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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01943-1
Contig ID Contig-U01943-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01943-1 (Contig-U01943-1Q) /CSM_Contig/Contig-U01943-1Q.Seq.d
AAAAAGATTTTATAAAACCACCATAATAAATTCTCTTGAAATTTTTTAAA
AAAGGAGATATAAATATAAATTTTTATTTAATAAAAAAAAGAATAAAATA
TTAATTTTATAAATAAAAATAAATAAAAAATAATAATTTTTTATAAAAAA
AAAAAAACCACACAAACACACAAAATTGTATAATAATAGTAACAATAATA
TAAACAAAAAAAAAAAAATTAAATAAAATGGAAGAATTAAATAAATACAA
AAGAGATCTTGAAAATATTAGCACCAAATATATTCTCTTAGAAAAGGAAA
ATAAAGAATTAAGAGAAAAGAATGATGAATTAAA----------GGGATC
TTGACAATATTAGCACCCAAATATATTCTCTTGGGAAAAGGGAAATACAG
AATTTAGAGAAACGCATGATGAATTACATAGAAAATTAACAATTCACTTA
AATAATAATGCGGTTTTAGCAGAGAAATTAGGTGTTCCCAAATCGACATA
ATGACTTTATATCACCGTCCCAAGAAAGATTCAAGGAGAAGAAGGTTTAA
TGAGAAAATATACAGCATATGTTATTGAAGTTGAAGGTAGTGAAAATAAG
AGATATCAAGTTACAAGAAGATATAAACAATTTGTATTACTTCACACACA
ATTGGTTAGAGTATTTGGAGAACATGATTTACCATCTTTACCAGCAAAAG
CAAATGGTCTCTATTTTTCAAAAGACGATCATACTGAAAAACGTAGAGTT
AATTTACAAGAATATCTTCAAAATTTAGCAAAGAATCCAGCAATCTTAAA
TTCACCAGTTTTCTATCATTTCCTTAAAAGAGACGAAGGTCAAAACATTG
ACCATGTCCCAAGTTCAACTCCATCTCATTGACTATCAAATGATTCAATT
AATTTGACCAATTCAATCAATTAAATCAAATAATATATATATACGTTTAT
AGGTGTTGGTCAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAATGGATTT
ATCCCTCATGT
Gap gap included
Contig length 1001
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3288652
End point 3289656
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 6
Link to clone list U01943
List of clone(s) 

est1=SSL421F,1,335
est2=VSF425F,2,215
est3=SSJ168E,336,970
est4=SSD647E,438,968
est5=SSL421Z,632,967
est6=SSH768Z,693,1003
Translated Amino Acid sequence 
kdfikpp**illkffkkgdininfylikkriky*fyk*k*iknnnfl*kkknhtntqnci
iivtii*TKKKKLNKMEELNKYKRDLENISTKYILLEKENKELREKNDEL---

---DLDNISTQIYSLGKREIQNLEKRMMNYIEN*qft*iimrf*qrn*vfpnrhndfisp
sqerfkekkv**eniqhmllklkvvkirdiklqedinnlyyfthnwleylenmiyhlyqq
kqmvsifqktiilknveliyknifki*qriqqs*ihqfsiislketkvktltmsqvqlhl
idyqmiqli*piqsiksnniyirl*vlvkkkkkikkkkngfiph
Translated Amino Acid sequence (All Frames) 
Frame A:
kkil*nhhnkfs*nflkkei*i*ifi**kke*ninfinknk*kiiifykkkkttqthkiv
****q*ykqkkkn*ikwkn*intkeilkilapnifs*krkikn*ekrmmn*---

---giltilapkyillgkgkyri*rna**it*kinnslk**cgfsreircsqidimtlyh
rpkkdsrrrrfnekiysicy*s*r**k*eissykki*ticitshtig*siwrt*ftifts
kskwslffkrrsy*kt*s*ftrisskfskessnlkftsflsfp*krrrskh*pcpkfnsi
sltik*fn*fdqfnqlnqiiyiyvyrcwskkkkk*kkkkmdlslm

Frame B:
krfykttiinsleif*krrykykflfnkkknkilil*ikinkk**ffikkkkphkhtkly
nnsnnninkkkkik*ngrik*iqkrs*ky*hqiyslrkgk*rikrke**ik---

---gs*qy*hpnifswekgntefrethdelhrkltihlnnnavlaeklgvpkst**lyit
vprkiqgeeglmrkytayvievegsenkryqvtrrykqfvllhtqlvrvfgehdlpslpa
kanglyfskddhtekrrvnlqeylqnlaknpailnspvfyhflkrdegqnidhvpsstps
h*lsndsinltnsin*ik*yiytfigvgqkkkknkkkkkwiypsc

Frame C:
kdfikpp**illkffkkgdininfylikkriky*fyk*k*iknnnfl*kkknhtntqnci
iivtii*TKKKKLNKMEELNKYKRDLENISTKYILLEKENKELREKNDEL---

---DLDNISTQIYSLGKREIQNLEKRMMNYIEN*qft*iimrf*qrn*vfpnrhndfisp
sqerfkekkv**eniqhmllklkvvkirdiklqedinnlyyfthnwleylenmiyhlyqq
kqmvsifqktiilknveliyknifki*qriqqs*ihqfsiislketkvktltmsqvqlhl
idyqmiqli*piqsiksnniyirl*vlvkkkkkikkkkngfiph
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01943-1 (Contig-U01943-1Q)
/CSM_Contig/Contig-U01943-1Q.Seq.d
         (1011 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01943-1 (Contig-U01943-1Q) /CSM_Contig/Conti...  1413  0.0
Contig-U14698-1 (Contig-U14698-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13898-1 (Contig-U13898-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U06674-1 (Contig-U06674-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U04549-1 (Contig-U04549-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U12564-1 (Contig-U12564-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U11893-1 (Contig-U11893-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U11147-1 (Contig-U11147-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U10946-1 (Contig-U10946-1Q) /CSM_Contig/Conti...    36  0.071

>Contig-U01943-1 (Contig-U01943-1Q) /CSM_Contig/Contig-U01943-1Q.Seq.d
          Length = 1011

 Score = 1413 bits (713), Expect = 0.0
 Identities = 743/743 (100%)
 Strand = Plus / Plus

