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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12451-1
Contig ID Contig-U12451-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12451-1 (Contig-U12451-1Q) /CSM_Contig/Contig-U12451-1Q.Seq.d
GAAAAAAAAATTAAACCATATTTCAAAAATTAATATAACACAATTAATAA
TAATAATAATAATAATAATAATAATAATATGAGAAAAAGAGATACATGGT
TATTATTAGTTAGTATTTTAGTTGTATTTATTTCTTTGTATAGACAAAAA
GATTATAAATTAAACTTGTTATTAGAAATACCAATTGATACAAACAATTA
TGAAAATTCTCATTATCCAAAAATAAATGAATTTTTACCATTACCAATTA
TTACAGATTTAAATGGAGATGGGTTCAATGAAAATTATATATGTTACAAA
TGATTTTAAAATCCGAATTTTAGATACAGTTACACCAAATAATATAGAGA
AATTTAGATTTGGTGTAAATGTAAATGAAAATGAAAATGAAAATGAAAAT
GATAATGACCANNNNNNNNN----------NNNNNNNNNNCTTTAGATCA
AGTAACAGTGATAGATTATCAACATTGTTTAGGGTTAATACTGGTTTGAT
TAGTTGTTTCGATACTGCATCTTTTGGTGGTAAAAAGATTTGGAGAGTTG
ATACTGGAATTCATTGGAGTAAACATTTGGAACCAAGAACTTTCCCATCA
TTACAAGTATTTTCATTTGATATTCAATCAACTCAACCATTCATTTTAGC
AATTGGTGAACAATCAATGGTAATATTAAATGAAAATGGTGAGATTTTAG
TTGATCAACAAATTTGGAATGCTGGTGAAAGTGATCCAA
Gap gap included
Contig length 729
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5847030
End point 5846327
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U12451
List of clone(s) 

est1=VHF423F,1,411
est2=VHF423Z,412,711
Translated Amino Acid sequence 
kkklnhiskinitqliiiiiiiiiii*ekeihgyy*lvf*lylflcidkkiin*tcy*ky
qliqtimkiliiqk*mnfyhyqllqi*MEMGSMKIIYVTNDFKIRILDTVTPNNIEKFRF
GVNVNENENENENDNDXXX---

---XXXFRSSNSDRLSTLFRVNTGLISCFDTASFGGKKIWRVDTGIHWSKHLEPRTFPSL
QVFSFDIQSTQPFILAIGEQSMVILNENGEILVDQQIWNAGESDP
Translated Amino Acid sequence (All Frames) 
Frame A:
ekkikpyfkn*yntinnnnnnnnnnnmrkrdtwlllvsilvvfislyrqkdyklnlllei
pidtnnyenshypkineflplpiitdlngdgfnenyicyk*f*npnfrysytk*yrei*i
wckck*k*k*k*k***pxxx---

---xxxxldqvtvidyqhclglilv*lvvsilhllvvkrfgelilefigvniwnqelshh
ykyfhlifnqlnhsf*qlvnnqw*y*mkmvrf*linkfgmlvkviq

Frame B:
kkklnhiskinitqliiiiiiiiiii*ekeihgyy*lvf*lylflcidkkiin*tcy*ky
qliqtimkiliiqk*mnfyhyqllqi*MEMGSMKIIYVTNDFKIRILDTVTPNNIEKFRF
GVNVNENENENENDNDXXX---

---xxxl*ik*q**iiniv*g*ywfd*lfrycifww*kdles*ywnsle*tfgtknfpii
tsifi*ysinstihfsnw*tingnik*kw*dfs*stnlecw*k*s

Frame C:
kkn*tifqkli*hn***********yekkrymviis*yfsciyffv*tkrl*iklvirnt
n*ykql*kfslsknk*iftitnyyrfkwrwvq*klymlqmilksef*iqlhqii*rnldl
v*m*mkmkmkmkmimtxxx---

