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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01941-1
Contig ID Contig-U01941-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01941-1 (Contig-U01941-1Q) /CSM_Contig/Contig-U01941-1Q.Seq.d
ATCGAATCAAAATTCAACAACAACAACAACAACAACAACAACAACACCAA
CAACAGCAGTAACTACAACAACTACGACTACAAATGTTATGGTTAATAAT
ATTGAAAATCAAAATAATAATAATATTGATAATCATAATAATAATTATAA
TCAACAATTTAATAATAATAATGAACAATTAAATGAAATTTTTGAAAATG
TTGAAGTAATAATTGGAGAGAATGAAGGTGATATTATGGAAACTGAAAGT
TTAGATAGTAATAATGGTATAACCTATTCAAATATTGGTGATATTAATGA
TGATGGGGAATTTGA----------TTATTATCACCTTTTACAATAATGA
ATTATTTAATTTCAAAAGATAAATTATTTATGATTGAAAATATTATTATC
AATTTTAAGAGTAAATACTTTTCAAATCCAATCGATAAGAAATTAAATCT
TGTTCATTTATCAATTTTAAATGCATCAACAATTGGTTCATTTAGATTGA
TTGAATCTCTATATCCAGAATATAATAATAAATTTATTATTGGTAGATCA
ATCATTAATCTATTGGTTCAAAAAGATAGAAACAATGATAAACTTATTTA
TCTTCATAGAAAAGGTCATCTATGTAATTTGGATTATTTAAATCATAAAG
TTAAAAGAGTAAATGGTACCCTAACTAAATTGGTTTTTCCTCCAGAAATT
TCAAAAACAATAACTTCAATCATTCAATCTCAATCAATAAAAAAAGAACC
TGATAATTTAGATAAAAAAAAAATTAAAAAAAAGATCAAAATATTGATAA
TCAAAAAAAAATAATAATATATACAAAAATAATTGTAAATAATAAATAAA
AAATAAAAAATAATTTGTATATAAAAAAAATTAAAAA
Gap gap included
Contig length 877
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5346923
End point 5346045
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 4
Link to clone list U01941
List of clone(s) 

est1=SSL405F,1,316
est2=SSF431E,317,856
est3=SSK804F,451,755
est4=SSL405Z,555,879
Translated Amino Acid sequence 
SNQNSTTTTTTTTTTPTTAVTTTTTTTNVMVNNIENQNNNNIDNHNNNYNQQFNNNNEQL
NEIFENVEVIIGENEGDIMETESLDSNNGITYSNIGDINDDGEF---

---LLSPFTIMNYLISKDKLFMIENIIINFKSKYFSNPIDKKLNLVHLSILNASTIGSFR
LIESLYPEYNNKFIIGRSIINLLVQKDRNNDKLIYLHRKGHLCNLDYLNHKVKRVNGTLT
KLVFPPEISKTITSIIQSQSIKKEPDNLDKKKIKKKIKILIIKKK**yiqk*l*iinkk*
kiici*kklk
Translated Amino Acid sequence (All Frames) 
Frame A:
ieskfnnnnnnnnnntnnssnynnydykcyg**y*ksk***y**s***l*sti*****ti
k*nf*kc*snnwre*r*yygn*kfr***wynlfkyw*y***wgi*---

---LLSPFTIMNYLISKDKLFMIENIIINFKSKYFSNPIDKKLNLVHLSILNASTIGSFR
LIESLYPEYNNKFIIGRSIINLLVQKDRNNDKLIYLHRKGHLCNLDYLNHKVKRVNGTLT
KLVFPPEISKTITSIIQSQSIKKEPDNLDKKKIKKKIKILIIKKK**yiqk*l*iinkk*
kiici*kklk

Frame B:
SNQNSTTTTTTTTTTPTTAVTTTTTTTNVMVNNIENQNNNNIDNHNNNYNQQFNNNNEQL
NEIFENVEVIIGENEGDIMETESLDSNNGITYSNIGDINDDGEF---

---yyhllq**ii*fqkinyl*lkillsilrvntfqiqsirn*ilfiyqf*mhqqlvhld
*lnlyiqniiinlllvdqsliywfkkietminlfifiekviyviwii*iiklke*mvp*l
nwfflqkfqkq*lqsfnlnq*kknlii*ikkklkkrsky**skknnniyknnck**iknk
k*fvykkn*k

Frame C:
rikiqqqqqqqqqqhqqqq*lqqlrlqmlwliilkikiiiiliiiiiiiinnliiimnn*
mkflkmlk**lermkvilwklkv*ivimv*piqilvilmmmgnl---