                                                                       
Query: 219 ttaaataaaatggaagaattaaataaatacaaaagagatcttgaaaatattagcaccaaa 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttaaataaaatggaagaattaaataaatacaaaagagatcttgaaaatattagcaccaaa 278

                                                                       
Query: 279 tatattctcttagaaaaggaaaataaagaattaagagaaaagaatgatgaattaaannnn 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tatattctcttagaaaaggaaaataaagaattaagagaaaagaatgatgaattaaannnn 338

                                                                       
Query: 339 nnnnnngggatcttgacaatattagcacccaaatatattctcttgggaaaagggaaatac 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 nnnnnngggatcttgacaatattagcacccaaatatattctcttgggaaaagggaaatac 398

                                                                       
Query: 399 agaatttagagaaacgcatgatgaattacatagaaaattaacaattcacttaaataataa 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agaatttagagaaacgcatgatgaattacatagaaaattaacaattcacttaaataataa 458

                                                                       
Query: 459 tgcggttttagcagagaaattaggtgttcccaaatcgacataatgactttatatcaccgt 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgcggttttagcagagaaattaggtgttcccaaatcgacataatgactttatatcaccgt 518

                                                                       
Query: 519 cccaagaaagattcaaggagaagaaggtttaatgagaaaatatacagcatatgttattga 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cccaagaaagattcaaggagaagaaggtttaatgagaaaatatacagcatatgttattga 578

                                                                       
Query: 579 agttgaaggtagtgaaaataagagatatcaagttacaagaagatataaacaatttgtatt 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agttgaaggtagtgaaaataagagatatcaagttacaagaagatataaacaatttgtatt 638

                                                                       
Query: 639 acttcacacacaattggttagagtatttggagaacatgatttaccatctttaccagcaaa 698
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 acttcacacacaattggttagagtatttggagaacatgatttaccatctttaccagcaaa 698

                                                                       
Query: 699 agcaaatggtctctatttttcaaaagacgatcatactgaaaaacgtagagttaatttaca 758
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agcaaatggtctctatttttcaaaagacgatcatactgaaaaacgtagagttaatttaca 758

                                                                       
Query: 759 agaatatcttcaaaatttagcaaagaatccagcaatcttaaattcaccagttttctatca 818
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agaatatcttcaaaatttagcaaagaatccagcaatcttaaattcaccagttttctatca 818

                                                                       
Query: 819 tttccttaaaagagacgaaggtcaaaacattgaccatgtcccaagttcaactccatctca 878
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tttccttaaaagagacgaaggtcaaaacattgaccatgtcccaagttcaactccatctca 878

                                                                       
Query: 879 ttgactatcaaatgattcaattaatttgaccaattcaatcaattaaatcaaataatatat 938
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ttgactatcaaatgattcaattaatttgaccaattcaatcaattaaatcaaataatatat 938

                                  
Query: 939 atatacgtttataggtgttggtc 961
           |||||||||||||||||||||||
Sbjct: 939 atatacgtttataggtgttggtc 961


 Score =  127 bits (64), Expect = 3e-29
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaaaagattttataaaaccaccataataaattctcttgaaattttttaaaaaaggagata 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaaaagattttataaaaccaccataataaattctcttgaaattttttaaaaaaggagata 60

              
Query: 61 taaa 64
          ||||
Sbjct: 61 taaa 64


 Score = 95.6 bits (48), Expect = 9e-20
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                           
Query: 158 ccacacaaacacacaaaattgtataataatagtaacaataatataaac 205
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ccacacaaacacacaaaattgtataataatagtaacaataatataaac 205


 Score = 36.2 bits (18), Expect = 0.071
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 994  tggatttatccctcatgt 1011
            ||||||||||||||||||
Sbjct: 994  tggatttatccctcatgt 1011


>Contig-U14698-1 (Contig-U14698-1Q) /CSM_Contig/Contig-U14698-1Q.Seq.d
          Length = 1174

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 180 ataataatagtaacaataata 200
           |||||||||||||||||||||
Sbjct: 658 ataataatagtaacaataata 678


 Score = 40.1 bits (20), Expect = 0.005
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 180 ataataatagtaacaataatataa 203
           ||||||||||||| ||||||||||
Sbjct: 778 ataataatagtaataataatataa 801


 Score = 34.2 bits (17), Expect = 0.28
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 180 ataataatagtaacaataata 200
           ||||||||| |||||||||||
Sbjct: 640 ataataataataacaataata 660


>Contig-U13898-1 (Contig-U13898-1Q) /CSM_Contig/Contig-U13898-1Q.Seq.d
          Length = 1283

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 180  ataataatagtaacaataata 200
            |||||||||||||||||||||
Sbjct: 1086 ataataatagtaacaataata 1106