---XXXFRSSNSDRLSTLFRVNTGLISCFDTASFGGKKIWRVDTGIHWSKHLEPRTFPSL
QVFSFDIQSTQPFILAIGEQSMVILNENGEILVDQQIWNAGESDP
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12451-1 (Contig-U12451-1Q)
/CSM_Contig/Contig-U12451-1Q.Seq.d
         (739 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12451-1 (Contig-U12451-1Q) /CSM_Contig/Conti...   593  e-169
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11270-1 (Contig-U11270-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U01540-1 (Contig-U01540-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U00469-1 (Contig-U00469-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U13824-1 (Contig-U13824-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U12421-1 (Contig-U12421-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11152-1 (Contig-U11152-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U08908-1 (Contig-U08908-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U12451-1 (Contig-U12451-1Q) /CSM_Contig/Contig-U12451-1Q.Seq.d
          Length = 739

 Score =  593 bits (299), Expect = e-169
 Identities = 299/299 (100%)
 Strand = Plus / Plus

                                                                       
Query: 441 ctttagatcaagtaacagtgatagattatcaacattgtttagggttaatactggtttgat 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttagatcaagtaacagtgatagattatcaacattgtttagggttaatactggtttgat 500

                                                                       
Query: 501 tagttgtttcgatactgcatcttttggtggtaaaaagatttggagagttgatactggaat 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagttgtttcgatactgcatcttttggtggtaaaaagatttggagagttgatactggaat 560

                                                                       
Query: 561 tcattggagtaaacatttggaaccaagaactttcccatcattacaagtattttcatttga 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattggagtaaacatttggaaccaagaactttcccatcattacaagtattttcatttga 620

                                                                       
Query: 621 tattcaatcaactcaaccattcattttagcaattggtgaacaatcaatggtaatattaaa 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattcaatcaactcaaccattcattttagcaattggtgaacaatcaatggtaatattaaa 680

                                                                      
Query: 681 tgaaaatggtgagattttagttgatcaacaaatttggaatgctggtgaaagtgatccaa 739
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaaatggtgagattttagttgatcaacaaatttggaatgctggtgaaagtgatccaa 739


 Score =  565 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tgagaaaaagagatacatggttattattagttagtattttagttgtatttatttctttgt 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  tgagaaaaagagatacatggttattattagttagtattttagttgtatttatttctttgt 139

                                                                       
Query: 140 atagacaaaaagattataaattaaacttgttattagaaataccaattgatacaaacaatt 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atagacaaaaagattataaattaaacttgttattagaaataccaattgatacaaacaatt 199

                                                                       
Query: 200 atgaaaattctcattatccaaaaataaatgaatttttaccattaccaattattacagatt 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atgaaaattctcattatccaaaaataaatgaatttttaccattaccaattattacagatt 259

                                                                       
Query: 260 taaatggagatgggttcaatgaaaattatatatgttacaaatgattttaaaatccgaatt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaatggagatgggttcaatgaaaattatatatgttacaaatgattttaaaatccgaatt 319

                                                        
Query: 320 ttagatacagttacaccaaataatatagagaaatttagatttggt 364
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttagatacagttacaccaaataatatagagaaatttagatttggt 364


 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 11 ttaaaccatatttcaaa 27
          |||||||||||||||||
Sbjct: 11 ttaaaccatatttcaaa 27


>Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Contig-U11408-1Q.Seq.d
          Length = 2056

 Score = 36.2 bits (18), Expect = 0.052
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 219 aaaaataaatgaattttt 236
           ||||||||||||||||||
Sbjct: 29  aaaaataaatgaattttt 12


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 100 ttattattagttagt 114
           |||||||||||||||
Sbjct: 334 ttattattagttagt 320


>Contig-U11270-1 (Contig-U11270-1Q) /CSM_Contig/Contig-U11270-1Q.Seq.d
          Length = 2682

 Score = 36.2 bits (18), Expect = 0.052
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 227 atgaatttttaccattac 244
           ||||||||||||||||||
Sbjct: 973 atgaatttttaccattac 956


