Contig-U12435-1
Contig ID Contig-U12435-1
Contig update 2002.12.18
Contig sequence
>Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
TATAATAATAAATTTATTAAATTTTATTAGTTGTGATATTAAACTTTTTT
TTTTCTGTAAATGTTGGANATTGGAGTGATAATAATAATTGGTATGATTA
TATTAGTAGTAGCCAAACAACACTTCCAACATTAAATGATGAAACATACT
TAACATTAGTTTCCAATCAAATAGTAACCAACCACTATCAAAAAGCTATT
GCATCTAAAATTTATGTTGGTGGTTTTAATTATTCAACAAACTTTAATTC
CAAATATGGTATTCAAACTGCACTATTCCAAGTCAAAGACCAATTTGCCC
CTCAAGAAGTAATATTTAATATTAGTGGCGATCCATTAGAAAATCCAGAT
TTCAGAATCGATGCTGAAACTTTAATTTGTGCCGCAGGTTGTACTTTAAG
AACATTGGGTAAACATTTCTATGCTCCAAATGCAAGTGTTAGTATTTATG
GTGGAGTAGGTTGGGTTATTCAAGATACCTTGGTTTCCGGATTTTATTTA
GACTATACACTCTCCCTACTTCTCATGTCAAATGCTACAATGTTGGTTGA
AAATGCATTTATTGATCTCTATTCTCAATGGGATGTCATTTCTCAAAGTA
CTATTGTTATCAATAACACTCTTAATAAATTTGTAGTAAAAGATGGATCA
CTTTTAAATATTAAAGATTCAAAAATATCAATTTACAATAGTATGCTCTT
GACTGGAAATAAAACCAAATTAACTTTTGAAAATAGTATTGTTGATTTTG
GATTGGTTAAATTAGTTCCAATTAGTAGATGGGTTGATAGTCAATTGGTC
TTTTTAAATAGTGTATTTGATTGTAAACATCAAATTATTGTTAGTGGAAG
TTCATTAACAAGTTTGATACTTATCAAAGAAAATTCAAATGTAACTTTTA
ATGATGAGGTTGAATTTGATGGTGATTCTTTATTGGGTCTTTATAATTCC
AAATTGACAACAGGTAAATCATTGTTATTTGATGGTGCAAG---------
-TCCAAAGAAACTTCCATCAAGACCTATAATCAAGATGGTGGATTATTAG
TTTTAGATGATGCTTTGGTTCACTCAGATGAAACTATTAATTTATCAAAT
GGTTCTTTATATGGCATTGGTACCATTAATTCCTCATTATCAGTATCCGA
TGGTATTGTTGGTGATAAAGCTATCATTGGTACATTAAATGTCAGTGGTG
AATTAAATTCTGAAAATGGTCAATTCATTTTCACTTTAGATAGTTTAACC
AATTCAACATTTATTAATATTGGTAAAAATGCAACAATTAATAATTCAAC
ATTAATAATTAGAATTAATCAATATTTCATTGATAGTTTATTAAATCCAA
CACCAACACCAACAACTACAAATTCAACAAATTCAACTCAAGTATTTAAT
CAAACTTTAATAAATTATGAAAATTTATCTGGTACTGGATTTGGTGAAAT
TAAATTTGGTACCTATGACCCAACAAGTGGAGAAGAGAAATCATTACCAT
CATGTTATTCCGCAAGTAGTAGTAATTCTGGTAAAAACTTTGGTTTATTA
ATTAGAAGTGATGGTTGTGGAAATGTTGGTGATGGTAATAATGGTAATGG
TAATGGTGGTAATGGTGGTAATGGTGGTAAATCAAGTTTGTCAACTGGTG
CAATCGTTGGTATTGTAGTTGGTATTGCTGGTGGTGCTGCTATTATTGGT
ACTGTTATTTACTTTAGAAATCGTTTACCAACAACTCAAACTTTGAAATA
TAAAGTCAAACAACATTACAAAAGCACAAGAATCACAATCAGAACTAAAA
CCAAGTAT

Gap gap included
Contig length 1798
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2398171
End point 2396371
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 9
Link to clone list U12435
List of clone(s)

est1=SHI122F,1,601
est2=VHH393F,137,716
est3=VHD857F,231,760
est4=VHK583F,370,991
est5=VHD857Z,992,1795
est6=SHC246Z,1032,1627
est7=VHK583Z,1065,1796
est8=VHM496Z,1213,1559
est9=VHH393Z,1276,1800
Translated Amino Acid sequence
***iy*ILLVVILNFFFSVNVGXWSDNNNWYDYISSSQTTLPTLNDETYLTLVSNQIVTN
HYQKAIASKIYVGGFNYSTNFNSKYGIQTALFQVKDQFAPQEVIFNISGDPLENPDFRID
AETLICAAGCTLRTLGKHFYAPNASVSIYGGVGWVIQDTLVSGFYLDYTLSLLLMSNATM
LVENAFIDLYSQWDVISQSTIVINNTLNKFVVKDGSLLNIKDSKISIYNSMLLTGNKTKL
TFENSIVDFGLVKLVPISRWVDSQLVFLNSVFDCKHQIIVSGSSLTSLILIKENSNVTFN
DEVEFDGDSLLGLYNSKLTTGKSLLFDGA---