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,238
Number of Sequences: 6905
Number of extensions: 20238
Number of successful extensions: 2728
Number of sequences better than 10.0: 517
length of query: 1011
length of database: 5,674,871
effective HSP length: 16
effective length of query: 995
effective length of database: 5,564,391
effective search space: 5536569045
effective search space used: 5536569045
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.10
Homology vs DNA 
Query= Contig-U01943-1 (Contig-U01943-1Q) /CSM_Contig/Contig-U01943-1Q.Seq.d
         (1011 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90804) Dictyostelium discoideum slug cDNA, clone SSJ168.       1217   0.0    1
(AU037444) Dictyostelium discoideum slug cDNA, clone SSD647.      896   0.0    2
(AU038739) Dictyostelium discoideum slug cDNA, clone SSL421.      636   e-178  1
(AU038477) Dictyostelium discoideum slug cDNA, clone SSH768.      515   e-146  2
(BX640498) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.100  5
(AC215475) Solanum lycopersicum chromosome 2 clone C02SLm002...    34   0.48   5
(AM484588) Vitis vinifera contig VV78X054331.3, whole genome...    38   1.6    2
(EI824135) POTIS87TR Solanum tuberosum RHPOTKEY BAC ends Sol...    42   2.1    2
(EB493843) 1099435177399 12-DrosW-norm-1P5Kb Drosophila will...    38   2.1    2
(ER810354) POTM265TF Solanum tuberosum RHPOTKEY BAC ends Sol...    42   2.2    2
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    34   2.5    9
(EB455245) 1099341357303 12-DrosW-std-1P6Kb Drosophila willi...    38   2.6    2
(AC154232) Mus musculus BAC clone RP24-340J3 from chromosome...    46   2.6    1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    46   2.6    1
(CU462974) S.lycopersicum DNA sequence from clone LE_HBa-21K...    46   2.6    1
(AR584244) Sequence 1 from patent US 6797466.                      46   2.6    1
(AR271569) Sequence 1 from patent US 6503729.                      46   2.6    1
(AL513320) Human DNA sequence from clone RP11-46F15 on chrom...    46   2.6    1
(CU062556) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.6    1
(AL359826) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   2.6    1
(DH272142) Oryzias latipes Fosmid clone:GOLWFno604_g08, forw...    46   2.6    1
(CZ523457) GMW2-75H8a.b2 GMW2 Glycine max genomic, genomic s...    46   2.6    1
(CJ375835) Molgula tectiformis cDNA, gastrula/neurula clone:...    46   2.6    1
(BI470662) sag13h11.y1 Gm-c1080 Glycine max cDNA clone GENOM...    46   2.6    1
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    46   2.6    1
(CP000361) Arcobacter butzleri RM4018, complete genome.            46   2.6    1
(AC040917) Homo sapiens chromosome 8, clone RP11-1M21, compl...    38   2.8    4
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    36   2.8    7
(DB592938) Halocynthia roretzi cDNA clone:ma305i05, 3' end.        36   3.3    3
(AL035475) Plasmodium falciparum MAL4P2.                           34   3.3    8
(AB363905) Chara braunii chloroplast atpB gene for ATP synth...    34   3.6    3
(DB623048) Halocynthia roretzi cDNA clone:mae35l19, 3' end.        36   3.7    3
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    36   4.2    8
(AC061989) Homo sapiens chromosome 8 clone RP11-257N13 map 8...    38   4.2    4
(EG618551) REPROTRACTF101157P5 POSSUM_01-POSSUM-C-REPROTRACT...    38   5.2    2
(AC104741) Homo sapiens chromosome 3 clone RP11-228H5, compl...    44   5.5    2
(AC172385) Strongylocentrotus purpuratus clone R3-1004I15, W...    42   6.1    4
(DT135220) JGI_ANNO15726.rev ANNO Pimephales promelas Whole ...    34   6.5    2
(AC025206) Homo sapiens chromosome 5 clone RP11-166J22 map 5...    44   6.6    3
(DU874679) 142524 Tomato HindIII BAC Library Solanum lycoper...    34   6.6    2
(CZ490884) GM_PBa0087M04f Soybean PI 437654 BAC library GM_P...    34   6.8    2
(AC169418) Bos taurus clone CH240-225N1, WORKING DRAFT SEQUE...    38   6.8    3
(AC015489) Homo sapiens clone RP11-20H13, LOW-PASS SEQUENCE ...    38   8.4    5
(AC079351) Homo sapiens chromosome 7 clone RP11-828B13, WORK...    38   8.9    4
(AC229723) Medicago truncatula clone mth2-29c19, WORKING DRA...    40   9.0    6
(EJ244403) 1095333037999 Global-Ocean-Sampling_GS-27-01-01-1...    40   9.7    2

>(C90804) Dictyostelium discoideum slug cDNA, clone SSJ168.
          Length = 635

 Score = 1217 bits (614), Expect = 0.0
 Identities = 614/614 (100%)
 Strand = Plus / Plus


Query: 348 atcttgacaatattagcacccaaatatattctcttgggaaaagggaaatacagaatttag 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   atcttgacaatattagcacccaaatatattctcttgggaaaagggaaatacagaatttag 63


Query: 408 agaaacgcatgatgaattacatagaaaattaacaattcacttaaataataatgcggtttt 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  agaaacgcatgatgaattacatagaaaattaacaattcacttaaataataatgcggtttt 123


Query: 468 agcagagaaattaggtgttcccaaatcgacataatgactttatatcaccgtcccaagaaa 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agcagagaaattaggtgttcccaaatcgacataatgactttatatcaccgtcccaagaaa 183


Query: 528 gattcaaggagaagaaggtttaatgagaaaatatacagcatatgttattgaagttgaagg 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gattcaaggagaagaaggtttaatgagaaaatatacagcatatgttattgaagttgaagg 243


Query: 588 tagtgaaaataagagatatcaagttacaagaagatataaacaatttgtattacttcacac 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tagtgaaaataagagatatcaagttacaagaagatataaacaatttgtattacttcacac 303


Query: 648 acaattggttagagtatttggagaacatgatttaccatctttaccagcaaaagcaaatgg 707
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acaattggttagagtatttggagaacatgatttaccatctttaccagcaaaagcaaatgg 363


Query: 708 tctctatttttcaaaagacgatcatactgaaaaacgtagagttaatttacaagaatatct 767
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tctctatttttcaaaagacgatcatactgaaaaacgtagagttaatttacaagaatatct 423


Query: 768 tcaaaatttagcaaagaatccagcaatcttaaattcaccagttttctatcatttccttaa 827
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcaaaatttagcaaagaatccagcaatcttaaattcaccagttttctatcatttccttaa 483


Query: 828 aagagacgaaggtcaaaacattgaccatgtcccaagttcaactccatctcattgactatc 887
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aagagacgaaggtcaaaacattgaccatgtcccaagttcaactccatctcattgactatc 543


Query: 888 aaatgattcaattaatttgaccaattcaatcaattaaatcaaataatatatatatacgtt 947
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaatgattcaattaatttgaccaattcaatcaattaaatcaaataatatatatatacgtt 603


Query: 948 tataggtgttggtc 961
           ||||||||||||||
Sbjct: 604 tataggtgttggtc 617

 Score = 44.1 bits (22), Expect(2) = 6e-04
 Identities = 37/42 (88%)
 Strand = Plus / Plus


Query: 291 gaaaaggaaaataaagaattaagagaaaagaatgatgaatta 332
           ||||||| ||||| |||||| ||||||| | |||||||||||
Sbjct: 41  gaaaagggaaatacagaatttagagaaacgcatgatgaatta 82

 Score = 32.2 bits (16), Expect(2) = 6e-04
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 274 ccaaatatattctctt 289
           ||||||||||||||||
Sbjct: 23  ccaaatatattctctt 38

