pleuropneumoniae...    35   4.9
CP000102_1280(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    35   4.9
AE010299_2248(AE010299|pid:none) Methanosarcina acetivorans str....    35   4.9
CP000931_2016(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...    35   4.9
AK145076_1(AK145076|pid:none) Mus musculus mammary gland RCB-052...    35   6.4
AL844506_172(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    35   6.4
CR940353_817(CR940353|pid:none) Theileria annulata strain Ankara...    35   6.4
CR382138_103(CR382138|pid:none) Debaryomyces hansenii strain CBS...    35   6.4
(Q12242) RecName: Full=UBA domain-containing protein RUP1;  &AY6...    35   6.4
(Q04322) RecName: Full=TBC domain-containing protein YMR192W;  &...    35   8.3
CP000728_710(CP000728|pid:none) Clostridium botulinum F str. Lan...    35   8.3

>(Q14CX7) RecName: Full=TPR repeat-containing protein C12orf30;
           AltName: Full=p120;  &BC113585_1(BC113585|pid:none)
           &BC113587_1(BC113587|pid:none)
          Length = 972

 Score =  121 bits (304), Expect = 5e-26
 Identities = 69/192 (35%), Positives = 112/192 (58%), Gaps = 4/192 (2%)
 Frame = +1

Query: 31  KLSGIYSALDSGNNKQSLKLCNALLTKKKDENTNIVKVLKAITLIKLGENEEAIKCADEV 210
           +L  IY  LD+GNNK +++  + LL K KD   +  KVLKAI L + G+ EEA   A EV
Sbjct: 14  RLRPIYDYLDNGNNKMAIQQADKLLKKHKD--LHCAKVLKAIGLQRTGKQEEAFTLAQEV 71

Query: 211 AFIGHYNETLLSNLNYFYKSVQQGYKMTKVYEASVKAYPKNENLAEGLFLAYAKVRDYKQ 390
           A +   ++  L  L   Y+ + +   +TK+YEA+VK  P +E     LF+AYA+V +YK+
Sbjct: 72  AALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKK 131

Query: 391 QQQVILDLQKNFPSHQHSLWYLMTI----LSMVHDNPSNQLFIGLSQKLAEKLVEEGKIK 558
            QQ  + L K  P + +  W +M++    +S   +N S  +F+ L++++ EK+V+E KI+
Sbjct: 132 MQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQDENLSKTMFLPLAERMVEKMVKEDKIE 191

Query: 559 TSEHLYMYETVL 594
               + +Y  +L
Sbjct: 192 AEAEVELYYMIL 203

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,502,026,090
Number of extensions: 22918352
Number of successful extensions: 69073
Number of sequences better than 10.0: 64
Number of HSP's gapped: 68948
Number of HSP's successfully gapped: 65
Length of query: 457
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 325
Effective length of database: 623,955,076
Effective search space: 202785399700
Effective search space used: 202785399700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.88  gvh: 0.32  alm: 0.47  top: 0.40  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for Contig-U12462-1 is nuc
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0