Contig-U12414-1
Contig ID Contig-U12414-1
Contig update 2002.12.18
Contig sequence
>Contig-U12414-1 (Contig-U12414-1Q) /CSM_Contig/Contig-U12414-1Q.Seq.d
AGTAAAATCATTGAACGTGTTGCAGGTTGGGCATTAATGAAACAAAAAGC
AGATTTAATTCATTCAACAAGTGGTAGACAATCAAAAACCACATTGATTA
AATCGATTTCCAAATTGGATGATGCAAATTGGGCAGGTGGATTAAAATCA
AAGGAATGTACATTGATTATAACTGAAGGTGATTCTGCAAAATCATTAGC
ATTGGCAGGTTTAAGTGTAGTTGGTCGTAATTCATATGGTGTTTTCCCAT
TACGTGGTAAGCTATTGAATGTACGTGATGTCGCTTCAAAACAATTATTA
TCCAATGAAGAAATTAATAATCTTACCACCATTTTGGGTTTATCTCATAA
AAATTCCTATGATACCGATGAAAGTATGGAAGATTTACGTTATGGTAGAG
TTATGATTATGGCCGATCAAGATCATGATGGTTCACATATTAAAGGTTTA
GTTATGAATTTCATTCACTACTTTTGGCCAAATCTTTTGAAACGTGGTTT
CCTTGTAGAATTTGTTACACCAATCATAAAAGCAACTAAAAGTTCAACTC
AAAAGAAATCTTTCTTTACCATTAAAGACTATGAAAAATGGNNNNNNNNN
----------NNNNNNNNNNAAGATTTAACTGAAAATGAGTTAATAAAGC
TANTCAAGTTATCAGCTTCTCTTAATTTCCATTTAACATGTTTCGATGAA
AATTCAAAAATTCAAAAATTAGAATCTGTTGAAGAAATCATTGATCAATT
CTATAAAGTTCGTTTACAATTCTATGGAAAACGTAGAGAATNCCTCTTGA
AATCATTGGATAATCAAATTAAACGTTTAACAGACTACAGATACAATTCC
TTGAAGTTATTGCAAGTGGTAAATTAAAAATTCAAGGTAGATCAAAACAA
GATTTAATCAAAGAGTTGGAAAGTGGTGAAATTGTTGGTTTCGAAAATTT
TGGAACTCATCCACCAGAGGTTTATCAACATCTTTTCTNTTTATCAATTT
TAGATATTACAAAAGAAAGAATTGATAATTTAAGGTAATCAATTAACAAA
AAGAAAATNTGAACATCAATCAATTTCATCTTCTGATCCAAAATCACTTT
GGACTGCTGATTTACAACAATTAAAAGAATATTTAGAAAAAAGTGATAAA
GAATTTCAAAAAAAACCTTTAAACAACTTCCTCTTCTTCATCATTTGATG
TTTCTTCTTCTTCTGAATCTGCAAAATTATCTTCAACTAGAAAATCAAAA
ACTGATAAAATTAAATCAAAATAAAAAAACTATTTTAATATTTAA

Gap gap included
Contig length 1285
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2482304
End point 2481038
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U12414
List of clone(s)

est1=VHC388F,1,591
est2=VHC388Z,592,1267
Translated Amino Acid sequence
SKIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLIITEG
DSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHKNSY
DTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKATK
SSTQKKSFFTIKDYEKWXXX---

---XXXXDLTENELIKLXKLSASLNFHLTCFDENSKIQKLESVEEIIDQFYKVRLQFYGK
RREXLLKSLDNQIKRLTDYRYNSLKLLQVVN*kfkvdqnki*skswkvvkllvskileli
hqrfinifsxyqf*ilqkkelii*gnqltkrkxehqsisssdpkslwtadlqqlkeylek
sdkefqkkplnnflffii*cffff*ickiifn*kikn**n*ikikklf*yl


Translated Amino Acid sequence (All Frames)
Frame A:
SKIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLIITEG
DSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHKNSY
DTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKATK
SSTQKKSFFTIKDYEKWXXX---

---XXXXDLTENELIKLXKLSASLNFHLTCFDENSKIQKLESVEEIIDQFYKVRLQFYGK
RREXLLKSLDNQIKRLTDYRYNSLKLLQVVN*kfkvdqnki*skswkvvkllvskileli
hqrfinifsxyqf*ilqkkelii*gnqltkrkxehqsisssdpkslwtadlqqlkeylek
sdkefqkkplnnflffii*cffff*ickiifn*kikn**n*ikikklf*yl

Frame B:
vkslnvlqvgh**nkkqi*fiqqvvdnqkph*lnrfpnwmmqigqvd*nqrnvh*l*lkv
ilqnh*hwqv*v*lvvihmvfshyvvsy*myvmslqnnyypmkkliilppfwvylikipm
ipmkvwkiyvmvel*lwpikimmvhilkv*l*isfttfgqif*nvvsl*nllhqs*kqlk
vqlkrnlslplktmkngxx---

---xxxki*lkms**sxssyqlllisi*hvsmkiqkfkn*nllkkslinsikfvynsmen
venxs*nhwiiklnv*qttdtip*syckw*iknsr*iktrfnqrvgkw*ncwfrkfwnss
trglstsflfinfryykrkn**fkvin*qkenxninqfhlliqnhfglliynn*kni*kk
viknfkknl*ttsssssfdvssssesaklsstrksktdkiksk*knyfni*

Frame C:
*nh*tccrlginetksrfnsfnkw*tiknhid*idfqig*cklgrwikikgmyidyn*r*
fckiisigrfkcsws*fiwcfpitw*aiect*crfktiiiq*rn**syhhfgfis*kfl*
yr*kygrftlw*sydygrsrs*wfty*rfsyefhslllaksfetwfpcricytnhksn*k
fnskeiflyh*rl*kmxxx---

---xxxrfn*k*vnkaxqvisfs*fpfnmfr*kfknskiric*rnh*sil*ssftilwkt
*rxpleiig*sn*tfnrlqiqfleviasgklkiqgrskqdlikelesgeivgfenfgthp
pevyqhlfxlsilditkeridnlr*sinkkkx*tsinfif*skitldc*fttikrifrkk
**riskktfkqlpllhhlmfllllnlqnylqlenqkliklnqnkktilif

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12414-1 (Contig-U12414-1Q)
/CSM_Contig/Contig-U12414-1Q.Seq.d
(1295 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12414-1 (Contig-U12414-1Q) /CSM_Contig/Conti... 1172 0.0
Contig-U11101-1 (Contig-U11101-1Q) /CSM_Contig/Conti... 82 2e-15
Contig-U02608-1 (Contig-U02608-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11396-1 (Contig-U11396-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U04089-1 (Contig-U04089-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U14745-1 (Contig-U14745-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U12728-1 (Contig-U12728-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U12057-1 (Contig-U12057-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U11983-1 (Contig-U11983-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U05090-1 (Contig-U05090-1Q) /CSM_Contig/Conti... 38 0.023

>Contig-U12414-1 (Contig-U12414-1Q) /CSM_Contig/Contig-U12414-1Q.Seq.d
Length = 1295

Score = 1172 bits (591), Expect = 0.0
Identities = 591/591 (100%)
Strand = Plus / Plus


Query: 1 agtaaaatcattgaacgtgttgcaggttgggcattaatgaaacaaaaagcagatttaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtaaaatcattgaacgtgttgcaggttgggcattaatgaaacaaaaagcagatttaatt 60


Query: 61 cattcaacaagtggtagacaatcaaaaaccacattgattaaatcgatttccaaattggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattcaacaagtggtagacaatcaaaaaccacattgattaaatcgatttccaaattggat 120


Query: 121 gatgcaaattgggcaggtggattaaaatcaaaggaatgtacattgattataactgaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatgcaaattgggcaggtggattaaaatcaaaggaatgtacattgattataactgaaggt 180


Query: 181 gattctgcaaaatcattagcattggcaggtttaagtgtagttggtcgtaattcatatggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gattctgcaaaatcattagcattggcaggtttaagtgtagttggtcgtaattcatatggt 240


Query: 241 gttttcccattacgtggtaagctattgaatgtacgtgatgtcgcttcaaaacaattatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttttcccattacgtggtaagctattgaatgtacgtgatgtcgcttcaaaacaattatta 300


Query: 301 tccaatgaagaaattaataatcttaccaccattttgggtttatctcataaaaattcctat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccaatgaagaaattaataatcttaccaccattttgggtttatctcataaaaattcctat 360


Query: 361 gataccgatgaaagtatggaagatttacgttatggtagagttatgattatggccgatcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gataccgatgaaagtatggaagatttacgttatggtagagttatgattatggccgatcaa 420


Query: 421 gatcatgatggttcacatattaaaggtttagttatgaatttcattcactacttttggcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatcatgatggttcacatattaaaggtttagttatgaatttcattcactacttttggcca 480