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,931
Number of Sequences: 6905
Number of extensions: 10931
Number of successful extensions: 1191
Number of sequences better than 10.0: 123
length of query: 739
length of database: 5,674,871
effective HSP length: 16
effective length of query: 723
effective length of database: 5,564,391
effective search space: 4023054693
effective search space used: 4023054693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12451-1 (Contig-U12451-1Q) /CSM_Contig/Contig-U12451-1Q.Seq.d
         (739 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...   577   0.0    3
(BJ439659) Dictyostelium discoideum cDNA clone:ddv41n06, 3' ...   593   e-165  1
(BJ421245) Dictyostelium discoideum cDNA clone:ddv41n06, 5' ...   569   e-158  1
(DW404984) ES-N-S02-0386-W Penaeus monodon Eyestalk cDNA lib...    38   0.094  2
(DW404983) ES-N-S02-0385-W Penaeus monodon Eyestalk cDNA lib...    38   0.094  2
(FH850478) OSB_1266004xf11f1.ab1 OSB_1266 Nicotiana tabacum ...    50   0.12   1
(AC225096) Medicago truncatula chromosome 7 clone mte1-66k23...    48   0.40   4
(AC220082) Bos taurus clone CH240-361P11, WORKING DRAFT SEQU...    48   0.47   1
(FH977820) CHO_OF6823xk09f1.ab1 CHO_OF6 Nicotiana tabacum ge...    48   0.47   1
(FH682272) CHO_OF5024xk01f1.ab1 CHO_OF5 Nicotiana tabacum ge...    48   0.47   1
(FH192821) CHO_OF3029xk22f1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.47   1
(FH019250) CHO_OF457xf06r1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.47   1
(ET796104) CHO_OF662xn09r1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.47   1
(ET796043) CHO_OF662xn09f1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.47   1
(CG967451) MBEDA62TFC mth2 Medicago truncatula genomic clone...    48   0.47   1
(CG956073) MBEEH49TR mth2 Medicago truncatula genomic clone ...    48   0.47   1
(CG925307) MBEEE52TR mth2 Medicago truncatula genomic clone ...    48   0.47   1
(CG922982) MBEIK83TR mth2 Medicago truncatula genomic clone ...    48   0.47   1
(AC022360) Homo sapiens 8 BAC RP11-58O3 (Roswell Park Cancer...    34   0.99   2
(AC111724) Rattus norvegicus clone CH230-71P1, WORKING DRAFT...    46   1.4    3
(DJ387361) Diagnosis of Diseases Associated with Apoptosis.        38   1.4    2
(AX344604) Sequence 29 from Patent WO0200927.                      38   1.4    2
(AX281269) Sequence 11 from Patent WO0177164.                      38   1.4    2
(DQ842609) Viola dissecta voucher Zhou s.n. maturase K (matK...    34   1.4    3
(DQ842606) Viola violacea voucher Yoo983 maturase K (matK) g...    34   1.4    3
(DQ842604) Viola tenuicornis voucher Yoo030429 maturase K (m...    34   1.4    3
(DQ842603) Viola variegata voucher Yoo 967 maturase K (matK)...    34   1.4    3
(DQ842600) Viola philippica voucher Yoo 0305201 maturase K (...    34   1.4    3
(DQ842599) Viola seoulensis voucher Lee & Heo 3029 maturase ...    34   1.4    3
(DQ842598) Viola mandshurica voucher Yoo 916 maturase K (mat...    34   1.4    3
(DQ842597) Viola lactiflora voucher Yoo831 maturase K (matK)...    34   1.4    3
(DQ842596) Viola patrinii voucher Yoo936 maturase K (matK) g...    34   1.4    3
(DQ842591) Viola phalacrocarpa voucher Yoo0305141 maturase K...    34   1.4    3
(DQ842590) Viola x takahashii voucher Yoo030520 maturase K (...    34   1.4    3
(DQ842589) Viola albida voucher Yoo796 maturase K (matK) gen...    34   1.4    3
(DQ842588) Viola woosanensis voucher Yoo986 maturase K (matK...    34   1.4    3
(DQ842587) Viola chaerophylloides voucher Yoo823 maturase K ...    34   1.4    3
(DQ842586) Viola yazawana voucher Yoo988 maturase K (matK) g...    34   1.4    3
(DQ842585) Viola diamantiaca voucher Yoo030513 maturase K (m...    34   1.4    3
(DQ842584) Viola rossii voucher Yoo030823 maturase K (matK) ...    34   1.4    3
(DQ842583) Viola rossii voucher Yoo030514 maturase K (matK) ...    34   1.4    3
(DQ842582) Viola raddeana voucher Yoo030603 maturase K (matK...    34   1.4    3
(DQ842581) Viola verecunda voucher Yoo1129 maturase K (matK)...    34   1.4    3
(DQ842580) Viola verecunda voucher Yoo975 maturase K (matK) ...    34   1.4    3
(DQ842605) Viola selkirkii voucher Yoo030429 maturase K (mat...    34   1.5    3
(CT009488) M.truncatula DNA sequence from clone MTH2-70J8 on...    40   1.5    4