---SKETSIKTYNQDGGLLVLDDALVHSDETINLSNGSLYGIGTINSSLSVSDGIVGDKA
IIGTLNVSGELNSENGQFIFTLDSLTNSTFINIGKNATINNSTLIIRINQYFIDSLLNPT
PTPTTTNSTNSTQVFNQTLINYENLSGTGFGEIKFGTYDPTSGEEKSLPSCYSASSSNSG
KNFGLLIRSDGCGNVGDGNNGNGNGGNGGNGGKSSLSTGAIVGIVVGIAGGAAIIGTVIY
FRNRLPTTQTLKYKVKQHYKSTRITIRTKTKY


Translated Amino Acid sequence (All Frames)
Frame A:
ynnkfikfy*l*y*tfffl*mlxigviiiigmiilvvakqhfqh*mmkht*h*fpik**p
ttikkllhlkfmlvvliiqqtlipnmvfklhysksktnlplkk*ylilvaih*kiqises
mlkl*fvpqvvl*ehwvnismlqmqvlvfmve*vglfkipwfpdfi*tihspyfscqmlq
cwlkmhllisilngmsflkvlllsitllinl**kmdhf*ilkiqkyqftivcs*leikpn
*llkivllildwln*fqlvdglivnwsf*ivylivniklllvevh*qv*ylskkiqm*ll
mmrlnlmvilywvfiipn*qqvnhcylmvq---

---SKETSIKTYNQDGGLLVLDDALVHSDETINLSNGSLYGIGTINSSLSVSDGIVGDKA
IIGTLNVSGELNSENGQFIFTLDSLTNSTFINIGKNATINNSTLIIRINQYFIDSLLNPT
PTPTTTNSTNSTQVFNQTLINYENLSGTGFGEIKFGTYDPTSGEEKSLPSCYSASSSNSG
KNFGLLIRSDGCGNVGDGNNGNGNGGNGGNGGKSSLSTGAIVGIVVGIAGGAAIIGTVIY
FRNRLPTTQTLKYKVKQHYKSTRITIRTKTKY

Frame B:
iiinllnfiscdiklfffckcwxle****lv*ly***pnntsnik**nilnisfqsnsnq
plsksyci*nlcwwf*lfnkl*fqiwysnctipsqrpicpsrsni*y*wrsirksrfqnr
c*nfnlcrrlyfknig*tflcskckc*ylwwsrlgysrylgfrilfrlytlptshvkcyn
vg*kciy*slfsmgchfskyycyq*hs**icskrwitfky*rfkninlq*yaldwk*nqi
nf*k*yc*fwig*issn**mg**siglfk*ci*l*tsnyc*wkfinkfdtyqrkfkcnf*
**g*i*w*ffigsl*fqidnr*iivi*wck---

---pkklpsrpiikmvdy*f*mmlwftqmklliyqmvlymalvpliphyqypmvllvikl
slvh*msvvn*ilkmvnsfsl*iv*piqhllilvkmqqliiqh**lelinislivy*iqh
qhqqlqiqqiqlkylikl**imkiylvldlvklnlvpmtqqvekrnhyhhvipqvvvilv
ktlvy*levmvvemlvmvimvmvmvvmvvmvvnqvcqlvqslvl*lvllvvllllvllft
leivyqqlkl*niksnnitkaqesqselkps

Frame C:
***iy*ILLVVILNFFFSVNVGXWSDNNNWYDYISSSQTTLPTLNDETYLTLVSNQIVTN
HYQKAIASKIYVGGFNYSTNFNSKYGIQTALFQVKDQFAPQEVIFNISGDPLENPDFRID
AETLICAAGCTLRTLGKHFYAPNASVSIYGGVGWVIQDTLVSGFYLDYTLSLLLMSNATM
LVENAFIDLYSQWDVISQSTIVINNTLNKFVVKDGSLLNIKDSKISIYNSMLLTGNKTKL
TFENSIVDFGLVKLVPISRWVDSQLVFLNSVFDCKHQIIVSGSSLTSLILIKENSNVTFN
DEVEFDGDSLLGLYNSKLTTGKSLLFDGA---

