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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12428-1
Contig ID Contig-U12428-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12428-1 (Contig-U12428-1Q) /CSM_Contig/Contig-U12428-1Q.Seq.d
GGTTTTGAAATTGAAATTTTATTTTCTTTTATTAGTATCTCTTTGTAATT
AAGTTTTTGGATTTTTTTTTTTACAAAAAGGATTTGAAACAGAAGGATAT
ATCAAACAGAAAGTTTTTGAAAAAAAAAAAAAAGGAAAAAANTTTTTTTT
TTTTTNAAAANTNAAATANTTTTTTTTTAAAACCCCNTAAAAAAAAA---
-------CAAATTAAAGCTAGAATTAAATCTGAATCTTTAATGAAAACAC
CATCACCAGCACAACAACAACAACATCAACAACAACAACATCAACAAGGT
AGACCAAACGGTGCTCAATTCACTCCATATCAATCTTCAGCTGCATCTGG
TGCTGCTTCATCACATAGATCTTCATATTATAATGGTCAAAAACAATGGT
CAAGAAATTATAACAATAACAATAACAGTAACAGTAACTATGAACAACAA
CAACAAGCCCAACAACAACAACAACAACAACAACAAGCCCAACAACAACA
ACAACAACAACAACCAGCTACCACCACTGGAAATGGTGAACGTAAACACT
ATCAACGTGGTCCAAAAGATTCATCAAGACCACCAAGAAGAGATTTTAAT
AATACATATAACAACAACAACAATAATAATAATAGTCATTTTTCAAATAG
CAATAATAATAGTACTACCCCAAAAGAAAATATAAATAATAATACAGAGA
ATACAGAAAATAAACCAACTAATACAAATACAGAAAAGCGTCATACACAA
AGAAAACCAAAACATATTTCACACCATAATAATAATAATAGCAATAATAA
TAGCAATAATAATAATACAACCACCTCAACTGCTACCACTTCAACCCCAA
CCACAACTACCGCTTCACCATCATCACCAACCACCACTACAACCACTACA
ACCACCACTGCTACAACTTCAACTACCACCACCAATACCGAAAGAGAATC
ATCAGTTTCTAATAAACCAAAATCACATCACAATAAATCAAAGAAATCTA
ATCATTCATCAAACGATGAACATAAAGAGAAACACAGCCAAAAGGCAGCA
ACTGTTGTTGTACCACCAGGTCCACAACATTTCCCACCTTTAAATGGAAG
TGAACAACAAACATCTGTTGTTGAAACTAAAAAAATGGAATGGGGTCCAG
CCGATAAAAAAGCGTATTACCAGTTGAAACCACTGTAGTTTCACCACCAA
CAACAACAACAACAACTCCAGTTGCACCAACTTCAAATGTTGCTGCTTCA
TCATCATCAACTGCTACCGCTACTCCAACTACAACAACCACCACTCAAAC
CGCAGCTTCAACCAATGCTCCATCAAACAAAAAATCAACCACTCAATCAT
CTCAACCAAAGAAATCACCATCAAAAGTTGAAGATAAATCGAAAACCGCA
CCAACTCCAGCTGCCCCAGTCACCACTGCCACCACCACTGATTCTTCAAA
CGAAAAGAAGCAACCAACCTATGCTGATATGATCGCTATGGCATCAAATA
ACACTTTACCAGTTGCTCCAGTCGTCACTGTTGTCACTGAAACCAATGCC
ACTCCAGTCGAACAACAATAAACTTATCAATAACCAACAAAAAAAAAAAA
AAAAAAA
Gap gap included
Contig length 1597
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 9
Number of EST 14
Link to clone list U12428
List of clone(s) 

est1=VHD390F,1,129
est2=VHO262F,9,129
est3=VFF541F,29,198
est4=SLK579F,199,390
est5=SLK660F,199,716
est6=SLB117F,271,960
est7=VFJ288Z,881,1415
est8=VHD390Z,920,1362
est9=VHO262Z,931,1370
est10=SLB117Z,1028,1585
est11=SLK579Z,1334,1585
est12=SLK660Z,1377,1585
est13=SLD513F,1382,1599
est14=SLD518E,1382,1584
Translated Amino Acid sequence 
f*n*nfiffy*YLFVIKFLDFFFYKKDLKQKDISNRKFLKKKKKEKXFFFFXXXNXFFLK
PXKKK---