(DQ099994) Bergerocactus emoryi voucher Arias 1307 MEXU ribo...    46   1.9    1
(AF267976) Bergerocactus emoryi rpl16 gene, partial intron s...    46   1.9    1
(CU927965) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(CU466931) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(AC171655) Bos taurus clone CH240-164H16, WORKING DRAFT SEQU...    46   1.9    1
(ED770158) GM_WBb0144L21.f GM_WBb Glycine max genomic clone ...    46   1.9    1
(CB097969) ku47d10.y1 Strongyloides ratti PA female naive pA...    46   1.9    1
(FC819004) Sr_pAMT7_013j05_T7 S. ratti mixed stage pAMP Stro...    46   1.9    1
(AP009247) Candidatus Vesicomyosocius okutanii HA DNA, compl...    46   1.9    1
(CT009557) Pan troglodytes chromosome X clone PTB-010G23 map...    32   3.5    2
(AC023224) Homo sapiens chromosome 17 clone RP11-420J13 map ...    32   3.6    2
(CU137648) Zebrafish DNA sequence from clone DKEY-231K6 in l...    34   3.6    2
(CU302249) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.6    2
(CR388058) Zebrafish DNA sequence from clone DKEY-184L17 in ...    34   3.6    2
(AF274572) Homo sapiens chromosome X clone RP4-741O10 map q2...    32   3.7    2
(AL354677) Human DNA sequence *** SEQUENCING CANCELLED *** f...    32   3.7    2
(AC102985) Rattus norvegicus clone CH230-155C17, *** SEQUENC...    38   4.1    3
(Z66512) Caenorhabditis elegans Cosmid F52H3.                      32   4.2    4
(BV487162) S216P6806FC5.T0 Masuku Pan troglodytes troglodyte...    32   4.8    2
(BV481764) qos54g05.g1 Clint Pan troglodytes verus STS genom...    32   4.8    2
(AX345183) Sequence 254 from Patent WO0200928.                     34   4.9    3
(AM471871) Vitis vinifera contig VV78X113752.23, whole genom...    32   5.8    5
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   5.9    8
(AC141112) Medicago truncatula clone mth2-15m12, complete se...    40   6.0    3
(CR847792) Zebrafish DNA sequence from clone DKEY-22A20 in l...    38   6.3    5
(AL589727) Human DNA sequence from clone RP11-104N13 on chro...    36   7.1    5
(AC124706) Mus musculus BAC clone RP24-69G17 from chromosome...    44   7.4    1
(AC158501) Medicago truncatula chromosome 2 clone mth2-70b22...    44   7.4    1
(DJ387381) Diagnosis of Diseases Associated with Apoptosis.        44   7.4    1
(AX345212) Sequence 283 from Patent WO0200928.                     44   7.4    1
(AX281289) Sequence 31 from Patent WO0177164.                      44   7.4    1
(AC091271) Homo sapiens chromosome 17, clone RP11-758H9, com...    44   7.4    1
(AC087045) Homo sapiens chromosome 8, clone CTD-2342N23, com...    44   7.4    1
(AC083843) Homo sapiens chromosome 8, clone RP11-157B5, comp...    44   7.4    1
(AC129661) Rattus norvegicus clone CH230-6D22, *** SEQUENCIN...    44   7.4    1
(AC128880) Rattus norvegicus clone CH230-31N18, *** SEQUENCI...    44   7.4    1
(AC108390) Homo sapiens chromosome 8 clone RP11-2342N23 map ...    44   7.4    1
(CU896645) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.4    1
(AC087043) Homo sapiens chromosome 4 clone CTD-2655P21 map 4...    44   7.4    1
(AC074102) Homo sapiens chromosome 17 clone RP11-758H9, WORK...    44   7.4    1
(CR940352) Theileria annulata genomic DNA chromosome 3.            44   7.4    1
(AF307157) Homo sapiens chromosome 8 clone CTD-2342N23 map q...    44   7.4    1
(AC223215) Bos taurus clone CH240-426I17, WORKING DRAFT SEQU...    44   7.4    1
(AC220639) Bos taurus clone CH240-351H11, WORKING DRAFT SEQU...    44   7.4    1
(AC181877) Strongylocentrotus purpuratus clone R3-1019A9, WO...    44   7.4    1
(AC180212) Strongylocentrotus purpuratus clone R3-3006C12, W...    44   7.4    1
(AC177391) Strongylocentrotus purpuratus clone R3-53E22, WOR...    44   7.4    1
(AC172670) Bos taurus clone CH240-251C16, WORKING DRAFT SEQU...    44   7.4    1
(AC168536) Strongylocentrotus purpuratus clone R3-3091M3, WO...    44   7.4    1
(AZ236423) RPCI-23-98B7.TV RPCI-23 Mus musculus genomic clon...    44   7.4    1
(AQ953981) nbeb0053D06f CUGI Rice BAC Library (EcoRI) Oryza ...    44   7.4    1
(ET016388) MUGQ_CH252P320A11Sp6_CP598_048 CHORI-252 Vervet M...    44   7.4    1
(ER920805) MUGQ_CH252P278O09T7_CN587_033 CHORI-252 Vervet Mo...    44   7.4    1
(AQ251505) T24A4-Sp6.1 TAMU Arabidopsis thaliana genomic clo...    44   7.4    1

