| Contig-U12456-1 |
| Contig ID |
Contig-U12456-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1447 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
2247891 |
| End point |
2246444 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
3 |
| Number of EST |
5 |
| Link to clone list |
U12456 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.30 |
| Homology vs DNA |
Query= Contig-U12456-1 (Contig-U12456-1Q) /CSM_Contig/Contig-U12456-1Q.Seq.d
(1457 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ424511) Dictyostelium discoideum cDNA clone:ddv52n16, 5' ... 1229 0.0 1
(BJ427139) Dictyostelium discoideum cDNA clone:ddv61l10, 5' ... 1039 0.0 1
(BJ446025) Dictyostelium discoideum cDNA clone:ddv61l10, 3' ... 587 0.0 3
(BJ440006) Dictyostelium discoideum cDNA clone:ddv42h11, 3' ... 581 0.0 3
(BJ421355) Dictyostelium discoideum cDNA clone:ddv42h11, 5' ... 672 0.0 1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 40 7e-04 17
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.001 14
(AC183429) Populus trichocarpa clone Pop1-49O2, complete seq... 40 0.024 9
(AX344551) Sequence 2 from Patent WO0200932. 38 0.044 14
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 0.090 14
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 32 0.15 14
(BD061520) Genome DNA of symbiotic bacteria of aphid. 48 0.19 17
(AR409405) Sequence 1 from patent US 6632935. 48 0.19 17
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 48 0.19 17
(AY863213) Smittium culisetae mitochondrion, complete genome. 38 0.20 8
(AX344560) Sequence 11 from Patent WO0200932. 42 0.26 10
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 0.36 16
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 36 0.40 16
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 0.41 17
(EL500493) 029_PFLAB1-M-P20B.AB1 Blood stage Plasmodium falc... 40 0.46 2
(AM430850) Vitis vinifera contig VV78X048696.6, whole genome... 36 0.48 3
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 0.56 14
(CU138491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.58 7
(AC149581) Medicago truncatula clone mth2-126m13, complete s... 46 0.72 6
(EL502196) B03_PFLAB1-M-PLATE20BR.AB1 Blood stage Plasmodium... 40 0.78 2
(AC087432) Homo sapiens chromosome 3 clone RP11-96G4 map 3p,... 48 0.94 1
(AC087427) Homo sapiens chromosome 3 clone RP11-176P14 map 3... 48 0.94 1
(AC179833) Strongylocentrotus purpuratus clone R3-1012E14, W... 48 0.94 1
(AC179322) Strongylocentrotus purpuratus clone R3-57D23, WOR... 48 0.94 1
(AC018497) Homo sapiens chromosome 3p clone RP11-229E21, WOR... 48 0.94 1
(AE017308) Mycoplasma mobile 163K complete genome. 34 1.1 16
(EJ474664) 1095403433274 Global-Ocean-Sampling_GS-28-01-01-1... 40 1.1 2
(AX345258) Sequence 329 from Patent WO0200928. 40 1.2 4
(ER459888) 1092963887843 Global-Ocean-Sampling_GS-35-01-01-1... 36 1.3 2
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 1.5 12
(AC212923) Populus trichocarpa clone POP006-H09, complete se... 38 1.6 5
(FF619005) G825P5219RC4.T0 Acorn worm normalized gastrula pE... 30 2.0 4
(AC173944) Callicebus moloch clone LB5-22N3, WORKING DRAFT S... 34 2.2 7
(BZ385730) EINAV18TF EI_10_12_KB Entamoeba invadens genomic ... 38 2.2 3
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 32 2.7 13
(FC715064) CAXY9193.fwd CAXY Lottia gigantea from male gonad... 34 2.8 3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 40 3.0 13
(AM473786) Vitis vinifera contig VV78X103643.2, whole genome... 36 3.2 3
(DD010735) Diagnosis of known genetic Parameters within the ... 34 3.4 14
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 3.7 19
(X52692) Xenopus laevis c-ets-1a proto-oncogene. 46 3.7 1