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,059,328,714
Number of extensions: 97796457
Number of successful extensions: 5739477
Number of sequences better than 10.0: 46
Length of query: 1011
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 987
Effective length of database: 99,340,224,878
Effective search space: 98048801954586
Effective search space used: 98048801954586
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01943-1 (Contig-U01943-1Q) /CSM_Contig/Contig-U01943-1Q.Seq.d
         (1011 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382132_83(CR382132|pid:none) Yarrowia lipolytica strain CLIB12...    56   2e-06
FN317968_1(FN317968|pid:none) Schistosoma japonicum isolate Anhu...    55   5e-06
AE014296_1825(AE014296|pid:none) Drosophila melanogaster chromos...    54   1e-05
(Q9P779) RecName: Full=Sorting nexin C1711.11;  &AL353012_11(AL3...    52   3e-05
BC050851_1(BC050851|pid:none) Mus musculus sorting nexin 4, mRNA...    52   3e-05
AK222543_1(AK222543|pid:none) Homo sapiens mRNA for sorting nexi...    52   3e-05
(Q5R4C2) RecName: Full=Sorting nexin-4;  &CR861330_1(CR861330|pi...    52   4e-05
(O95219) RecName: Full=Sorting nexin-4;  &AF065485_1(AF065485|pi...    52   4e-05
EF107727_1(EF107727|pid:none) Pichia angusta Atg24p (atg24) gene...    52   4e-05
(A1A4L0) RecName: Full=Sorting nexin-4;  &BC126650_1(BC126650|pi...    51   6e-05
AB172721_1(AB172721|pid:none) Macaca fascicularis brain cDNA clo...    51   6e-05
(Q8BVL3) RecName: Full=Sorting nexin-17;  &AK077650_1(AK077650|p...    51   6e-05
BT059454_1(BT059454|pid:none) Salmo salar clone ssal-rgf-501-329...    51   7e-05
FN392319_1292(FN392319|pid:none) Pichia pastoris GS115 chromosom...    51   7e-05
BT034122_1(BT034122|pid:none) Zea mays full-length cDNA clone ZM...    50   2e-04
BT061102_1(BT061102|pid:none) Zea mays full-length cDNA clone ZM...    50   2e-04
AK298620_1(AK298620|pid:none) Homo sapiens cDNA FLJ56223 complet...    50   2e-04
(Q5R4A5) RecName: Full=Sorting nexin-17;  &CR861350_1(CR861350|p...    49   2e-04
DQ056143_27(DQ056143|pid:none) Coprinellus disseminatus strain C...    49   2e-04
BC162101_1(BC162101|pid:none) Danio rerio sorting nexin 18b, mRN...    49   3e-04
BC159078_1(BC159078|pid:none) Xenopus tropicalis hypothetical pr...    49   3e-04
BC091982_1(BC091982|pid:none) Danio rerio sorting nexin 4, mRNA ...    49   4e-04
AF121861_1(AF121861|pid:none) Homo sapiens sorting nexin 11 (SNX...    49   4e-04
(Q9Y5W9) RecName: Full=Sorting nexin-11;  &AK023932_1(AK023932|p...    49   4e-04
BC045228_1(BC045228|pid:none) Xenopus laevis sorting nexin 17, m...    49   4e-04
AK298551_1(AK298551|pid:none) Homo sapiens cDNA FLJ54273 complet...    49   4e-04
AY891369_1(AY891369|pid:none) Synthetic construct Homo sapiens c...    49   4e-04
BX571674_4(BX571674|pid:none) Zebrafish DNA sequence from clone ...    48   5e-04
AK293464_1(AK293464|pid:none) Homo sapiens cDNA FLJ53824 complet...    48   5e-04
(Q91WL6) RecName: Full=Sorting nexin-11;  &AK042409_1(AK042409|p...    48   5e-04
(Q5RID7) RecName: Full=Sorting nexin-17;                               48   6e-04
(Q8N9S9) RecName: Full=Sorting nexin-31;                               48   6e-04
BX276101_1(BX276101|pid:none) Zebrafish DNA sequence from clone ...    48   6e-04
(Q3MPQ4) RecName: Full=Sorting nexin MVP1;  &AP006852_75(AP00685...    48   6e-04
Z48229_1(Z48229|pid:none) S.cerevisiae tRNA-Val, orf1 and orf2 g...    47   0.001
AK017118_1(AK017118|pid:none) Mus musculus adult male testis cDN...    47   0.001
(P47057) RecName: Full=Sorting nexin-4; AltName: Full=Autophagy-...    47   0.001
AL391335_3(AL391335|pid:none) Human DNA sequence from clone RP11...    47   0.001
(Q28HD5) RecName: Full=Sorting nexin-31;  &CR760929_1(CR760929|p...    47   0.001
AB007957_1(AB007957|pid:none) Homo sapiens mRNA, chromosome 1 sp...    47   0.001
AB054889_1(AB054889|pid:none) Homo sapiens MRT1 RNA for MRT1B, c...    47   0.001
CU633438_237(CU633438|pid:none) Podospora anserina genomic DNA c...    46   0.002
AL023835_16(AL023835|pid:none) Caenorhabditis elegans YAC Y37A1B...    46   0.002
T26610(T26610)hypothetical protein Y37A1B.3 - Caenorhabditis ele...    46   0.002
CU928173_484(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    46   0.002
AK222793_1(AK222793|pid:none) Homo sapiens mRNA for sorting nexi...    45   0.003
EF397509_1(EF397509|pid:none) Equus caballus nexin 1 (SNX1) mRNA...    45   0.003
CR857103_1(CR857103|pid:none) Pongo abelii mRNA; cDNA DKFZp468F2...    45   0.003
(Q13596) RecName: Full=Sorting nexin-1;  &AK291752_1(AK291752|pi...    45   0.003
AK052343_1(AK052343|pid:none) Mus musculus 13 days embryo heart ...    45   0.003
G02522(G02522) sorting nexin 1 - human  &U53225_1(U53225|pid:none)     45   0.003
AY891394_1(AY891394|pid:none) Synthetic construct Homo sapiens c...    45   0.003
AK128179_1(AK128179|pid:none) Homo sapiens cDNA FLJ46302 fis, cl...    45   0.003
AB209013_1(AB209013|pid:none) Homo sapiens mRNA for sorting nexi...    45   0.003
(P40959) RecName: Full=Sorting nexin MVP1;  &S53033(S53033;S5022...    45   0.003
AF395536_1(AF395536|pid:none) Homo sapiens sorting nexin 18 (SNX...    45   0.003
(Q91ZR2) RecName: Full=Sorting nexin-18; AltName: Full=Sorting n...    45   0.003
AK222561_1(AK222561|pid:none) Homo sapiens mRNA for sorting nexi...    45   0.003
(Q05B62) RecName: Full=Sorting nexin-1;  &BC122759_1(BC122759|pi...    45   0.004
AL023835_15(AL023835|pid:none) Caenorhabditis elegans YAC Y37A1B...    45   0.004
(Q6DDY6) RecName: Full=Sorting nexin-31;  &BC077365_1(BC077365|p...    45   0.005
BC106667_1(BC106667|pid:none) Xenopus laevis MGC81468 protein, m...    45   0.005
AF065484_1(AF065484|pid:none) Homo sapiens sorting nexin 1A (SNX...    45   0.005
AB010245_1(AB010245|pid:none) Rattus norvegicus mrt1 mRNA for PD...    44   0.007