---iitfynnelfnfkr*iiyd*kyyyqf*e*ilfksnr*eikscsfinfkcinnwfi*i
d*isisri***iyyw*inh*sigskr*kq**tylss*krssm*fglfks*s*kskwypn*
igfssrnfknnnfnhsisinkkrt**fr*kkn*kkdqnidnqkkiiiytkiivnnk*kik
nnlyikkik
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01941-1 (Contig-U01941-1Q)
/CSM_Contig/Contig-U01941-1Q.Seq.d
         (887 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01941-1 (Contig-U01941-1Q) /CSM_Contig/Conti...  1047  0.0
Contig-U09356-1 (Contig-U09356-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13865-1 (Contig-U13865-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U01125-1 (Contig-U01125-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U03476-1 (Contig-U03476-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12486-1 (Contig-U12486-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U09342-1 (Contig-U09342-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U05632-1 (Contig-U05632-1Q) /CSM_Contig/Conti...    36  0.062

>Contig-U01941-1 (Contig-U01941-1Q) /CSM_Contig/Contig-U01941-1Q.Seq.d
          Length = 887

 Score = 1047 bits (528), Expect = 0.0
 Identities = 572/579 (98%)
 Strand = Plus / Plus

                                                                       
Query: 185 gaaatttttgaaaatgttgaagtaataattggagagaatgaaggtgatattatggaaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaaatttttgaaaatgttgaagtaataattggagagaatgaaggtgatattatggaaact 244

                                                                       
Query: 245 gaaagtttagatagtaataatggtataacctattcaaatattggtgatattaatgatgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gaaagtttagatagtaataatggtataacctattcaaatattggtgatattaatgatgat 304

                                                                       
Query: 305 ggggaatttgannnnnnnnnnttattatcaccttttacaataatgaattatttaatttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggggaatttgannnnnnnnnnttattatcaccttttacaataatgaattatttaatttca 364

                                                                       
Query: 365 aaagataaattatttatgattgaaaatattattatcaattttaagagtaaatacttttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaagataaattatttatgattgaaaatattattatcaattttaagagtaaatacttttca 424

                                                                       
Query: 425 aatccaatcgataagaaattaaatcttgttcatttatcaattttaaatgcatcaacaatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aatccaatcgataagaaattaaatcttgttcatttatcaattttaaatgcatcaacaatt 484

                                                                       
Query: 485 ggttcatttagattgattgaatctctatatccagaatataataataaatttattattggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggttcatttagattgattgaatctctatatccagaatataataataaatttattattggt 544

                                                                       
Query: 545 agatcaatcattaatctattggttcaaaaagatagaaacaatgataaacttatttatctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agatcaatcattaatctattggttcaaaaagatagaaacaatgataaacttatttatctt 604

                                                                       
Query: 605 catagaaaaggtcatctatgtaatttggattatttaaatcataaagttaaaagagtaaat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 catagaaaaggtcatctatgtaatttggattatttaaatcataaagttaaaagagtaaat 664

                                                                       
Query: 665 ggtaccctaactaaattggtttttcctccagaaatttcaaaaacaataacttcaatcatt 724
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ggtaccctaactaaattggtttttcctccagaaatttcaaaaacaataacttcaatcatt 724

                                                  
Query: 725 caatctcaatcaatnnnnnnngaacctgataatttagat 763
           ||||||||||||||       ||||||||||||||||||
Sbjct: 725 caatctcaatcaataaaaaaagaacctgataatttagat 763


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 73 tacgactacaaatgttatggttaa 96
          ||||||||||||||||||||||||
Sbjct: 73 tacgactacaaatgttatggttaa 96


 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 524 aataataaatttattatt 541
           ||||||||||||||||||
Sbjct: 541 aataataaatttattatt 524


>Contig-U09356-1 (Contig-U09356-1Q) /CSM_Contig/Contig-U09356-1Q.Seq.d
          Length = 513

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 463 aattttaaatgcatcaacaat 483
           |||||||||||||||||||||
Sbjct: 54  aattttaaatgcatcaacaat 34


>Contig-U13865-1 (Contig-U13865-1Q) /CSM_Contig/Contig-U13865-1Q.Seq.d
          Length = 1961

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 277 ttcaaatattggtgatatta 296
           ||||||||||||||||||||
Sbjct: 268 ttcaaatattggtgatatta 287