---qrnfhqdl*srwwiisfr*cfgslr*ny*fikwffiwhwyh*fliisirwycw**sy
hwyikcqw*ikf*kwsihfhfr*fnqfniy*yw*kcnn**fninn*n*sifh**fiksnt
ntnnykfnkfnssi*snfnkl*kfiwywiw*n*iwyl*pnkwrreiitimlfrk***fw*
klwfin*k*wlwkcw*w**w*w*ww*ww*ww*ikfvnwcnrwycswycwwccyywycyll
*ksftnnsnfei*sqttlqkhknhnqn*nqv

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12435-1 (Contig-U12435-1Q)
/CSM_Contig/Contig-U12435-1Q.Seq.d
(1808 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti... 2968 0.0
Contig-U10957-1 (Contig-U10957-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U10941-1 (Contig-U10941-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U07559-1 (Contig-U07559-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U00318-1 (Contig-U00318-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U05595-1 (Contig-U05595-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U13820-1 (Contig-U13820-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Conti... 42 0.002

>Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
Length = 1808

Score = 2968 bits (1497), Expect = 0.0
Identities = 1550/1560 (99%)
Strand = Plus / Plus


Query: 1 tataataataaatttattaaattttattagttgtgatattaaacnnnnnnnnnnctgtaa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 tataataataaatttattaaattttattagttgtgatattaaacttttttttttctgtaa 60


Query: 61 atgttgganattggagtgataataataattggtatgattatattagtagtagccaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgttgganattggagtgataataataattggtatgattatattagtagtagccaaacaa 120


Query: 121 cacttccaacattaaatgatgaaacatacttaacattagtttccaatcaaatagtaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacttccaacattaaatgatgaaacatacttaacattagtttccaatcaaatagtaacca 180


Query: 181 accactatcaaaaagctattgcatctaaaatttatgttggtggttttaattattcaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accactatcaaaaagctattgcatctaaaatttatgttggtggttttaattattcaacaa 240


Query: 241 actttaattccaaatatggtattcaaactgcactattccaagtcaaagaccaatttgccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 actttaattccaaatatggtattcaaactgcactattccaagtcaaagaccaatttgccc 300


Query: 301 ctcaagaagtaatatttaatattagtggcgatccattagaaaatccagatttcagaatcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcaagaagtaatatttaatattagtggcgatccattagaaaatccagatttcagaatcg 360


Query: 361 atgctgaaactttaatttgtgccgcaggttgtactttaagaacattgggtaaacatttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgctgaaactttaatttgtgccgcaggttgtactttaagaacattgggtaaacatttct 420


Query: 421 atgctccaaatgcaagtgttagtatttatggtggagtaggttgggttattcaagatacct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgctccaaatgcaagtgttagtatttatggtggagtaggttgggttattcaagatacct 480


Query: 481 tggtttccggattttatttagactatacactctccctacttctcatgtcaaatgctacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggtttccggattttatttagactatacactctccctacttctcatgtcaaatgctacaa 540


Query: 541 tgttggttgaaaatgcatttattgatctctattctcaatgggatgtcatttctcaaagta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgttggttgaaaatgcatttattgatctctattctcaatgggatgtcatttctcaaagta 600


Query: 601 ctattgttatcaataacactcttaataaatttgtagtaaaagatggatcacttttaaata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctattgttatcaataacactcttaataaatttgtagtaaaagatggatcacttttaaata 660


Query: 661 ttaaagattcaaaaatatcaatttacaatagtatgctcttgactggaaataaaaccaaat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttaaagattcaaaaatatcaatttacaatagtatgctcttgactggaaataaaaccaaat 720


Query: 721 taacttttgaaaatagtattgttgattttggattggttaaattagttccaattagtagat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 taacttttgaaaatagtattgttgattttggattggttaaattagttccaattagtagat 780


Query: 781 gggttgatagtcaattggtctttttaaatagtgtatttgattgtaaacatcaaattattg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gggttgatagtcaattggtctttttaaatagtgtatttgattgtaaacatcaaattattg 840


Query: 841 ttagtggaagttcattaacaagtttgatacttatcaaagaaaattcaaatgtaactttta 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttagtggaagttcattaacaagtttgatacttatcaaagaaaattcaaatgtaactttta 900


Query: 901 atgatgaggttgaatttgatggtgattctttattgggtctttataattccaaattgacaa 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 atgatgaggttgaatttgatggtgattctttattgggtctttataattccaaattgacaa 960


Query: 961 caggtaaatcattgttatttgatggtgcaagnnnnnnnnnntccaaagaaacttccatca 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 caggtaaatcattgttatttgatggtgcaagnnnnnnnnnntccaaagaaacttccatca 1020