---QIKARIKSESLMKTPSPAQQQQHQQQQHQQGRPNGAQFTPYQSSAASGAASSHRSSY
YNGQKQWSRNYNNNNNSNSNYEQQQQAQQQQQQQQQAQQQQQQQQPATTTGNGERKHYQR
GPKDSSRPPRRDFNNTYNNNNNNNNSHFSNSNNNSTTPKENINNNTENTENKPTNTNTEK
RHTQRKPKHISHHNNNNSNNNSNNNNTTTSTATTSTPTTTTASPSSPTTTTTTTTTTATT
STTTTNTERESSVSNKPKSHHNKSKKSNHSSNDEHKEKHSQKAATVVVPPGPQHFPPLNG
SEQQTSVVETKKMEWGPADKKAYYQLKPL*fhhqqqqqqlqlhqlqmlllhhhqllpllq
lqqpplkpqlqpmlhqtknqplnhlnqrnhhqklkinrkphqlqlpqsplppplilqtkr
snqpmli*slwhqitlyqllqssllslkpmplqsnnnklinnqqkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
gfeieilfsfisisl*lsfwiffftkri*nrriyqtesf*kkkkrkkxfffxkxxixff*
npxkk---

---QIKARIKSESLMKTPSPAQQQQHQQQQHQQGRPNGAQFTPYQSSAASGAASSHRSSY
YNGQKQWSRNYNNNNNSNSNYEQQQQAQQQQQQQQQAQQQQQQQQPATTTGNGERKHYQR
GPKDSSRPPRRDFNNTYNNNNNNNNSHFSNSNNNSTTPKENINNNTENTENKPTNTNTEK
RHTQRKPKHISHHNNNNSNNNSNNNNTTTSTATTSTPTTTTASPSSPTTTTTTTTTTATT
STTTTNTERESSVSNKPKSHHNKSKKSNHSSNDEHKEKHSQKAATVVVPPGPQHFPPLNG
SEQQTSVVETKKMEWGPADKKAYYQLKPL*fhhqqqqqqlqlhqlqmlllhhhqllpllq
lqqpplkpqlqpmlhqtknqplnhlnqrnhhqklkinrkphqlqlpqsplppplilqtkr
snqpmli*slwhqitlyqllqssllslkpmplqsnnnklinnqqkkkkk

Frame B:
vlklkfyflllvslcn*vfgffflqkgfetegyikqkvfekkkkgkxffffxkxkxfffk
tp*kk---

---klklelnlnl**khhhqhnnnninnnninkvdqtvlnslhinlqlhlvllhhidlhi
imvknngqeiitititvtvtmnnnnkpnnnnnnnnkpnnnnnnnnqlpplemvnvntinv
vqkihqdhqeeiliihittttiiiivifqiaiiivlpqkki*iiiqriqkinqliqiqks
vihkenqnifhtiiiiiaiiiaiiiiqppqllplqpqpqlplhhhhqpplqplqppllql
qlpppipkenhqflinqnhitinqrnliihqtmnikrntakrqqlllyhqvhnishl*me
vnnkhlllklkkwngvqpikkrits*nhcsfttnnnnnnssctnfkcccfiiincyrysn
ynnhhsnrsfnqcsikqkinhsiistkeitiks*r*ienrtnsscpshhchhh*ffkrke
atnlc*ydrygik*hftscssrhcch*nqchssrttinlsitnkkkkkk