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,807
Number of Sequences: 6905
Number of extensions: 18807
Number of successful extensions: 2221
Number of sequences better than 10.0: 243
length of query: 887
length of database: 5,674,871
effective HSP length: 16
effective length of query: 871
effective length of database: 5,564,391
effective search space: 4846584561
effective search space used: 4846584561
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.10
Homology vs DNA 
Query= Contig-U01941-1 (Contig-U01941-1Q) /CSM_Contig/Contig-U01941-1Q.Seq.d
         (887 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92998) Dictyostelium discoideum slug cDNA, clone SSF431.        797   0.0    1
(AU074464) Dictyostelium discoideum slug cDNA, clone SSK804.      476   e-130  1
(AU072926) Dictyostelium discoideum slug cDNA, clone SSF431.      476   e-130  1
(AU038727) Dictyostelium discoideum slug cDNA, clone SSL405.      396   e-106  1
(AU074631) Dictyostelium discoideum slug cDNA, clone SSL405.       52   7e-04  2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   0.012  13
(BX936448) Zebrafish DNA sequence from clone DKEY-11J4 in li...    44   0.049  6
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    38   0.062  9
(AC172879) Brassica rapa subsp. pekinensis clone KBrH070I10,...    42   0.15   5
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    38   0.33   10
(EJ518580) 1092955116556 Global-Ocean-Sampling_GS-29-01-01-1...    46   0.47   2
(AC009371) Drosophila melanogaster 3L BAC RP98-44K7 (Roswell...    36   0.50   6
(EK331837) 1095467026629 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.54   2
(EK329405) 1095467017989 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.56   2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   0.57   12
(Z81496) Caenorhabditis elegans Cosmid F09C6.                      48   0.58   1
(DE628742) Bombyx mori genomic DNA, Fosmid clone:GBMFno371_k...    48   0.58   1
(CZ579600) OA_BBa0172C06.f OA_BBa Oryza alta genomic clone O...    48   0.58   1
(CZ128450) OA_BBa0019C18.f OA_BBa Oryza alta genomic clone O...    48   0.58   1
(CL641343) CH213-9P24.SP6 CH213 Gasterosteus aculeatus genom...    48   0.58   1
(AC178577) Strongylocentrotus purpuratus clone R3-3022K10, W...    40   0.67   6
(AC221144) Bos taurus clone CH240-394N1, WORKING DRAFT SEQUE...    42   0.68   5
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      36   0.70   16
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   0.72   14
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   1.1    12
(X04465) Marchantia polymorpha chloroplast genome DNA.             36   1.1    8
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    30   1.2    16
(DQ630521) Stigeoclonium helveticum strain UTEX 441 chloropl...    38   1.2    8
(AC025628) Mus musculus chromosome 11 clone RP23-67H12 map 1...    36   1.2    2
(AL591136) Mouse DNA sequence from clone RP23-273P3 on chrom...    36   1.2    2
(AC181711) Strongylocentrotus purpuratus clone R3-1039L11, W...    36   1.2    2
(AC027158) Homo sapiens chromosome 5 clone RP11-652M6 map 5,...    36   1.2    2
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   1.4    8
(AK137634) Mus musculus adult female vagina cDNA, RIKEN full...    36   1.5    2
(AK162852) Mus musculus adult male hypothalamus cDNA, RIKEN ...    36   1.5    2
(EK285457) 1095462311120 Global-Ocean-Sampling_GS-31-01-01-1...    34   1.6    2
(BB619272) Mus musculus 8 days embryo cDNA, RIKEN full-lengt...    36   1.6    2
(AM461855) Vitis vinifera contig VV78X091505.3, whole genome...    34   1.7    4
(DX029707) KBrB025P23R KBrB, Brassica rapa BamHI BAC library...    42   1.8    2
(ED318552) AUAC-aaw58a01.b1 Ascaris suum whole genome shotgu...    40   1.8    2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   1.9    13