Query: 1021 agacctataatcaagatggtggattattagttttagatgatgctttggttcactcagatg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 agacctataatcaagatggtggattattagttttagatgatgctttggttcactcagatg 1080


Query: 1081 aaactattaatttatcaaatggttctttatatggcattggtaccattaattcctcattat 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaactattaatttatcaaatggttctttatatggcattggtaccattaattcctcattat 1140


Query: 1141 cagtatccgatggtattgttggtgataaagctatcattggtacattaaatgtcagtggtg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 cagtatccgatggtattgttggtgataaagctatcattggtacattaaatgtcagtggtg 1200


Query: 1201 aattaaattctgaaaatggtcaattcattttcactttagatagtttaaccaattcaacat 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aattaaattctgaaaatggtcaattcattttcactttagatagtttaaccaattcaacat 1260


Query: 1261 ttattaatattggtaaaaatgcaacaattaataattcaacattaataattagaattaatc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ttattaatattggtaaaaatgcaacaattaataattcaacattaataattagaattaatc 1320


Query: 1321 aatatttcattgatagtttattaaatccaacaccaacaccaacaactacaaattcaacaa 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aatatttcattgatagtttattaaatccaacaccaacaccaacaactacaaattcaacaa 1380


Query: 1381 attcaactcaagtatttaatcaaactttaataaattatgaaaatttatctggtactggat 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 attcaactcaagtatttaatcaaactttaataaattatgaaaatttatctggtactggat 1440


Query: 1441 ttggtgaaattaaatttggtacctatgacccaacaagtggagaagagaaatcattaccat 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 ttggtgaaattaaatttggtacctatgacccaacaagtggagaagagaaatcattaccat 1500


Query: 1501 catgttattccgcaagtagtagtaattctggtaaaaactttggtttattaattagaagtg 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 catgttattccgcaagtagtagtaattctggtaaaaactttggtttattaattagaagtg 1560


Score = 353 bits (178), Expect = 4e-97
Identities = 178/178 (100%)
Strand = Plus / Plus


Query: 1631 atcaagtttgtcaactggtgcaatcgttggtattgtagttggtattgctggtggtgctgc 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1631 atcaagtttgtcaactggtgcaatcgttggtattgtagttggtattgctggtggtgctgc 1690


Query: 1691 tattattggtactgttatttactttagaaatcgtttaccaacaactcaaactttgaaata 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 tattattggtactgttatttactttagaaatcgtttaccaacaactcaaactttgaaata 1750


Query: 1751 taaagtcaaacaacattacaaaagcacaagaatcacaatcagaactaaaaccaagtat 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1751 taaagtcaaacaacattacaaaagcacaagaatcacaatcagaactaaaaccaagtat 1808


>Contig-U10957-1 (Contig-U10957-1Q) /CSM_Contig/Contig-U10957-1Q.Seq.d
Length = 1366

Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus


Query: 1347 ccaacaccaacaccaacaactacaaattcaa 1377
||||||||||||||||| ||||||| |||||
Sbjct: 273 ccaacaccaacaccaactactacaacttcaa 303


Score = 34.2 bits (17), Expect = 0.51
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1348 caacaccaacaccaaca 1364
|||||||||||||||||
Sbjct: 268 caacaccaacaccaaca 284


>Contig-U10941-1 (Contig-U10941-1Q) /CSM_Contig/Contig-U10941-1Q.Seq.d
Length = 1119

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1347 ccaacaccaacaccaacaactac 1369
|||||||||||||||||||||||
Sbjct: 79 ccaacaccaacaccaacaactac 101


Score = 36.2 bits (18), Expect = 0.13
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1347 ccaacaccaacaccaaca 1364
||||||||||||||||||
Sbjct: 73 ccaacaccaacaccaaca 90


Score = 34.2 bits (17), Expect = 0.51
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1348 caacaccaacaccaaca 1364
|||||||||||||||||
Sbjct: 68 caacaccaacaccaaca 84


Score = 34.2 bits (17), Expect = 0.51
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1348 caacaccaacaccaaca 1364
|||||||||||||||||
Sbjct: 134 caacaccaacaccaaca 150