(BC129729) Xenopus laevis c-ets-1a proto-oncogene, mRNA (cDN... 46 3.7 1
(CU459033) Medicago truncatula chromosome 5 clone mth4-37h20... 46 3.7 1
(AC203557) Medicago truncatula clone mth2-68e20, complete se... 46 3.7 1
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 46 3.7 1
(AC150778) Medicago truncatula chromosome 2 clone mte1-58h9,... 46 3.7 1
(CU468499) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.7 1
(AC200003) Ornithorhynchus anatinus clone OA_Bb-275J8, WORKI... 46 3.7 1
(AZ522546) 208PbA11 Pb MBN #21 Plasmodium berghei genomic 3'... 46 3.7 1
(EK157102) 1095458009231 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.7 1
(AG220740) Lotus japonicus DNA, clone:LjB04d10_r. 46 3.7 1
(AG085089) Pan troglodytes DNA, clone: PTB-083A13.F. 46 3.7 1
(DY546802) AGENCOURT_71266051 NICHD_XGC_Ov1 Xenopus laevis c... 46 3.7 1
(DC078469) Xenopus laevis NBRP cDNA clone:rxl265c12, 3' end. 46 3.7 1
(DC071903) Xenopus laevis NBRP cDNA clone:rxl241k06, 3' end. 46 3.7 1
(BU909088) AGENCOURT_10486625 NICHD_XGC_Emb1 Xenopus laevis ... 46 3.7 1
(BJ638924) Xenopus laevis cDNA clone:XL200e22, 3' end. 46 3.7 1
(BJ081396) Xenopus laevis cDNA clone:XL071h22, 3' end, singl... 46 3.7 1
(BF071880) db47f09.x1 Blackshear/Soares normalized Xenopus e... 46 3.7 1
(FK003108) GLMD904TR JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 46 3.7 1
(FK003107) GLMD904TFB JCVI-SOY2 Glycine max cDNA 5', mRNA se... 46 3.7 1
(FD782942) 04ANAA3_T7_015_C03_22FEB2006_027 04ANAA3 Phaseolu... 46 3.7 1
(AM434911) Vitis vinifera contig VV78X207346.7, whole genome... 36 3.8 3
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 30 4.4 14
(BE241021) AP 49-r Pig anterior pituitary cDNA Sus scrofa cD... 36 4.6 2
(FH253957) CHO_OF3220xi12r1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 4.8 2
(EJ658174) 1092955013630 Global-Ocean-Sampling_GS-30-02-01-1... 36 4.9 2
(EK273556) 1095462267587 Global-Ocean-Sampling_GS-31-01-01-1... 38 5.2 2
(EK315487) 1095462411685 Global-Ocean-Sampling_GS-31-01-01-1... 38 5.4 2
(CU571388) Zebrafish DNA sequence from clone CH73-157A20 in ... 36 5.9 5
(AM437565) Vitis vinifera contig VV78X137375.6, whole genome... 34 6.4 5
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 32 6.6 13
(CU407199) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 6.8 2
(X95276) Plasmodium falciparum complete gene map of plastid-... 28 7.0 7
(CQ726897) Sequence 12831 from Patent WO02068579. 36 7.4 2
(GC514055) Sequence 2403 from patent US 7405291. 40 7.4 2
(GC509319) Sequence 2403 from patent US 7404958. 40 7.4 2
(GC496807) Sequence 2403 from patent US 7396532. 40 7.4 2
(GC486937) Sequence 2403 from patent US 7390493. 40 7.4 2
(GC483718) Sequence 2403 from patent US 7388090. 40 7.4 2
(GC478765) Sequence 2403 from patent US 7385047. 40 7.4 2
(EA779894) Sequence 2403 from patent US 7381816. 40 7.4 2
(EA777231) Sequence 2403 from patent US 7381815. 40 7.4 2
(EA774568) Sequence 2403 from patent US 7381814. 40 7.4 2
(EA768944) Sequence 2403 from patent US 7378514. 40 7.4 2
(EA763951) Sequence 2403 from patent US 7378258. 40 7.4 2
(EA445576) Sequence 2403 from patent US 7338786. 40 7.4 2
(EA438919) Sequence 2403 from patent US 7335494. 40 7.4 2
(EA436256) Sequence 2403 from patent US 7335493. 40 7.4 2
(EA422844) Sequence 2403 from patent US 7326544. 40 7.4 2
(EA047831) Sequence 2403 from patent US 7153952. 40 7.4 2
(EA042866) Sequence 2403 from patent US 7151171. 40 7.4 2
(EA026912) Sequence 2403 from patent US 7135560. 40 7.4 2
(EA019437) Sequence 2403 from patent US 7129340. 40 7.4 2
(EA016774) Sequence 2403 from patent US 7129339. 40 7.4 2
>(BJ424511) Dictyostelium discoideum cDNA clone:ddv52n16, 5' end,
single read.