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    30   1.9    13
(V00697) Yeast (S. cerevisiae) mitochondrial genes for sever...    36   1.9    3
(EK345061) 1095467344806 Global-Ocean-Sampling_GS-31-01-01-1...    38   1.9    2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   2.1    13
(AC167696) Reniera sp. JGI-2005 clone JGIBAYC-5E8, complete ...    46   2.3    1
(AZ526044) 251PbA08 Pb MBN #21 Plasmodium berghei genomic 3'...    46   2.3    1
(AZ525951) 250PbA05 Pb MBN #21 Plasmodium berghei genomic 3'...    46   2.3    1
(AZ523582) 221PbC05 Pb MBN #21 Plasmodium berghei genomic 3'...    46   2.3    1
(ER423996) 1092963735345 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.3    1
(EK163034) 1095458039972 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.3    1
(EJ830916) 1093017580774 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.3    1
(EJ829401) 1093017575604 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.3    1
(EJ470812) 1095403409697 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.3    1
(EJ451970) 1093015432600 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.3    1
(DX896385) KBrH026N12F KBrH, Brassica rapa HindIII BAC libra...    46   2.3    1
(EL930686) Centeaurea_plate-001_A22.trimmed.seq Centaurea no...    46   2.3    1
(DV793331) Hw_loin_40_F07 Bos taurus CF-24-HW loin cDNA libr...    46   2.3    1
(BJ402974) Dictyostelium discoideum cDNA clone:dds18k20, 3' ...    46   2.3    1
(BJ399941) Dictyostelium discoideum cDNA clone:dds8j06, 3' e...    46   2.3    1
(AE017308) Mycoplasma mobile 163K complete genome.                 36   2.4    14
(CU651588) M.truncatula DNA sequence from clone MTH2-178K9 o...    38   2.7    6
(EJ569480) 1092960023004 Global-Ocean-Sampling_GS-29-01-01-1...    32   2.7    3
(L36886) Saccharomyces cerevisiae mitochondrion transfer RNA...    36   3.1    3
(AC211072) Solanum lycopersicum chromosome 6 clone C06HBa030...    36   4.4    5
(AW649016) EST327470 tomato germinating seedlings, TAMU Sola...    34   4.5    2
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    40   4.7    9
(AW216626) EST295340 tomato callus, TAMU Solanum lycopersicu...    34   4.8    2
(BI421288) EST531954 tomato callus, TAMU Solanum lycopersicu...    34   4.8    2
(AW035606) EST281344 tomato callus, TAMU Solanum lycopersicu...    34   4.8    2
(BI922358) EST542262 tomato callus Solanum lycopersicum cDNA...    34   4.8    2
(BI421778) EST532444 tomato callus, TAMU Solanum lycopersicu...    34   4.8    2
(AW032463) EST276022 tomato callus, TAMU Solanum lycopersicu...    34   4.8    2
(AW031359) EST274813 tomato callus, TAMU Solanum lycopersicu...    34   4.8    2
(AW650288) EST328742 tomato germinating seedlings, TAMU Sola...    34   4.9    2
(AW030788) EST274043 tomato callus, TAMU Solanum lycopersicu...    34   4.9    2
(BI423053) EST533730 tomato callus, TAMU Solanum lycopersicu...    34   4.9    2
(AC201355) Strongylocentrotus purpuratus clone R3-17B10, WOR...    36   4.9    4
(AW035689) EST281843 tomato callus, TAMU Solanum lycopersicu...    34   5.0    2
(AW221724) EST298535 tomato fruit red ripe, TAMU Solanum lyc...    34   5.0    2
(EU401918) Bombus hypocrita sapporoensis mitochondrion, part...    34   5.0    2
(BI923063) EST542967 tomato callus Solanum lycopersicum cDNA...    34   5.0    2
(BI922891) EST542795 tomato callus Solanum lycopersicum cDNA...    34   5.1    2
(BI422727) EST533393 tomato callus, TAMU Solanum lycopersicu...    34   5.1    2
(AW031625) EST275079 tomato callus, TAMU Solanum lycopersicu...    34   5.1    2
(BI922849) EST542753 tomato callus Solanum lycopersicum cDNA...    34   5.4    2
(BI922460) EST542364 tomato callus Solanum lycopersicum cDNA...    34   5.4    2
(DB680212) Solanum lycopersicum cDNA, clone: LEFL1006CC06, 5...    34   5.4    2
(BI421502) EST532168 tomato callus, TAMU Solanum lycopersicu...    34   5.4    2