Query: 481 aatcttttgaaacgtggtttccttgtagaatttgttacaccaatcataaaagcaactaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatcttttgaaacgtggtttccttgtagaatttgttacaccaatcataaaagcaactaaa 540


Query: 541 agttcaactcaaaagaaatctttctttaccattaaagactatgaaaaatgg 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agttcaactcaaaagaaatctttctttaccattaaagactatgaaaaatgg 591


Score = 1158 bits (584), Expect = 0.0
Identities = 612/620 (98%)
Strand = Plus / Plus


Query: 621 aagatttaactgaaaatgagttaataaagctantcaagttatcagcttctcttaatttcc 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagatttaactgaaaatgagttaataaagctantcaagttatcagcttctcttaatttcc 680


Query: 681 atttaacatgtttcgatgaaaattcaaaaattcaaaaattagaatctgttgaagaaatca 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaacatgtttcgatgaaaattcaaaaattcaaaaattagaatctgttgaagaaatca 740


Query: 741 ttgatcaattctataaagttcgtttacaattctatggaaaacgtagagaatncctcttga 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgatcaattctataaagttcgtttacaattctatggaaaacgtagagaatncctcttga 800


Query: 801 aatcattggataatcaaattaaacgtttaacagactacagatacaattccttgaagttat 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatcattggataatcaaattaaacgtttaacagactacagatacaattccttgaagttat 860


Query: 861 tgcaagtggtaaattaaaaattcaaggtagatcaaaacaagatttaatcaaagagttgga 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgcaagtggtaaattaaaaattcaaggtagatcaaaacaagatttaatcaaagagttgga 920


Query: 921 aagtggtgaaattgttggtttcgaaaattttggaactcatccaccagaggtttatcaaca 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 aagtggtgaaattgttggtttcgaaaattttggaactcatccaccagaggtttatcaaca 980


Query: 981 tcttttctntttatcaattttagatattacaaaagaaagaattgataatttaaggtaatc 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tcttttctntttatcaattttagatattacaaaagaaagaattgataatttaaggtaatc 1040


Query: 1041 aattaacaaaaagaaaatntgaacatcaatcaatttcatcttctgatccaaaatcacttt 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 aattaacaaaaagaaaatntgaacatcaatcaatttcatcttctgatccaaaatcacttt 1100


Query: 1101 ggactgctgatttacaacaattaaaagaatatttagaaaaaagtgataaagaatttcnnn 1160
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 ggactgctgatttacaacaattaaaagaatatttagaaaaaagtgataaagaatttcaaa 1160


Query: 1161 nnnnncctttaaacaacttcctcttcttcatcatttgatgtttcttcttcttctgaatct 1220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 aaaaacctttaaacaacttcctcttcttcatcatttgatgtttcttcttcttctgaatct 1220


Query: 1221 gcaaaattatcttcaactag 1240
||||||||||||||||||||
Sbjct: 1221 gcaaaattatcttcaactag 1240


Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1280 ctattttaatatttaa 1295
||||||||||||||||
Sbjct: 1280 ctattttaatatttaa 1295


>Contig-U11101-1 (Contig-U11101-1Q) /CSM_Contig/Contig-U11101-1Q.Seq.d
Length = 3124

Score = 81.8 bits (41), Expect = 2e-15
Identities = 50/53 (94%)
Strand = Plus / Plus


Query: 403 atgattatggccgatcaagatcatgatggttcacatattaaaggtttagttat 455
||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1371 atgattatgactgatcaagatcatgatggttcacatattaaaggtttaattat 1423


>Contig-U02608-1 (Contig-U02608-1Q) /CSM_Contig/Contig-U02608-1Q.Seq.d
Length = 1625

Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 1116 aacaattaaaagaatatttaga 1137
||||||||||||||||||||||
Sbjct: 302 aacaattaaaagaatatttaga 323


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,613
Number of Sequences: 6905
Number of extensions: 20613
Number of successful extensions: 2579
Number of sequences better than 10.0: 264
length of query: 1295
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1279
effective length of database: 5,564,391
effective search space: 7116856089
effective search space used: 7116856089
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12414-1 (Contig-U12414-1Q) /CSM_Contig/Contig-U12414-1Q.Seq.d
(1295 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(D82024) Dictyostelium discoideum topA gene for DNA topoisom... 1168 0.0 1
(BJ419390) Dictyostelium discoideum cDNA clone:ddv35p21, 5' ... 1168 0.0 1
(BJ437974) Dictyostelium discoideum cDNA clone:ddv35p21, 3' ... 1041 0.0 3
(EK334018) 1095467034148 Global-Ocean-Sampling_GS-31-01-01-1... 68 1e-14 4
(AY504965) Entamoeba histolytica topoisomerase II gene, comp... 84 2e-11 1
(BJ397293) Dictyostelium discoideum cDNA clone:dds45d23, 5' ... 82 6e-11 1
(BJ394687) Dictyostelium discoideum cDNA clone:dds36k04, 5' ... 82 6e-11 1
(BJ331732) Dictyostelium discoideum cDNA clone:dda36i22, 5' ... 82 6e-11 1
(DJ131571) Method for identification of useful proteins deri... 78 2e-10 2
(Z71364) S.cerevisiae chromosome XIV reading frame ORF YNL088w. 78 9e-10 1
(X89016) S.cerevisiae genes RHO2, TOP2, MKT1, END2, PMS1 AND... 78 9e-10 1
(M13814) Saccharomyces cerevisiae topoisomerase II (TOP2) ge... 78 9e-10 1
(DQ115393) Saccharomyces cerevisiae Pol1p (POL1) gene, parti... 78 9e-10 1
(AF458981) Saccharomyces cerevisiae strain YJM627, partial g... 78 9e-10 1
(AF458980) Saccharomyces cerevisiae strain YJM270, partial g... 78 9e-10 1
(AF458979) Saccharomyces cerevisiae strain YJM269, partial g... 78 9e-10 1
(AF458978) Saccharomyces cerevisiae strain YJM1129, partial ... 78 9e-10 1
(AF458977) Saccharomyces cerevisiae strain W303, partial gen... 78 9e-10 1
(AF458976) Saccharomyces cerevisiae strain SK1, partial genome. 78 9e-10 1
(AF458975) Saccharomyces cerevisiae strain YJM789, partial g... 78 9e-10 1
(AF458974) Saccharomyces cerevisiae strain YJM421, partial g... 78 9e-10 1
(AF458973) Saccharomyces cerevisiae strain YJM339, partial g... 78 9e-10 1
(AF458972) Saccharomyces cerevisiae strain YJM326, partial g... 78 9e-10 1
(AF458971) Saccharomyces cerevisiae strain YJM320, partial g... 78 9e-10 1
(AF458970) Saccharomyces cerevisiae strain YJM280, partial g... 78 9e-10 1
(AF458969) Saccharomyces cerevisiae strain S96, partial genome. 78 9e-10 1
(EA376844) Sequence 25667 from patent US 7314974. 78 9e-10 1
(DJ210473) Method for identification of useful proteins deri... 78 9e-10 1
(DJ025882) Genome-wide DNA marker of Saccharomyces cerevisiae. 78 9e-10 1
(AX829724) Sequence 444 from Patent WO03072602. 78 9e-10 1
(AX818694) Sequence 444 from Patent EP1338608. 78 9e-10 1
(AX595294) Sequence 948 from Patent EP1258494. 78 9e-10 1
(AC138524) Homo sapiens chromosome 5 clone XXyac-4X104D9, WO... 78 9e-10 1
(AY579202) Tetrahymena thermophila DNA topoisomerase type 2 ... 60 1e-09 3
(X04326) Fission yeast TOP2 gene for DNA topoisomerase II. 76 4e-09 1
(CU329671) Schizosaccharomyces pombe chromosome II. 76 4e-09 1
(EA377335) Sequence 26158 from patent US 7314974. 76 4e-09 1
(AL399576) T7 end of clone AS0AA016A05 of library AS0AA from... 70 2e-07 1
(AB049139) Issatchenkia orientalis top2 gene for type II DNA... 70 2e-07 1
(AL397578) T3 end of clone AS0AA003H03 of library AS0AA from... 70 2e-07 1
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 66 4e-07 10
(AB049140) Candida tropicalis top2 gene for type II DNA topo... 68 9e-07 1
(X79345) Plasmodium falciparum TopoII gene. 66 1e-06 3
(EL496127) F11_PFBAMHI-L-T7-PLATE2A.AB1 Blood stage Plasmodi... 66 2e-06 2
(EL496258) G01_PFBAMHI-M-T7-PLATE20A.AB1 Blood stage Plasmod... 66 2e-06 2
(EL494324) C09_PFBAMHI-MEDIUM-T7-PLATE1A.AB1 Blood stage Pla... 66 2e-06 2
(CR382123) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 66 4e-06 1
(BD001869) Method for identifying/detecting eucaryote with I... 66 4e-06 1
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 66 4e-06 1
(EL496115) F10_PFBAMHI-S-T7-PLATE6A.AB1 Blood stage Plasmodi... 66 4e-06 1
(EK213930) 1095460110055 Global-Ocean-Sampling_GS-31-01-01-1... 44 8e-06 4
(AL437799) T3 end of clone BC0AA011F05 of library BC0AA from... 58 3e-05 2
(AF013277) Bombyx mori topoisomerase II (TOPOII) mRNA, compl... 62 6e-05 1
(DY888989) CeleSEQ6446 Cunninghamella elegans pBluescript (E... 62 6e-05 1
(AB049138) Kluyveromyces marxianus top2 gene for type II DNA... 60 7e-05 2
(CR382137) Debaryomyces hansenii chromosome E of strain CBS7... 58 9e-04 1
(AB049144) Candida parapsilosis top2 gene for type II DNA to... 58 9e-04 1
(Y14559) Pisum sativum mRNA for topoisomerase II. 56 0.002 3
(ER302871) 1092343718363 Global-Ocean-Sampling_GS-34-01-01-1... 52 0.005 2
(EL506748) B09_PF-SAU3A-T3-M-P1.AB1 Blood stage Plasmodium f... 50 0.009 2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 38 0.011 21
(AB049145) Pichia guilliermondii top2 gene for type II DNA t... 46 0.013 2
(CR380956) Candida glabrata strain CBS138 chromosome J compl... 54 0.014 1
(AB010644) Candida glabrata Top2 gene for TopoisomeraseII, c... 54 0.014 1
(DE335024) Bombyx mori genomic DNA, BAC clone:BET_017_C12. 54 0.014 1
(AI649350) uk30g02.x1 Sugano mouse kidney mkia Mus musculus ... 54 0.014 1
(BJ351213) Dictyostelium discoideum cDNA clone:dda42n11, 3' ... 54 0.014 1
(EK484128) 1095469536250 Global-Ocean-Sampling_GS-32-01-01-1... 38 0.014 3
(AM631920) Entamoeba dispar GSS, clone dispar77d12.p1k. 28 0.040 5
(AE017308) Mycoplasma mobile 163K complete genome. 38 0.042 16
(AB096067) Microsporum canis top2 gene for DNA topoisomerase... 40 0.052 3
(AY169238) Nicotiana tabacum DNA topoisomerase II mRNA, comp... 52 0.054 1
(AF546127) Fusarium tricinctum isolate 7 topoisomerase II (T... 52 0.054 1
(AB049141) Candida tropicalis top2 gene for type II DNA topo... 52 0.054 1
(AL416492) T3 end of clone AX0AA014H10 of library AX0AA from... 52 0.054 1
(DA494189) Homo sapiens cDNA clone FCBBF3006391, 5' end, mRN... 52 0.054 1
(BP526968) Nicotiana tabacum cDNA, clone: BY11727, primer: M... 52 0.054 1
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 0.11 9
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.13 15
(AM639204) Entamoeba dispar GSS, clone dispar60f03.q1k. 50 0.21 1
(AM627026) Entamoeba dispar GSS, clone dispar19b07.q1k. 50 0.21 1
(CU736099) Phaeodactylum tricornutum mRNA 5-prime sequence f... 50 0.21 1
(DQ088147) Mycoplasma hyopneumoniae F7.2C P146 adhesin like-... 42 0.23 3
(CJ451890) Macaca fascicularis mRNA, clone: QflA-17521, 5' e... 38 0.25 2
(AQ934959) CpG2341B CpIOWAgDNA1 Cryptosporidium parvum genom... 40 0.26 2
(CT030672) Platynereis dumerilii bac CH305_229K15, WORKING D... 40 0.44 5
(AL935257) Lactobacillus plantarum strain WCFS1 complete gen... 34 0.45 2
(AB172290) Macaca fascicularis brain cDNA, clone: QflA-17521. 38 0.50 2
(CU181911) Zebrafish DNA sequence from clone CH73-220M18 in ... 42 0.55 3
(AR549952) Sequence 5083 from patent US 6747137. 40 0.59 2
(EK381472) 1095469463331 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.60 2
(AL354707) Human DNA sequence from clone RP11-390F4 on chrom... 38 0.75 4
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 0.78 21
(DX582489) MUGQ_CH252P051G11T7_AV1024_090 CHORI-252 Vervet M... 36 0.78 2
(EK208071) 1095460086199 Global-Ocean-Sampling_GS-31-01-01-1... 32 0.79 4
(AC146664) Medicago truncatula chromosome 6 clone mth2-10e20... 38 0.82 6
(BH964377) odj09d11.b1 B.oleracea002 Brassica oleracea genom... 46 0.83 2
(AC215790) MACACA MULATTA BAC clone CH250-101F19 from chromo... 48 0.84 1
(AB024036) Arabidopsis thaliana genomic DNA, chromosome 3, P... 48 0.84 1
(AM910995) Plasmodium knowlesi strain H chromosome 13, compl... 48 0.84 1