Length = 620
Score = 1229 bits (620), Expect = 0.0
Identities = 620/620 (100%)
Strand = Plus / Plus
Query: 96 gtttataataaaggaaatatattatttacaccagacggtaacacagttattagtccggtt 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtttataataaaggaaatatattatttacaccagacggtaacacagttattagtccggtt 60
Query: 156 ggaaatagattaacagtttttgatttagtaaatcatacatcaataactttaccaattcaa 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaaatagattaacagtttttgatttagtaaatcatacatcaataactttaccaattcaa 120
Query: 216 tcaaaatataatatacgtagattagcattatcaccaaatggtcaaatattaataacatcc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaaaatataatatacgtagattagcattatcaccaaatggtcaaatattaataacatcc 180
Query: 276 gatgaatctggtcatacattaattataaatctaacaagacaagtagttttaggtgaatat 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatgaatctggtcatacattaattataaatctaacaagacaagtagttttaggtgaatat 240
Query: 336 aaattttttaaaacaccaaaatcaatattatttagtccaaatggagctattattgcaatt 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaattttttaaaacaccaaaatcaatattatttagtccaaatggagctattattgcaatt 300
Query: 396 gcagtattagaaaaagtatttttatttaaaacaccaattattcaaaaacaaccaaatcca 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcagtattagaaaaagtatttttatttaaaacaccaattattcaaaaacaaccaaatcca 360
Query: 456 ttaattcgtttatcagtatttacacataaatcagcagtaatatcaatgtgttggtcagca 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaattcgtttatcagtatttacacataaatcagcagtaatatcaatgtgttggtcagca 420
Query: 516 gattcattgaaattaatgattggatgtaagaatggtacacttttaattagacaaggtaaa 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gattcattgaaattaatgattggatgtaagaatggtacacttttaattagacaaggtaaa 480
Query: 576 tcagagagagtatcctattttcaagttaaaggatcaggtataataaattgtttctttggt 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcagagagagtatcctattttcaagttaaaggatcaggtataataaattgtttctttggt 540
Query: 636 aatgaagagagtacaattgcatatgcagttacaccaactggtttagcatcatgggattat 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatgaagagagtacaattgcatatgcagttacaccaactggtttagcatcatgggattat 600
Query: 696 aaaaccaatgaagagatgga 715
||||||||||||||||||||
Sbjct: 601 aaaaccaatgaagagatgga 620
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,494,358,446
Number of extensions: 97334571
Number of successful extensions: 8327929
Number of sequences better than 10.0: 120
Length of query: 1457
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1433
Effective length of database: 97,308,875,965
Effective search space: 139443619257845
Effective search space used: 139443619257845
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 3 |
| Homology vs Protein |
Query= Contig-U12456-1 (Contig-U12456-1Q) /CSM_Contig/Contig-U12456-1Q.Seq.d
(1457 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU928165_262(CU928165|pid:none) Kluyveromyces thermotolerans str... 138 4e-31
AM270205_6(AM270205|pid:none) Aspergillus niger contig An09c0160... 138 4e-31
FN392320_279(FN392320|pid:none) Pichia pastoris GS115 chromosome... 137 1e-30
AE017347_451(AE017347|pid:none) Cryptococcus neoformans var. neo... 137 1e-30
(Q5RFQ3) RecName: Full=Periodic tryptophan protein 2 homolog; &... 133 1e-29
(Q8BU03) RecName: Full=Periodic tryptophan protein 2 homolog; &... 133 1e-29
AK088983_1(AK088983|pid:none) Mus musculus 2 days neonate thymus... 133 1e-29
AB041855_1(AB041855|pid:none) Mus musculus wdp103 mRNA for WD-re... 133 1e-29
BC013309_1(BC013309|pid:none) Homo sapiens PWP2 periodic tryptop... 131 5e-29
CU640366_1258(CU640366|pid:none) Podospora anserina genomic DNA ... 131 7e-29
BC099005_1(BC099005|pid:none) Xenopus laevis hypothetical protei... 130 9e-29
FM992695_78(FM992695|pid:none) Candida dubliniensis CD36 chromos... 130 2e-28
(Q9C1X1) RecName: Full=Periodic tryptophan protein 2 homolog; &... 126 2e-27
(P25635) RecName: Full=Periodic tryptophan protein 2; AltName: F... 125 3e-27