AB051816_1(AB051816|pid:none) Rattus norvegicus mrt1 mRNA for PD...    44   0.007
(Q8K4V4) RecName: Full=Sorting nexin-27; AltName: Full=Methamphe...    44   0.007
BC070650_1(BC070650|pid:none) Xenopus laevis hypothetical protei...    44   0.007
AK154079_1(AK154079|pid:none) Mus musculus 2 days neonate thymus...    44   0.007
(Q3UHD6) RecName: Full=Sorting nexin-27;  &BC156098_1(BC156098|p...    44   0.007
BC056315_1(BC056315|pid:none) Danio rerio sorting nexin family m...    44   0.007
BC107862_1(BC107862|pid:none) Homo sapiens sorting nexin family ...    44   0.007
AK147452_1(AK147452|pid:none) Mus musculus cDNA, RIKEN full-leng...    44   0.007
(A5PKA5) RecName: Full=Sorting nexin-27;  &BC142417_1(BC142417|p...    44   0.007
AJ720623_1(AJ720623|pid:none) Gallus gallus mRNA for hypothetica...    44   0.007
BC043328_1(BC043328|pid:none) Mus musculus sorting nexin 14, mRN...    44   0.009
AF361755_1(AF361755|pid:none) Rattus norvegicus serum- and gluco...    44   0.009
(Q8R4V0) RecName: Full=Serine/threonine-protein kinase Sgk3;    ...    44   0.009
BC068589_1(BC068589|pid:none) Homo sapiens sorting nexin 14, mRN...    44   0.012
AK023716_1(AK023716|pid:none) Homo sapiens cDNA FLJ13654 fis, cl...    44   0.012
CU928171_324(CU928171|pid:none) Kluyveromyces thermotolerans str...    44   0.012
AY272044_1(AY272044|pid:none) Homo sapiens transformation-relate...    44   0.012
BC006960_1(BC006960|pid:none) Mus musculus sorting nexin 2, mRNA...    44   0.012
AF065482_1(AF065482|pid:none) Homo sapiens sorting nexin 2 (SNX2...    44   0.012
AK153525_1(AK153525|pid:none) Mus musculus bone marrow macrophag...    44   0.012
(Q5R9A9) RecName: Full=Sorting nexin-2;  &CR859480_1(CR859480|pi...    44   0.012
AL136082_2(AL136082|pid:none) Human DNA sequence from clone RP1-...    44   0.012
BC084308_1(BC084308|pid:none) Xenopus laevis hypothetical LOC495...    44   0.012
AK293671_1(AK293671|pid:none) Homo sapiens cDNA FLJ51799 complet...    44   0.012
(Q9Y5W7) RecName: Full=Sorting nexin-14;  &AL136082_1(AL136082|p...    44   0.012
CR859594_1(CR859594|pid:none) Pongo abelii mRNA; cDNA DKFZp468L0...    44   0.012
AK296596_1(AK296596|pid:none) Homo sapiens cDNA FLJ50790 complet...    44   0.012
BC046520_1(BC046520|pid:none) Homo sapiens sorting nexin 14, mRN...    44   0.012
BC005110_1(BC005110|pid:none) Homo sapiens sorting nexin 14, mRN...    44   0.012
AB168588_1(AB168588|pid:none) Macaca fascicularis testis cDNA cl...    43   0.015
AF076957_1(AF076957|pid:none) Homo sapiens SDP1 protein mRNA, co...    43   0.015
BC005022_1(BC005022|pid:none) Homo sapiens sorting nexin 9, mRNA...    43   0.015
(Q6NRL2) RecName: Full=Sorting nexin-33; AltName: Full=SH3 and P...    43   0.015
AB209736_1(AB209736|pid:none) Homo sapiens mRNA for sorting nexi...    43   0.015
(Q9Y5X1) RecName: Full=Sorting nexin-9; AltName: Full=SH3 and PX...    43   0.015
BC054996_1(BC054996|pid:none) Xenopus laevis sorting nexin 2, mR...    43   0.020
(Q91VH2) RecName: Full=Sorting nexin-9;  &AK149849_1(AK149849|pi...    43   0.020
(Q6BIS2) RecName: Full=PX domain-containing protein YPT35;  &CR3...    43   0.020
BC158878_1(BC158878|pid:none) Rattus norvegicus sorting nexin 9,...    43   0.020
BC077503_1(BC077503|pid:none) Xenopus laevis sorting nexin assoc...    43   0.020
(O94291) RecName: Full=Sorting nexin-3;  &AL033388_7(AL033388|pi...    43   0.020
BC084281_1(BC084281|pid:none) Xenopus laevis hypothetical LOC495...    43   0.020
AK300144_1(AK300144|pid:none) Homo sapiens cDNA FLJ51699 complet...    42   0.026
BC092547_1(BC092547|pid:none) Xenopus tropicalis neutrophil cyto...    42   0.026
AK010572_1(AK010572|pid:none) Mus musculus ES cells cDNA, RIKEN ...    42   0.026
AP008207_2946(AP008207|pid:none) Oryza sativa (japonica cultivar...    42   0.026
(Q5KKB9) RecName: Full=Sorting nexin-41;  &AE017343_358(AE017343...    42   0.026
(P97369) RecName: Full=Neutrophil cytosol factor 4;          Sho...    42   0.026
AK053761_1(AK053761|pid:none) Mus musculus 0 day neonate eyeball...    42   0.026
(Q4PHC3) RecName: Full=Sorting nexin MVP1;                             42   0.026
AK151793_1(AK151793|pid:none) Mus musculus bone marrow macrophag...    42   0.026
AF068746_1(AF068746|pid:none) Rattus norvegicus PIPAS mRNA, comp...    42   0.026
AP003734_2(AP003734|pid:none) Oryza sativa Japonica Group genomi...    42   0.026
BC091939_1(BC091939|pid:none) Danio rerio si:ch211-103f16.1, mRN...    42   0.034
(P57769) RecName: Full=Sorting nexin-16;                               42   0.034
(O74509) RecName: Full=Vacuolar morphogenesis protein 7 homolog;...    42   0.034
AK151867_1(AK151867|pid:none) Mus musculus bone marrow macrophag...    42   0.034
BX908397_5(BX908397|pid:none) Zebrafish DNA sequence from clone ...    42   0.034
(Q9ERE3) RecName: Full=Serine/threonine-protein kinase Sgk3;    ...    42   0.034
AK150510_1(AK150510|pid:none) Mus musculus bone marrow macrophag...    42   0.034
AL589692_2(AL589692|pid:none) Mouse DNA sequence from clone RP23...    42   0.034
CR855551_1(CR855551|pid:none) Xenopus tropicalis finished cDNA, ...    42   0.034
CR933673_1(CR933673|pid:none) Homo sapiens mRNA; cDNA DKFZp781N0...    42   0.044
AB445190_1(AB445190|pid:none) Gasterosteus wheatlandi SH3PX3 gen...    42   0.044
BC167076_1(BC167076|pid:none) Rattus norvegicus neutrophil cytos...    42   0.044
BC150242_1(BC150242|pid:none) Danio rerio sorting nexin 1, mRNA ...    42   0.044
AK223523_1(AK223523|pid:none) Homo sapiens mRNA for serum/glucoc...    42   0.044
BC167638_1(BC167638|pid:none) Xenopus tropicalis hypothetical pr...    42   0.044
BC163869_1(BC163869|pid:none) Danio rerio sorting nexin 1, mRNA ...    42   0.044
AY335593_1(AY335593|pid:none) Synthetic construct Homo sapiens s...    42   0.044