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,992
Number of Sequences: 6905
Number of extensions: 42992
Number of successful extensions: 4467
Number of sequences better than 10.0: 577
length of query: 1808
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1792
effective length of database: 5,564,391
effective search space: 9971388672
effective search space used: 9971388672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
(1808 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ424541) Dictyostelium discoideum cDNA clone:ddv52e21, 5' ... 1231 0.0 1
(BJ422423) Dictyostelium discoideum cDNA clone:ddv45j23, 5' ... 1150 0.0 1
(BJ420183) Dictyostelium discoideum cDNA clone:ddv38b16, 5' ... 1043 0.0 1
(BJ395780) Dictyostelium discoideum cDNA clone:dds40k05, 5' ... 1023 0.0 2
(BJ438795) Dictyostelium discoideum cDNA clone:ddv38b16, 3' ... 517 0.0 6
(BJ443396) Dictyostelium discoideum cDNA clone:ddv52e21, 3' ... 464 0.0 6
(BJ404396) Dictyostelium discoideum cDNA clone:dds28k12, 3' ... 464 0.0 2
(BJ441165) Dictyostelium discoideum cDNA clone:ddv45j23, 3' ... 464 0.0 2
(BJ444314) Dictyostelium discoideum cDNA clone:ddv55p24, 3' ... 444 e-135 2
(BH137758) ENTNP55TF Entamoeba histolytica Sheared DNA Entam... 62 8e-05 1
(BH133787) ENTOQ50TR Entamoeba histolytica Sheared DNA Entam... 62 8e-05 1
(CX090755) EHAEI75TR E. histolytica Normalized cDNA library ... 62 8e-05 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 40 0.017 16
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.032 18
(AC179501) Strongylocentrotus purpuratus clone R3-64I16, WOR... 36 0.049 11
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 38 0.077 12
(AY333897) Cotesia acuminata from Spain NADH dehydrogenase s... 48 0.11 2
(EY353776) CAWZ2302.fwd CAWZ Helobdella robusta Primary Late... 38 0.11 3
(EY387653) CAXA6879.fwd CAXA Helobdella robusta Subtracted L... 38 0.13 3
(EY349681) CAWZ17182.fwd CAWZ Helobdella robusta Primary Lat... 38 0.13 3
(EY374300) CAXA15001.fwd CAXA Helobdella robusta Subtracted ... 38 0.13 3
(EY361966) CAWZ800.fwd CAWZ Helobdella robusta Primary Late ... 38 0.13 3
(EY386553) CAXA6282.fwd CAXA Helobdella robusta Subtracted L... 38 0.14 3
(EY346923) CAWZ15341.fwd CAWZ Helobdella robusta Primary Lat... 38 0.14 3
(EY353706) CAWZ2259.fwd CAWZ Helobdella robusta Primary Late... 38 0.14 3
(EY379797) CAXA17988.fwd CAXA Helobdella robusta Subtracted ... 38 0.14 3
(EY378057) CAXA17059.fwd CAXA Helobdella robusta Subtracted ... 38 0.14 3
(EY381921) CAXA3756.fwd CAXA Helobdella robusta Subtracted L... 38 0.14 3
(EY391709) CAXA9415.fwd CAXA Helobdella robusta Subtracted L... 38 0.14 3
(EY347260) CAWZ15517.fwd CAWZ Helobdella robusta Primary Lat... 38 0.15 3
(AY429682) Dictyostelium discoideum dusty protein kinase mRN... 40 0.19 2
(AY429683) Dictyostelium discoideum dusty protein kinase gen... 40 0.20 2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 40 0.24 7
(AY934834) Cotesia plutellae clone 501-510 NADH dehydrogenas... 40 0.25 2
(AY934846) Cotesia plutellae clone 641-646 NADH dehydrogenas... 40 0.25 2
(AY934845) Cotesia plutellae clone 631-636 NADH dehydrogenas... 40 0.25 2
(AY934844) Cotesia plutellae clone 611-620 NADH dehydrogenas... 40 0.25 2
(AY934842) Cotesia plutellae clone 581-583 NADH dehydrogenas... 40 0.25 2
(AY934840) Cotesia plutellae clone 561-570 NADH dehydrogenas... 40 0.25 2
(AY934839) Cotesia plutellae clone 551-560 NADH dehydrogenas... 40 0.25 2
(AY934838) Cotesia plutellae clone 541-550 NADH dehydrogenas... 40 0.25 2
(AY934837) Cotesia plutellae clone 531-540 NADH dehydrogenas... 40 0.25 2
(AY934836) Cotesia plutellae clone 521-530 NADH dehydrogenas... 40 0.25 2
(AY934835) Cotesia plutellae clone 511-520 NADH dehydrogenas... 40 0.25 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 44 0.28 14
(ED788212) GM_WBb0170G10.f GM_WBb Glycine max genomic clone ... 50 0.30 1