CR382128_39(CR382128|pid:none) Yarrowia lipolytica strain CLIB12... 125 3e-27
AC130611_1(AC130611|pid:none) Oryza sativa (japonica cultivar-gr... 124 1e-26
AP008211_1692(AP008211|pid:none) Oryza sativa (japonica cultivar... 124 1e-26
AC132491_12(AC132491|pid:none) Oryza sativa (japonica cultivar-g... 124 1e-26
CR382123_385(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 123 2e-26
CR380957_394(CR380957|pid:none) Candida glabrata strain CBS138 c... 122 3e-26
AE016814_243(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 122 4e-26
BC047817_1(BC047817|pid:none) Danio rerio PWP2 periodic tryptoph... 121 6e-26
AY065425_1(AY065425|pid:none) Arabidopsis thaliana unknown prote... 119 3e-25
BC031787_1(BC031787|pid:none) Mus musculus PWP2 (periodic trypto... 90 1e-21
AM463781_1(AM463781|pid:none) Vitis vinifera contig VV78X121538.... 107 1e-21
CP001142_182(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 106 2e-21
BC166234_1(BC166234|pid:none) Xenopus tropicalis hypothetical pr... 85 7e-20
FN357305_27(FN357305|pid:none) Schistosoma mansoni genome sequen... 101 8e-20
T29585(T29585)hypothetical protein F55F8.3 - Caenorhabditis eleg... 100 2e-19
BT033608_1(BT033608|pid:none) Zea mays full-length cDNA clone ZM... 82 1e-18
CP001329_217(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 91 1e-16
AY808311_1(AY808311|pid:none) Schistosoma japonicum clone SJCHGC... 83 2e-14
CR940353_446(CR940353|pid:none) Theileria annulata strain Ankara... 81 1e-13
AY596303_1(AY596303|pid:none) Chlamydomonas reinhardtii unknown ... 50 3e-09
CT005257_83(CT005257|pid:none) Leishmania major strain Friedlin,... 59 6e-07
AM494955_91(AM494955|pid:none) Leishmania braziliensis chromosom... 57 1e-06
CP000881_102(CP000881|pid:none) Hemiselmis andersenii chromosome... 50 2e-04
CP000117_2838(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 50 2e-04
CP000806_3920(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 49 4e-04
CP000117_2178(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 48 8e-04
AM114193_929(AM114193|pid:none) Uncultured methanogenic archaeon... 47 0.001
CP000393_1925(CP000393|pid:none) Trichodesmium erythraeum IMS101... 47 0.001
CP000393_4067(CP000393|pid:none) Trichodesmium erythraeum IMS101... 47 0.002
AE1901(AE1901) WD-repeat containing protein [imported] - Nostoc ... 46 0.003
CP000845_57(CP000845|pid:none) Acaryochloris marina MBIC11017 pl... 45 0.009
CP000383_1007(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 44 0.011
AP007175_262(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 44 0.015
AF367178_1(AF367178|pid:none) Drosophila melanogaster chromatin ... 44 0.015
AF1890(AF1890) WD-repeat protein [imported] - Nostoc sp. (strain... 44 0.015
BA000045_2244(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 43 0.025
AC159439_36(AC159439|pid:none) Trypanosoma brucei chromosome 7 c... 43 0.025
CP000393_2151(CP000393|pid:none) Trichodesmium erythraeum IMS101... 42 0.043
CP001013_1798(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 42 0.043
AM778930_22(AM778930|pid:none) Microcystis aeruginosa PCC 7806 g... 42 0.043
AE013599_1147(AE013599|pid:none) Drosophila melanogaster chromos... 42 0.043
CP000806_1073(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 42 0.056
DQ311233_1(DQ311233|pid:none) Bombyx mori WD repeat domain 61 mR... 42 0.056
AE014297_1106(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.056
CP000089_3569(CP000089|pid:none) Dechloromonas aromatica RCB, co... 42 0.073
AM778958_177(AM778958|pid:none) Microcystis aeruginosa PCC 7806 ... 42 0.073
AH2154(AH2154) WD-repeat protein [imported] - Nostoc sp. (strain... 41 0.096
BA000045_725(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D... 41 0.13
AY080732_1(AY080732|pid:none) Arabidopsis thaliana unknown prote... 41 0.13
AC129717_13(AC129717|pid:none) Oryza sativa (japonica cultivar-g... 41 0.13