(Q5R7A7) RecName: Full=Serine/threonine-protein kinase Sgk3;    ...    42   0.044
BC125699_1(BC125699|pid:none) Xenopus tropicalis sorting nexin 1...    41   0.058
AB173379_1(AB173379|pid:none) Macaca fascicularis brain cDNA clo...    41   0.058
EF594314_8(EF594314|pid:none) Astatotilapia burtoni clone BAC 34...    41   0.058
BC121402_1(BC121402|pid:none) Xenopus tropicalis sorting nexin 1...    41   0.058
AJ720555_1(AJ720555|pid:none) Gallus gallus mRNA for hypothetica...    41   0.058
EU025708_10(EU025708|pid:none) Salmo salar EAP30 subunit of ELL ...    41   0.058
BC114221_1(BC114221|pid:none) Xenopus laevis hypothetical protei...    41   0.058
(Q8C080) RecName: Full=Sorting nexin-16;  &AK032055_1(AK032055|p...    41   0.058
AB025632_4(AB025632|pid:none) Arabidopsis thaliana genomic DNA, ...    41   0.058
AK166422_1(AK166422|pid:none) Mus musculus mammary gland RCB-052...    41   0.058
BC068958_1(BC068958|pid:none) Xenopus laevis hypothetical protei...    41   0.058
(Q6FNH2) RecName: Full=Sorting nexin MVP1;  &CR380956_504(CR3809...    41   0.076
AL163652_6(AL163652|pid:none) Arabidopsis thaliana DNA chromosom...    41   0.076
BC168571_1(BC168571|pid:none) Xenopus tropicalis phosphoinositid...    41   0.076
(Q5R6Q7) RecName: Full=Sorting nexin-16;  &CR860428_1(CR860428|p...    41   0.076
BT058719_1(BT058719|pid:none) Salmo salar clone ssal-rgf-001-036...    41   0.076
AB445192_1(AB445192|pid:none) Pungitius pungitius SH3PX3 gene fo...    41   0.076
AK316886_1(AK316886|pid:none) Arabidopsis thaliana AT5G07120 mRN...    41   0.076
(Q28GP7) RecName: Full=Sorting nexin-33; AltName: Full=SH3 and P...    41   0.076
AB445193_1(AB445193|pid:none) Spinachia spinachia SH3PX3 gene fo...    41   0.076
(P57768) RecName: Full=Sorting nexin-16;  &AK290903_1(AK290903|p...    41   0.076
EF033004_1(EF033004|pid:none) Fundulus heteroclitus SH3 and PX d...    40   0.099
BC113230_1(BC113230|pid:none) Bos taurus neutrophil cytosolic fa...    40   0.099
CR859024_1(CR859024|pid:none) Pongo abelii mRNA; cDNA DKFZp469A1...    40   0.099
EF033010_1(EF033010|pid:none) Lutjanus mahogoni SH3 and PX domai...    40   0.099
AF443792_1(AF443792|pid:none) Bison bison NADPH oxidase componen...    40   0.099
EU002066_1(EU002066|pid:none) Hiodon alosoides isolate M05 SH3 a...    40   0.099
EU002085_1(EU002085|pid:none) Argentina sialis isolate R17 SH3 a...    40   0.099
BT045895_1(BT045895|pid:none) Salmo salar clone ssal-rgf-536-002...    40   0.099
EU002077_1(EU002077|pid:none) Coryphaenoides rupestris isolate M...    40   0.099
AF411137_1(AF411137|pid:none) Bison bison NADPH oxidase cytosoli...    40   0.099
AB445191_1(AB445191|pid:none) Gasterosteus aculeatus SH3PX3 gene...    40   0.099
(Q8WV41) RecName: Full=Sorting nexin-33; AltName: Full=SH3 and P...    40   0.099
(Q6C2S9) RecName: Full=Sorting nexin-3;  &CR382132_229(CR382132|...    40   0.099
EU002076_1(EU002076|pid:none) Stomias boa isolate M37 SH3 and PX...    40   0.099
EU002074_1(EU002074|pid:none) Herichthys cyanoguttatus isolate M...    40   0.13
EU002075_1(EU002075|pid:none) Mugil curema isolate M36 SH3 and P...    40   0.13
EU002087_1(EU002087|pid:none) Polymixia japonica isolate R26 SH3...    40   0.13
AM270157_33(AM270157|pid:none) Aspergillus niger contig An08c002...    40   0.13
EF033006_1(EF033006|pid:none) Oreochromis niloticus SH3 and PX d...    40   0.13
EU002079_1(EU002079|pid:none) Neoscopelus macrolepidotus isolate...    40   0.13
EU002081_1(EU002081|pid:none) Labidesthes sicculus isolate M45 S...    40   0.13
EF033001_1(EF033001|pid:none) Danio rerio SH3 and PX domain-cont...    40   0.13
EU002069_1(EU002069|pid:none) Esox lucius isolate M24 SH3 and PX...    40   0.13
EU002083_1(EU002083|pid:none) Anguilla rostrata isolate R09 SH3 ...    40   0.13
EU002080_1(EU002080|pid:none) Synodus foetens isolate M43 SH3 an...    40   0.13
EF033005_1(EF033005|pid:none) Oryzias latipes SH3 and PX domain-...    40   0.13
EU002071_1(EU002071|pid:none) Gambusia affinis isolate M26 SH3 a...    40   0.13
EF033011_1(EF033011|pid:none) Brotula multibarbata SH3 and PX do...    40   0.13
EF033000_1(EF033000|pid:none) Amia calva SH3 and PX domain-conta...    40   0.13
EU002089_1(EU002089|pid:none) Monopterus albus isolate R40 SH3 a...    40   0.13
EU002090_1(EU002090|pid:none) Sebastes ruberrimus isolate R41 SH...    40   0.13
EU002068_1(EU002068|pid:none) Elops saurus isolate M20 SH3 and P...    40   0.13
BC169193_1(BC169193|pid:none) Danio rerio sorting nexin 33, mRNA...    40   0.13
AF085233_1(AF085233|pid:none) Homo sapiens SGK-like protein SGKL...    40   0.17
CR382130_1089(CR382130|pid:none) Yarrowia lipolytica strain CLIB...    40   0.17
(Q6FPT9) RecName: Full=Sorting nexin-4; AltName: Full=Autophagy-...    40   0.17
AB038267_1(AB038267|pid:none) Tursiops truncatus mRNA for p40-ph...    40   0.17
AK082871_1(AK082871|pid:none) Mus musculus ES cells cDNA, RIKEN ...    39   0.22
AM270376_16(AM270376|pid:none) Aspergillus niger contig An16c024...    39   0.22
BX649427_1(BX649427|pid:none) Zebrafish DNA sequence from clone ...    39   0.22
AK161672_1(AK161672|pid:none) Mus musculus 8 days embryo whole b...    39   0.22
BX908812_28(BX908812|pid:none) Neurospora crassa DNA linkage gro...    39   0.22
AE017343_214(AE017343|pid:none) Cryptococcus neoformans var. neo...    39   0.22
EU002070_1(EU002070|pid:none) Gadus morhua isolate M25 SH3 and P...    39   0.22
AK045061_1(AK045061|pid:none) Mus musculus 9.5 days embryo parth...    39   0.22
BC163599_1(BC163599|pid:none) Danio rerio neutrophil cytosolic f...    39   0.22
(O70167) RecName: Full=Phosphatidylinositol-4-phosphate 3-kinase...    39   0.38
BC150813_1(BC150813|pid:none) Mus musculus phosphatidylinositol ...    39   0.38
JC5985(JC5985)phosphoinositide 3-kinase C2gamma - mouse                39   0.38
BC129210_1(BC129210|pid:none) Danio rerio sorting nexin 14, mRNA...    39   0.38