(DB704801) Solanum lycopersicum cDNA, clone: LEFL1086CE04, 5...    34   5.4    2
(J01485) Yeast (S.cerevisiae) mitochondrial cytochrome oxi1 ...    34   5.4    2
(AW216351) EST295095 tomato callus, TAMU Solanum lycopersicu...    34   5.5    2
(AW625601) EST319508 tomato radicle, 5 d post-imbibition, Co...    34   5.5    2
(BI422794) EST533460 tomato callus, TAMU Solanum lycopersicu...    34   5.7    2
(BI421689) EST532355 tomato callus, TAMU Solanum lycopersicu...    34   5.7    2
(EL500294) 020_PFLAB1-M-P26B.AB1 Blood stage Plasmodium falc...    36   5.7    2
(EJ061439) 1095456068369 Global-Ocean-Sampling_GS-26-01-01-1...    42   5.8    2
(EL888950) CGF2003170_E06 PV-02 Pratylenchus vulnus cDNA clo...    36   5.9    2
(AC233829) Monodelphis domestica clone VMRC18-539I1, WORKING...    36   5.9    5
(FK735597) av02126o07r1.1 Symbiotic sea anemone (Anemonia vi...    34   5.9    2
(FK724972) av02089m01r1.1 Symbiotic sea anemone (Anemonia vi...    34   5.9    2
(FK733349) av02079i15r1.1 Symbiotic sea anemone (Anemonia vi...    34   6.0    2
(BI422993) EST533659 tomato callus, TAMU Solanum lycopersicu...    34   6.0    2
(BI921265) EST541168 tomato callus Solanum lycopersicum cDNA...    34   6.0    2
(ED658030) GM_WBa0078J06.f GM_WBa Glycine max genomic clone ...    34   6.0    2
(BI923247) EST543151 tomato callus Solanum lycopersicum cDNA...    34   6.1    2
(BI422890) EST533556 tomato callus, TAMU Solanum lycopersicu...    34   6.1    2
(AC223357) Bos taurus clone CH240-421H15, WORKING DRAFT SEQU...    40   6.2    3
(EG554020) to00225 Tomato CL5915 roots under different devel...    34   6.2    2
(BI421948) EST532614 tomato callus, TAMU Solanum lycopersicu...    34   6.2    2
(BI421909) EST532575 tomato callus, TAMU Solanum lycopersicu...    34   6.3    2
(BI423219) EST533885 tomato callus, TAMU Solanum lycopersicu...    34   6.3    2
(FH551127) CHO_OF4501xf19r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   6.3    2
(FB571377) Sequence 244 from Patent EP1865317.                     32   6.3    7
(EJ973847) 1093022101464 Global-Ocean-Sampling_GS-30-02-01-1...    34   6.4    2
(FH551041) CHO_OF4501xf19f1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   6.4    2
(EJ849994) 1093017876157 Global-Ocean-Sampling_GS-30-02-01-1...    42   6.5    2
(AP007310) Lotus japonicus genomic DNA, chromosome 3, clone:...    40   6.5    2
(EK231007) 1095460179274 Global-Ocean-Sampling_GS-31-01-01-1...    40   6.5    2
(EG364392) chan00375 Tomato root of CBF1-5 transgenic plant ...    34   6.7    2
(FJ171325) Polystoechotes punctatus mitochondrion, complete ...    40   7.1    2
(AM435390) Vitis vinifera, whole genome shotgun sequence, co...    40   7.5    2
(CK468683) C5R1-27 Tomato root of CBF1-5 transgenic plant li...    34   7.6    2
(AC232550) Brassica rapa subsp. pekinensis clone KBrH011J16,...    42   8.3    4
(AZ675230) ENTKI49TR Entamoeba histolytica Sheared DNA Entam...    36   8.4    2
(AP004484) Lotus japonicus genomic DNA, chromosome 1, clone:...    38   8.4    3
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    30   8.5    10
(AP007733) Lotus japonicus genomic DNA, chromosome 3, clone:...    38   8.5    2
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ...    34   8.6    7
(EJ270866) 1095353013412 Global-Ocean-Sampling_GS-27-01-01-1...    32   8.7    3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   8.8    18
(AC202356) Medicago truncatula clone mth2-51m9, WORKING DRAF...    34   8.8    5
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   8.9    9
(AM423750) Vitis vinifera contig VV78X155317.10, whole genom...    42   9.0    2
(BX470178) Zebrafish DNA sequence from clone CH211-285K18 in...    44   9.1    1
(AC194553) Pan troglodytes BAC clone CH251-435P13 from chrom...    44   9.1    1
(DQ826297) Gratiola neglecta ndhF-rpL32 intergenic spacer, p...    44   9.1    1
(AM458711) Vitis vinifera contig VV78X211217.5, whole genome...    44   9.1    1
(AM451121) Vitis vinifera contig VV78X126655.5, whole genome...    44   9.1    1
(AM446043) Vitis vinifera, whole genome shotgun sequence, co...    44   9.1    1
(AC168204) Medicago truncatula chromosome 7 clone mth2-64h15...    44   9.1    1
(AC149378) Phakopsora pachyrhizi clone JGIAFNA-5A4, complete...    44   9.1    1
(AC136974) Medicago truncatula clone mth2-22e9, complete seq...    44   9.1    1
(CQ869688) Sequence 109 from Patent WO2004074320.                  44   9.1    1
(AX345969) Sequence 1040 from Patent WO0200928.                    44   9.1    1
(GC698113) Sequence 13358 from patent US 6812339.                  44   9.1    1
(EU016194) Cryptopygus antarcticus mitochondrion, complete g...    44   9.1    1
(DQ019786) Lycosa suzukii 12S ribosomal RNA gene, partial se...    44   9.1    1
(AL035425) Human DNA sequence from clone RP6-24A23 on chromo...    44   9.1    1
(AC152437) Bos taurus clone CH240-5M24, WORKING DRAFT SEQUEN...    44   9.1    1
(AC141736) Apis mellifera clone CH224-58F15, WORKING DRAFT S...    44   9.1    1
(AC097197) Rattus norvegicus clone CH230-197O12, *** SEQUENC...    44   9.1    1
(CU914249) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.1    1
(CU695178) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.1    1
(AC233124) Solanum lycopersicum strain Heinz 1706 clone hba-...    44   9.1    1
(AC232093) Solanum tuberosum chromosome 1 clone RH142J23, **...    44   9.1    1
(AC230773) Bos taurus clone CH240-499N21, WORKING DRAFT SEQU...    44   9.1    1
(AC229608) Mustela putorius furo clone CH237-317L4, WORKING ...    44   9.1    1
(AC187310) Canis lupus familiaris chromosome 25 clone XX-84I...    44   9.1    1
(AC179283) Strongylocentrotus purpuratus clone R3-1105H23, W...    44   9.1    1
(AC167353) Bos taurus clone CH240-185C5, WORKING DRAFT SEQUE...    44   9.1    1
(AC164041) Bos taurus clone CH240-138B16, *** SEQUENCING IN ...    44   9.1    1
(BH454980) BOGPW10TF BOGP Brassica oleracea genomic clone BO...    44   9.1    1
(FH947386) CHO_OF6746xg22f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   9.1    1
(FH366726) CHO_OF4499xg19r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.1    1
(ER453328) 1092963858712 Global-Ocean-Sampling_GS-35-01-01-1...    44   9.1    1
(EK344225) 1095467185090 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.1    1
(EK313601) 1095462405545 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.1    1
(EK304276) 1095462375156 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.1    1
(EK271082) 1095462257782 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.1    1
(EJ880444) 1093018392811 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.1    1
(EJ847843) 1093017864029 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.1    1
(EJ847330) 1093017861149 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.1    1
(EJ782651) 1093017288723 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.1    1
(EJ738115) 1092961214435 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.1    1
(EJ363175) 1092963694998 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.1    1
(EJ196091) 1092344238495 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.1    1
(EJ096123) 1095462062266 Global-Ocean-Sampling_GS-26-01-01-1...    44   9.1    1
(EJ066556) 1095458043856 Global-Ocean-Sampling_GS-26-01-01-1...    44   9.1    1
(EF993541) Uncultured bacterium clone BYUO1618.b1, genomic s...    44   9.1    1
(ED437899) AUAC-aay04c05.b1 Ascaris suum whole genome shotgu...    44   9.1    1
(ED386791) AUAC-aap44a05.b1 Ascaris suum whole genome shotgu...    44   9.1    1
(ED134382) AUAC-aam28h05.g1 Ascaris suum whole genome shotgu...    44   9.1    1
(CU855476) A BAC library has been constructed from PN40024 g...    44   9.1    1
(CC594149) CH240_395H2.T7 CHORI-240 Bos taurus genomic clone...    44   9.1    1
(EB372488) nbb44g03.y1 Guinea pig lens. Unnormalized (nbb) C...    44   9.1    1
(DV779561) HW_Fat_70_050831_H12 Bos taurus CF-24-HW fat cDNA...    44   9.1    1
(DT618186) ACAH-aab07a04.g1 Hydra_EST_UCI-10 Hydra magnipapi...    44   9.1    1
(DC221609) Plasmodium berghei strain ANKA cDNA clone:MZ00453...    44   9.1    1
(DC219715) Plasmodium berghei strain ANKA cDNA clone:MZ00148...    44   9.1    1
(CV467876) SnESTbab25c03.y1 Sarcocystis neurona merozoite UK...    44   9.1    1
(CN777742) tad86f10.x2 Hydra EST Darmstadt I Hydra magnipapi...    44   9.1    1
(CN626455) tae99a04.x1 Hydra EST Darmstadt I Hydra magnipapi...    44   9.1    1
(CN553608) tae26f05.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   9.1    1
(CN553274) tae26f05.x1 Hydra EST Darmstadt I Hydra magnipapi...    44   9.1    1
(CN552400) tae18h11.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   9.1    1
(CN552061) tae18h11.x1 Hydra EST Darmstadt I Hydra magnipapi...    44   9.1    1
(CB271784) taa26a03.x3 Hydra EST -II Hydra magnipapillata cD...    44   9.1    1
(CB012437) Hc_ad_39B07_SKPL Haemonchus contortus adult from ...    44   9.1    1
(FK226001) XABT227794.g1 Gateway compatible cien cDNA librar...    44   9.1    1
(FC768976) CBBN4762.rev CBBN Lottia gigantea 3,4,5,6.5d Larv...    44   9.1    1
(FC764544) CBBN1509.rev CBBN Lottia gigantea 3,4,5,6.5d Larv...    44   9.1    1
(FC762376) CBBN13262.rev CBBN Lottia gigantea 3,4,5,6.5d Lar...    44   9.1    1
(FC619633) CAXT10103.fwd CAXT Lottia gigantea from mantle Lo...    44   9.1    1
(FC619632) CAXT10103.rev CAXT Lottia gigantea from mantle Lo...    44   9.1    1
(FC602112) CAXS13912.fwd CAXS Lottia gigantea from head, foo...    44   9.1    1
(FC586039) CAXP3435.rev CAXP Lottia gigantea from head, foot...    44   9.1    1
(FC583240) CAXP1902.rev CAXP Lottia gigantea from head, foot...    44   9.1    1
(EY364893) CAWZ983.rev CAWZ Helobdella robusta Primary Late ...    44   9.1    1
(EY357474) CAWZ4917.rev CAWZ Helobdella robusta Primary Late...    44   9.1    1
(EY351180) CAWZ17986.rev CAWZ Helobdella robusta Primary Lat...    44   9.1    1
(EY331734) CAWY4377.fwd CAWY Helobdella robusta Subtracted E...    44   9.1    1
(EY331733) CAWY4377.rev CAWY Helobdella robusta Subtracted E...    44   9.1    1
(EY321499) CAWX7934.rev CAWX Helobdella robusta Primary Earl...    44   9.1    1
(EY312042) CAWX23801.fwd CAWX Helobdella robusta Primary Ear...    44   9.1    1
(EY311990) CAWX23771.rev CAWX Helobdella robusta Primary Ear...    44   9.1    1
(EY307494) CAWX20499.rev CAWX Helobdella robusta Primary Ear...    44   9.1    1
(EY304305) CAWX17581.fwd CAWX Helobdella robusta Primary Ear...    44   9.1    1
(EY304304) CAWX17581.rev CAWX Helobdella robusta Primary Ear...    44   9.1    1
(EY293003) CAWX10879.rev CAWX Helobdella robusta Primary Ear...    44   9.1    1
(EW711794) SLE00002167 Stachyamoeba lipophora Homemade, poly...    44   9.1    1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    44   9.1    1
(CP000866) Nitrosopumilus maritimus SCM1, complete genome.         44   9.1    1
(CP000521) Acinetobacter baumannii ATCC 17978, complete genome.    44   9.1    1
(CP000414) Leuconostoc mesenteroides subsp. mesenteroides AT...    44   9.1    1
(AP009484) Macrococcus caseolyticus JCSC5402 DNA, complete g...    44   9.1    1
(AC232041) Solanum tuberosum chromosome 5 clone RH065D17, **...    32   9.4    7
(DQ229107) Chara vulgaris chloroplast, complete genome.            34   9.5    9
(CU570641) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   9.7    5
(AY077834) Sheeppox virus NISKHI, complete genome.                 34   9.8    8
(AY077832) Sheeppox virus 10700-99 strain TU-V02127, complet...    34   9.9    8
(AY077833) Sheeppox virus A, complete genome.                      34   9.9    8