Frame C:
f*n*nfiffy*YLFVIKFLDFFFYKKDLKQKDISNRKFLKKKKKEKXFFFFXXXNXFFLK
PXKKK---

---n*s*n*i*ifnentitstttttsttttstr*tkrcsihsisifsciwccfit*ifil
*wsktmvkkl*q*q*q*q*l*ttttspttttttttspttttttttsyhhwkw*t*tlstw
skrfikttkkrf**yi*qqqq****sffk*q***yypkrkyk**yreyrk*tn*ykyrka
sytkktktyftp*****q***q***ynhlncyhfnpnhnyrftiitnhhynhynhhcynf
nyhhqyrkriisf**tkitsq*ikei*sfikr*t*retqpkgsncccttrsttfptfkwk
*ttnicc*n*kngmgssr*ksvlpvettvvsppttttttpvaptsnvaasssstatatpt
tttttqtaastnapsnkksttqssqpkkspskvedksktaptpaapvttatttdssnekk
qptyadmiamasnntlpvapvvtvvtetnatpveqq*tyq*ptkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12428-1 (Contig-U12428-1Q)
/CSM_Contig/Contig-U12428-1Q.Seq.d
         (1607 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12428-1 (Contig-U12428-1Q) /CSM_Contig/Conti...   737  0.0
Contig-U14435-1 (Contig-U14435-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12846-1 (Contig-U12846-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12786-1 (Contig-U12786-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12502-1 (Contig-U12502-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U12193-1 (Contig-U12193-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U10818-1 (Contig-U10818-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U09002-1 (Contig-U09002-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U08943-1 (Contig-U08943-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U08768-1 (Contig-U08768-1Q) /CSM_Contig/Conti...    40  0.007

>Contig-U12428-1 (Contig-U12428-1Q) /CSM_Contig/Contig-U12428-1Q.Seq.d
          Length = 1607

 Score =  737 bits (372), Expect = 0.0
 Identities = 372/372 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1217 tccagttgcaccaacttcaaatgttgctgcttcatcatcatcaactgctaccgctactcc 1276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 tccagttgcaccaacttcaaatgttgctgcttcatcatcatcaactgctaccgctactcc 1276

                                                                        
Query: 1277 aactacaacaaccaccactcaaaccgcagcttcaaccaatgctccatcaaacaaaaaatc 1336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 aactacaacaaccaccactcaaaccgcagcttcaaccaatgctccatcaaacaaaaaatc 1336

                                                                        
Query: 1337 aaccactcaatcatctcaaccaaagaaatcaccatcaaaagttgaagataaatcgaaaac 1396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 aaccactcaatcatctcaaccaaagaaatcaccatcaaaagttgaagataaatcgaaaac 1396

                                                                        
Query: 1397 cgcaccaactccagctgccccagtcaccactgccaccaccactgattcttcaaacgaaaa 1456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1397 cgcaccaactccagctgccccagtcaccactgccaccaccactgattcttcaaacgaaaa 1456

                                                                        
Query: 1457 gaagcaaccaacctatgctgatatgatcgctatggcatcaaataacactttaccagttgc 1516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457 gaagcaaccaacctatgctgatatgatcgctatggcatcaaataacactttaccagttgc 1516

                                                                        
Query: 1517 tccagtcgtcactgttgtcactgaaaccaatgccactccagtcgaacaacaataaactta 1576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1517 tccagtcgtcactgttgtcactgaaaccaatgccactccagtcgaacaacaataaactta 1576

                        
Query: 1577 tcaataaccaac 1588
            ||||||||||||
Sbjct: 1577 tcaataaccaac 1588


 Score =  492 bits (248), Expect = e-139
 Identities = 262/269 (97%)
 Strand = Plus / Plus

                                                                        
Query: 929  ccaccaataccgaaagagaatcatcagtttctaataaaccaaaatcacatcacaataaat 988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  ccaccaataccgaaagagaatcatcagtttctaataaaccaaaatcacatcacaataaat 988