CT573213_1699(CT573213|pid:none) Frankia alni str. ACN14A chromo... 40 0.16
BC136340_1(BC136340|pid:none) Homo sapiens TAF5 RNA polymerase I... 40 0.16
AK088953_1(AK088953|pid:none) Mus musculus 2 days neonate thymus... 40 0.16
U75309_1(U75309|pid:none) Human TBP-associated factor (hTAFII100... 40 0.16
BC052268_1(BC052268|pid:none) Homo sapiens TAF5 RNA polymerase I... 40 0.16
(Q15542) RecName: Full=Transcription initiation factor TFIID sub... 40 0.16
BC156180_1(BC156180|pid:none) Synthetic construct Mus musculus c... 40 0.16
BC135427_1(BC135427|pid:none) Xenopus tropicalis transducin (bet... 40 0.21
CP000656_769(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, co... 40 0.28
CT573213_3533(CT573213|pid:none) Frankia alni str. ACN14A chromo... 40 0.28
CT573213_3638(CT573213|pid:none) Frankia alni str. ACN14A chromo... 39 0.36
(Q8C092) RecName: Full=Transcription initiation factor TFIID sub... 39 0.36
AM238664_1098(AM238664|pid:none) Streptomyces ambofaciens ATCC 2... 39 0.36
AL590445_18(AL590445|pid:none) chromosome V of strain GB-M1 of E... 39 0.48
CP001038_141(CP001038|pid:none) Nostoc punctiforme PCC 73102 pla... 39 0.48
AL078635_13(AL078635|pid:none) Amycolatopsis orientalis cosmid p... 39 0.48
CP001037_6067(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 39 0.48
AM494954_21(AM494954|pid:none) Leishmania braziliensis chromosom... 39 0.48
CP000117_3846(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 39 0.48
CP000882_18(CP000882|pid:none) Hemiselmis andersenii chromosome ... 39 0.62
CP000393_3425(CP000393|pid:none) Trichodesmium erythraeum IMS101... 39 0.62
BC168104_1(BC168104|pid:none) Xenopus tropicalis cDNA clone MGC:... 39 0.62
AL939125_246(AL939125|pid:none) Streptomyces coelicolor A3(2) co... 38 0.81
A96741(A96741) hypothetical protein F14O23.22 [imported] - Arabi... 38 0.81
AF394229_1(AF394229|pid:none) Methanosarcina mazei surface antig... 38 1.1
CP000839_184(CP000839|pid:none) Acaryochloris marina MBIC11017 p... 38 1.1
X84710_1(X84710|pid:none) M.mazei surface antigen genes orf492, ... 38 1.1
(P38011) RecName: Full=Guanine nucleotide-binding protein subuni... 38 1.1
AE008384_2470(AE008384|pid:none) Methanosarcina mazei strain Goe... 38 1.1
DQ360810_1(DQ360810|pid:none) Caenorhabditis elegans intraflagel... 38 1.1
FM992694_112(FM992694|pid:none) Candida dubliniensis CD36 chromo... 38 1.1
BA000039_488(BA000039|pid:none) Thermosynechococcus elongatus BP... 37 1.4
CP001291_1144(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 37 1.4
AG2400(AG2400) WD-repeat protein [imported] - Nostoc sp. (strain... 37 1.4
CP000117_1538(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 37 1.8
CP000316_3898(CP000316|pid:none) Polaromonas sp. JS666, complete... 37 1.8
CP000854_3359(CP000854|pid:none) Mycobacterium marinum M, comple... 37 1.8
CP001037_1432(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 37 1.8
CP001037_139(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 37 1.8
CR382138_945(CR382138|pid:none) Debaryomyces hansenii strain CBS... 37 2.4
AP007171_363(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 37 2.4
(P47492) RecName: Full=DNA primase; EC=2.7.7.-; &CP000... 37 2.4
CR382131_819(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 37 2.4
CP000473_6508(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 37 2.4
CP001344_497(CP001344|pid:none) Cyanothece sp. PCC 7425, complet... 36 3.1
FN392319_832(FN392319|pid:none) Pichia pastoris GS115 chromosome... 36 3.1
U27537_1(U27537|pid:none) Dictyostelium discoideum G beta like p... 36 3.1
CP000119_130(CP000119|pid:none) Anabaena variabilis ATCC 29413 p... 36 3.1
AE017125_1847(AE017125|pid:none) Helicobacter hepaticus ATCC 514... 36 3.1
CP000117_220(CP000117|pid:none) Anabaena variabilis ATCC 29413, ... 36 3.1