>(D82024) Dictyostelium discoideum topA gene for DNA topoisomerase II,
complete cds.
Length = 5789

Score = 1168 bits (589), Expect = 0.0
Identities = 589/589 (100%)
Strand = Plus / Plus


Query: 1 agtaaaatcattgaacgtgttgcaggttgggcattaatgaaacaaaaagcagatttaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2440 agtaaaatcattgaacgtgttgcaggttgggcattaatgaaacaaaaagcagatttaatt 2499


Query: 61 cattcaacaagtggtagacaatcaaaaaccacattgattaaatcgatttccaaattggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2500 cattcaacaagtggtagacaatcaaaaaccacattgattaaatcgatttccaaattggat 2559


Query: 121 gatgcaaattgggcaggtggattaaaatcaaaggaatgtacattgattataactgaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2560 gatgcaaattgggcaggtggattaaaatcaaaggaatgtacattgattataactgaaggt 2619


Query: 181 gattctgcaaaatcattagcattggcaggtttaagtgtagttggtcgtaattcatatggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2620 gattctgcaaaatcattagcattggcaggtttaagtgtagttggtcgtaattcatatggt 2679


Query: 241 gttttcccattacgtggtaagctattgaatgtacgtgatgtcgcttcaaaacaattatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 gttttcccattacgtggtaagctattgaatgtacgtgatgtcgcttcaaaacaattatta 2739


Query: 301 tccaatgaagaaattaataatcttaccaccattttgggtttatctcataaaaattcctat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 tccaatgaagaaattaataatcttaccaccattttgggtttatctcataaaaattcctat 2799


Query: 361 gataccgatgaaagtatggaagatttacgttatggtagagttatgattatggccgatcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 gataccgatgaaagtatggaagatttacgttatggtagagttatgattatggccgatcaa 2859


Query: 421 gatcatgatggttcacatattaaaggtttagttatgaatttcattcactacttttggcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 gatcatgatggttcacatattaaaggtttagttatgaatttcattcactacttttggcca 2919


Query: 481 aatcttttgaaacgtggtttccttgtagaatttgttacaccaatcataaaagcaactaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 aatcttttgaaacgtggtttccttgtagaatttgttacaccaatcataaaagcaactaaa 2979


Query: 541 agttcaactcaaaagaaatctttctttaccattaaagactatgaaaaat 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 agttcaactcaaaagaaatctttctttaccattaaagactatgaaaaat 3028

Score = 408 bits (206), Expect(5) = 0.0
Identities = 210/212 (99%)
Strand = Plus / Plus


Query: 621 aagatttaactgaaaatgagttaataaagctantcaagttatcagcttctcttaatttcc 680
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4121 aagatttaactgaaaatgagttaataaagctattcaagttatcagcttctcttaatttcc 4180


Query: 681 atttaacatgtttcgatgaaaattcaaaaattcaaaaattagaatctgttgaagaaatca 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 atttaacatgtttcgatgaaaattcaaaaattcaaaaattagaatctgttgaagaaatca 4240


Query: 741 ttgatcaattctataaagttcgtttacaattctatggaaaacgtagagaatncctcttga 800
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4241 ttgatcaattctataaagttcgtttacaattctatggaaaacgtagagaatacctcttga 4300


Query: 801 aatcattggataatcaaattaaacgtttaaca 832
||||||||||||||||||||||||||||||||
Sbjct: 4301 aatcattggataatcaaattaaacgtttaaca 4332

Score = 377 bits (190), Expect(5) = 0.0
Identities = 192/193 (99%)
Strand = Plus / Plus


Query: 841 atacaattccttgaagttattgcaagtggtaaattaaaaattcaaggtagatcaaaacaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4339 atacaattccttgaagttattgcaagtggtaaattaaaaattcaaggtagatcaaaacaa 4398


Query: 901 gatttaatcaaagagttggaaagtggtgaaattgttggtttcgaaaattttggaactcat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4399 gatttaatcaaagagttggaaagtggtgaaattgttggtttcgaaaattttggaactcat 4458


Query: 961 ccaccagaggtttatcaacatcttttctntttatcaattttagatattacaaaagaaaga 1020
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4459 ccaccagaggtttatcaacatcttttctctttatcaattttagatattacaaaagaaaga 4518


Query: 1021 attgataatttaa 1033
|||||||||||||
Sbjct: 4519 attgataatttaa 4531

Score = 236 bits (119), Expect(5) = 0.0
Identities = 121/122 (99%)
Strand = Plus / Plus


Query: 1036 taatcaattaacaaaaagaaaatntgaacatcaatcaatttcatcttctgatccaaaatc 1095
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4533 taatcaattaacaaaaagaaaatctgaacatcaatcaatttcatcttctgatccaaaatc 4592


Query: 1096 actttggactgctgatttacaacaattaaaagaatatttagaaaaaagtgataaagaatt 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4593 actttggactgctgatttacaacaattaaaagaatatttagaaaaaagtgataaagaatt 4652


Query: 1156 tc 1157
||
Sbjct: 4653 tc 4654

Score = 131 bits (66), Expect(5) = 0.0
Identities = 66/66 (100%)
Strand = Plus / Plus


Query: 1175 aacttcctcttcttcatcatttgatgtttcttcttcttctgaatctgcaaaattatcttc 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4671 aacttcctcttcttcatcatttgatgtttcttcttcttctgaatctgcaaaattatcttc 4730


Query: 1235 aactag 1240
||||||
Sbjct: 4731 aactag 4736

Score = 32.2 bits (16), Expect(5) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1280 ctattttaatatttaa 1295
||||||||||||||||
Sbjct: 4776 ctattttaatatttaa 4791

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,601,615,524
Number of extensions: 105092105
Number of successful extensions: 10520206
Number of sequences better than 10.0: 258
Length of query: 1295
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1271
Effective length of database: 97,308,875,965
Effective search space: 123679581351515
Effective search space used: 123679581351515
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12414-1 (Contig-U12414-1Q) /CSM_Contig/Contig-U12414-1Q.Seq.d
(1295 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AF087160_1(AF087160|pid:none) Homo sapiens DNA topoisomerase II ... 230 1e-58
(Q64511) RecName: Full=DNA topoisomerase 2-beta; EC=5.9... 230 1e-58
A39242(S26730;A39242;S10710;S33970;S30191;S41641;S30190)DNA topo... 230 1e-58
BC156330_1(BC156330|pid:none) Synthetic construct Homo sapiens c... 230 1e-58
(Q64399) RecName: Full=DNA topoisomerase 2-beta; EC=5.9... 230 1e-58
(Q02880) RecName: Full=DNA topoisomerase 2-beta; EC=5.9... 230 1e-58
AK296510_1(AK296510|pid:none) Homo sapiens cDNA FLJ55300 partial... 229 1e-58
BC121350_1(BC121350|pid:none) Xenopus tropicalis hypothetical pr... 229 2e-58
CR857392_1(CR857392|pid:none) Pongo abelii mRNA; cDNA DKFZp469C0... 228 5e-58
BC044276_1(BC044276|pid:none) Xenopus laevis hypothetical protei... 227 6e-58
AY319766_1(AY319766|pid:none) Physarum polycephalum DNA-topoisom... 226 2e-57
(Q23670) RecName: Full=Probable DNA topoisomerase 2; EC... 224 4e-57
(P15348) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 224 7e-57
BT010240_1(BT010240|pid:none) Drosophila melanogaster RE49802 fu... 224 7e-57
CR954213_11(CR954213|pid:none) Ostreococcus tauri strain OTTH059... 223 9e-57
CP001326_108(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 222 2e-56
(O46374) RecName: Full=DNA topoisomerase 2-alpha; EC=5.... 221 3e-56
J04088_1(J04088|pid:none) Human DNA topoisomerase II (top2) mRNA... 221 3e-56
AJ011741_1(AJ011741|pid:none) Homo sapiens TOP2 alpha gene, exon... 221 3e-56
A40493(A40493;A41278)DNA topoisomerase (ATP-hydrolyzing) (EC 5.9... 221 3e-56
(O16140) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 220 8e-56
BC086970_1(BC086970|pid:none) Danio rerio topoisomerase (DNA) II... 220 1e-55
AL591067_8(AL591067|pid:none) Mouse DNA sequence from clone RP23... 220 1e-55
Y16594_1(Y16594|pid:none) Cricetulus longicaudatus mRNA for DNA ... 218 3e-55
JN0598(JN0598;S32012) DNA topoisomerase (ATP-hydrolyzing) (EC 5.... 218 4e-55
(P41516) RecName: Full=DNA topoisomerase 2-alpha; EC=5.... 218 4e-55
AF285155_1(AF285155|pid:none) Gallus gallus topoisomerase II alp... 218 4e-55
(Q55BP5) RecName: Full=Probable DNA topoisomerase 2; EC... 217 6e-55
FN357492_10(FN357492|pid:none) Schistosoma mansoni genome sequen... 217 6e-55
AY169238_1(AY169238|pid:none) Nicotiana tabacum DNA topoisomeras... 215 2e-54
AB205137_1(AB205137|pid:none) Scutellaria baicalensis TopII mRNA... 214 4e-54
EU430630_1(EU430630|pid:none) Pleurotus tuber-regium topoisomera... 214 5e-54
AL590444_34(AL590444|pid:none) chromosome IV of strain GB-M1 of ... 214 5e-54
EU430639_1(EU430639|pid:none) Pleurotus flabellatus topoisomeras... 214 5e-54
AP004778_25(AP004778|pid:none) Oryza sativa Japonica Group genom... 213 9e-54
DQ679485_1(DQ679485|pid:none) Pleurotus ostreatus DNA topoisomer... 211 4e-53
EU430626_1(EU430626|pid:none) Pleurotus pulmonarius topoisomeras... 211 5e-53
(P30182) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 210 8e-53
EU430634_1(EU430634|pid:none) Pleurotus salmoneostramineus topoi... 210 1e-52
EU430625_1(EU430625|pid:none) Pleurotus abalonus topoisomerase I... 209 1e-52
EU430629_1(EU430629|pid:none) Pleurotus eryngii var. ferulae top... 209 2e-52
EU430636_1(EU430636|pid:none) Pleurotus nebrodensis topoisomeras... 207 5e-52
AE017341_358(AE017341|pid:none) Cryptococcus neoformans var. neo... 205 3e-51
AE014187_314(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 205 3e-51
(P41001) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 205 3e-51
AM910995_159(AM910995|pid:none) Plasmodium knowlesi strain H chr... 205 3e-51
AB113358_1(AB113358|pid:none) Coprinopsis cinerea topII mRNA for... 203 1e-50
EU430627_1(EU430627|pid:none) Sarcomyxa serotina topoisomerase I... 203 1e-50
EU430635_1(EU430635|pid:none) Pleurotus cornucopiae topoisomeras... 202 2e-50
EU430628_1(EU430628|pid:none) Pleurotus citrinopileatus topoisom... 198 3e-49
AY504965_1(AY504965|pid:none) Entamoeba histolytica topoisomeras... 196 2e-48
X04326_1(X04326|pid:none) Fission yeast TOP2 gene for DNA topois... 196 2e-48
AE016818_749(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 186 2e-45
(O93794) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 185 4e-45
S44861(S44861)DNA topoisomerase II - Caenorhabditis elegans 184 8e-45
(P34534) RecName: Full=Putative DNA topoisomerase 2, mitochondri... 184 8e-45
FN392321_327(FN392321|pid:none) Pichia pastoris GS115 chromosome... 183 1e-44
CR382123_598(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 182 2e-44
DQ887563_1(DQ887563|pid:none) Trypanosoma congolense topoisomera... 182 2e-44
AM502246_239(AM502246|pid:none) Leishmania infantum chromosome 28. 182 2e-44
AF458973_3(AF458973|pid:none) Saccharomyces cerevisiae strain YJ... 181 7e-44
AF458978_3(AF458978|pid:none) Saccharomyces cerevisiae strain YJ... 181 7e-44
AF458970_3(AF458970|pid:none) Saccharomyces cerevisiae strain YJ... 181 7e-44
AB049138_1(AB049138|pid:none) Kluyveromyces marxianus top2 gene ... 181 7e-44
AF458981_3(AF458981|pid:none) Saccharomyces cerevisiae strain YJ... 181 7e-44
AF458975_3(AF458975|pid:none) Saccharomyces cerevisiae strain YJ... 181 7e-44
AB110277_1(AB110277|pid:none) Arthroderma persicolor top2 gene f... 180 9e-44
AB110276_1(AB110276|pid:none) Arthroderma fulvum top2 gene for D... 180 9e-44
AB110284_1(AB110284|pid:none) Arthroderma benhamiae top2 gene fo... 180 9e-44
AB110273_1(AB110273|pid:none) Arthroderma obtusum top2 gene for ... 180 9e-44
AB110279_1(AB110279|pid:none) Trichophyton quinckeanum top2 gene... 180 9e-44
AB078352_1(AB078352|pid:none) Aspergillus niger TOP 2 gene for D... 180 9e-44
AB110285_1(AB110285|pid:none) Arthroderma benhamiae top2 gene fo... 180 9e-44
AB110275_1(AB110275|pid:none) Arthroderma gypseum top2 gene for ... 180 9e-44
AB096067_1(AB096067|pid:none) Microsporum canis top2 gene for DN... 180 9e-44
AB110274_1(AB110274|pid:none) Arthroderma incurvatum top2 gene f... 180 9e-44
CR382130_963(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 180 1e-43
AB110280_1(AB110280|pid:none) Arthroderma simii top2 gene for DN... 179 1e-43
AB110282_1(AB110282|pid:none) Trichophyton tonsurans top2 gene f... 179 2e-43
AB096065_1(AB096065|pid:none) Trichophyton interdigitale top2 ge... 179 2e-43
(Q9Y8G8) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 178 3e-43
AB078349_1(AB078349|pid:none) Aspergillus candidus TOP 2 gene fo... 178 4e-43
AB078354_1(AB078354|pid:none) Penicillium citrinum TOP 2 gene fo... 177 6e-43
AP007174_298(AP007174|pid:none) Aspergillus oryzae RIB40 genomic... 177 6e-43
CU928175_641(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 177 1e-42
PDBN(1BJT) MOL_ID: 1;MOL_ID: 1; MOLECULE: TOPOISOMERASE II; MOLE... 177 1e-42
M13814_1(M13814|pid:none) Saccharomyces cerevisiae topoisomerase... 177 1e-42
AB096064_1(AB096064|pid:none) Trichophyton rubrum top2 gene for ... 177 1e-42
AB014886_1(AB014886|pid:none) Emericella nidulans TOP2 gene for ... 175 4e-42
AB049142_1(AB049142|pid:none) Candida dubliniensis top2 gene for... 174 8e-42
AB049146_1(AB049146|pid:none) Clavispora lusitaniae top2 gene fo... 173 1e-41
DQ491002_781(DQ491002|pid:none) Paramecium bursaria Chlorella vi... 173 1e-41
DQ491003_706(DQ491003|pid:none) Paramecium bursaria Chlorella vi... 173 1e-41
AB049140_1(AB049140|pid:none) Candida tropicalis top2 gene for t... 172 2e-41
(Q5UQE6) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 172 3e-41
AB049141_1(AB049141|pid:none) Candida tropicalis top2 gene for t... 171 4e-41
AB049143_1(AB049143|pid:none) Candida parapsilosis top2 gene for... 171 5e-41
AY278365_1(AY278365|pid:none) Giardia intestinalis topoisomerase... 171 7e-41
EF101928_551(EF101928|pid:none) Acanthocystis turfacea Chlorella... 169 2e-40
AB049144_1(AB049144|pid:none) Candida parapsilosis top2 gene for... 168 3e-40
AF546127_1(AF546127|pid:none) Fusarium tricinctum isolate 7 topo... 168 4e-40
CU633897_142(CU633897|pid:none) Podospora anserina genomic DNA c... 167 1e-39
AM167520_1(AM167520|pid:none) Malus x domestica transposon gene ... 167 1e-39
AF546128_1(AF546128|pid:none) Gibberella zeae isolate 9 topoisom... 164 5e-39
DQ491001_546(DQ491001|pid:none) Paramecium bursaria chlorella vi... 163 1e-38
AY751524_1(AY751524|pid:none) Chlorella virus Marburg 1 topoisom... 163 1e-38
DQ890022_549(DQ890022|pid:none) Paramecium bursaria Chlorella vi... 161 4e-38
AJ577091_1(AJ577091|pid:none) Leishmania panamensis partial top2... 150 7e-35
(P30190) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 139 2e-31
AY083347_1(AY083347|pid:none) Bodo saltans kinetoplast and nucle... 135 3e-30
AY185495_1(AY185495|pid:none) Blastocrithidia culicis type II to... 133 1e-29
(P27570) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 133 1e-29
AY004225_1(AY004225|pid:none) Leishmania infantum DNA Topoisomer... 132 4e-29
AM502233_123(AM502233|pid:none) Leishmania infantum chromosome 15. 132 4e-29
AF150876_1(AF150876|pid:none) Leishmania donovani DNA topoisomer... 132 4e-29
AB034765_1(AB034765|pid:none) Bangia atropurpurea TOP2 gene for ... 121 6e-26
AK033321_1(AK033321|pid:none) Mus musculus 15 days embryo male t... 120 8e-26
AB034764_1(AB034764|pid:none) Porphyra tenera TOP2 gene for type... 120 1e-25
AY188913_1(AY188913|pid:none) Fusarium lateritium topoisomerase ... 112 3e-23
EU214574_1(EU214574|pid:none) Fusarium chlamydosporum NBAIM:236 ... 110 8e-23
EU214572_1(EU214572|pid:none) Gibberella moniliformis NBAIM:110 ... 108 4e-22
EU214581_1(EU214581|pid:none) Fusarium proliferatum NBAIM:344 to... 108 6e-22
AB050101_1(AB050101|pid:none) Porphyra dentata TOP2 gene for typ... 108 6e-22
EU214580_1(EU214580|pid:none) Fusarium udum NBAIM:138 topoisomer... 107 7e-22
AF546133_1(AF546133|pid:none) Fusarium oxysporum f. sp. melonis ... 107 7e-22
AB048184_1(AB048184|pid:none) Porphyra tenera TOP2 gene for type... 107 9e-22
AB048182_1(AB048182|pid:none) Porphyra suborbiculata TOP2 gene f... 107 9e-22
AB050102_1(AB050102|pid:none) Porphyra haitanensis TOP2 gene for... 107 1e-21
AJ890364_448(AJ890364|pid:none) Emiliania huxleyi virus 86 isola... 107 1e-21
AF546131_1(AF546131|pid:none) Gibberella fujikuroi topoisomerase... 106 2e-21
AF285158_1(AF285158|pid:none) Homo sapiens topoisomerase II alph... 104 6e-21
AF285159_1(AF285159|pid:none) Homo sapiens topoisomerase II alph... 104 6e-21
AF285157_1(AF285157|pid:none) Homo sapiens topoisomerase II alph... 104 6e-21
AK041054_1(AK041054|pid:none) Mus musculus adult male aorta and ... 101 7e-20
(P0C9C2) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 96 2e-18
(P34203) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 95 5e-18
AM712239_112(AM712239|pid:none) African swine fever virus Benin ... 94 1e-17
(Q00942) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 94 1e-17
(P0C9C0) RecName: Full=DNA topoisomerase 2; EC=5.99.1.3... 93 2e-17
AB034238_1(AB034238|pid:none) Microscilla marina gyrB gene for D... 90 2e-16
AE008691_10(AE008691|pid:none) Thermoanaerobacter tengcongensis ... 90 2e-16
AB034214_1(AB034214|pid:none) Cellulophaga lytica gyrB gene for ... 90 2e-16
AB047163_1(AB047163|pid:none) Marine CFB-group bacterium MBIC444... 90 2e-16
CP000924_10(CP000924|pid:none) Thermoanaerobacter pseudethanolic... 89 3e-16
CP001107_2208(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 89 3e-16
AM398681_632(AM398681|pid:none) Flavobacterium psychrophilum JIP... 89 5e-16
AB034217_1(AB034217|pid:none) Cellulophaga lytica gyrB gene for ... 89 5e-16
AB034213_1(AB034213|pid:none) Cellulophaga lytica gyrB gene for ... 89 5e-16
AM494475_1419(AM494475|pid:none) Orientia tsutsugamushi Boryong ... 89 5e-16
AB034216_1(AB034216|pid:none) Cellulophaga lytica gyrB gene for ... 89 5e-16
AB506793_1(AB506793|pid:none) Candidatus Amoebophilus asiaticus ... 88 6e-16
(Q89B37) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 88 6e-16
AE007869_12(AE007869|pid:none) Agrobacterium tumefaciens str. C5... 88 8e-16
CP001349_5630(CP001349|pid:none) Methylobacterium nodulans ORS 2... 88 8e-16
AE008917_1822(AE008917|pid:none) Brucella melitensis 16M chromos... 87 1e-15
AE014291_123(AE014291|pid:none) Brucella suis 1330 chromosome I,... 87 1e-15
AB047160_1(AB047160|pid:none) Marine CFB-group bacterium MBIC444... 87 1e-15
CP000908_2541(CP000908|pid:none) Methylobacterium extorquens PA1... 87 1e-15
CP000872_122(CP000872|pid:none) Brucella canis ATCC 23365 chromo... 87 1e-15
AB047175_1(AB047175|pid:none) Marine CFB-group bacterium MBIC446... 87 1e-15
CP000911_123(CP000911|pid:none) Brucella suis ATCC 23445 chromos... 87 1e-15
AE015928_3428(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 87 1e-15
CP000943_5063(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 87 1e-15
CP001001_316(CP001001|pid:none) Methylobacterium radiotolerans J... 87 1e-15
CP001612_687(CP001612|pid:none) Rickettsia africae ESF-5, comple... 87 1e-15
AB047172_1(AB047172|pid:none) Marine CFB-group bacterium MBIC445... 87 1e-15
CP000394_684(CP000394|pid:none) Granulibacter bethesdensis CGDNI... 87 1e-15
(Q92H87) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 87 1e-15
CP000633_12(CP000633|pid:none) Agrobacterium vitis S4 chromosome... 87 1e-15
AB047182_1(AB047182|pid:none) Marine CFB-group bacterium MBIC447... 87 2e-15
CP001029_2474(CP001029|pid:none) Methylobacterium populi BJ001, ... 87 2e-15
AB047174_1(AB047174|pid:none) Marine CFB-group bacterium MBIC446... 87 2e-15
CP001104_1171(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 86 2e-15
CP000766_921(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 86 2e-15
AB015031_1(AB015031|pid:none) Cytophaga fermentans gyrB gene for... 86 2e-15
CP000927_156(CP000927|pid:none) Caulobacter sp. K31, complete ge... 86 2e-15
CP000679_5(CP000679|pid:none) Caldicellulosiruptor saccharolytic... 86 2e-15
CP000721_6(CP000721|pid:none) Clostridium beijerinckii NCIMB 805... 86 2e-15
AM180355_5(AM180355|pid:none) Clostridium difficile 630 complete... 86 3e-15
BX897699_41(BX897699|pid:none) Bartonella henselae strain Housto... 86 3e-15
CU459003_1332(CU459003|pid:none) Magnetospirillum gryphiswaldens... 86 3e-15
AB047191_1(AB047191|pid:none) Marine CFB-group bacterium MBIC148... 86 3e-15
(Q9ZCX2) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 86 3e-15
CP000248_3296(CP000248|pid:none) Novosphingobium aromaticivorans... 86 3e-15
CU179680_740(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo... 86 3e-15
CP000524_1254(CP000524|pid:none) Bartonella bacilliformis KC583,... 86 4e-15
CP000264_4(CP000264|pid:none) Jannaschia sp. CCS1, complete geno... 86 4e-15
AB047185_1(AB047185|pid:none) Marine CFB-group bacterium MBIC447... 86 4e-15
CP000758_138(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188... 86 4e-15
AB047184_1(AB047184|pid:none) Marine CFB-group bacterium MBIC447... 86 4e-15
CP001189_2129(CP001189|pid:none) Gluconacetobacter diazotrophicu... 86 4e-15
CU207366_2712(CU207366|pid:none) Gramella forsetii KT0803 comple... 86 4e-15
AB017713_1(AB017713|pid:none) Bacteroides fragilis gyrB gene for... 86 4e-15
AB048185_1(AB048185|pid:none) Bacteroides fragilis gyrB gene for... 86 4e-15
AB047155_1(AB047155|pid:none) Marine CFB-group bacterium MBIC520... 86 4e-15
AB034224_1(AB034224|pid:none) Flavobacterium uglinosum gyrB gene... 85 5e-15
AL591688_12(AL591688|pid:none) Sinorhizobium meliloti 1021 compl... 85 5e-15
(Q1RHT8) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 85 5e-15
CP001503_3(CP001503|pid:none) Burkholderia glumae BGR1 chromosom... 85 5e-15
CP001393_6(CP001393|pid:none) Anaerocellum thermophilum DSM 6725... 85 5e-15
CP001349_3178(CP001349|pid:none) Methylobacterium nodulans ORS 2... 85 5e-15
CP000553_2081(CP000553|pid:none) Prochlorococcus marinus str. NA... 85 5e-15
AB047186_1(AB047186|pid:none) Marine CFB-group bacterium MBIC447... 85 5e-15
CP000685_2244(CP000685|pid:none) Flavobacterium johnsoniae UW101... 85 7e-15
AB506783_1(AB506783|pid:none) Cardinium endosymbiont of Oligonyc... 85 7e-15
CP000628_1847(CP000628|pid:none) Agrobacterium radiobacter K84 c... 85 7e-15
AB032578_1(AB032578|pid:none) Flexibacter flexilis gyrB gene for... 85 7e-15
BA000040_4355(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 85 7e-15
AB047179_1(AB047179|pid:none) Marine CFB-group bacterium MBIC447... 85 7e-15
CP001230_1509(CP001230|pid:none) Persephonella marina EX-H1, com... 85 7e-15
CP000777_8(CP000777|pid:none) Leptospira biflexa serovar Patoc s... 85 7e-15
AB034229_1(AB034229|pid:none) Tenacibaculum maritimum gyrB gene ... 85 7e-15
AB034228_1(AB034228|pid:none) Tenacibaculum maritimum gyrB gene ... 85 7e-15
CP001104_5(CP001104|pid:none) Eubacterium eligens ATCC 27750, co... 84 9e-15
AY996880_1(AY996880|pid:none) Burkholderia cenocepacia strain FC... 84 9e-15
AY996881_1(AY996881|pid:none) Burkholderia cenocepacia strain FC... 84 9e-15
(Q4UKX5) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 84 9e-15
CP000709_492(CP000709|pid:none) Brucella ovis ATCC 25840 chromos... 84 9e-15
AC3594(AC3594) DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3)... 84 9e-15
CP000158_967(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 84 9e-15
AB047165_1(AB047165|pid:none) Marine CFB-group bacterium MBIC445... 84 9e-15
AY996909_1(AY996909|pid:none) Burkholderia cenocepacia strain FC... 84 9e-15
AB032585_1(AB032585|pid:none) Tenacibaculum mesophilum gyrB gene... 84 9e-15
AB015029_1(AB015029|pid:none) Bacteroides vulgatus gyrB gene for... 84 9e-15
AY996878_1(AY996878|pid:none) Burkholderia cenocepacia strain FC... 84 9e-15
AY996884_1(AY996884|pid:none) Burkholderia cenocepacia strain LM... 84 9e-15
AB071141_1(AB071141|pid:none) Cellulophaga baltica gyrB gene for... 84 9e-15
AY996904_1(AY996904|pid:none) Burkholderia cenocepacia strain Cr... 84 9e-15
AY996879_1(AY996879|pid:none) Burkholderia cenocepacia strain FC... 84 9e-15
AM398681_514(AM398681|pid:none) Flavobacterium psychrophilum JIP... 84 9e-15
CP000409_385(CP000409|pid:none) Rickettsia canadensis str. McKie... 84 9e-15
AY996911_1(AY996911|pid:none) Burkholderia stabilis strain FCF40... 84 1e-14
EU240565_1(EU240565|pid:none) Burkholderia stabilis strain LMG 1... 84 1e-14
AE009442_5(AE009442|pid:none) Xylella fastidiosa Temecula1, comp... 84 1e-14
DQ124428_1(DQ124428|pid:none) Burkholderia stabilis strain LMG14... 84 1e-14
AL954747_3(AL954747|pid:none) Nitrosomonas europaea ATCC 19718, ... 84 1e-14
AB047189_1(AB047189|pid:none) Marine CFB-group bacterium MBIC148... 84 1e-14
AB047188_1(AB047188|pid:none) Marine CFB-group bacterium MBIC148... 84 1e-14
CP000509_2910(CP000509|pid:none) Nocardioides sp. JS614, complet... 84 1e-14
CP000697_29(CP000697|pid:none) Acidiphilium cryptum JF-5, comple... 84 1e-14
AY996890_1(AY996890|pid:none) Burkholderia cenocepacia strain FC... 84 1e-14
AY987933_1(AY987933|pid:none) Burkholderia pyrrocinia strain ATC... 84 1e-14
AB015028_1(AB015028|pid:none) Empedobacter brevis gyrB gene for ... 84 1e-14
EU240568_1(EU240568|pid:none) Burkholderia ambifaria strain LMG ... 84 1e-14
AY987927_1(AY987927|pid:none) Burkholderia anthina strain LMG 16... 84 1e-14
AB047162_1(AB047162|pid:none) Marine CFB-group bacterium MBIC444... 84 1e-14
CP000885_292(CP000885|pid:none) Clostridium phytofermentans ISDg... 84 1e-14
AE003849_5(AE003849|pid:none) Xylella fastidiosa 9a5c, complete ... 84 1e-14
EU240559_1(EU240559|pid:none) Burkholderia cenocepacia strain LM... 84 1e-14
AY996886_1(AY996886|pid:none) Burkholderia cenocepacia strain MV... 84 1e-14
AY996891_1(AY996891|pid:none) Burkholderia cenocepacia strain FC... 84 1e-14
AY996887_1(AY996887|pid:none) Burkholderia cenocepacia strain FC... 84 1e-14
CP000151_3(CP000151|pid:none) Burkholderia sp. 383 chromosome 1,... 84 1e-14
CP000958_3(CP000958|pid:none) Burkholderia cenocepacia MC0-3 chr... 84 1e-14
CP000494_8(CP000494|pid:none) Bradyrhizobium sp. BTAi1, complete... 84 1e-14
AB034219_1(AB034219|pid:none) Persicobacter diffluens gyrB gene ... 84 1e-14
AY996889_1(AY996889|pid:none) Burkholderia cenocepacia strain FC... 84 1e-14
CP000378_2538(CP000378|pid:none) Burkholderia cenocepacia AU 105... 84 1e-14
AY996866_1(AY996866|pid:none) Burkholderia cepacia strain FCF1 G... 84 1e-14
EU240570_1(EU240570|pid:none) Burkholderia anthina strain LMG 20... 84 1e-14
EU240561_1(EU240561|pid:none) Burkholderia cenocepacia strain LM... 84 1e-14
AB015036_1(AB015036|pid:none) Sphingobacterium spiritivorum gyrB... 84 1e-14
AY996864_1(AY996864|pid:none) Burkholderia cepacia strain Vr46 G... 84 1e-14
AY996901_1(AY996901|pid:none) Burkholderia cenocepacia strain LM... 84 1e-14
AY996867_1(AY996867|pid:none) Burkholderia cepacia strain LMG122... 84 1e-14
CP001101_15(CP001101|pid:none) Chlorobium phaeobacteroides BS1, ... 84 1e-14
AE009951_590(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 84 1e-14
AY996894_1(AY996894|pid:none) Burkholderia cenocepacia strain FC... 84 1e-14
AY996895_1(AY996895|pid:none) Burkholderia cenocepacia strain FC... 84 1e-14
AM260525_39(AM260525|pid:none) Bartonella tribocorum CIP 105476 ... 84 1e-14
EU240566_1(EU240566|pid:none) Burkholderia stabilis strain LMG 1... 84 1e-14
EU240560_1(EU240560|pid:none) Burkholderia cenocepacia strain LM... 84 1e-14
AP006840_6(AP006840|pid:none) Symbiobacterium thermophilum IAM 1... 84 1e-14
AY996888_1(AY996888|pid:none) Burkholderia cenocepacia strain FC... 84 1e-14
AB034232_1(AB034232|pid:none) Tenacibaculum ovolyticum gyrB gene... 83 2e-14
AB047158_1(AB047158|pid:none) Marine CFB-group bacterium MBIC444... 83 2e-14
AY996897_1(AY996897|pid:none) Burkholderia cenocepacia strain FC... 83 2e-14
AB048186_1(AB048186|pid:none) Chitinophaga pinensis gyrB gene fo... 83 2e-14
CP001087_2(CP001087|pid:none) Desulfobacterium autotrophicum HRM... 83 2e-14
AB034230_1(AB034230|pid:none) Tenacibaculum ovolyticum gyrB gene... 83 2e-14
AB032581_1(AB032581|pid:none) Flexibacter filiformis gyrB gene f... 83 2e-14
CP000738_3184(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 83 2e-14
AB047178_1(AB047178|pid:none) Marine CFB-group bacterium MBIC447... 83 2e-14
AB034212_1(AB034212|pid:none) Marine bacterium MBIC1357 gyrB gen... 83 2e-14
AB034234_1(AB034234|pid:none) Flectobacillus major gyrB gene for... 83 2e-14
CP000449_14(CP000449|pid:none) Maricaulis maris MCS10, complete ... 83 2e-14
AB032586_1(AB032586|pid:none) Tenacibaculum amylolyticum gyrB ge... 83 2e-14
CP001097_15(CP001097|pid:none) Chlorobium limicola DSM 245, comp... 83 2e-14
AF008210_11(AF008210|pid:none) Buchnera aphidicola genomic fragm... 83 2e-14
AB034225_1(AB034225|pid:none) Flavobacterium aquatile gyrB gene ... 83 2e-14
AB034233_1(AB034233|pid:none) Flexibacter litoralis gyrB gene fo... 83 2e-14
AB032584_1(AB032584|pid:none) Flexibacter canadensis gyrB gene f... 83 2e-14
CP000141_2615(CP000141|pid:none) Carboxydothermus hydrogenoforma... 83 2e-14
(P29435) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 83 2e-14
AE010300_4191(AE010300|pid:none) Leptospira interrogans serovar ... 83 2e-14
CP000463_5(CP000463|pid:none) Rhodopseudomonas palustris BisA53,... 83 2e-14
CP001196_525(CP001196|pid:none) Oligotropha carboxidovorans OM5 ... 83 2e-14
(P94604) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 83 2e-14
CP000492_29(CP000492|pid:none) Chlorobium phaeobacteroides DSM 2... 83 2e-14
AY231457_1(AY231457|pid:none) Mesoplasma syrphidae DNA gyrase su... 83 2e-14
CP001132_1654(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 83 2e-14
CP000356_2951(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 83 2e-14
AB048188_1(AB048188|pid:none) Flavobacterium ferrugineum gyrB ge... 83 2e-14
T46555(T46555) DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3)... 83 2e-14
AY987923_1(AY987923|pid:none) Burkholderia dolosa strain LMG 189... 82 3e-14
EU240564_1(EU240564|pid:none) Burkholderia vietnamiensis strain ... 82 3e-14
AY996914_1(AY996914|pid:none) Burkholderia vietnamiensis strain ... 82 3e-14
CP000158_547(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 82 3e-14
CP000825_1903(CP000825|pid:none) Prochlorococcus marinus str. MI... 82 3e-14
AY996898_1(AY996898|pid:none) Burkholderia cenocepacia strain FC... 82 3e-14
AY996913_1(AY996913|pid:none) Burkholderia vietnamiensis strain ... 82 3e-14
CP001096_4(CP001096|pid:none) Rhodopseudomonas palustris TIE-1, ... 82 3e-14
CP001191_3905(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 82 3e-14
CP000096_10(CP000096|pid:none) Pelodictyon luteolum DSM 273, com... 82 3e-14
CP001184_496(CP001184|pid:none) Ureaplasma urealyticum serovar 1... 82 3e-14
CP000614_3(CP000614|pid:none) Burkholderia vietnamiensis G4 chro... 82 3e-14
BX572593_4(BX572593|pid:none) Rhodopseudomonas palustris CGA009 ... 82 3e-14
EU240563_1(EU240563|pid:none) Burkholderia vietnamiensis strain ... 82 3e-14
AB032577_1(AB032577|pid:none) Capnocytophaga ochracea gyrB gene ... 82 3e-14
CP000853_6(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, co... 82 4e-14
CP000089_3(CP000089|pid:none) Dechloromonas aromatica RCB, compl... 82 4e-14
AP008229_4(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MAFF... 82 4e-14
AF010496_49(AF010496|pid:none) Rhodobacter capsulatus strain SB1... 82 4e-14
CP000139_1195(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 82 4e-14
CP000020_12(CP000020|pid:none) Vibrio fischeri ES114 chromosome ... 82 4e-14