(ED731953) GM_WBb0089G22.f GM_WBb Glycine max genomic clone ... 50 0.30 1
(ED731921) GM_WBb0089G06.f GM_WBb Glycine max genomic clone ... 50 0.30 1
(ED643628) GM_WBa0056F14.r GM_WBa Glycine max genomic clone ... 50 0.30 1
(CG823559) SOYDT89TV LargeInsertSoybeanGenLib Glycine max ge... 50 0.30 1
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 40 0.33 11
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.34 19
(AY333908) Cotesia melitaearum from Spain NADH dehydrogenase... 40 0.38 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 36 0.45 13
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 0.47 18
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 42 0.48 7
(DV608068) EST1211064 Glossina morsitans morsitans Fat body ... 44 0.52 3
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 36 0.56 10
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 0.58 13
(AC188237) Saimiri boliviensis boliviensis clone CH254-333A1... 38 0.63 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 0.70 15
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 46 0.71 20
(FE186744) LV_NC_RA42J15f Litopenaeus vannamei nerve cord cD... 38 0.83 2
(FE190062) LV_NC_RA51K24f Litopenaeus vannamei nerve cord cD... 38 0.84 2
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 34 0.87 23
(AC111691) Rattus norvegicus clone CH230-68I7, WORKING DRAFT... 38 0.95 10
(AY082376) Dictyostelium discoideum ABC transporter ABCC.14 ... 34 0.96 5
(CS374412) Sequence 515 from Patent WO2006034879. 48 1.2 1
(AL590784) Human DNA sequence from clone RP11-260I7 on chrom... 48 1.2 1
(AC179401) Strongylocentrotus purpuratus clone R3-60L3, WORK... 48 1.2 1
(AC179256) Strongylocentrotus purpuratus clone R3-42M3, WORK... 48 1.2 1
(EJ803175) 1093017441923 Global-Ocean-Sampling_GS-30-02-01-1... 48 1.2 1
(DX522066) GH_MBb0036A01r GH_MBb Gossypium hirsutum genomic ... 48 1.2 1
(EH697328) CCIM9145.b1_B08.ab1 CCI(LMS) chicory Cichorium in... 48 1.2 1
(DY894567) CeleSEQ14170 Cunninghamella elegans pBluescript (... 48 1.2 1
(DY893304) CeleSEQ12603 Cunninghamella elegans pBluescript (... 48 1.2 1
(DY892916) CeleSEQ12051 Cunninghamella elegans pBluescript (... 48 1.2 1
(DY891199) CeleSEQ7873 Cunninghamella elegans pBluescript (E... 48 1.2 1
(DY890951) CeleSEQ7447 Cunninghamella elegans pBluescript (E... 48 1.2 1
(DY889348) CeleSEQ10866 Cunninghamella elegans pBluescript (... 48 1.2 1
(DY889151) CeleSEQ6694 Cunninghamella elegans pBluescript (E... 48 1.2 1
(DY887462) CeleSEQ3801 Cunninghamella elegans pBluescript (E... 48 1.2 1
(DY887205) CeleSEQ3130 Cunninghamella elegans pBluescript (E... 48 1.2 1
(DY886361) CeleSEQ1985 Cunninghamella elegans pBluescript (E... 48 1.2 1
(DY885712) CeleSEQ1110 Cunninghamella elegans pBluescript (E... 48 1.2 1
(DY885401) CeleSEQ666 Cunninghamella elegans pBluescript (Ec... 48 1.2 1
(AL713894) Mouse DNA sequence from clone RP23-48J18 on chrom... 38 1.2 7
(EY356728) CAWZ4514.fwd CAWZ Helobdella robusta Primary Late... 34 1.6 3
(DX547660) GH_MBb0057O19f GH_MBb Gossypium hirsutum genomic ... 40 1.8 2
(CP000393) Trichodesmium erythraeum IMS101, complete genome. 32 1.8 2
(EK353985) 1095468342949 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.9 2
(AC101510) Mus musculus chromosome 3, clone RP23-190B7, comp... 38 1.9 8
(AC101483) Mus musculus clone RP23-188H14, LOW-PASS SEQUENCE... 40 1.9 2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 32 2.1 13
(AM445711) Vitis vinifera contig VV78X244109.2, whole genome... 38 2.4 4
(BX005076) Zebrafish DNA sequence from clone DKEY-7N16 in li... 44 2.5 5
(DD061358) Methods and nucleic acids for the analysis of he... 36 2.7 3
(AX598920) Sequence 260 from Patent WO02077272. 36 2.7 3
(AC128025) Rattus norvegicus clone CH230-124G14, *** SEQUENC... 38 2.7 9
(AC121768) Mus musculus BAC clone RP23-339H16 from 15, compl... 38 3.0 6