                                                                        
Query: 989  caaagaaatctaatcattcatcaaacgatgaacataaagagaaacacagccaaaaggcag 1048
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989  caaagaaatctaatcattcatcaaacgatgaacataaagagaaacacagccaaaaggcag 1048

                                                                        
Query: 1049 caactgttgttgtaccaccaggtccacaacatttcccacctttaaatggaagtgaacaac 1108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 caactgttgttgtaccaccaggtccacaacatttcccacctttaaatggaagtgaacaac 1108

                                                                        
Query: 1109 aaacatctgttgttgaaactnnnnnnntggaatggggtccagccgataaaaaagcgtatt 1168
            ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 1109 aaacatctgttgttgaaactaaaaaaatggaatggggtccagccgataaaaaagcgtatt 1168

                                         
Query: 1169 accagttgaaaccactgtagtttcaccac 1197
            |||||||||||||||||||||||||||||
Sbjct: 1169 accagttgaaaccactgtagtttcaccac 1197


 Score =  287 bits (145), Expect = 2e-77
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                       
Query: 298 ggtagaccaaacggtgctcaattcactccatatcaatcttcagctgcatctggtgctgct 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggtagaccaaacggtgctcaattcactccatatcaatcttcagctgcatctggtgctgct 357

                                                                       
Query: 358 tcatcacatagatcttcatattataatggtcaaaaacaatggtcaagaaattataacaat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcatcacatagatcttcatattataatggtcaaaaacaatggtcaagaaattataacaat 417

                                    
Query: 418 aacaataacagtaacagtaactatg 442
           |||||||||||||||||||||||||
Sbjct: 418 aacaataacagtaacagtaactatg 442


 Score =  170 bits (86), Expect = 3e-42
 Identities = 108/119 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttttgaaattgaaattttattttcttttattagtatctctttgtaattaagtttttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggttttgaaattgaaattttattttcttttattagtatctctttgtaattaagtttttgg 60

                                                                      
Query: 61  annnnnnnnnnnacaaaaaggatttgaaacagaaggatatatcaaacagaaagtttttg 119
           |           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttttttttttacaaaaaggatttgaaacagaaggatatatcaaacagaaagtttttg 119


 Score =  161 bits (81), Expect = 3e-39
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                       
Query: 515 cagctaccaccactggaaatggtgaacgtaaacactatcaacgtggtccaaaagattcat 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cagctaccaccactggaaatggtgaacgtaaacactatcaacgtggtccaaaagattcat 574

                                
Query: 575 caagaccaccaagaagagatt 595
           |||||||||||||||||||||
Sbjct: 575 caagaccaccaagaagagatt 595


 Score =  105 bits (53), Expect = 1e-22
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                
Query: 208 caaattaaagctagaattaaatctgaatctttaatgaaaacaccatcaccagc 260
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 caaattaaagctagaattaaatctgaatctttaatgaaaacaccatcaccagc 260


 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                           
Query: 818 caaccacctcaactgctaccacttcaaccccaaccacaactaccgctt 865
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 caaccacctcaactgctaccacttcaaccccaaccacaactaccgctt 865


 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                  
Query: 635 gtcatttttcaaatagcaataataatagtactaccccaa 673
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gtcatttttcaaatagcaataataatagtactaccccaa 673


 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 738 gcgtcatacacaaagaaaaccaaaacatatttcacacc 775
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gcgtcatacacaaagaaaaccaaaacatatttcacacc 775


 Score = 34.2 bits (17), Expect = 0.45
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 646 aatagcaataataatag 662
           |||||||||||||||||
Sbjct: 787 aatagcaataataatag 803


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 646 aatagcaataataata 661
           ||||||||||||||||
Sbjct: 799 aatagcaataataata 814


>Contig-U14435-1 (Contig-U14435-1Q) /CSM_Contig/Contig-U14435-1Q.Seq.d
          Length = 619

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 516 ataacaataacaataacaataacaataac 544