S39768(S39768;S39769)neutrophil cytosol factor p40 - human             38   0.49
AB025219_1(AB025219|pid:none) Homo sapiens NCF4 mRNA for p40phox...    38   0.49
AK290924_1(AK290924|pid:none) Homo sapiens cDNA FLJ75679 complet...    38   0.49
AB445189_1(AB445189|pid:none) Culaea inconstans SH3PX3 gene for ...    38   0.49
AX399856_1(AX399856|pid:none) Sequence 27 from Patent WO0218424.       38   0.49
U50729_1(U50729|pid:none) Human p40-phox (NCF4) gene, exon 10, a...    38   0.49
AK223324_1(AK223324|pid:none) Homo sapiens mRNA for neutrophil c...    38   0.49
AB445188_1(AB445188|pid:none) Apeltes quadracus SH3PX3 gene for ...    38   0.49
CR542078_1(CR542078|pid:none) Homo sapiens full open reading fra...    38   0.49
(Q15080) RecName: Full=Neutrophil cytosol factor 4;          Sho...    38   0.49
BT075466_1(BT075466|pid:none) Osmerus mordax clone omor-eva-514-...    38   0.49
AE014298_809(AE014298|pid:none) Drosophila melanogaster chromoso...    38   0.49
AK070641_1(AK070641|pid:none) Oryza sativa Japonica Group cDNA c...    38   0.64
CU928176_472(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    38   0.64
AY884835_1(AY884835|pid:none) Pichia angusta Vam7p (VAM7) gene, ...    38   0.64
AP008207_1564(AP008207|pid:none) Oryza sativa (japonica cultivar...    38   0.64
AM920435_1000(AM920435|pid:none) Penicillium chrysogenum Wiscons...    38   0.64
AB196473_1(AB196473|pid:none) Ciona intestinalis p47phox mRNA fo...    38   0.64
(Q17QS1) RecName: Full=Sorting nexin-24;  &BC118214_1(BC118214|p...    37   0.84
AY358098_1(AY358098|pid:none) Homo sapiens clone DNA66477 SBBI31...    37   0.84
(Q9Y5X2) RecName: Full=Sorting nexin-8;  &AF121858_1(AF121858|pi...    37   0.84
BX571700_5(BX571700|pid:none) Zebrafish DNA sequence from clone ...    37   0.84
DQ341372_1(DQ341372|pid:none) Siniperca chuatsi p40phox (p40phox...    37   0.84
BC007785_1(BC007785|pid:none) Homo sapiens sorting nexin 8, mRNA...    37   0.84
AM920435_285(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    37   1.1
(O75747) RecName: Full=Phosphatidylinositol-4-phosphate 3-kinase...    37   1.1
DQ066327_1(DQ066327|pid:none) Ixodes scapularis isolate IS-6-12L...    37   1.1
CR926135_6(CR926135|pid:none) Zebrafish DNA sequence from clone ...    37   1.1
BC079508_1(BC079508|pid:none) Danio rerio si:dkey-220f10.6, mRNA...    37   1.1
(Q75CC3) RecName: Full=Sorting nexin MVP1;  &AE016816_192(AE0168...    37   1.4
AM920431_209(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    37   1.4
(Q5U2S5) RecName: Full=Sorting nexin-24;  &(Q9CRB0) RecName: Fu ...    37   1.4
AK080441_1(AK080441|pid:none) Mus musculus 7 days neonate cerebe...    36   1.9
(Q07528) RecName: Full=Autophagy-related protein 20; AltName: Fu...    36   1.9
BC076062_1(BC076062|pid:none) Danio rerio hypothetical protein L...    36   1.9
AK086880_1(AK086880|pid:none) Mus musculus 0 day neonate lung cD...    36   1.9
(Q6FR93) RecName: Full=Autophagy-related protein 20;  &CR380954_...    36   1.9
AL845420_5(AL845420|pid:none) Zebrafish DNA sequence from clone ...    36   1.9
AK122412_1(AK122412|pid:none) Mus musculus mRNA for mKIAA0975 pr...    36   1.9
CU550712_1(CU550712|pid:none) Zebrafish DNA sequence from clone ...    36   1.9
BC097192_1(BC097192|pid:none) Danio rerio zgc:114136, mRNA (cDNA...    36   1.9
BC096861_1(BC096861|pid:none) Danio rerio sorting nexin 9-like, ...    36   1.9
BX324115_3(BX324115|pid:none) Zebrafish DNA sequence from clone ...    36   1.9
AF082516_1(AF082516|pid:none) Homo sapiens I-1 receptor candidat...    36   2.4
BC056900_1(BC056900|pid:none) Homo sapiens nischarin, mRNA (cDNA...    36   2.4
AB192468_1(AB192468|pid:none) Oncorhynchus mykiss p40phox mRNA f...    36   2.4
(Q9Y2I1) RecName: Full=Nischarin; AltName: Full=Imidazoline rece...    36   2.4
BT045680_1(BT045680|pid:none) Salmo salar clone ssal-rgf-528-280...    36   2.4
AM494944_127(AM494944|pid:none) Leishmania braziliensis chromoso...    36   2.4
BC130277_1(BC130277|pid:none) Homo sapiens phosphoinositide-3-ki...    36   2.4
BC038102_1(BC038102|pid:none) Homo sapiens nischarin, mRNA (cDNA...    36   2.4
AB384069_1(AB384069|pid:none) Synthetic construct DNA, clone: pF...    36   2.4
BC144134_1(BC144134|pid:none) Homo sapiens phosphoinositide-3-ki...    36   2.4
CP000496_123(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    35   3.2
FJ977565_1(FJ977565|pid:none) Danio rerio sortin nexin member (S...    35   4.1
BC128617_1(BC128617|pid:none) Xenopus tropicalis sorting nexin 2...    35   4.1
(Q6CWX3) RecName: Full=Sorting nexin-41;  &CR382122_28(CR382122|...    35   4.1
AL844509_312(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.4
BT055131_1(BT055131|pid:none) Zea mays full-length cDNA clone ZM...    35   5.4
(Q4P1V3) RecName: Full=Sorting nexin-3;                                34   7.1
BC118022_1(BC118022|pid:none) Mus musculus SH3 and PX domains 2A...    34   7.1
BC146309_1(BC146309|pid:none) Synthetic construct Homo sapiens c...    34   7.1
CU928176_542(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    34   7.1
BC068771_1(BC068771|pid:none) Xenopus laevis hypothetical protei...    34   9.2
BC076870_1(BC076870|pid:none) Xenopus laevis MGC84638 protein, m...    34   9.2
CP001329_9(CP001329|pid:none) Micromonas sp. RCC299 chromosome 9...    34   9.2
FM992688_140(FM992688|pid:none) Candida dubliniensis CD36 chromo...    34   9.2
JC5500(JC5500) phosphoinositide 3-kinase (EC 2.7.1.-) - human  &...    34   9.2
Y13892_1(Y13892|pid:none) Homo sapiens mRNA for PI-3 kinase.           34   9.2
CU640366_57(CU640366|pid:none) Podospora anserina genomic DNA ch...    34   9.2
AB173524_1(AB173524|pid:none) Macaca fascicularis brain cDNA clo...    34   9.2
AB210006_1(AB210006|pid:none) Homo sapiens mRNA for PIK3C2B vari...    34   9.2