>(BJ424541) Dictyostelium discoideum cDNA clone:ddv52e21, 5' end,
single read.
Length = 622

Score = 1231 bits (621), Expect = 0.0
Identities = 621/621 (100%)
Strand = Plus / Plus


Query: 370 ctttaatttgtgccgcaggttgtactttaagaacattgggtaaacatttctatgctccaa 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttaatttgtgccgcaggttgtactttaagaacattgggtaaacatttctatgctccaa 60


Query: 430 atgcaagtgttagtatttatggtggagtaggttgggttattcaagataccttggtttccg 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgcaagtgttagtatttatggtggagtaggttgggttattcaagataccttggtttccg 120


Query: 490 gattttatttagactatacactctccctacttctcatgtcaaatgctacaatgttggttg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gattttatttagactatacactctccctacttctcatgtcaaatgctacaatgttggttg 180


Query: 550 aaaatgcatttattgatctctattctcaatgggatgtcatttctcaaagtactattgtta 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaatgcatttattgatctctattctcaatgggatgtcatttctcaaagtactattgtta 240


Query: 610 tcaataacactcttaataaatttgtagtaaaagatggatcacttttaaatattaaagatt 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaataacactcttaataaatttgtagtaaaagatggatcacttttaaatattaaagatt 300


Query: 670 caaaaatatcaatttacaatagtatgctcttgactggaaataaaaccaaattaacttttg 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaaaatatcaatttacaatagtatgctcttgactggaaataaaaccaaattaacttttg 360


Query: 730 aaaatagtattgttgattttggattggttaaattagttccaattagtagatgggttgata 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaatagtattgttgattttggattggttaaattagttccaattagtagatgggttgata 420


Query: 790 gtcaattggtctttttaaatagtgtatttgattgtaaacatcaaattattgttagtggaa 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcaattggtctttttaaatagtgtatttgattgtaaacatcaaattattgttagtggaa 480


Query: 850 gttcattaacaagtttgatacttatcaaagaaaattcaaatgtaacttttaatgatgagg 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttcattaacaagtttgatacttatcaaagaaaattcaaatgtaacttttaatgatgagg 540


Query: 910 ttgaatttgatggtgattctttattgggtctttataattccaaattgacaacaggtaaat 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgaatttgatggtgattctttattgggtctttataattccaaattgacaacaggtaaat 600


Query: 970 cattgttatttgatggtgcaa 990
|||||||||||||||||||||
Sbjct: 601 cattgttatttgatggtgcaa 621

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,086,417,935
Number of extensions: 130105614
Number of successful extensions: 10490131
Number of sequences better than 10.0: 189
Length of query: 1808
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1784
Effective length of database: 97,308,875,965
Effective search space: 173599034721560
Effective search space used: 173599034721560
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
(1808 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116957_68(AC116957|pid:none) Dictyostelium discoideum chromoso... 83 4e-14
AC116989_1(AC116989|pid:none) Dictyostelium discoideum chromosom... 50 3e-04
AX553782_1(AX553782|pid:none) Sequence 116 from Patent WO0207550... 43 0.033
AC116551_59(AC116551|pid:none) Dictyostelium discoideum chromoso... 42 0.057
CP000678_1586(CP000678|pid:none) Methanobrevibacter smithii ATCC... 42 0.096
CP001173_554(CP001173|pid:none) Helicobacter pylori G27, complet... 41 0.16
CP000442_888(CP000442|pid:none) Burkholderia ambifaria AMMD chro... 40 0.28
CP000234_29(CP000234|pid:none) Lactobacillus salivarius UCC118 p... 40 0.28
EU413991_1(EU413991|pid:none) Oryzias latipes piwi-like protein ... 39 0.82
CP001133_281(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ... 39 0.82
AM180355_2981(AM180355|pid:none) Clostridium difficile 630 compl... 38 1.4
CP001027_646(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch... 38 1.4
CP000271_2816(CP000271|pid:none) Burkholderia xenovorans LB400 c... 37 1.8
AY281681_1(AY281681|pid:none) HIV-1 isolate 1133v2 clone W8-15B ... 37 3.1
AY281686_1(AY281686|pid:none) HIV-1 isolate 1133v3 clone D15-21 ... 37 3.1
AY281682_1(AY281682|pid:none) HIV-1 isolate 1133v2 clone W8-22B ... 37 3.1
CP001068_1826(CP001068|pid:none) Ralstonia pickettii 12J chromos... 37 3.1
AL022347_10(AL022347|pid:none) Arabidopsis thaliana DNA chromoso... 37 3.1
CP001217_912(CP001217|pid:none) Helicobacter pylori P12, complet... 36 4.1
CP000102_880(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 36 4.1
AE017263_158(AE017263|pid:none) Mesoplasma florum L1 complete ge... 36 4.1
CP000554_2482(CP000554|pid:none) Prochlorococcus marinus str. MI... 36 4.1
(Q54ED6) RecName: Full=Probable polyketide synthase 41; ... 36 4.1
AY281674_1(AY281674|pid:none) HIV-1 isolate 1133v2 clone D15-20 ... 36 4.1
CP000094_3752(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 36 5.3
CP000058_308(CP000058|pid:none) Pseudomonas syringae pv. phaseol... 36 5.3
AF216702_1(AF216702|pid:none) Pseudomonas fluorescens PrtB (prtB... 35 6.9
CR382133_106(CR382133|pid:none) Debaryomyces hansenii strain CBS... 35 6.9
CP000615_1371(CP000615|pid:none) Burkholderia vietnamiensis G4 c... 35 6.9
AE000666_712(AE000666|pid:none) Methanothermobacter thermautotro... 35 6.9
F69195(F69195)cell surface glycoprotein (s-layer protein) - Meth... 35 6.9
AE008384_1927(AE008384|pid:none) Methanosarcina mazei strain Goe... 35 9.0
CP000075_3732(CP000075|pid:none) Pseudomonas syringae pv. syring... 35 9.0
AF525505_1(AF525505|pid:none) Fusobacterium nucleatum outer memb... 35 9.0
AY281685_1(AY281685|pid:none) HIV-1 isolate 1133v3 clone W8-45B ... 35 9.0