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 510 ataacaataacaataacaataacaataac 538


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 522 ataacaataacaataacaataacaataac 550


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 528 ataacaataacaataacaataacaataac 556


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 534 ataacaataacaataacaataacaataac 562


 Score = 40.1 bits (20), Expect = 0.007
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 410 ataacaataacaataacagtaaca 433
           |||||||||||||||||| |||||
Sbjct: 540 ataacaataacaataacaataaca 563


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                   
Query: 415 aataacaataacagtaacagtaac 438
           ||||||||||||| ||||| ||||
Sbjct: 509 aataacaataacaataacaataac 532


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 410 ataacaataacaataa 425
           ||||||||||||||||
Sbjct: 552 ataacaataacaataa 567


>Contig-U12846-1 (Contig-U12846-1Q) /CSM_Contig/Contig-U12846-1Q.Seq.d
          Length = 791

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 652 ataacaataacaataacaataacaataac 680


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 670 ataacaataacaataacaataacaataac 698


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 640 ataacaataacaataacaataacaataac 668


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 622 ataacaataacaataacaataacaataac 650


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 646 ataacaataacaataacaataacaataac 674


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 628 ataacaataacaataacaataacaataac 656


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 634 ataacaataacaataacaataacaataac 662


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 658 ataacaataacaataacaataacaataac 686


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 410 ataacaataacaataacagtaacagtaac 438
           |||||||||||||||||| ||||| ||||
Sbjct: 664 ataacaataacaataacaataacaataac 692


 Score = 40.1 bits (20), Expect = 0.007
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 410 ataacaataacaataacagtaaca 433
           |||||||||||||||||| |||||
Sbjct: 676 ataacaataacaataacaataaca 699


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 410 ataacaataacaataa 425
           ||||||||||||||||
Sbjct: 688 ataacaataacaataa 703


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                   
Query: 415 aataacaataacagtaacagtaac 438
           ||||||||||||| ||||| ||||
Sbjct: 621 aataacaataacaataacaataac 644