BC151760_1(BC151760|pid:none) Bos taurus intraflagellar transpor... 36 3.1
CP000553_292(CP000553|pid:none) Prochlorococcus marinus str. NAT... 36 3.1
AM270131_64(AM270131|pid:none) Aspergillus niger contig An07c013... 36 3.1
BT030584_1(BT030584|pid:none) Bos taurus intraflagellar transpor... 36 3.1
CR380949_26(CR380949|pid:none) Candida glabrata strain CBS138 ch... 36 4.0
BC087667_1(BC087667|pid:none) Rattus norvegicus intraflagellar t... 36 4.0
AM910995_420(AM910995|pid:none) Plasmodium knowlesi strain H chr... 36 4.0
AK167330_1(AK167330|pid:none) Mus musculus 15 days pregnant adul... 36 4.0
CP000117_2804(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 36 4.0
FN392321_908(FN392321|pid:none) Pichia pastoris GS115 chromosome... 36 4.0
AM920435_515(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 36 4.0
AK131115_1(AK131115|pid:none) Mus musculus mRNA for mFLJ00025 pr... 36 4.0
AF306867_1(AF306867|pid:none) Aedes triseriatus unknown mRNA. 36 4.0
(Q58D20) RecName: Full=Notchless protein homolog 1; 35 5.3
BC044710_1(BC044710|pid:none) Xenopus laevis Notchless gene homo... 35 5.3
AF326339_1(AF326339|pid:none) Aedes aegypti unknown protein i8 m... 35 5.3
(Q9NVX2) RecName: Full=Notchless protein homolog 1; &AK001320_1... 35 5.3
CU928169_567(CU928169|pid:none) Kluyveromyces thermotolerans str... 35 5.3
BC121510_1(BC121510|pid:none) Xenopus tropicalis WD repeat domai... 35 5.3
AF125254_1(AF125254|pid:none) Leishmania panamensis activated pr... 35 5.3
BC002884_1(BC002884|pid:none) Homo sapiens notchless homolog 1 (... 35 5.3
AF326340_1(AF326340|pid:none) Aedes aegypti unknown protein i8 m... 35 5.3
AK303253_1(AK303253|pid:none) Homo sapiens cDNA FLJ58655 complet... 35 5.3
(Q8VEJ4) RecName: Full=Notchless protein homolog 1; &BC018399_1... 35 5.3
AE017194_2335(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 35 5.3
BC066599_1(BC066599|pid:none) Danio rerio zgc:77217, mRNA (cDNA ... 35 5.3
AK044456_1(AK044456|pid:none) Mus musculus adult retina cDNA, RI... 35 5.3
AY064077_1(AY064077|pid:none) Aedes aegypti clone unKRc2 unknown... 35 5.3
AJ719451_1(AJ719451|pid:none) Gallus gallus mRNA for hypothetica... 35 5.3
BT021777_1(BT021777|pid:none) Bos taurus Notchless gene homolog ... 35 5.3
CP001037_247(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 35 5.3
CP001037_1947(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 35 6.9
AK170853_1(AK170853|pid:none) Mus musculus NOD-derived CD11c +ve... 35 6.9
AL603745_5(AL603745|pid:none) Mouse DNA sequence from clone RP23... 35 6.9
CP001099_1375(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,... 35 6.9
CP000393_145(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 35 6.9
BT036842_1(BT036842|pid:none) Zea mays full-length cDNA clone ZM... 35 6.9
AE017352_159(AE017352|pid:none) Cryptococcus neoformans var. neo... 35 6.9
CP000099_3340(CP000099|pid:none) Methanosarcina barkeri str. Fus... 35 6.9
CP000095_271(CP000095|pid:none) Prochlorococcus marinus str. NAT... 35 6.9
CP000807_36(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear ... 35 6.9
CU928179_838(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 35 6.9
BX293980_659(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 35 9.0
AF106576_4(AF106576|pid:none) Caenorhabditis elegans cosmid W07E... 35 9.0
EU952736_1(EU952736|pid:none) Zea mays clone 1287276 guanine nuc... 35 9.0
BX548174_221(BX548174|pid:none) Prochlorococcus marinus MED4 com... 35 9.0
BT055706_1(BT055706|pid:none) Zea mays full-length cDNA clone ZM... 35 9.0
CR378672_36(CR378672|pid:none) Photobacterium profundum SS9; seg... 35 9.0
CP001291_5177(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 35 9.0
(Q54PL2) RecName: Full=Integrator complex subunit 7 homolog; 35 9.0
>CU928165_262(CU928165|pid:none) Kluyveromyces thermotolerans strain
CBS6340 chromosome A complete sequence.