>(AC115598) Dictyostelium discoideum chromosome 2 map 581427-735498
             strain AX4, complete sequence.
          Length = 154071

 Score =  577 bits (291), Expect(3) = 0.0
 Identities = 297/299 (99%)
 Strand = Plus / Plus


Query: 441   ctttagatcaagtaacagtgatagattatcaacattgtttagggttaatactggtttgat 500
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 55958 ctttagatcaagtaacagtgatagattatcaacattgtttatggttaatactggtttaat 56017


Query: 501   tagttgtttcgatactgcatcttttggtggtaaaaagatttggagagttgatactggaat 560
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56018 tagttgtttcgatactgcatcttttggtggtaaaaagatttggagagttgatactggaat 56077


Query: 561   tcattggagtaaacatttggaaccaagaactttcccatcattacaagtattttcatttga 620
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56078 tcattggagtaaacatttggaaccaagaactttcccatcattacaagtattttcatttga 56137


Query: 621   tattcaatcaactcaaccattcattttagcaattggtgaacaatcaatggtaatattaaa 680
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56138 tattcaatcaactcaaccattcattttagcaattggtgaacaatcaatggtaatattaaa 56197


Query: 681   tgaaaatggtgagattttagttgatcaacaaatttggaatgctggtgaaagtgatccaa 739
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56198 tgaaaatggtgagattttagttgatcaacaaatttggaatgctggtgaaagtgatccaa 56256

 Score =  398 bits (201), Expect(3) = 0.0
 Identities = 201/201 (100%)
 Strand = Plus / Plus


Query: 80    tgagaaaaagagatacatggttattattagttagtattttagttgtatttatttctttgt 139
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53692 tgagaaaaagagatacatggttattattagttagtattttagttgtatttatttctttgt 53751


Query: 140   atagacaaaaagattataaattaaacttgttattagaaataccaattgatacaaacaatt 199
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53752 atagacaaaaagattataaattaaacttgttattagaaataccaattgatacaaacaatt 53811


Query: 200   atgaaaattctcattatccaaaaataaatgaatttttaccattaccaattattacagatt 259
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53812 atgaaaattctcattatccaaaaataaatgaatttttaccattaccaattattacagatt 53871