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,687
Number of Sequences: 6905
Number of extensions: 18687
Number of successful extensions: 3084
Number of sequences better than 10.0: 437
length of query: 1607
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1591
effective length of database: 5,564,391
effective search space: 8852946081
effective search space used: 8852946081
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12428-1 (Contig-U12428-1Q) /CSM_Contig/Contig-U12428-1Q.Seq.d
         (1607 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU033512) Dictyostelium discoideum slug cDNA, clone SLB117.      420   0.0    4
(BJ432820) Dictyostelium discoideum cDNA clone:ddv19o22, 3' ...   367   0.0    5
(BJ438392) Dictyostelium discoideum cDNA clone:ddv37d23, 3' ...   355   e-177  4
(BJ445497) Dictyostelium discoideum cDNA clone:ddv59k16, 3' ...   349   e-175  4
(AU060688) Dictyostelium discoideum slug cDNA, clone SLB117.      218   e-120  5
(AU060623) Dictyostelium discoideum slug cDNA, clone SLK660.      224   e-117  3
(AU054089) Dictyostelium discoideum slug cDNA, clone SLK579.      420   e-113  1
(AU061193) Dictyostelium discoideum slug cDNA, clone SLD513.      387   e-103  1
(AU061195) Dictyostelium discoideum slug cDNA, clone SLD518.      305   3e-78  1
(AU060598) Dictyostelium discoideum slug cDNA, clone SLK579.      202   1e-72  2
(C83988) Dictyostelium discoideum slug cDNA, clone SLK660.        272   4e-72  2
(AU052556) Dictyostelium discoideum slug cDNA, clone SLD518.      200   1e-46  1
(BJ426619) Dictyostelium discoideum cDNA clone:ddv59k16, 5' ...    94   2e-14  1
(BJ419966) Dictyostelium discoideum cDNA clone:ddv37d23, 5' ...    94   2e-14  1
(BJ410359) Dictyostelium discoideum cDNA clone:ddv12a11, 5' ...    82   7e-11  1
(AC182986) Bos taurus clone CH240-188G1, WORKING DRAFT SEQUE...    36   0.15   2
(AC154430) Mus musculus BAC clone RP24-208K8 from chromosome...    44   0.28   2
(S96842) SP96=spore-coat protein {5' region} [Dictyostelium ...    38   0.71   2
(FC719990) CBBG13124.fwd CBBG Lottia gigantea 12,15,18h embr...    34   0.74   2
(FC582493) CAXP15654.fwd CAXP Lottia gigantea from head, foo...    34   0.74   2
(FC692469) CAXX3236.fwd CAXX Lottia gigantea from male gonad...    34   0.74   2
(FC676938) CAXX11638.fwd CAXX Lottia gigantea from male gona...    34   0.74   2
(FC572781) CAXP10086.fwd CAXP Lottia gigantea from head, foo...    34   0.74   2
(FC582697) CAXP1595.fwd CAXP Lottia gigantea from head, foot...    34   0.74   2
(FC765643) CBBN2611.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv...    34   0.74   2
(FC570581) CAWF9073.fwd CAWF Lottia gigantea from mantle (H)...    34   0.74   2
(FC772129) CBBN6885.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv...    34   0.74   2
(FC770929) CBBN6136.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv...    34   0.74   2
(FC733229) CBBG7745.fwd CBBG Lottia gigantea 12,15,18h embry...    34   0.74   2
(FC719207) CBBG12627.fwd CBBG Lottia gigantea 12,15,18h embr...    34   0.74   2
(FC627253) CAXT5441.fwd CAXT Lottia gigantea from mantle Lot...    34   0.75   2
(FC719070) CBBG12546.fwd CBBG Lottia gigantea 12,15,18h embr...    34   0.75   2
(FC743854) CBBI13951.fwd CBBI Lottia gigantea 26h,37h,61h La...    34   0.75   2
(FC578138) CAXP13244.fwd CAXP Lottia gigantea from head, foo...    34   0.76   2
(Z83731) Caenorhabditis elegans Cosmid M04C9.                      48   1.0    1
(BX548046) Zebrafish DNA sequence from clone DKEY-176G1 in l...    46   4.1    1
(AC157927) Mus musculus chromosome 3, clone RP24-85O24, comp...    46   4.1    1
(AC137067) Mus musculus strain C57BL/6J clone rp23-288i20, c...    46   4.1    1
(AC102370) Mus musculus chromosome 3, clone RP23-256D7, comp...    46   4.1    1
(CS604541) Sequence 3527 from Patent WO2007039234.                 46   4.1    1
(AC123670) Mus musculus chromosome 10 clone RP23-247J7 map 1...    46   4.1    1
(AC167035) Mus musculus chromosome 1 clone RP23-124M11 map 1...    46   4.1    1
(ED982199) OA_CBa0184B15.f OA_CBa Oryza australiensis genomi...    46   4.1    1
(EH088511) PMEBL86TO Perkinsus marinus large insert cDNA lib...    46   4.1    1
(EH082845) PMEAK74TO Perkinsus marinus large insert cDNA lib...    46   4.1    1
(EH072454) PMDAS28TR Perkinsus marinus small insert cDNA lib...    46   4.1    1
(EH072453) PMDAS28TO Perkinsus marinus small insert cDNA lib...    46   4.1    1
(DN041481) JGI_CABA1229.fwd NIH_XGC_tropKid1 Xenopus (Silura...    46   4.1    1
(CX598124) CT020020A10B08 Equine Articular Cartilage cDNA Li...    46   4.1    1
(CN958773) 6273_100121_3 Fundulus Heteroclitus Liver Fundulu...    46   4.1    1
(CP000826) Serratia proteamaculans 568, complete genome.           46   4.1    1

>(AU033512) Dictyostelium discoideum slug cDNA, clone SLB117.
          Length = 558