>AC116957_68(AC116957|pid:none) Dictyostelium discoideum chromosome 2
map 1685067-2090751 strain AX4, complete sequence.
Length = 788

Score = 82.8 bits (203), Expect = 4e-14
Identities = 92/423 (21%), Positives = 169/423 (39%), Gaps = 41/423 (9%)
Frame = +3

Query: 417 FYAPNASVSIYGGVGWVIQDTLVSGFYLDYTLSLL---LMSNATMLVENAFIDLYSQW-- 581
FY + +YG + Q SG ++ +++ ++ N T V N + + + +
Sbjct: 308 FYLNQSQFLVYGHASFSSQSYFDSGLFVVNNIAIWNGWVLGNYTNFVVNGSLVINTSYAS 367

Query: 582 ----DVISQSTIVINNTLN-----------KFVVKDGSLLNIKDSKISIYNSMLLTGNKT 716
++S I +N L F+V D ++L + S+ I + L
Sbjct: 368 MVESHIVSIGDITVNGILTTTNTRLYVDQGNFIVSDNAILQLIGSEARINSGQLKIHPLA 427

Query: 717 KLTFENSIVDFGLVKLVPISRWVDSQ-LVFLNSVFDCKHQI----IVSGSSLTSLILIKE 881
+ NS I+ VD+ V+L+S D +Q + SG T+ +K
Sbjct: 428 YIDIVNS-------SFTLITGNVDTLGNVYLDSSSDLSNQNGTYNLYSGIYYTNDTTVKS 480

Query: 882 NSNVTFNDEVEFDGDSLLGLYNSKLTTGKSLLFDGAXXXXSKETSIKTYNQXXXXXXXXX 1061
N+ ND V ++ + + + +G + + N+
Sbjct: 481 NNVTVLNDGVFNVANNSVQINVAFTNSGNNSNIAQLNINNNTLFIYDFKNENGGEITLNG 540

Query: 1062 XXXHSDETINLSNGSLYGIGTINSSLSVSDGIVGDKAIIGTLNVSGEL-----NSENGQF 1226
SD +I L+ GS+ G G+ N+S++ S+G G K+ + N++G+ ++ N +
Sbjct: 541 GTFSSDNSIQLNGGSIKGSGSFNTSINQSNGQFGSKSTVNNFNITGDFIQSNNSNNNTKI 600

Query: 1227 IFTLDSLTNSTFINIGKNATINNSTLIIRINQYFIDXXXXXXXXXXXXXXXXXXQVFNQT 1406
I +DSL + + +NIG A IN + IRINQ + Q + +
Sbjct: 601 IIVIDSLDSFSTLNIGNLADING-IIEIRINQDILKNLNNNNNNNNNLESNLSSQSGSSS 659

Query: 1407 ---------LINYENLSGTGFGEIKFGTYDPTSGEEKSLP--SCYSASSSNSGKNFGLLI 1553
LI+Y + + F I+F +YDP SG E + SC S + +F +L+
Sbjct: 660 DGIKSASFNLISYNSKTSNSFNNIQFKSYDPKSGSESDIDKNSCIQPKSKSGSSSFSVLL 719

Query: 1554 RSD 1562
+
Sbjct: 720 EQN 722

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,386,104,949
Number of extensions: 43025801
Number of successful extensions: 112817
Number of sequences better than 10.0: 35
Number of HSP's gapped: 112733
Number of HSP's successfully gapped: 36
Length of query: 602
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 467
Effective length of database: 614,245,399
Effective search space: 286852601333
Effective search space used: 286852601333
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.93 gvh: 0.46 alm: 0.23 top: 0.33 tms: 0.13 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: endoplasmic reticulum
12.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for Contig-U12435-1 is end

VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0