Length = 915
Score = 138 bits (348), Expect = 4e-31
Identities = 84/221 (38%), Positives = 128/221 (57%), Gaps = 8/221 (3%)
Frame = +3
Query: 57 MKFGYKFSNLLGTVYNKGNILFTPDGNTVISPVGNRLTVFDLVNHTSITLPIQSKYNIRR 236
MK ++FSNLLGTVY +GNILF+ DG +ISPVGNR++VFDLV++ S T + + NI
Sbjct: 1 MKSDFRFSNLLGTVYRQGNILFSEDGTQLISPVGNRVSVFDLVHNKSFTFEYEHRKNISC 60
Query: 237 LALSPNGQILITSDESGHTLIINLTRQVVLGEYKFFKTPKSILFSPNGAIIAIAVLEKVF 416
+AL+P G +L++ DE G +++N + VL F + + + FSP+G + A+A V
Sbjct: 61 VALNPQGTLLLSVDEDGRAILVNFRAKTVLHHLNFKEKVRDLKFSPDGKLFALACGRFVQ 120
Query: 417 LFKTPII--QKQPNPLIRLSVFT-HKSAVISMCWSADSLKLMIGCKNGTLLIRQGKSERV 587
++KTP + +Q P +R V H S +IS+ WS DS L+ K+ T I SE
Sbjct: 121 VWKTPEVAEDRQFAPFVRYRVHAGHFSDIISLTWSQDSRFLVSTSKDLTARIWSLDSEEK 180
Query: 588 SYFQVKGSG----IINCFFGNEESTIAYAVTPTG-LASWDY 695
V +G ++ FF +++ I Y V+ G + W+Y
Sbjct: 181 DLASVTFAGHRDYVMGAFFSSDQERI-YTVSKDGAVFQWEY 220
Score = 85.5 bits (210), Expect(2) = 4e-20
Identities = 38/116 (32%), Positives = 69/116 (59%)
Frame = +1
Query: 904 LNLKNYLKSLIMSIKLNEKPIIEKVFESIPFNEIQLVCQEFPIYYLKNFIQFLSGYFEKN 1083
L K YL SL+M+ +LNE+ +I +V+E++P +I+LV P+ YL ++F+ + ++
Sbjct: 726 LQEKEYLHSLVMAFRLNEEYLINRVYEAVPLKDIELVSSGLPVVYLARMLKFIGDFAMES 785
Query: 1084 HHLEFQMKWVKLISIYHGKYIKTNSLSMITSLRNLQKTITQTYNDISKVCDDNIFS 1251
HLEF + W+K + HG YI ++ + LR++Q+ I + D+ DN ++
Sbjct: 786 QHLEFNLIWIKALLSAHGHYISSHKNEFGSCLRSVQRFIGRIAKDVVAASKDNKYA 841
Score = 37.4 bits (85), Expect(2) = 4e-20
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 765 ISVSPTGRAWAVSTTEGLLIYSXXXXXXXXXXXXSIDINPDSILSEIKFKK 917
+ SPT A+A ++TEG+LIYS IDI P +++ ++ K+
Sbjct: 680 LKFSPTSNAFAAASTEGILIYSVDDSLIFDPFDLDIDITPQAVIETLQEKE 730
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,743,806,527
Number of extensions: 31714543
Number of successful extensions: 77380
Number of sequences better than 10.0: 164
Number of HSP's gapped: 77197
Number of HSP's successfully gapped: 245
Length of query: 485
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 352
Effective length of database: 620,718,517
Effective search space: 218492917984
Effective search space used: 218492917984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
3 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |