Contig-U12425-1
Contig ID Contig-U12425-1
Contig update 2002.12.18
Contig sequence
>Contig-U12425-1 (Contig-U12425-1Q) /CSM_Contig/Contig-U12425-1Q.Seq.d
AAACAGCAAATAATAGTAAATTTCAACCAAAAATTAAAGTAAAGTTGGTT
GTAGAATCAGGTAGTTCCACATATGAAAAATCACTTGAATCAACAAATGA
TCAATTAAAACCATTGATTATAAAATTAAATAATAAAATTAAAAAGTATG
AAGAATCATTAAATAAAAAGAACTTTGTTACACCAAATAAACAAAGTTCA
TCATCAATGAATTTATTACAAAAATCATCAACAGTGAATTTATCATCACC
ATCATTGTCTCAGATTGGATTAACACATCATGCTAGTTTAAAGAATTTAC
AAATTACAACATCACCAGATATTCAACAACCACCATCAGTACCATCAAAT
CCAATTGTATTTGGTATTTCATTAGATACATTAATTGCAAAAGAGAAATC
AATGGAATTAAGAATTCCAACATTTGTATCAAATATTTTAAATACATTAT
TTTTACATTCATTAGGAGTTGAAGGTTTATTTAGGATTAGTGGTAGTCAA
ATGGAAATTCAAAATAGAAGAGGAATTGTAAATTTAGGTGATTATTCAAC
ATCAAGAGATGATAATCCTCATGTTTTAACAGTTTTATTAAAACAATTTT
TACGTGATTTACCTGAACCAATTTGTACAAATGCATTATATGATTTATTT
TTAGCTGCTTCTGATCAAATTAATTTTCAACAATGTAAAGAAAATGGATT
TGAAGTTTTAAAGAAATTAATTAATAGTAATTTACCAGTTAATAATAGAA
ATTTATTACAACATTTAATTCACTTTTTAAGATTTGTAGCAATGAATCAA
ACAGTGAATTTAATGGGACCATCGAATTTGAGTAGAGTATTTGGACCAAA
TTTATTTTGGAAAAAAGAGACAGGTCCATTGGATATTCAAATTTTACAGA
GTACAAGTGAGAAAGTTAATTTCATAACGGAACAAATGATACTCCATTAT
GATACCCTATTT----------TATTTATTCATTAGATGGTATACCATCA
ATTGCACCATCAAATTGTACTTCAGATGATAATAATAGTAATGGTGCTGG
TGGTGGTGAACTTTTAAAACCAATTGGTACAAATTTATTTATGAAAGGTA
TTATAATACTTGCAATGTGTAAAGTAGGTCAAAATAGAATTTGGGGTTGT
TCCTCTGAGAAAACTCTATATGTATGGGATACAAAAACTAAAGAAACTAT
TCATCAATGTGAAATTCAAGAGAAAAGACCAAAAAGAATGGCTTGTATTG
AAATTGATGATACTGAATATATTTGGATTGGTGGTGATGAAGGTTCAATT
CCAAATTTTTAATTCAAAGACATTTAAACTTGAACATAAAATTTTAAACC
AAGGTTGGGATAAAATATTTCATATCGCATCAATTAATAGAGAGATTTGG
ATTGGATTTTGGGATACAACAGTTAGAGTATTCCCTGGTGATCCAAAGAA
TAAAGAGATTTTAATCGATTATAAAGGTTATCATTCAGATGTAGTTTCTT
CAATTATTGAAGTACCAAATTTAAAGGGTGGTGATCCATTCGTTTGGTTT
GGTTCATATGATAAATCAATCTCTATAGTTTCAATTAAAGAAGATACAGC
AAAATCTTGGAATTTTACAAATATTAAAAAGAATTTCACTAGACCAATTA
GACAAGGGTTTTTCATCAA

Gap gap included
Contig length 1659
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4661073
End point 4659414
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 4
Link to clone list U12425
List of clone(s)

est1=VHD290F,1,612
est2=VHO201F,376,962
est3=VHD290Z,963,1656
est4=VHO201Z,1273,1660
Translated Amino Acid sequence
TANNSKFQPKIKVKLVVESGSSTYEKSLESTNDQLKPLIIKLNNKIKKYEESLNKKNFVT
PNKQSSSSMNLLQKSSTVNLSSPSLSQIGLTHHASLKNLQITTSPDIQQPPSVPSNPIVF
GISLDTLIAKEKSMELRIPTFVSNILNTLFLHSLGVEGLFRISGSQMEIQNRRGIVNLGD
YSTSRDDNPHVLTVLLKQFLRDLPEPICTNALYDLFLAASDQINFQQCKENGFEVLKKLI
NSNLPVNNRNLLQHLIHFLRFVAMNQTVNLMGPSNLSRVFGPNLFWKKETGPLDIQILQS
TSEKVNFITEQMILHYDTLF---

---IYSLDGIPSIAPSNCTSDDNNSNGAGGGELLKPIGTNLFMKGIIILAMCKVGQNRIW
GCSSEKTLYVWDTKTKETIHQCEIQEKRPKRMACIEIDDTEYIWIGGDEGSIPNF*fkdi
*t*t*nfkprlg*nisyrin**rdldwilgyns*sipw*ske*rdfnrl*rlsfrcsffn
y*stkfkgw*sirlvwfi**inlysfn*rryskilefyky*kefh*tn*trvfhq


Translated Amino Acid sequence (All Frames)
Frame A:
kqqiivnfnqklk*swl*nqvvphmknhlnqqmin*nh*l*n*iiklksmknh*ikrtll
hqinkvhhq*iyyknhqq*iyhhhhclrld*himlv*riyklqhhqifnnhhqyhqiqly
lvfh*ih*lqkrnqwn*efqhlyqif*ihyfyih*elkvylglvvvkwkfkieeel*i*v
iiqhqemiilmf*qfy*nnfyviylnqfvqmhymiyf*llliklifnnvkkmdlkf*rn*
liviyqliieiyyni*ftf*dl*q*ikq*i*wdhri*veyldqiyfgkkrqvhwifkfyr
vqvrklis*rnk*ysimipy---

---ylfirwytinctiklyfr*****wcwww*tfktnwykfiyeryyntcnv*srsk*nl
glfl*ensicmgykn*rnyssm*nsrektkkngly*n**y*iyldww**rfnskfliqrh
lnlnikf*tkvgikyfishqlierfgldfgiqqleyslviqrikrf*siikviiqm*flq
llkyqi*rvvihsfglvhminqsl*fqlkkiqqnlgilqilkrisldqldkgfss

Frame B:
nsk***istkn*skvgcrir*fhi*kit*ink*siktidykik**n*kv*riik*kelcy
tk*tkfiinefitkiinsefiitiivsdwintsc*fkeftnynitrystttistiksnci
wyfiryinckreingiknsnicikyfkyiiftfirs*rfi*d*w*sngnsk*krnckfr*
lfnikr**sscfnsfiktift*ft*tnlykcii*fifscf*sn*fstm*rkwi*sfkein
***fts***kfittfnslfkicsnesnsefngtiefe*siwtkfilekrdrsigysnfte
yk*es*fhngtndtpl*ypi---

---IYSLDGIPSIAPSNCTSDDNNSNGAGGGELLKPIGTNLFMKGIIILAMCKVGQNRIW
GCSSEKTLYVWDTKTKETIHQCEIQEKRPKRMACIEIDDTEYIWIGGDEGSIPNF*fkdi
*t*t*nfkprlg*nisyrin**rdldwilgyns*sipw*ske*rdfnrl*rlsfrcsffn
y*stkfkgw*sirlvwfi**inlysfn*rryskilefyky*kefh*tn*trvfhq

Frame C:
TANNSKFQPKIKVKLVVESGSSTYEKSLESTNDQLKPLIIKLNNKIKKYEESLNKKNFVT
PNKQSSSSMNLLQKSSTVNLSSPSLSQIGLTHHASLKNLQITTSPDIQQPPSVPSNPIVF
GISLDTLIAKEKSMELRIPTFVSNILNTLFLHSLGVEGLFRISGSQMEIQNRRGIVNLGD
YSTSRDDNPHVLTVLLKQFLRDLPEPICTNALYDLFLAASDQINFQQCKENGFEVLKKLI
NSNLPVNNRNLLQHLIHFLRFVAMNQTVNLMGPSNLSRVFGPNLFWKKETGPLDIQILQS
TSEKVNFITEQMILHYDTLF---

---fih*mvyhqlhhqivlqmiiivmvlvvvnf*nqlvqiyl*kvl*ylqcvk*vkiefg
vvplrklymygiqklkklfinvkfkrkdqkewlvlklmilnifglvvmkvqfqifnsktf
klehkilnqgwdkifhiasinreiwigfwdttvrvfpgdpknkeilidykgyhsdvvssi
ievpnlkggdpfvwfgsydksisivsikedtakswnftnikknftrpirqgffi

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12425-1 (Contig-U12425-1Q)
/CSM_Contig/Contig-U12425-1Q.Seq.d
(1669 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12425-1 (Contig-U12425-1Q) /CSM_Contig/Conti... 2962 0.0
Contig-U11251-1 (Contig-U11251-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U09034-1 (Contig-U09034-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13487-1 (Contig-U13487-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U11587-1 (Contig-U11587-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U11213-1 (Contig-U11213-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U09595-1 (Contig-U09595-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U09506-1 (Contig-U09506-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U14907-1 (Contig-U14907-1Q) /CSM_Contig/Conti... 36 0.12

>Contig-U12425-1 (Contig-U12425-1Q) /CSM_Contig/Contig-U12425-1Q.Seq.d
Length = 1669

Score = 2962 bits (1494), Expect = 0.0
Identities = 1524/1524 (100%)
Strand = Plus / Plus


Query: 146 gtatgaagaatcattaaataaaaagaactttgttacaccaaataaacaaagttcatcatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gtatgaagaatcattaaataaaaagaactttgttacaccaaataaacaaagttcatcatc 205


Query: 206 aatgaatttattacaaaaatcatcaacagtgaatttatcatcaccatcattgtctcagat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatgaatttattacaaaaatcatcaacagtgaatttatcatcaccatcattgtctcagat 265


Query: 266 tggattaacacatcatgctagtttaaagaatttacaaattacaacatcaccagatattca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tggattaacacatcatgctagtttaaagaatttacaaattacaacatcaccagatattca 325


Query: 326 acaaccaccatcagtaccatcaaatccaattgtatttggtatttcattagatacattaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acaaccaccatcagtaccatcaaatccaattgtatttggtatttcattagatacattaat 385


Query: 386 tgcaaaagagaaatcaatggaattaagaattccaacatttgtatcaaatattttaaatac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgcaaaagagaaatcaatggaattaagaattccaacatttgtatcaaatattttaaatac 445


Query: 446 attatttttacattcattaggagttgaaggtttatttaggattagtggtagtcaaatgga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attatttttacattcattaggagttgaaggtttatttaggattagtggtagtcaaatgga 505


Query: 506 aattcaaaatagaagaggaattgtaaatttaggtgattattcaacatcaagagatgataa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aattcaaaatagaagaggaattgtaaatttaggtgattattcaacatcaagagatgataa 565


Query: 566 tcctcatgttttaacagttttattaaaacaatttttacgtgatttacctgaaccaatttg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcctcatgttttaacagttttattaaaacaatttttacgtgatttacctgaaccaatttg 625


Query: 626 tacaaatgcattatatgatttatttttagctgcttctgatcaaattaattttcaacaatg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tacaaatgcattatatgatttatttttagctgcttctgatcaaattaattttcaacaatg 685


Query: 686 taaagaaaatggatttgaagttttaaagaaattaattaatagtaatttaccagttaataa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taaagaaaatggatttgaagttttaaagaaattaattaatagtaatttaccagttaataa 745


Query: 746 tagaaatttattacaacatttaattcactttttaagatttgtagcaatgaatcaaacagt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tagaaatttattacaacatttaattcactttttaagatttgtagcaatgaatcaaacagt 805


Query: 806 gaatttaatgggaccatcgaatttgagtagagtatttggaccaaatttattttggaaaaa 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gaatttaatgggaccatcgaatttgagtagagtatttggaccaaatttattttggaaaaa 865


Query: 866 agagacaggtccattggatattcaaattttacagagtacaagtgagaaagttaatttcat 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 agagacaggtccattggatattcaaattttacagagtacaagtgagaaagttaatttcat 925


Query: 926 aacggaacaaatgatactccattatgataccctatttnnnnnnnnnntatttattcatta 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 aacggaacaaatgatactccattatgataccctatttnnnnnnnnnntatttattcatta 985


Query: 986 gatggtataccatcaattgcaccatcaaattgtacttcagatgataataatagtaatggt 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 gatggtataccatcaattgcaccatcaaattgtacttcagatgataataatagtaatggt 1045


Query: 1046 gctggtggtggtgaacttttaaaaccaattggtacaaatttatttatgaaaggtattata 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 gctggtggtggtgaacttttaaaaccaattggtacaaatttatttatgaaaggtattata 1105


Query: 1106 atacttgcaatgtgtaaagtaggtcaaaatagaatttggggttgttcctctgagaaaact 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 atacttgcaatgtgtaaagtaggtcaaaatagaatttggggttgttcctctgagaaaact 1165


Query: 1166 ctatatgtatgggatacaaaaactaaagaaactattcatcaatgtgaaattcaagagaaa 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 ctatatgtatgggatacaaaaactaaagaaactattcatcaatgtgaaattcaagagaaa 1225


Query: 1226 agaccaaaaagaatggcttgtattgaaattgatgatactgaatatatttggattggtggt 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 agaccaaaaagaatggcttgtattgaaattgatgatactgaatatatttggattggtggt 1285


Query: 1286 gatgaaggttcaattccaaatttttaattcaaagacatttaaacttgaacataaaatttt 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 gatgaaggttcaattccaaatttttaattcaaagacatttaaacttgaacataaaatttt 1345


Query: 1346 aaaccaaggttgggataaaatatttcatatcgcatcaattaatagagagatttggattgg 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 aaaccaaggttgggataaaatatttcatatcgcatcaattaatagagagatttggattgg 1405


Query: 1406 attttgggatacaacagttagagtattccctggtgatccaaagaataaagagattttaat 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 attttgggatacaacagttagagtattccctggtgatccaaagaataaagagattttaat 1465


Query: 1466 cgattataaaggttatcattcagatgtagtttcttcaattattgaagtaccaaatttaaa 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 cgattataaaggttatcattcagatgtagtttcttcaattattgaagtaccaaatttaaa 1525


Query: 1526 gggtggtgatccattcgtttggtttggttcatatgataaatcaatctctatagtttcaat 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1526 gggtggtgatccattcgtttggtttggttcatatgataaatcaatctctatagtttcaat 1585


Query: 1586 taaagaagatacagcaaaatcttggaattttacaaatattaaaaagaatttcactagacc 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 taaagaagatacagcaaaatcttggaattttacaaatattaaaaagaatttcactagacc 1645


Query: 1646 aattagacaagggtttttcatcaa 1669
||||||||||||||||||||||||
Sbjct: 1646 aattagacaagggtttttcatcaa 1669


Score = 202 bits (102), Expect = 9e-52
Identities = 102/102 (100%)
Strand = Plus / Plus


Query: 1 aaacagcaaataatagtaaatttcaaccaaaaattaaagtaaagttggttgtagaatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacagcaaataatagtaaatttcaaccaaaaattaaagtaaagttggttgtagaatcag 60


Query: 61 gtagttccacatatgaaaaatcacttgaatcaacaaatgatc 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtagttccacatatgaaaaatcacttgaatcaacaaatgatc 102


>Contig-U11251-1 (Contig-U11251-1Q) /CSM_Contig/Contig-U11251-1Q.Seq.d
Length = 2643

Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 201 tcatcaatgaatttattacaaaaatca 227
||||||||||||||||||||| |||||
Sbjct: 1336 tcatcaatgaatttattacaacaatca 1362


Score = 34.2 bits (17), Expect = 0.47
Identities = 26/29 (89%)
Strand = Plus / Plus


Query: 1030 taataatagtaatggtgctggtggtggtg 1058
|||||||| |||| ||| |||||||||||
Sbjct: 337 taataataataatagtggtggtggtggtg 365


>Contig-U09034-1 (Contig-U09034-1Q) /CSM_Contig/Contig-U09034-1Q.Seq.d
Length = 1304

Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 198 tcatcatcaatgaatttatta 218
|||||||||||||||||||||
Sbjct: 106 tcatcatcaatgaatttatta 126


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,353
Number of Sequences: 6905
Number of extensions: 36353
Number of successful extensions: 4536
Number of sequences better than 10.0: 511
length of query: 1669
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1653
effective length of database: 5,564,391
effective search space: 9197938323
effective search space used: 9197938323
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12425-1 (Contig-U12425-1Q) /CSM_Contig/Contig-U12425-1Q.Seq.d
(1669 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ426436) Dictyostelium discoideum cDNA clone:ddv59a02, 5' ... 1112 0.0 2
(BJ419961) Dictyostelium discoideum cDNA clone:ddv37c24, 5' ... 878 0.0 2
(BJ438387) Dictyostelium discoideum cDNA clone:ddv37c24, 3' ... 708 0.0 2
(BJ445271) Dictyostelium discoideum cDNA clone:ddv59a02, 3' ... 767 0.0 1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 1e-04 17
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 4e-04 25
(AC192444) Pan troglodytes BAC clone CH251-416K23 from chrom... 46 0.002 9
(CT737256) RP43-049D20, complete sequence. 46 0.003 8
(BV420091) S229P6252RD12.T0 GermanShepherd Canis familiaris ... 56 0.004 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.010 19
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 34 0.017 24
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.020 12
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862... 40 0.030 6
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.034 22
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 0.035 17
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 46 0.039 7
(AC181564) Strongylocentrotus purpuratus clone R3-7P1, WORKI... 42 0.042 4
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 42 0.046 20
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.057 17
(CU694682) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.069 1
(ER286582) 1092343573488 Global-Ocean-Sampling_GS-34-01-01-1... 52 0.069 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 0.077 14
(AM443189) Vitis vinifera contig VV78X085493.4, whole genome... 50 0.078 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.085 13
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 30 0.096 22
(CR533571) Zebrafish DNA sequence from clone CH211-209O12 in... 38 0.15 12
(AM483692) Vitis vinifera, whole genome shotgun sequence, co... 38 0.16 6
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 0.17 12
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 0.19 13
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.21 15
(AL935125) Zebrafish DNA sequence from clone CH211-168K15. 34 0.23 7
(AX345879) Sequence 950 from Patent WO0200928. 38 0.25 5
(AL031744) Plasmodium falciparum DNA from MAL1P1. 50 0.26 4
(CU241298) Equus caballus GSS, BAC clone CH241-386O4, T7 end... 44 0.27 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 50 0.27 1
(AQ535370) RPCI-11-317N2.TV RPCI-11 Homo sapiens genomic clo... 50 0.27 1
(CP000361) Arcobacter butzleri RM4018, complete genome. 34 0.33 19
(EI869300) CAH1-32C2TV CAA1Ba Cicer arietinum genomic clone ... 48 0.34 2
(AZ529790) ENTCO91TF Entamoeba histolytica Sheared DNA Entam... 38 0.34 3
(CT976573) Equus caballus GSS, BAC clone CH241-60C16, SP6 en... 44 0.35 2
(AM685024) Entamoeba terrapinae GSS, clone terra020c01.q1k. 38 0.37 3
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 32 0.37 6
(AZ528152) ENTBZ37TF Entamoeba histolytica Sheared DNA Entam... 38 0.40 3
(CR555301) Zebrafish DNA sequence from clone CH211-129A13 in... 32 0.42 11
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 32 0.43 11
(Z98547) Plasmodium falciparum MAL3P3. 36 0.46 12
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 0.47 12
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 36 0.47 15
(AL590065) Human DNA sequence from clone RP11-307A17 on chro... 46 0.48 7
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 44 0.49 22
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 0.53 19
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 0.53 16
(BV286425) S232P6339FF6.T0 Beagle Canis familiaris STS genom... 46 0.57 2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 36 0.57 11
(CU633688) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.59 2
(CU915583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.69 9
(DQ364963) Atrichopogon oedemerarum isolate 48-1 16S ribosom... 34 0.80 2
(AA121865) zn96c11.s1 Stratagene fetal retina 937202 Homo sa... 40 0.82 2
(BH712246) BOMHS05TR BO_2_3_KB Brassica oleracea genomic clo... 38 0.83 3
(AC225543) Medicago truncatula clone mth2-72c14, WORKING DRA... 38 0.92 10
(EK581665) 1095521702582 Global-Ocean-Sampling_GS-32-01-01-1... 42 0.95 3
(CU002161) Equus caballus GSS, BAC clone CH241-63A6, SP6 end... 44 0.99 2
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 34 1.0 13
(AF257137) Mus musculus nicotinamide nucleotide transhydroge... 48 1.1 1
(AC163689) Mus musculus BAC clone CH36-200G6 from chromosome... 48 1.1 1
(AC154550) Mus musculus BAC clone RP23-444H18 from chromosom... 48 1.1 1
(FH157346) CHO_OF3130xl23f1.ab1 CHO_OF3 Nicotiana tabacum ge... 48 1.1 1
(ET965072) CHO_OF420xp09r1.ab1 CHO_OF Nicotiana tabacum geno... 48 1.1 1
(DE117048) Oryzias latipes DNA, forward end of BAC clone: Md... 48 1.1 1
(DE116432) Oryzias latipes DNA, forward end of BAC clone: Md... 48 1.1 1
(AU171744) Oryzias latipes cDNA, clone:br8053. 48 1.1 1
(BJ666712) Eptatretus burgeri leukocyte cDNA clone:hg135b11,... 48 1.1 1
(BJ664607) Eptatretus burgeri leukocyte cDNA clone:hg127m19,... 48 1.1 1
(BJ661955) Eptatretus burgeri leukocyte cDNA clone:hg118p13,... 48 1.1 1
(BJ660117) Eptatretus burgeri leukocyte cDNA clone:hg113a12,... 48 1.1 1
(BJ658731) Eptatretus burgeri leukocyte cDNA clone:hg108j11,... 48 1.1 1
(EX604011) 255343760 Pea aphid whole body normalized full le... 48 1.1 1
(AL844506) Plasmodium falciparum chromosome 7. 36 1.1 18
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 36 1.2 14
(BH135369) ENTON06TR Entamoeba histolytica Sheared DNA Entam... 36 1.3 3
(AZ137410) SP_0176_B2_B07_T7A Strongylocentrotus purpuratus,... 46 1.4 2
(AC181971) Medicago truncatula clone mth2-13b13, WORKING DRA... 38 1.4 8
(CZ949182) 261826 Tomato EcoRI BAC Library Solanum lycopersi... 42 1.8 3
(AC108477) Homo sapiens BAC clone RP11-499F19 from 4, comple... 36 2.2 2
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 2.2 15
(AF303741) Chilo iridescent virus complete genome. 34 2.3 12
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 32 2.4 15
(EA713399) Sequence 92278 from patent US 7365185. 36 2.4 4
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 2.6 13
(CR848841) Zebrafish DNA sequence from clone DKEY-202I12 in ... 34 2.8 9
(CE353307) tigr-gss-dog-17000361446369 Dog Library Canis lup... 34 2.9 2
(DW264598) UI-S-GN1-abp-m-15-0-UI.s1 UI-S-GN1 Euprymna scolo... 36 2.9 2
(AC004688) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 3.0 12
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet... 32 3.1 24
(CU796501) A BAC library has been constructed from PN40024 g... 34 3.1 3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 3.3 18
(AC157376) Medicago truncatula chromosome 7 BAC clone mth2-7... 38 3.4 7
(AC216419) Populus trichocarpa clone POP072-N07, complete se... 34 3.5 7
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 34 3.5 9
(AC187685) Callicebus moloch clone LB5-223C23, WORKING DRAFT... 44 3.6 6

>(BJ426436) Dictyostelium discoideum cDNA clone:ddv59a02, 5' end,
single read.
Length = 586

Score = 1112 bits (561), Expect(2) = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus


Query: 402 atggaattaagaattccaacatttgtatcaaatattttaaatacattatttttacattca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 atggaattaagaattccaacatttgtatcaaatattttaaatacattatttttacattca 85


Query: 462 ttaggagttgaaggtttatttaggattagtggtagtcaaatggaaattcaaaatagaaga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ttaggagttgaaggtttatttaggattagtggtagtcaaatggaaattcaaaatagaaga 145


Query: 522 ggaattgtaaatttaggtgattattcaacatcaagagatgataatcctcatgttttaaca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggaattgtaaatttaggtgattattcaacatcaagagatgataatcctcatgttttaaca 205


Query: 582 gttttattaaaacaatttttacgtgatttacctgaaccaatttgtacaaatgcattatat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gttttattaaaacaatttttacgtgatttacctgaaccaatttgtacaaatgcattatat 265


Query: 642 gatttatttttagctgcttctgatcaaattaattttcaacaatgtaaagaaaatggattt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gatttatttttagctgcttctgatcaaattaattttcaacaatgtaaagaaaatggattt 325


Query: 702 gaagttttaaagaaattaattaatagtaatttaccagttaataatagaaatttattacaa 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaagttttaaagaaattaattaatagtaatttaccagttaataatagaaatttattacaa 385


Query: 762 catttaattcactttttaagatttgtagcaatgaatcaaacagtgaatttaatgggacca 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catttaattcactttttaagatttgtagcaatgaatcaaacagtgaatttaatgggacca 445


Query: 822 tcgaatttgagtagagtatttggaccaaatttattttggaaaaaagagacaggtccattg 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcgaatttgagtagagtatttggaccaaatttattttggaaaaaagagacaggtccattg 505


Query: 882 gatattcaaattttacagagtacaagtgagaaagttaatttcataacggaacaaatgata 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gatattcaaattttacagagtacaagtgagaaagttaatttcataacggaacaaatgata 565


Query: 942 ctccattatgataccctattt 962
|||||||||||||||||||||
Sbjct: 566 ctccattatgataccctattt 586

Score = 48.1 bits (24), Expect(2) = 0.0
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 376 atacattaattgcaaaagagaaat 399
||||||||||||||||||||||||
Sbjct: 1 atacattaattgcaaaagagaaat 24

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,296,669,455
Number of extensions: 149775203
Number of successful extensions: 13339571
Number of sequences better than 10.0: 215
Length of query: 1669
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1645
Effective length of database: 97,308,875,965
Effective search space: 160073100962425
Effective search space used: 160073100962425
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12425-1 (Contig-U12425-1Q) /CSM_Contig/Contig-U12425-1Q.Seq.d
(1669 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC108400_1(BC108400|pid:none) Mus musculus Rho GTPase activating... 94 1e-17
AK037710_1(AK037710|pid:none) Mus musculus 16 days neonate thymu... 94 1e-17
AK137444_1(AK137444|pid:none) Mus musculus adult male bone cDNA,... 94 1e-17
AK172878_1(AK172878|pid:none) Mus musculus mRNA for mKIAA0053 pr... 94 1e-17
AK169897_1(AK169897|pid:none) Mus musculus NOD-derived CD11c +ve... 94 1e-17
T26092(T26092) hypothetical protein W02B12.8 - Caenorhabditis el... 94 2e-17
BC105510_1(BC105510|pid:none) Bos taurus Rho GTPase activating p... 93 3e-17
BC072159_1(BC072159|pid:none) Xenopus laevis hypothetical protei... 91 1e-16
BC076733_1(BC076733|pid:none) Xenopus laevis Rho GTPase activati... 91 2e-16
AK290396_1(AK290396|pid:none) Homo sapiens cDNA FLJ78435 complet... 90 3e-16
D29642_1(D29642|pid:none) Homo sapiens KIAA0053 mRNA, partial cds. 90 3e-16
AK297056_1(AK297056|pid:none) Homo sapiens cDNA FLJ51694 complet... 90 3e-16
AB383728_1(AB383728|pid:none) Synthetic construct DNA, clone: pF... 90 3e-16
AC097495_2(AC097495|pid:none) Homo sapiens BAC clone RP11-304A15... 90 3e-16
AK298669_1(AK298669|pid:none) Homo sapiens cDNA FLJ61332 complet... 90 3e-16
CR457482_4(CR457482|pid:none) Zebrafish DNA sequence from clone ... 89 4e-16
BX936460_1(BX936460|pid:none) Zebrafish DNA sequence from clone ... 89 6e-16
AL592169_1(AL592169|pid:none) Mouse DNA sequence from clone RP23... 89 6e-16
BC004598_1(BC004598|pid:none) Mus musculus SH3-domain binding pr... 89 6e-16
AL592169_2(AL592169|pid:none) Mouse DNA sequence from clone RP23... 89 6e-16
AL592169_3(AL592169|pid:none) Mouse DNA sequence from clone RP23... 89 6e-16
AK039617_1(AK039617|pid:none) Mus musculus adult male spinal cor... 88 8e-16
BC085797_1(BC085797|pid:none) Rattus norvegicus Rho GTPase activ... 88 8e-16
BC081352_1(BC081352|pid:none) Xenopus tropicalis Rho GTPase acti... 88 8e-16
(Q5U2Z7) RecName: Full=Rho GTPase-activating protein 24; AltName... 88 8e-16
(Q9Y3L3) RecName: Full=SH3 domain-binding protein 1; Sh... 88 1e-15
BC098580_1(BC098580|pid:none) Homo sapiens Rho GTPase activating... 88 1e-15
(Q8N264) RecName: Full=Rho GTPase-activating protein 24; AltName... 88 1e-15
AK098193_1(AK098193|pid:none) Homo sapiens cDNA FLJ40874 fis, cl... 88 1e-15
AK126873_1(AK126873|pid:none) Homo sapiens cDNA FLJ44925 fis, cl... 88 1e-15
AK091196_1(AK091196|pid:none) Homo sapiens cDNA FLJ33877 fis, cl... 88 1e-15
BC008282_1(BC008282|pid:none) Homo sapiens SH3-domain binding pr... 88 1e-15
AX961970_1(AX961970|pid:none) Sequence 181 from Patent WO03104277. 88 1e-15
BC048280_1(BC048280|pid:none) Homo sapiens Rho GTPase activating... 87 1e-15
BC044312_1(BC044312|pid:none) Xenopus laevis hypothetical protei... 87 2e-15
AJ720581_1(AJ720581|pid:none) Gallus gallus mRNA for hypothetica... 87 2e-15
BC151437_1(BC151437|pid:none) Bos taurus Rho GTPase activating p... 87 2e-15
BT026166_1(BT026166|pid:none) Bos taurus Rho GTPase activating p... 87 2e-15
(Q9VTU3) RecName: Full=Rho GTPase-activating protein 68F; &AE01... 86 3e-15
AL355192_1(AL355192|pid:none) Novel human gene mapping to chomos... 86 4e-15
AF195968_1(AF195968|pid:none) Homo sapiens rho GTPase activating... 86 4e-15
(Q17R89) RecName: Full=Rho GTPase-activating protein RICH2; AltN... 86 4e-15
BC010490_1(BC010490|pid:none) Homo sapiens Rho GTPase activating... 86 4e-15
AK294538_1(AK294538|pid:none) Homo sapiens cDNA FLJ58097 complet... 86 4e-15
BC079089_1(BC079089|pid:none) Rattus norvegicus Rho GTPase activ... 86 5e-15
(Q5ZMM3) RecName: Full=Rho GTPase-activating protein 15; AltName... 84 1e-14
AB385228_1(AB385228|pid:none) Synthetic construct DNA, clone: pF... 84 2e-14
FN357397_8(FN357397|pid:none) Schistosoma mansoni genome sequenc... 83 3e-14
AY364241_1(AY364241|pid:none) Homo sapiens clone peg2155 SH3 dom... 83 3e-14
(Q8IXX1) RecName: Full=Rho GTPase-activating protein 15; AltName... 83 3e-14
AB060553_1(AB060553|pid:none) Mus musculus mRNA for Nadrin1, com... 83 3e-14
AB042827_1(AB042827|pid:none) Rattus norvegicus mRNA for Nadrin,... 83 3e-14
AB290183_1(AB290183|pid:none) Homo sapiens mRNA for MYO9A varian... 83 3e-14
(Q9NUY2) RecName: Full=Myosin-IXa; AltName: Full=Unconventional ... 83 3e-14
BC003259_1(BC003259|pid:none) Mus musculus Rho GTPase activating... 83 3e-14
AK029836_1(AK029836|pid:none) Mus musculus adult male testis cDN... 83 3e-14
(Q99N37) RecName: Full=Rho GTPase-activating protein 17; AltName... 83 3e-14
AB080637_1(AB080637|pid:none) Rattus norvegicus mRNA for Nadrin-... 83 3e-14
AF117888_1(AF117888|pid:none) Homo sapiens myosin-IXa mRNA, comp... 83 3e-14
AB060554_1(AB060554|pid:none) Mus musculus mRNA for Nadrin2, com... 83 3e-14
AK001923_1(AK001923|pid:none) Homo sapiens cDNA FLJ11061 fis, cl... 83 3e-14
AK055037_1(AK055037|pid:none) Homo sapiens cDNA FLJ30475 fis, cl... 82 6e-14
AY219338_1(AY219338|pid:none) Homo sapiens ARHGAP15 mRNA, comple... 81 1e-13
AK124370_1(AK124370|pid:none) Homo sapiens cDNA FLJ42379 fis, cl... 81 1e-13
(Q6AYC5) RecName: Full=Rho GTPase-activating protein 15; AltName... 81 1e-13
BC066588_1(BC066588|pid:none) Danio rerio zgc:77004, mRNA (cDNA ... 81 1e-13
(Q9Z1N3) RecName: Full=Myosin-IXa; AltName: Full=Unconventional ... 81 1e-13
AL691489_9(AL691489|pid:none) Mouse DNA sequence from clone RP23... 80 2e-13
AK079048_1(AK079048|pid:none) Mus musculus adult male diencephal... 80 2e-13
BC016701_1(BC016701|pid:none) Homo sapiens Rho GTPase activating... 80 2e-13
(Q5FWK3) RecName: Full=Rho GTPase-activating protein 1; AltName:... 80 2e-13
AK084622_1(AK084622|pid:none) Mus musculus 13 days embryo heart ... 80 2e-13
AK046291_1(AK046291|pid:none) Mus musculus adult male corpora qu... 80 2e-13
AY891643_1(AY891643|pid:none) Synthetic construct Homo sapiens c... 80 2e-13
BC149489_1(BC149489|pid:none) Bos taurus Rho GTPase activating p... 80 2e-13
(Q07960) RecName: Full=Rho GTPase-activating protein 1; AltName:... 80 2e-13
AJ306731_1(AJ306731|pid:none) Homo sapiens mRNA for RhoGAP prote... 80 3e-13
AB385211_1(AB385211|pid:none) Synthetic construct DNA, clone: pF... 80 3e-13
BC115362_1(BC115362|pid:none) Homo sapiens Rho GTPase activating... 80 3e-13
AL137485_1(AL137485|pid:none) Homo sapiens mRNA; cDNA DKFZp434L0... 80 3e-13
BC051811_1(BC051811|pid:none) Homo sapiens Rho GTPase activating... 80 3e-13
(Q8IWW6) RecName: Full=Rho GTPase-activating protein 12; AltName... 80 3e-13
BX470224_4(BX470224|pid:none) Zebrafish DNA sequence from clone ... 80 3e-13
(Q9BVF6) RecName: Full=Rho GTPase-activating protein 17; AltName... 80 3e-13
T27958(T27958;T27973)hypothetical protein ZK669.1a - Caenorhabdi... 80 3e-13
T27959(T27959;T27974)hypothetical protein ZK669.1b - Caenorhabdi... 80 3e-13
(P35688) RecName: Full=Rho-GTPase-activating protein LRG1; AltNa... 79 4e-13
AK046097_1(AK046097|pid:none) Mus musculus adult male corpora qu... 79 4e-13
(Q8BL80) RecName: Full=Rho GTPase-activating protein 22; AltName... 79 4e-13
(Q8C0D4) RecName: Full=Rho GTPase-activating protein 12; AltName... 79 5e-13
AK077063_1(AK077063|pid:none) Mus musculus adult male testis cDN... 79 5e-13
BC024633_1(BC024633|pid:none) Mus musculus Rho GTPase activating... 79 5e-13
AK031648_1(AK031648|pid:none) Mus musculus 13 days embryo male t... 79 5e-13
AF143683_1(AF143683|pid:none) Mus musculus C57Bl/6 8 unconventio... 79 5e-13
BC141184_1(BC141184|pid:none) Mus musculus Rho GTPase activating... 79 5e-13
AJ888904_1(AJ888904|pid:none) Rattus norvegicus mRNA for myosin ... 79 6e-13
(Q8N103) RecName: Full=T-cell activation Rho GTPase-activating p... 79 6e-13
(Q7Z5H3) RecName: Full=Rho GTPase-activating protein 22; AltName... 79 6e-13
AJ888905_1(AJ888905|pid:none) Rattus norvegicus mRNA for myosin ... 79 6e-13
(Q13459) RecName: Full=Myosin-IXb; AltName: Full=Unconventional ... 79 6e-13
AK298686_1(AK298686|pid:none) Homo sapiens cDNA FLJ59734 complet... 79 6e-13
(Q63358) RecName: Full=Myosin-IXb; AltName: Full=Unconventional ... 79 6e-13
AK293579_1(AK293579|pid:none) Homo sapiens cDNA FLJ56006 complet... 79 6e-13
AK127586_1(AK127586|pid:none) Homo sapiens cDNA FLJ45681 fis, cl... 79 6e-13
A59256(A59256;I61700) myosin-IXb [similarity] - human &U42391_1... 79 6e-13
AB290184_1(AB290184|pid:none) Homo sapiens mRNA for MYO9B varian... 78 8e-13
(Q8BRH3) RecName: Full=Rho GTPase-activating protein 19; AltName... 78 8e-13
BC018108_1(BC018108|pid:none) Homo sapiens myosin IXB, mRNA (cDN... 78 8e-13
(Q6PGG2) RecName: Full=GEM-interacting protein; Short=G... 78 8e-13
AK016763_1(AK016763|pid:none) Mus musculus adult male testis cDN... 78 8e-13
AB209997_1(AB209997|pid:none) Homo sapiens mRNA for MYO9B varian... 78 8e-13
BC060628_1(BC060628|pid:none) Mus musculus Gem-interacting prote... 78 8e-13
AK220317_1(AK220317|pid:none) Mus musculus mRNA for mFLJ00368 pr... 78 8e-13
AB208792_1(AB208792|pid:none) Homo sapiens mRNA for Rho GTPase a... 77 1e-12
AF022212_1(AF022212|pid:none) Homo sapiens Rho GTPase activating... 77 1e-12
BC150635_1(BC150635|pid:none) Homo sapiens Rho GTPase activating... 77 1e-12
AK293078_1(AK293078|pid:none) Homo sapiens cDNA FLJ77478 complet... 77 1e-12
CR382135_809(CR382135|pid:none) Debaryomyces hansenii chromosome... 77 1e-12
AF117067_1(AF117067|pid:none) Homo sapiens rho-type GTPase-activ... 77 1e-12
AK027567_1(AK027567|pid:none) Homo sapiens cDNA FLJ14661 fis, cl... 77 1e-12
AK297713_1(AK297713|pid:none) Homo sapiens cDNA FLJ59725 complet... 77 1e-12
AK303444_1(AK303444|pid:none) Homo sapiens cDNA FLJ55566 complet... 77 1e-12
CR382135_738(CR382135|pid:none) Debaryomyces hansenii strain CBS... 77 1e-12
(Q8NF34) RecName: Full=Rho GTPase-activating protein 19; AltName... 77 2e-12
(Q9BE31) RecName: Full=Rho GTPase-activating protein 12; AltName... 77 2e-12
AF012273_1(AF012273|pid:none) Mus musculus rho-type GTPase-activ... 77 2e-12
DQ338460_1(DQ338460|pid:none) Homo sapiens putative RhoGAP prote... 77 2e-12
BC144142_1(BC144142|pid:none) Homo sapiens GEM interacting prote... 77 2e-12
(Q9P107) RecName: Full=GEM-interacting protein; Short=G... 77 2e-12
AK298562_1(AK298562|pid:none) Homo sapiens cDNA FLJ60782 complet... 77 2e-12
CR749412_1(CR749412|pid:none) Homo sapiens mRNA; cDNA DKFZp313K2... 77 2e-12
AF067217_2(AF067217|pid:none) Caenorhabditis elegans cosmid F56A... 77 2e-12
T33079(T33079)hypothetical protein F56A6.2 - Caenorhabditis eleg... 77 2e-12
BC086680_1(BC086680|pid:none) Mus musculus Rho GTPase activating... 77 2e-12
AY190934_7(AY190934|pid:none) Drosophila erecta clone DERF01_13_... 76 3e-12
AM989983_21(AM989983|pid:none) Zygosaccharomyces rouxii strain C... 76 4e-12
FN392322_709(FN392322|pid:none) Pichia pastoris GS115 chromosome... 76 4e-12
T18289(T18289) racGAP protein - slime mold (Dictyostelium discoi... 76 4e-12
BC150728_1(BC150728|pid:none) Mus musculus T-cell activation Rho... 75 5e-12
AK048162_1(AK048162|pid:none) Mus musculus 16 days embryo head c... 75 7e-12
(O54834) RecName: Full=Rho GTPase-activating protein 6; AltName:... 75 7e-12
BC046844_1(BC046844|pid:none) Xenopus laevis Rho GTPase activati... 75 7e-12
AL035530_2(AL035530|pid:none) Human DNA sequence from clone RP1-... 75 9e-12
BC081595_1(BC081595|pid:none) Danio rerio T-cell activation GTPa... 74 1e-11
BX248246_1(BX248246|pid:none) Zebrafish DNA sequence from clone ... 74 1e-11
FM992695_48(FM992695|pid:none) Candida dubliniensis CD36 chromos... 74 1e-11
(Q9VDS5) RecName: Full=Rho GTPase-activating protein 92B; &AE01... 74 1e-11
BC123613_1(BC123613|pid:none) Bos taurus GEM interacting protein... 74 1e-11
AK125535_1(AK125535|pid:none) Homo sapiens cDNA FLJ43547 fis, cl... 74 2e-11
CR380949_230(CR380949|pid:none) Candida glabrata strain CBS138 c... 74 2e-11
BC101391_1(BC101391|pid:none) Homo sapiens Rho GTPase activating... 74 2e-11
CR859935_1(CR859935|pid:none) Pongo abelii mRNA; cDNA DKFZp469J0... 74 2e-11
(Q6ZUM4) RecName: Full=Rho GTPase-activating protein 27; AltName... 74 2e-11
AM270251_33(AM270251|pid:none) Aspergillus niger contig An11c034... 74 2e-11
BC124044_1(BC124044|pid:none) Xenopus tropicalis T-cell activati... 74 2e-11
(Q63744) RecName: Full=Rho GTPase-activating protein 7; AltName:... 74 2e-11
D31962_1(D31962|pid:none) Rat mRNA for RhoGAP, complete cds. 74 2e-11
(P46941) RecName: Full=WW domain-containing protein tag-325; &T... 73 3e-11
AK143916_1(AK143916|pid:none) Mus musculus adult male kidney cDN... 73 4e-11
(A2AB59) RecName: Full=Rho GTPase-activating protein 27; AltName... 73 4e-11
AY190957_10(AY190957|pid:none) Drosophila willistoni clone DWIF0... 73 4e-11
AK046763_1(AK046763|pid:none) Mus musculus 4 days neonate thymus... 73 4e-11
AK057573_1(AK057573|pid:none) Homo sapiens cDNA FLJ33011 fis, cl... 73 4e-11
AY190943_6(AY190943|pid:none) Drosophila virilis clone DVIF01_25... 73 4e-11
BX537291_1(BX537291|pid:none) Zebrafish DNA sequence from clone ... 73 4e-11
AL713803_1(AL713803|pid:none) Homo sapiens mRNA; cDNA DKFZp667F1... 72 5e-11
AB030239_1(AB030239|pid:none) Homo sapiens mRNA for RGL1, comple... 72 5e-11
BC006107_1(BC006107|pid:none) Homo sapiens Rho GTPase activating... 72 5e-11
AE014135_54(AE014135|pid:none) Drosophila melanogaster chromosom... 72 6e-11
AE013599_21(AE013599|pid:none) Drosophila melanogaster chromosom... 72 8e-11
BC142556_1(BC142556|pid:none) Xenopus laevis hypothetical protei... 72 8e-11
AL035419_7(AL035419|pid:none) Human DNA sequence from clone RP5-... 72 8e-11
AL035419_6(AL035419|pid:none) Human DNA sequence from clone RP5-... 72 8e-11
BC155472_1(BC155472|pid:none) Xenopus tropicalis hypothetical pr... 71 1e-10
CR790375_4(CR790375|pid:none) Zebrafish DNA sequence from clone ... 71 1e-10
T40040(T40040)GTPase-activator protein for Rho-like GTPases - fi... 71 1e-10
(O74360) RecName: Full=Probable Rho-type GTPase-activating prote... 71 1e-10
FN357440_27(FN357440|pid:none) Schistosoma mansoni genome sequen... 71 1e-10
(Q7Z6B7) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 1... 70 2e-10
AK166015_1(AK166015|pid:none) Mus musculus lung RCB-0558 LLC cDN... 70 2e-10
AK023899_1(AK023899|pid:none) Homo sapiens cDNA FLJ13837 fis, cl... 70 2e-10
(O43052) RecName: Full=Rho-type GTPase-activating protein 1; &A... 70 2e-10
BC113888_1(BC113888|pid:none) Homo sapiens Rho GTPase activating... 70 2e-10
(Q9P227) RecName: Full=Rho GTPase-activating protein 23; AltName... 70 2e-10
BT072468_1(BT072468|pid:none) Salmo salar clone ssal-rgf-526-265... 70 2e-10
AK173187_1(AK173187|pid:none) Mus musculus mRNA for mKIAA1501 pr... 70 2e-10
BX927072_1(BX927072|pid:none) Zebrafish DNA sequence from clone ... 70 2e-10
AL596088_3(AL596088|pid:none) Mouse DNA sequence from clone RP23... 70 2e-10
A59434(A59434;B59434) KIAA1501 protein [imported] - human &AB04... 70 2e-10
BC156106_1(BC156106|pid:none) Synthetic construct Mus musculus c... 70 2e-10
AK162413_1(AK162413|pid:none) Mus musculus adult male diencephal... 70 3e-10
(O14014) RecName: Full=Probable Rho-type GTPase-activating prote... 69 4e-10
EU832224_1(EU832224|pid:none) Synthetic construct Homo sapiens c... 69 4e-10
BC159092_1(BC159092|pid:none) Xenopus tropicalis histocompatibil... 69 4e-10
AB051510_1(AB051510|pid:none) Homo sapiens mRNA for KIAA1723 pro... 69 4e-10
BC054511_1(BC054511|pid:none) Homo sapiens deleted in liver canc... 69 4e-10
AB384275_1(AB384275|pid:none) Synthetic construct DNA, clone: pF... 69 4e-10
(Q9DBZ9) RecName: Full=Rho GTPase-activating protein SYDE1; AltN... 69 4e-10
AK291682_1(AK291682|pid:none) Homo sapiens cDNA FLJ78668 complet... 69 4e-10
AF026219_1(AF026219|pid:none) Homo sapiens HP protein (HP) mRNA,... 69 4e-10
AK299049_1(AK299049|pid:none) Homo sapiens cDNA FLJ59738 complet... 69 4e-10
AP007167_104(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 69 4e-10
A59438(A59438;B59438) KIAA1424 protein [imported] - human &AB03... 69 5e-10
BC152935_1(BC152935|pid:none) Synthetic construct Mus musculus c... 69 5e-10
AK295649_1(AK295649|pid:none) Homo sapiens cDNA FLJ54686 complet... 69 5e-10
(Q5T5U3) RecName: Full=Rho GTPase-activating protein 21; AltName... 69 5e-10
BC118915_1(BC118915|pid:none) Homo sapiens Rho GTPase activating... 69 5e-10
AK089051_1(AK089051|pid:none) Mus musculus 2 days neonate thymus... 69 7e-10
BC116621_1(BC116621|pid:none) Danio rerio Rho GTPase activating ... 69 7e-10
BX649606_14(BX649606|pid:none) Aspergillus fumigatus BAC pilot p... 69 7e-10
DQ498128_1(DQ498128|pid:none) Mus musculus ArhGAP9 (Arhgap9) mRN... 69 7e-10
AY313783_1(AY313783|pid:none) Gallus gallus Rho GTPase activatin... 68 9e-10
AL773540_3(AL773540|pid:none) Mouse DNA sequence from clone RP23... 68 9e-10
AF029913_1(AF029913|pid:none) Cochliobolus heterostrophus GTPase... 68 9e-10
AL773540_2(AL773540|pid:none) Mouse DNA sequence from clone RP23... 68 9e-10
BC150741_1(BC150741|pid:none) Mus musculus Rho GTPase activating... 68 9e-10
BC151638_1(BC151638|pid:none) Bos taurus deleted in liver cancer... 68 9e-10
AK122508_1(AK122508|pid:none) Mus musculus premature mRNA for mK... 68 9e-10
(Q6DFV3) RecName: Full=Rho GTPase-activating protein 21; AltName... 68 9e-10
AF027687_1(AF027687|pid:none) Cochliobolus heterostrophus GTPase... 68 9e-10
FN318883_1(FN318883|pid:none) Schistosoma japonicum isolate Anhu... 68 1e-09
AE016815_4(AE016815|pid:none) Ashbya gossypii (= Eremothecium go... 68 1e-09
BC154705_1(BC154705|pid:none) Xenopus tropicalis hypothetical pr... 68 1e-09
(Q91Z69) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 1... 68 1e-09
(Q54C77) RecName: Full=Probable inactive serine/threonine-protei... 67 2e-09
FN357292_139(FN357292|pid:none) Schistosoma mansoni genome seque... 67 2e-09
FM992691_175(FM992691|pid:none) Candida dubliniensis CD36 chromo... 67 2e-09
BC080423_1(BC080423|pid:none) Xenopus laevis MGC86436 protein, m... 67 3e-09
(Q3KRB8) RecName: Full=Rho GTPase-activating protein 11B; AltNam... 67 3e-09
AF035119_1(AF035119|pid:none) Homo sapiens deleted in liver canc... 66 3e-09
AB007925_1(AB007925|pid:none) Homo sapiens mRNA for KIAA0456 pro... 66 3e-09
AK293335_1(AK293335|pid:none) Homo sapiens cDNA FLJ61210 complet... 66 3e-09
BC132872_1(BC132872|pid:none) Homo sapiens SLIT-ROBO Rho GTPase ... 66 3e-09
AL139187_1(AL139187|pid:none) Human DNA sequence from clone RP11... 66 3e-09
T20802(T20802) hypothetical protein F12F6.5 - Caenorhabditis ele... 66 3e-09
(O75044) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 2... 66 3e-09
AC116305_32(AC116305|pid:none) Dictyostelium discoideum chromoso... 66 3e-09
BC144343_1(BC144343|pid:none) Homo sapiens SLIT-ROBO Rho GTPase ... 66 3e-09
AY366448_1(AY366448|pid:none) Homo sapiens chromosome 13 Rho GTP... 66 3e-09
(Q86XT1) RecName: Full=StAR-related lipid transfer protein 13; A... 66 3e-09
BX647695_1(BX647695|pid:none) Homo sapiens mRNA; cDNA DKFZp686I0... 66 3e-09
(Q17QN0) RecName: Full=N-chimaerin; AltName: Full=N-chimerin; ... 66 4e-09
BC070822_1(BC070822|pid:none) Xenopus laevis hypothetical protei... 66 4e-09
BC027830_1(BC027830|pid:none) Mus musculus StAR-related lipid tr... 66 4e-09
AC117075_47(AC117075|pid:none) Dictyostelium discoideum chromoso... 65 6e-09
(Q6PAJ1) RecName: Full=Breakpoint cluster region protein; ... 65 6e-09
FN357417_18(FN357417|pid:none) Schistosoma mansoni genome sequen... 65 6e-09
BC140763_1(BC140763|pid:none) Homo sapiens oligophrenin 1, mRNA ... 65 7e-09
AK095114_1(AK095114|pid:none) Homo sapiens cDNA FLJ37795 fis, cl... 65 7e-09
AB171295_1(AB171295|pid:none) Macaca fascicularis brain cDNA clo... 65 7e-09
BC035541_1(BC035541|pid:none) Mus musculus glucocorticoid recept... 65 7e-09
(Q91YM2) RecName: Full=Glucocorticoid receptor DNA-binding facto... 65 7e-09
BC048842_1(BC048842|pid:none) Mus musculus breakpoint cluster re... 65 7e-09
AK136202_1(AK136202|pid:none) Mus musculus in vitro fertilized e... 65 7e-09
AK129482_1(AK129482|pid:none) Mus musculus mRNA for mKIAA3017 pr... 65 7e-09
BC002193_1(BC002193|pid:none) Mus musculus breakpoint cluster re... 65 7e-09
BC046676_1(BC046676|pid:none) Xenopus laevis similar to Rac GTPa... 65 7e-09
BC054770_1(BC054770|pid:none) Mus musculus chimerin (chimaerin) ... 65 7e-09
FN392320_1232(FN392320|pid:none) Pichia pastoris GS115 chromosom... 65 7e-09
(O60890) RecName: Full=Oligophrenin-1; &AB102656_1(AB102656|pid... 65 7e-09
(Q923Q2) RecName: Full=StAR-related lipid transfer protein 13; A... 65 7e-09
FN392319_1213(FN392319|pid:none) Pichia pastoris GS115 chromosom... 65 1e-08
BX005226_1(BX005226|pid:none) Zebrafish DNA sequence from clone ... 65 1e-08
BX842635_27(BX842635|pid:none) Neurospora crassa DNA linkage gro... 65 1e-08
AK006398_1(AK006398|pid:none) Mus musculus adult male testis cDN... 65 1e-08
AP007161_355(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 65 1e-08
AF159851_1(AF159851|pid:none) Homo sapiens Rho GAP p190-A mRNA, ... 65 1e-08
(Q80XD1) RecName: Full=Beta-chimaerin; AltName: Full=Beta-chimer... 65 1e-08
BC168690_1(BC168690|pid:none) Rattus norvegicus SLIT-ROBO Rho GT... 65 1e-08
AK160255_1(AK160255|pid:none) Mus musculus adult male testis cDN... 65 1e-08
AK315453_1(AK315453|pid:none) Homo sapiens cDNA, FLJ96511. 65 1e-08
(P30337) RecName: Full=N-chimaerin; AltName: Full=N-chimerin; ... 64 1e-08
(P83509) RecName: Full=Glucocorticoid receptor DNA-binding facto... 64 1e-08
AL845168_4(AL845168|pid:none) Zebrafish DNA sequence from clone ... 64 1e-08
S29128(S29128;S25152) N-chimerin - rat &X67250_1(X67250|pid:none) 64 1e-08
(Q03070) RecName: Full=Beta-chimaerin; AltName: Full=Beta-chimer... 64 1e-08
AK298356_1(AK298356|pid:none) Homo sapiens cDNA FLJ56603 complet... 64 2e-08
(Q6DFG0) RecName: Full=Rho GTPase-activating protein 21-A; AltNa... 64 2e-08
(Q9NRY4) RecName: Full=Glucocorticoid receptor DNA-binding facto... 64 2e-08
CR382136_894(CR382136|pid:none) Debaryomyces hansenii chromosome... 64 2e-08
BC170466_1(BC170466|pid:none) Xenopus laevis Rho GTPase activati... 64 2e-08
AL591143_2(AL591143|pid:none) Mouse DNA sequence from clone RP23... 64 2e-08
AL591143_4(AL591143|pid:none) Mouse DNA sequence from clone RP23... 64 2e-08
AK134993_1(AK134993|pid:none) Mus musculus adult male olfactory ... 64 2e-08
AF332069_1(AF332069|pid:none) Mus musculus strain ISS n-chimaeri... 64 2e-08
CR394528_1(CR394528|pid:none) Zebrafish DNA sequence from clone ... 64 2e-08
BC051139_1(BC051139|pid:none) Mus musculus chimerin (chimaerin) ... 64 2e-08
BC137891_1(BC137891|pid:none) Mus musculus RIKEN cDNA 9030420J04... 64 2e-08
(A6QNS3) RecName: Full=Active breakpoint cluster region-related ... 64 2e-08
AL772405_5(AL772405|pid:none) Mouse DNA sequence from clone RP23... 63 3e-08
Y00661_1(Y00661|pid:none) Human bcr mRNA (break point cluster ge... 63 3e-08
BC065223_1(BC065223|pid:none) Homo sapiens histocompatibility (m... 63 3e-08
D59433(D59433;E59433) C. elegans protein Z37093 homolog [importe... 63 3e-08
AL772405_4(AL772405|pid:none) Mouse DNA sequence from clone RP23... 63 3e-08
AK049943_1(AK049943|pid:none) Mus musculus adult male hippocampu... 63 3e-08
AK299909_1(AK299909|pid:none) Homo sapiens cDNA FLJ54747 complet... 63 3e-08
(Q80Y19) RecName: Full=Rho GTPase-activating protein 11A; AltNam... 63 3e-08
AK300341_1(AK300341|pid:none) Homo sapiens cDNA FLJ58624 complet... 63 3e-08
BC070794_1(BC070794|pid:none) Xenopus laevis hypothetical protei... 63 3e-08
EU652316_3(EU652316|pid:none) Adineta vaga dihydrogenpyrimidine ... 63 3e-08
AK082551_1(AK082551|pid:none) Mus musculus 0 day neonate cerebel... 63 3e-08
BC035564_1(BC035564|pid:none) Homo sapiens histocompatibility (m... 63 3e-08
AK129034_1(AK129034|pid:none) Mus musculus mRNA for mKIAA0013 pr... 63 3e-08
BC048129_1(BC048129|pid:none) Homo sapiens histocompatibility (m... 63 3e-08
(Q12979) RecName: Full=Active breakpoint cluster region-related ... 63 3e-08
AB384846_1(AB384846|pid:none) Synthetic construct DNA, clone: pF... 63 3e-08
BC089149_1(BC089149|pid:none) Xenopus laevis hypothetical protei... 63 3e-08
BC076756_1(BC076756|pid:none) Xenopus laevis hypothetical protei... 63 3e-08
AK295769_1(AK295769|pid:none) Homo sapiens cDNA FLJ60067 complet... 63 4e-08
BC114099_1(BC114099|pid:none) Bos taurus chimerin (chimaerin) 2,... 63 4e-08
EU732762_1(EU732762|pid:none) Homo sapiens beta chimaerin isofor... 62 5e-08
AL627325_10(AL627325|pid:none) Zebrafish DNA sequence from clone... 62 5e-08
(Q5VT97) RecName: Full=Rho GTPase-activating protein SYDE2; AltN... 62 5e-08
BC167520_1(BC167520|pid:none) Xenopus tropicalis hypothetical pr... 62 5e-08
AE017350_249(AE017350|pid:none) Cryptococcus neoformans var. neo... 62 5e-08
AK294032_1(AK294032|pid:none) Homo sapiens cDNA FLJ58755 complet... 62 5e-08
AM270339_38(AM270339|pid:none) Aspergillus niger contig An15c012... 62 5e-08
AC024755_8(AC024755|pid:none) Caenorhabditis elegans cosmid Y34B... 62 5e-08
A53764(A53764) beta2-chimerin, cerebellar - human &L29126_1(L29... 62 5e-08
(P52757) RecName: Full=Beta-chimaerin; AltName: Full=Beta-chimer... 62 5e-08
AC007255_1(AC007255|pid:none) Homo sapiens BAC clone RP11-550A18... 62 5e-08
(Q6ZM89) RecName: Full=Rho GTPase-activating protein 10-like; 62 5e-08
AK316030_1(AK316030|pid:none) Homo sapiens cDNA, FLJ78929 comple... 62 5e-08
BC013071_1(BC013071|pid:none) Homo sapiens KIAA1688 protein, mRN... 62 6e-08
AK092501_1(AK092501|pid:none) Homo sapiens cDNA FLJ35182 fis, cl... 62 6e-08
(Q9C0H5) RecName: Full=Uncharacterized protein KIAA1688; &AB384... 62 6e-08
AK296353_1(AK296353|pid:none) Homo sapiens cDNA FLJ61300 complet... 62 6e-08
BC166229_1(BC166229|pid:none) Xenopus tropicalis hypothetical pr... 62 6e-08
CR942686_1(CR942686|pid:none) Xenopus tropicalis finished cDNA, ... 62 6e-08
CU633438_916(CU633438|pid:none) Podospora anserina genomic DNA c... 62 6e-08
AL732320_3(AL732320|pid:none) Mouse DNA sequence from clone RP23... 62 6e-08
BC167605_1(BC167605|pid:none) Xenopus tropicalis hypothetical pr... 62 8e-08
AB208873_1(AB208873|pid:none) Homo sapiens mRNA for PTPL1-associ... 62 8e-08
AC117070_7(AC117070|pid:none) Dictyostelium discoideum chromosom... 62 8e-08
BC110739_1(BC110739|pid:none) Xenopus laevis hypothetical protei... 62 8e-08
BC047837_1(BC047837|pid:none) Danio rerio chimerin (chimaerin) 1... 62 8e-08
AY684586_1(AY684586|pid:none) Danio rerio chimaerin mRNA, comple... 62 8e-08
(Q52LW3) RecName: Full=Rho GTPase-activating protein 29; AltName... 62 8e-08
AK302682_1(AK302682|pid:none) Homo sapiens cDNA FLJ60982 complet... 62 8e-08
BC083540_1(BC083540|pid:none) Danio rerio chimerin (chimaerin) 1... 62 8e-08
BC093741_1(BC093741|pid:none) Homo sapiens Rho GTPase activating... 62 8e-08
CR382125_33(CR382125|pid:none) Kluyveromyces lactis strain NRRL ... 61 1e-07
EU850438_10(EU850438|pid:none) Adineta vaga hypothetical protein... 61 1e-07
FN392319_159(FN392319|pid:none) Pichia pastoris GS115 chromosome... 61 1e-07
AK301235_1(AK301235|pid:none) Homo sapiens cDNA FLJ54558 complet... 61 1e-07
AF251038_1(AF251038|pid:none) Homo sapiens GAP-like protein (N61... 61 1e-07
AK304458_1(AK304458|pid:none) Homo sapiens cDNA FLJ55609 complet... 61 1e-07
BC109029_1(BC109029|pid:none) Homo sapiens Rho GTPase activating... 61 1e-07
EU652315_5(EU652315|pid:none) Adineta vaga speckle-type POZ prot... 61 1e-07
Z34800_1(Z34800|pid:none) Caenorhabditis elegans Cosmid F45H7, c... 61 1e-07
Z34800_2(Z34800|pid:none) Caenorhabditis elegans Cosmid F45H7, c... 61 1e-07
T22256(T22256)hypothetical protein F45H7.2 - Caenorhabditis eleg... 61 1e-07
CU928180_9(CU928180|pid:none) Kluyveromyces thermotolerans strai... 60 2e-07
BC060065_1(BC060065|pid:none) Mus musculus DNA segment, Chr 15, ... 60 2e-07
AK035479_1(AK035479|pid:none) Mus musculus adult male urinary bl... 60 2e-07
(O94466) RecName: Full=Probable Rho-GTPase-activating protein 7;... 60 2e-07
AY179967_1(AY179967|pid:none) Mus musculus Rho-GTPase-activating... 60 2e-07
BC121371_1(BC121371|pid:none) Xenopus tropicalis Active breakpoi... 60 2e-07
AM920427_34(AM920427|pid:none) Penicillium chrysogenum Wisconsin... 60 2e-07
BC089788_1(BC089788|pid:none) Rattus norvegicus ralA binding pro... 60 2e-07
(Q6Y5D8) RecName: Full=Rho GTPase-activating protein 10; AltName... 60 2e-07
BT029131_1(BT029131|pid:none) Drosophila melanogaster IP16137 fu... 60 2e-07
AY094969_1(AY094969|pid:none) Drosophila melanogaster SD08167 fu... 60 2e-07
U82623_1(U82623|pid:none) Rattus norvegicus cytocentrin mRNA, co... 60 2e-07
BC161070_1(BC161070|pid:none) Xenopus tropicalis chimerin (chima... 60 2e-07
BX908765_9(BX908765|pid:none) Zebrafish DNA sequence from clone ... 60 2e-07
AE013599_2673(AE013599|pid:none) Drosophila melanogaster chromos... 60 2e-07
AY179965_1(AY179965|pid:none) Mus musculus Rho-GTPase-activating... 60 2e-07
DQ486143_1(DQ486143|pid:none) Drosophila melanogaster RhoGAP18B-... 60 2e-07
AE014298_2622(AE014298|pid:none) Drosophila melanogaster chromos... 60 2e-07
AJ719917_1(AJ719917|pid:none) Gallus gallus mRNA for hypothetica... 60 2e-07
AE013599_2672(AE013599|pid:none) Drosophila melanogaster chromos... 60 2e-07
I38100(I38100) rho-GTPase-activating protein 4 - human &X78817_... 60 2e-07
(Q15311) RecName: Full=RalA-binding protein 1; Short=Ra... 60 2e-07
(Q8N392) RecName: Full=Rho GTPase-activating protein 18; AltName... 60 3e-07
BC145320_1(BC145320|pid:none) Mus musculus ralA binding protein ... 60 3e-07
(Q6IFT4) RecName: Full=Rho GTPase-activating protein 20; AltName... 60 3e-07
EU652317_9(EU652317|pid:none) Philodina roseola GTP binding prot... 60 3e-07
AK129345_1(AK129345|pid:none) Mus musculus mRNA for mKIAA1391 pr... 60 3e-07
AB053293_1(AB053293|pid:none) Homo sapiens MacGAP mRNA, complete... 60 3e-07
DQ481668_4(DQ481668|pid:none) Takifugu rubripes HoxDa gene clust... 60 3e-07
AY606035_1(AY606035|pid:none) Oncorhynchus mykiss T-cell activat... 60 3e-07
AB037812_1(AB037812|pid:none) Homo sapiens mRNA for KIAA1391 pro... 59 4e-07
AY634313_1(AY634313|pid:none) Xenopus laevis clone 904-4 D7 shir... 59 4e-07
BC169939_1(BC169939|pid:none) Xenopus laevis shirin, mRNA (cDNA ... 59 4e-07
(Q96M56) RecName: Full=Rho GTPase-activating protein FLJ32810; A... 59 4e-07
AY496267_1(AY496267|pid:none) Homo sapiens RhoGTPase regulating ... 59 4e-07
AC115604_14(AC115604|pid:none) Dictyostelium discoideum chromoso... 59 4e-07
AF410773_1(AF410773|pid:none) Venturia canescens virus-like part... 59 4e-07
AK171304_1(AK171304|pid:none) Mus musculus NOD-derived CD11c +ve... 59 4e-07
AK159194_1(AK159194|pid:none) Mus musculus osteoclast-like cell ... 59 4e-07
(Q3TBD2) RecName: Full=Minor histocompatibility protein HA-1; 59 4e-07
BC077177_1(BC077177|pid:none) Xenopus laevis Rho GTPase activati... 59 4e-07
(A7YY57) RecName: Full=Rho GTPase-activating protein 29; AltName... 59 4e-07
(A6NI28) RecName: Full=Rho GTPase-activating protein 10-like; 59 4e-07
AK170262_1(AK170262|pid:none) Mus musculus NOD-derived CD11c +ve... 59 4e-07
(Q9P2F6) RecName: Full=Rho GTPase-activating protein 20; AltName... 59 4e-07
BC169942_1(BC169942|pid:none) Xenopus laevis shirin, mRNA (cDNA ... 59 4e-07
AK044860_1(AK044860|pid:none) Mus musculus 9.5 days embryo parth... 59 4e-07
AK134029_1(AK134029|pid:none) Mus musculus adult male thymus cDN... 59 4e-07
AY179966_1(AY179966|pid:none) Mus musculus Rho-GTPase-activating... 59 5e-07
EU832118_1(EU832118|pid:none) Synthetic construct Homo sapiens c... 59 5e-07
(Q9NYF5) RecName: Full=Protein FAM13B; AltName: Full=GAP-like pr... 59 5e-07
AK103870_1(AK103870|pid:none) Oryza sativa Japonica Group cDNA c... 59 5e-07
BC060637_1(BC060637|pid:none) Mus musculus DNA segment, Chr 15, ... 59 5e-07
AK314224_1(AK314224|pid:none) Homo sapiens cDNA, FLJ94962. 59 5e-07
Z68128_1(Z68128|pid:none) H.sapiens C1 gene. 59 5e-07
AM270414_17(AM270414|pid:none) Aspergillus niger contig An18c022... 59 5e-07
D50921_1(D50921|pid:none) Homo sapiens mRNA for KIAA0131 gene, p... 59 5e-07
FN357382_8(FN357382|pid:none) Schistosoma mansoni genome sequenc... 59 5e-07
AP003833_8(AP003833|pid:none) Oryza sativa Japonica Group genomi... 59 5e-07
EU732754_1(EU732754|pid:none) Homo sapiens beta chimaerin isofor... 59 5e-07
AM392626_1(AM392626|pid:none) Synthetic construct Homo sapiens c... 59 5e-07
AK000733_1(AK000733|pid:none) Homo sapiens cDNA FLJ20726 fis, cl... 59 7e-07
CR382135_362(CR382135|pid:none) Debaryomyces hansenii strain CBS... 59 7e-07
BC070617_1(BC070617|pid:none) Xenopus laevis hypothetical protei... 59 7e-07
BC157467_1(BC157467|pid:none) Xenopus laevis cDNA clone IMAGE:40... 59 7e-07
(Q9H0H5) RecName: Full=Rac GTPase-activating protein 1; AltName:... 59 7e-07
A38218(A38218)GAP-associated protein p190 - rat 58 9e-07
(Q9WVM1) RecName: Full=Rac GTPase-activating protein 1; AltName:... 58 9e-07
CR628365_11(CR628365|pid:none) Zebrafish DNA sequence from clone... 58 9e-07
EU850440_1(EU850440|pid:none) Philodina roseola rho GTPase activ... 58 9e-07
AK168025_1(AK168025|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 58 9e-07
AK166084_1(AK166084|pid:none) Mus musculus lung RCB-0558 LLC cDN... 58 9e-07
BC087167_1(BC087167|pid:none) Rattus norvegicus Rho GTPase activ... 58 9e-07
AK316947_1(AK316947|pid:none) Arabidopsis thaliana AT5G19390 mRN... 58 1e-06
AE014298_2(AE014298|pid:none) Drosophila melanogaster chromosome... 58 1e-06
CU638744_374(CU638744|pid:none) Podospora anserina genomic DNA c... 58 1e-06
BC134232_1(BC134232|pid:none) Danio rerio histocompatibility (mi... 58 1e-06
AC084268_3(AC084268|pid:none) Caenorhabditis elegans cosmid Y92H... 58 1e-06
(Q9PT60) RecName: Full=RalA-binding protein 1-A; Short=... 58 1e-06
EU956627_1(EU956627|pid:none) Zea mays clone 1568433 rho GTPase ... 58 1e-06
AK303591_1(AK303591|pid:none) Homo sapiens cDNA FLJ59112 complet... 58 1e-06
AF143684_1(AF143684|pid:none) Homo sapiens unconventional myosin... 57 2e-06
CR382128_388(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 57 2e-06
AK168020_1(AK168020|pid:none) Mus musculus cDNA, RIKEN full-leng... 57 2e-06
(Q6REY9) RecName: Full=Rho GTPase-activating protein 20; AltName... 57 2e-06
AL392104_8(AL392104|pid:none) Human DNA sequence from clone RP11... 57 2e-06
BC166473_1(BC166473|pid:none) Rattus norvegicus Rac GTPase-activ... 57 2e-06
AY501475_1(AY501475|pid:none) Rattus norvegicus RA and RhoGAP do... 57 2e-06
BC059290_1(BC059290|pid:none) Xenopus laevis hypothetical protei... 57 2e-06
B47485(B47485)ABR protein 2 - human 57 2e-06
AK315785_1(AK315785|pid:none) Homo sapiens cDNA, FLJ96901, highl... 57 2e-06
(Q92502) RecName: Full=StAR-related lipid transfer protein 8; Al... 57 2e-06
CR749411_1(CR749411|pid:none) Homo sapiens mRNA; cDNA DKFZp686H1... 57 2e-06
AB209751_1(AB209751|pid:none) Homo sapiens mRNA for Rho GTPase a... 57 3e-06
AE017346_285(AE017346|pid:none) Cryptococcus neoformans var. neo... 57 3e-06
AJ304845_1(AJ304845|pid:none) Xenopus laevis partial mRNA for Ra... 57 3e-06
(O43295) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 3... 57 3e-06
(Q13017) RecName: Full=Rho GTPase-activating protein 5; AltName:... 57 3e-06
BC050059_1(BC050059|pid:none) Homo sapiens Rho GTPase activating... 56 3e-06
AB030251_1(AB030251|pid:none) Homo sapiens MgcRacGAP mRNA for GT... 56 3e-06
BX005476_1(BX005476|pid:none) Zebrafish DNA sequence from clone ... 56 3e-06
U02289_1(U02289|pid:none) Caenorhabditis elegans Bristol N2 GTPa... 56 3e-06
AM920429_120(AM920429|pid:none) Penicillium chrysogenum Wisconsi... 56 3e-06
(Q06407) RecName: Full=Rho-type GTPase-activating protein 2; &S... 56 3e-06
AL663026_3(AL663026|pid:none) Mouse DNA sequence from clone RP23... 56 3e-06
EU752496_1(EU752496|pid:none) Caenorhabditis elegans PAR-6-at-co... 56 3e-06
U28741_7(U28741|pid:none) Caenorhabditis elegans cosmid F35D2, c... 56 3e-06
AK133927_1(AK133927|pid:none) Mus musculus 8 days embryo whole b... 56 3e-06
(Q8K031) RecName: Full=StAR-related lipid transfer protein 8; Al... 56 3e-06
L16687_1(L16687|pid:none) Caenorhabditis elegans cosmid C04D8, c... 56 3e-06
AF546880_1(AF546880|pid:none) Caenorhabditis elegans axon identi... 56 3e-06
L16687_2(L16687|pid:none) Caenorhabditis elegans cosmid C04D8, c... 56 3e-06
(Q8K2H3) RecName: Full=Protein FAM13B; &BC031465_1(BC031465|pid... 56 4e-06
(Q640N3) RecName: Full=Rho GTPase-activating protein 30; AltName... 56 4e-06
AK001833_1(AK001833|pid:none) Homo sapiens cDNA FLJ10971 fis, cl... 56 4e-06
BC151274_1(BC151274|pid:none) Bos taurus Rho GTPase activating p... 56 4e-06
AJ252165_1(AJ252165|pid:none) Xenopus laevis partial mRNA for Ra... 56 4e-06
BC082573_1(BC082573|pid:none) Mus musculus Rho GTPase activating... 56 4e-06
AY364311_1(AY364311|pid:none) Oryza sativa (japonica cultivar-gr... 55 6e-06
AX056907_1(AX056907|pid:none) Sequence 47 from Patent WO0075320.... 55 6e-06
AB007871_1(AB007871|pid:none) Homo sapiens KIAA0411 mRNA, partia... 55 6e-06
(Q7Z6I6) RecName: Full=Rho GTPase-activating protein 30; AltName... 55 6e-06
AB384477_1(AB384477|pid:none) Synthetic construct DNA, clone: pF... 55 6e-06
AP008208_2159(AP008208|pid:none) Oryza sativa (japonica cultivar... 55 6e-06
AB463226_1(AB463226|pid:none) Synthetic construct DNA, clone: pF... 55 6e-06
AK160366_1(AK160366|pid:none) Homo sapiens mRNA for FLJ00267 pro... 55 6e-06
BC068777_1(BC068777|pid:none) Xenopus laevis hypothetical protei... 55 6e-06
AX268336_1(AX268336|pid:none) Sequence 1 from Patent WO0175106. ... 55 6e-06
(Q5U4T3) RecName: Full=Rho GTPase-activating protein 26; AltName... 55 6e-06
U80955_10(U80955|pid:none) Caenorhabditis elegans cosmid T04C9, ... 55 8e-06
AB014521_1(AB014521|pid:none) Homo sapiens mRNA for KIAA0621 pro... 55 8e-06
B59431(B59431) Rho GTPase activating protein 5 (p190-B) [importe... 55 8e-06
(Q6PCS4) RecName: Full=Rho GTPase-activating protein 29; AltName... 55 8e-06
AL031263_3(AL031263|pid:none) S.pombe chromosome II cosmid c17F3. 55 8e-06
AK005660_1(AK005660|pid:none) Mus musculus adult male testis cDN... 55 8e-06
CR380957_440(CR380957|pid:none) Candida glabrata strain CBS138 c... 55 8e-06
BC068555_1(BC068555|pid:none) Homo sapiens Rho GTPase activating... 55 8e-06
AK132965_1(AK132965|pid:none) Mus musculus adult male testis cDN... 55 8e-06
AJ309466_1(AJ309466|pid:none) Homo sapiens partial GRAF gene, ex... 55 8e-06
BT026234_1(BT026234|pid:none) Bos taurus Hypothetical protein FL... 55 8e-06
T29005(T29005)hypothetical protein ZK328.3 - Caenorhabditis eleg... 55 8e-06
BC151396_1(BC151396|pid:none) Bos taurus StAR-related lipid tran... 55 1e-05
BC121416_1(BC121416|pid:none) Xenopus tropicalis Rho GTPase acti... 55 1e-05
AY085460_1(AY085460|pid:none) Arabidopsis thaliana clone 152557 ... 55 1e-05
BC121905_1(BC121905|pid:none) Xenopus tropicalis oligophrenin 1,... 55 1e-05
AB049856_1(AB049856|pid:none) Macaca fascicularis brain cDNA, cl... 55 1e-05
CR450809_2(CR450809|pid:none) Zebrafish DNA sequence from clone ... 55 1e-05
AL031884_3(AL031884|pid:none) Drosophila melanogaster cosmid clo... 54 1e-05

>BC108400_1(BC108400|pid:none) Mus musculus Rho GTPase activating
protein 25, mRNA (cDNA clone IMAGE:30143208), partial
cds.
Length = 532

Score = 94.4 bits (233), Expect = 1e-17
Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 2/204 (0%)
Frame = +3

Query: 357 VFGISLDTLIAKEKSMELR-IPTFVSNILNTLFLHSLGVEGLFRISGSQMEIQNRRGIVN 533
VFG LD +A E+ +P V + H + EG+FR+ G ++ R +
Sbjct: 41 VFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGVSEEGIFRLPGQDNLVKQLRDAFD 100

Query: 534 LGDY-STSRDDNPHVLTVLLKQFLRDLPEPICTNALYDLFLAASDQINFQQCKENGFEVL 710
G+ S RD + H + LLK +LRDLPEP+ + Y+ FL +N + K E++
Sbjct: 101 AGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQ-ELV 159

Query: 711 KKLINSNLPVNNRNLLQHLIHFLRFVAMNQTVNLMGPSNLSRVFGPNLFWKKETGPLDIQ 890
K+L S LP +N NLL ++ FL + +N VN M NL+ V G NL K P
Sbjct: 160 KQL--STLPRDNYNLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDP---A 214

Query: 891 ILQSTSEKVNFITEQMILHYDTLF 962
++ + ++ + MI ++ LF
Sbjct: 215 VIMRGTPQIQRVMTMMIRDHEVLF 238

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,524,524,500
Number of extensions: 50080087
Number of successful extensions: 114928
Number of sequences better than 10.0: 715
Number of HSP's gapped: 113713
Number of HSP's successfully gapped: 720
Length of query: 556
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 422
Effective length of database: 617,481,958
Effective search space: 260577386276
Effective search space used: 260577386276
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.63 gvh: 0.34 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U12425-1 is cyt

VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0