 Score =  420 bits (212), Expect(4) = 0.0
 Identities = 212/212 (100%)
 Strand = Plus / Plus


Query: 1377 gttgaagataaatcgaaaaccgcaccaactccagctgccccagtcaccactgccaccacc 1436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341  gttgaagataaatcgaaaaccgcaccaactccagctgccccagtcaccactgccaccacc 400


Query: 1437 actgattcttcaaacgaaaagaagcaaccaacctatgctgatatgatcgctatggcatca 1496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401  actgattcttcaaacgaaaagaagcaaccaacctatgctgatatgatcgctatggcatca 460


Query: 1497 aataacactttaccagttgctccagtcgtcactgttgtcactgaaaccaatgccactcca 1556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461  aataacactttaccagttgctccagtcgtcactgttgtcactgaaaccaatgccactcca 520


Query: 1557 gtcgaacaacaataaacttatcaataaccaac 1588
            ||||||||||||||||||||||||||||||||
Sbjct: 521  gtcgaacaacaataaacttatcaataaccaac 552

 Score =  204 bits (103), Expect(4) = 0.0
 Identities = 103/103 (100%)
 Strand = Plus / Plus


Query: 1217 tccagttgcaccaacttcaaatgttgctgcttcatcatcatcaactgctaccgctactcc 1276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tccagttgcaccaacttcaaatgttgctgcttcatcatcatcaactgctaccgctactcc 240


Query: 1277 aactacaacaaccaccactcaaaccgcagcttcaaccaatgct 1319
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  aactacaacaaccaccactcaaaccgcagcttcaaccaatgct 283

 Score =  182 bits (92), Expect(4) = 0.0
 Identities = 92/92 (100%)
 Strand = Plus / Plus


Query: 1037 gccaaaaggcagcaactgttgttgtaccaccaggtccacaacatttcccacctttaaatg 1096
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gccaaaaggcagcaactgttgttgtaccaccaggtccacaacatttcccacctttaaatg 60


Query: 1097 gaagtgaacaacaaacatctgttgttgaaact 1128
            ||||||||||||||||||||||||||||||||
Sbjct: 61   gaagtgaacaacaaacatctgttgttgaaact 92

 Score =  123 bits (62), Expect(4) = 0.0
 Identities = 62/62 (100%)
 Strand = Plus / Plus


Query: 1136 tggaatggggtccagccgataaaaaagcgtattaccagttgaaaccactgtagtttcacc 1195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100  tggaatggggtccagccgataaaaaagcgtattaccagttgaaaccactgtagtttcacc 159


Query: 1196 ac 1197
            ||
Sbjct: 160  ac 161

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,015,520,205
Number of extensions: 59831070
Number of successful extensions: 4663841
Number of sequences better than 10.0: 51
Length of query: 1607
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1583
Effective length of database: 97,308,875,965
Effective search space: 154039950652595
Effective search space used: 154039950652595
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12428-1 (Contig-U12428-1Q) /CSM_Contig/Contig-U12428-1Q.Seq.d
         (1607 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844509_37(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    37   2.1

>AL844509_37(AL844509|pid:none) Plasmodium falciparum 3D7 chromosome
            13.
          Length = 1045

 Score = 37.0 bits (84), Expect = 2.1
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 944  ENHQFLINQNHITINQRNLIIHQTMNIKRNTA-KRQQLLLYHQVHNISH 1087
            +NH F INQ H  +  +    H+++NIK+NT+ +  Q++ + Q  N +H
Sbjct: 359  QNHPFYINQQHNNVYDKIHTNHKSINIKKNTSCEEHQIINHPQKSNTNH 407

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,083,294,673
Number of extensions: 10965446
Number of successful extensions: 26128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26117
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 402
Effective length of database: 620,718,517
Effective search space: 249528843834
Effective search space used: 249528843834
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.61  gvh: 0.31  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.29  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for Contig-U12428-1 is nuc
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 5
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0