Query: 260   taaatggagatgggttcaatg 280
             |||||||||||||||||||||
Sbjct: 53872 taaatggagatgggttcaatg 53892

 Score =  168 bits (85), Expect(3) = 0.0
 Identities = 85/85 (100%)
 Strand = Plus / Plus


Query: 282   aaattatatatgttacaaatgattttaaaatccgaattttagatacagttacaccaaata 341
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54037 aaattatatatgttacaaatgattttaaaatccgaattttagatacagttacaccaaata 54096


Query: 342   atatagagaaatttagatttggtgt 366
             |||||||||||||||||||||||||
Sbjct: 54097 atatagagaaatttagatttggtgt 54121

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 820,879,761
Number of extensions: 51662525
Number of successful extensions: 4251146
Number of sequences better than 10.0: 109
Length of query: 739
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 715
Effective length of database: 97,308,875,965
Effective search space: 69575846314975
Effective search space used: 69575846314975
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12451-1 (Contig-U12451-1Q) /CSM_Contig/Contig-U12451-1Q.Seq.d
         (739 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_17(AC115598|pid:none) Dictyostelium discoideum chromoso...   202   9e-51
AL132980_9(AL132980|pid:none) Arabidopsis thaliana DNA chromosom...    41   0.034
EF148161_1(EF148161|pid:none) Populus trichocarpa clone WS0128_C...    37   0.85
CP000597_83(CP000597|pid:none) Ostreococcus lucimarinus CCE9901 ...    33   7.2
AP009179_1555(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ...    33   9.4
CP000569_1220(CP000569|pid:none) Actinobacillus pleuropneumoniae...    33   9.4

>AC115598_17(AC115598|pid:none) Dictyostelium discoideum chromosome
           2 map 581427-735498 strain AX4, complete sequence.
          Length = 785

 Score =  202 bits (514), Expect = 9e-51
 Identities = 98/99 (98%), Positives = 98/99 (98%)
 Frame = +1

Query: 442 FRSSNSDRLSTLFRVNTGLISCFDTASFGGKKIWRVDTGIHWSKHLEPRTFPSLQVFSFD 621
           FRSSNSDRLSTLF VNTGLISCFDTASFGGKKIWRVDTGIHWSKHLEPRTFPSLQVFSFD
Sbjct: 602 FRSSNSDRLSTLFMVNTGLISCFDTASFGGKKIWRVDTGIHWSKHLEPRTFPSLQVFSFD 661

Query: 622 IQSTQPFILAIGEQSMVILNENGEILVDQQIWNAGESDP 738
           IQSTQPFILAIGEQSMVILNENGEILVDQQIWNAGESDP
Sbjct: 662 IQSTQPFILAIGEQSMVILNENGEILVDQQIWNAGESDP 700

 Score =  115 bits (287), Expect(2) = 2e-28
 Identities = 54/68 (79%), Positives = 55/68 (80%)
 Frame = +1

Query: 79  MRKRDTWXXXXXXXXXXXXXYRQKDYKLNLLLEIPIDTNNYENSHYPKINEFLPLPIITD 258
           MRKRDTW             YRQKDYKLNLLLEIPIDTNNYENSHYPKINEFLPLPIITD
Sbjct: 1   MRKRDTWLLLVSILVVFISLYRQKDYKLNLLLEIPIDTNNYENSHYPKINEFLPLPIITD 60

Query: 259 LNGDGFNE 282
           LNGDGFN+
Sbjct: 61  LNGDGFND 68

 Score = 33.9 bits (76), Expect(2) = 2e-28
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 323 DTVTPNNIEKFRFG 364
           DTVTPNNIEKFRFG
Sbjct: 68  DTVTPNNIEKFRFG 81

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,017,434,738
Number of extensions: 21745212
Number of successful extensions: 35401
Number of sequences better than 10.0: 6
Number of HSP's gapped: 35400
Number of HSP's successfully gapped: 8
Length of query: 246
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 121
Effective length of database: 646,610,989
Effective search space: 78239929669
Effective search space used: 78239929669
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.74  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U12451-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0