>(C92998) Dictyostelium discoideum slug cDNA, clone SSF431.
          Length = 512

 Score =  797 bits (402), Expect = 0.0
 Identities = 402/402 (100%)
 Strand = Plus / Plus


Query: 362 tcaaaagataaattatttatgattgaaaatattattatcaattttaagagtaaatacttt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcaaaagataaattatttatgattgaaaatattattatcaattttaagagtaaatacttt 60


Query: 422 tcaaatccaatcgataagaaattaaatcttgttcatttatcaattttaaatgcatcaaca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaaatccaatcgataagaaattaaatcttgttcatttatcaattttaaatgcatcaaca 120


Query: 482 attggttcatttagattgattgaatctctatatccagaatataataataaatttattatt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attggttcatttagattgattgaatctctatatccagaatataataataaatttattatt 180


Query: 542 ggtagatcaatcattaatctattggttcaaaaagatagaaacaatgataaacttatttat 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtagatcaatcattaatctattggttcaaaaagatagaaacaatgataaacttatttat 240


Query: 602 cttcatagaaaaggtcatctatgtaatttggattatttaaatcataaagttaaaagagta 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttcatagaaaaggtcatctatgtaatttggattatttaaatcataaagttaaaagagta 300


Query: 662 aatggtaccctaactaaattggtttttcctccagaaatttcaaaaacaataacttcaatc 721
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatggtaccctaactaaattggtttttcctccagaaatttcaaaaacaataacttcaatc 360


Query: 722 attcaatctcaatcaataaaaaaagaacctgataatttagat 763
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attcaatctcaatcaataaaaaaagaacctgataatttagat 402

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 889,486,656
Number of extensions: 59604097
Number of successful extensions: 5308364
Number of sequences better than 10.0: 234
Length of query: 887
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 863
Effective length of database: 99,340,224,878
Effective search space: 85730614069714
Effective search space used: 85730614069714
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01941-1 (Contig-U01941-1Q) /CSM_Contig/Contig-U01941-1Q.Seq.d
         (887 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5UNZ0) RecName: Full=Putative ankyrin repeat protein R734;  &A...    37   0.68
CP000721_1331(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    36   1.5
BX548174_1411(BX548174|pid:none) Prochlorococcus marinus MED4 co...    35   2.6
AM434008_5(AM434008|pid:none) Vitis vinifera contig VV78X123966....    35   2.6
AL844507_40(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    35   2.6
CP000939_3085(CP000939|pid:none) Clostridium botulinum B1 str. O...    35   3.4
CR940347_681(CR940347|pid:none) Theileria annulata strain Ankara...    34   5.8
AL844502_77(AL844502|pid:none) Plasmodium falciparum 3D7 chromos...    34   7.5
CP001185_1781(CP001185|pid:none) Thermosipho africanus TCF52B, c...    34   7.5
(Q9ZKF8) RecName: Full=Phenylalanyl-tRNA synthetase beta chain; ...    34   7.5
AL844505_39(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    34   7.5
AM920437_2585(AM920437|pid:none) Penicillium chrysogenum Wiscons...    33   9.8
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    33   9.8

>(Q5UNZ0) RecName: Full=Putative ankyrin repeat protein R734;
           &AY653733_734(AY653733|pid:none)
          Length = 652

 Score = 37.4 bits (85), Expect = 0.68
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
 Frame = +2

Query: 329 LSPFTIMNYLISKDKLFMIENIIINFKSKYFSNPI---DKKLNLVHLSILNASTIGSFRL 499
           L+P  I NYL+S  K   I N ++ F +  +S+ I   D  +N + L+I+N
Sbjct: 470 LTPIIISNYLLSNRK---ISNTLLKFGTTIYSDGIIDNDSDINNILLNIINNQCEEIKDY 526

Query: 500 IESLYPEYNNKFIIGRSIINLLVQ-----KDRNNDKLIYLHRKGHLC--NLDYLNHKVKR 658
           + +    + NK I+  +II+  +       + N D  +YL +   LC  ++  L H V
Sbjct: 527 VYNKPQLWTNKSIMLATIISENIDLFDFLLELNRDNNLYLEQSFILCANSIKMLKHFVNS 586

Query: 659 VNGTLTKLV 685
           +N  +T  V
Sbjct: 587 INLDITSRV 595

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 585,275,724
Number of extensions: 8584296
Number of successful extensions: 30056
Number of sequences better than 10.0: 13
Number of HSP's gapped: 30033
Number of HSP's successfully gapped: 13
Length of query: 295
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 168
Effective length of database: 640,137,871
Effective search space: 107543162328
Effective search space used: 107543162328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.87  gvh: 0.39  alm: 0.43  top: 0.37  tms: 0.00  mit: 0.51  mip: 0.00
 nuc: 0.15  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: vacuolar

>> prediction for Contig-U01941-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0