>CR382132_83(CR382132|pid:none) Yarrowia lipolytica strain CLIB122
            chromosome F complete sequence.
          Length = 1370

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
 Frame = +1

Query: 448  LNNNAVLAEKLGVPKST**LY----ITVPRKIQGEEGLMRKYTAYVIEV---------EG 588
            +NN  +  ++  V ++   LY    I +   +   + +  ++  Y++EV         EG
Sbjct: 980  INNKEMQRQQYIVQETDNSLYGRSAIAIQNAVSSHDKMGNEFVVYLVEVTRHGDDSDKEG 1039

Query: 589  SENKRYQVTRRYKQFVLLHTQLVRVFGEHDLPSLPAKANGLYFSKDDHTEKRRVNLQEYL 768
            + +  + V RRY  F+ LH  L+R F        P K   + F++    + R+V L+ YL
Sbjct: 1040 ASSATWIVARRYSHFLQLHQHLIRSFPYISRIPFPKKKVVIKFNQKSFVDSRKVQLEAYL 1099

Query: 769  QNLAKNPAILNSPVFYHFL 825
            + L K P I NS  +  FL
Sbjct: 1100 RELLKMPEICNSVAYRAFL 1118

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,175,777,552
Number of extensions: 19974649
Number of successful extensions: 50038
Number of sequences better than 10.0: 278
Number of HSP's gapped: 50004
Number of HSP's successfully gapped: 278
Length of query: 337
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 208
Effective length of database: 633,664,753
Effective search space: 131802268624
Effective search space used: 131802268624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.35  gvh: 0.26  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.23  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U01943-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 4
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0