DQ143923_1(DQ143923|pid:none) Psychrobacter submarinus strain KM... 82 4e-14
AB047166_1(AB047166|pid:none) Marine CFB-group bacterium MBIC445... 82 4e-14
CP001132_4(CP001132|pid:none) Acidithiobacillus ferrooxidans ATC... 82 4e-14
AE008923_4(AE008923|pid:none) Xanthomonas axonopodis pv. citri s... 82 4e-14
AY996900_1(AY996900|pid:none) Burkholderia cenocepacia strain FC... 82 4e-14
BA000012_3999(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 82 4e-14
CP001139_12(CP001139|pid:none) Vibrio fischeri MJ11 chromosome I... 82 4e-14
CP000319_4(CP000319|pid:none) Nitrobacter hamburgensis X14, comp... 82 4e-14
CP000908_3078(CP000908|pid:none) Methylobacterium extorquens PA1... 82 4e-14
CP000780_1627(CP000780|pid:none) Candidatus Methanoregula boonei... 82 4e-14
AY360319_1(AY360319|pid:none) Mesoplasma seiffertii DNA gyrase s... 82 4e-14
CP000016_16(CP000016|pid:none) Candidatus Blochmannia pennsylvan... 82 4e-14
AM039952_4(AM039952|pid:none) Xanthomonas campestris pv. vesicat... 82 4e-14
AE008922_4(AE008922|pid:none) Xanthomonas campestris pv. campest... 82 4e-14
CP000967_4(CP000967|pid:none) Xanthomonas oryzae pv. oryzae PXO9... 82 4e-14
DQ143921_1(DQ143921|pid:none) Psychrobacter faecalis strain Iso-... 82 6e-14
CP001099_14(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, c... 82 6e-14
AB047164_1(AB047164|pid:none) Marine CFB-group bacterium MBIC444... 82 6e-14
AB071142_1(AB071142|pid:none) Cyclobacterium marinum gyrB gene f... 82 6e-14
BA000012_708(BA000012|pid:none) Mesorhizobium loti MAFF303099 DN... 82 6e-14
BA000040_823(BA000040|pid:none) Bradyrhizobium japonicum USDA 11... 82 6e-14
CP001020_4(CP001020|pid:none) Coxiella burnetii CbuK_Q154, compl... 82 6e-14
DQ228439_3(DQ228439|pid:none) Nitrosomonas sp. OZK11 DNA replica... 82 6e-14
CP000733_4(CP000733|pid:none) Coxiella burnetii Dugway 5J108-111... 82 6e-14
AE016828_5(AE016828|pid:none) Coxiella burnetii RSA 493, complet... 82 6e-14
AB015035_1(AB015035|pid:none) Pedobacter heparinus gyrB gene for... 82 6e-14
(Q9KVX3) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 82 6e-14
DQ228435_3(DQ228435|pid:none) Nitrosovibrio sp. FJI82 DNA replic... 82 6e-14
CP000115_4(CP000115|pid:none) Nitrobacter winogradskyi Nb-255, c... 82 6e-14
AB458223_1(AB458223|pid:none) Psychrobacter pulmonis gyrB gene f... 82 6e-14
CP000890_5(CP000890|pid:none) Coxiella burnetii RSA 331, complet... 82 6e-14
CP000555_3(CP000555|pid:none) Methylibium petroleiphilum PM1, co... 82 6e-14
CP000878_1762(CP000878|pid:none) Prochlorococcus marinus str. MI... 82 6e-14
CP001074_13(CP001074|pid:none) Rhizobium etli CIAT 652, complete... 81 7e-14
AL591688_1438(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 81 7e-14
CP000672_1001(CP000672|pid:none) Haemophilus influenzae PittGG, ... 81 7e-14
(O87545) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 81 7e-14
DQ143915_1(DQ143915|pid:none) Psychrobacter proteolyticus strain... 81 7e-14
CP000246_6(CP000246|pid:none) Clostridium perfringens ATCC 13124... 81 7e-14
CP000774_3232(CP000774|pid:none) Parvibaculum lavamentivorans DS... 81 7e-14
DQ143918_1(DQ143918|pid:none) Psychrobacter jeotgali strain YKJ-... 81 7e-14
CP000477_1365(CP000477|pid:none) Methanosaeta thermophila PT, co... 81 7e-14
CP001185_887(CP001185|pid:none) Thermosipho africanus TCF52B, co... 81 7e-14
CP000283_4(CP000283|pid:none) Rhodopseudomonas palustris BisB5, ... 81 7e-14
AB201278_1(AB201278|pid:none) Listonella anguillarum gyrB gene ... 81 7e-14
DQ143928_1(DQ143928|pid:none) Psychrobacter arcticus DNA gyrase ... 81 7e-14
BA000016_6(BA000016|pid:none) Clostridium perfringens str. 13 DN... 81 7e-14
DQ143916_1(DQ143916|pid:none) Psychrobacter fozii strain LMG 212... 81 7e-14
CP000671_21(CP000671|pid:none) Haemophilus influenzae PittEE, co... 81 7e-14
CP000157_2346(CP000157|pid:none) Erythrobacter litoralis HTCC259... 81 7e-14
EU680781_1(EU680781|pid:none) Vibrio alginolyticus strain ATCC 1... 81 7e-14
AP009384_1009(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 81 7e-14
DQ863261_1(DQ863261|pid:none) Spiroplasma alleghenense strain PL... 81 7e-14
CP000323_6(CP000323|pid:none) Psychrobacter cryohalolentis K5, c... 81 7e-14
AB506782_1(AB506782|pid:none) Cardinium endosymbiont of Eotetran... 81 7e-14
CP000082_4(CP000082|pid:none) Psychrobacter arcticus 273-4, comp... 81 7e-14
CP000312_6(CP000312|pid:none) Clostridium perfringens SM101, com... 81 7e-14
DQ143926_1(DQ143926|pid:none) Psychrobacter glacincola strain AC... 81 7e-14
CP000301_5(CP000301|pid:none) Rhodopseudomonas palustris BisB18,... 81 9e-14
CP001391_116(CP001391|pid:none) Wolbachia sp. wRi, complete geno... 81 9e-14
AJ938182_5(AJ938182|pid:none) Staphylococcus aureus RF122 comple... 81 9e-14
(Q9FAX2) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 81 9e-14
CP000738_1055(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 81 9e-14
CP000830_745(CP000830|pid:none) Dinoroseobacter shibae DFL 12, c... 81 9e-14
EU680782_1(EU680782|pid:none) Vibrio campbellii strain ATCC 3386... 81 9e-14
AE017196_98(AE017196|pid:none) Wolbachia endosymbiont of Drosoph... 81 9e-14
CP001108_15(CP001108|pid:none) Prosthecochloris aestuarii DSM 27... 81 9e-14
AE016795_940(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 81 9e-14
AB047176_1(AB047176|pid:none) Marine CFB-group bacterium MBIC446... 81 9e-14
AM286690_4(AM286690|pid:none) Alcanivorax borkumensis SK2, compl... 81 9e-14
DQ143927_1(DQ143927|pid:none) Psychrobacter immobilis strain ATC... 81 9e-14
AB047192_1(AB047192|pid:none) Marine CFB-group bacterium MBIC448... 81 9e-14
AB047177_1(AB047177|pid:none) Marine CFB-group bacterium MBIC446... 81 9e-14
DQ514610_1(DQ514610|pid:none) Spiroplasma phoeniceum strain P198... 81 9e-14
EU672845_1(EU672845|pid:none) Vibrio harveyi strain ATCC 33842 D... 81 9e-14
AJ965256_4(AJ965256|pid:none) Dehalococcoides sp. CBDB1 complete... 81 9e-14
DQ514609_1(DQ514609|pid:none) Spiroplasma phoeniceum strain P40 ... 81 9e-14
CP000449_1324(CP000449|pid:none) Maricaulis maris MCS10, complet... 81 9e-14
AM902716_3(AM902716|pid:none) Bordetella petrii strain DSM 12804... 80 1e-13
EU014292_1(EU014292|pid:none) Spiroplasma sp. CRAYFISH DNA topoi... 80 1e-13
CP000108_29(CP000108|pid:none) Chlorobium chlorochromatii CaD3, ... 80 1e-13
BX571857_5(BX571857|pid:none) Staphylococcus aureus strain MSSA4... 80 1e-13
CP001279_3(CP001279|pid:none) Nautilia profundicola AmH, complet... 80 1e-13
CP000111_1879(CP000111|pid:none) Prochlorococcus marinus str. MI... 80 1e-13
CP001103_6(CP001103|pid:none) Alteromonas macleodii 'Deep ecotyp... 80 1e-13
CP001173_448(CP001173|pid:none) Helicobacter pylori G27, complet... 80 1e-13
CP001096_2711(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 80 1e-13
CP000746_130(CP000746|pid:none) Actinobacillus succinogenes 130Z... 80 1e-13
AE017261_1414(AE017261|pid:none) Picrophilus torridus DSM 9790, ... 80 1e-13
AY345991_1(AY345991|pid:none) Entomoplasma melaleucae DNA gyrase... 80 1e-13
AB015025_1(AB015025|pid:none) Chryseobacterium indologenes gyrB ... 80 1e-13
(Q6GKU0) RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; 80 1e-13
CP000113_259(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 80 1e-13
DQ094158_1(DQ094158|pid:none) Acholeplasma multilocale strain AT... 80 1e-13
(P0A0K7) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 80 1e-13
AE015927_29(AE015927|pid:none) Clostridium tetani E88, complete ... 80 1e-13
CP000703_5(CP000703|pid:none) Staphylococcus aureus subsp. aureu... 80 1e-13
CP001001_985(CP001001|pid:none) Methylobacterium radiotolerans J... 80 1e-13
CP000241_478(CP000241|pid:none) Helicobacter pylori HPAG1, compl... 80 1e-13
EU014291_1(EU014291|pid:none) Spiroplasma sp. CRAB DNA topoisome... 80 1e-13
BX572601_30(BX572601|pid:none) Rhodopseudomonas palustris CGA009... 80 1e-13
(Q5HJZ1) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 80 1e-13
CP001217_504(CP001217|pid:none) Helicobacter pylori P12, complet... 80 1e-13
AE016827_2249(AE016827|pid:none) Mannheimia succiniciproducens M... 80 1e-13
BX571856_5(BX571856|pid:none) Staphylococcus aureus subsp. aureu... 80 1e-13
DQ143920_1(DQ143920|pid:none) Psychrobacter okhotskensis strain ... 80 2e-13
AE015924_1455(AE015924|pid:none) Porphyromonas gingivalis W83, c... 80 2e-13
AY142800_1(AY142800|pid:none) Heliobacillus mobilis DNA gyrase s... 80 2e-13
CP000103_3(CP000103|pid:none) Nitrosospira multiformis ATCC 2519... 80 2e-13
DQ124425_1(DQ124425|pid:none) Burkholderia multivorans strain LM... 80 2e-13
(O67137) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 80 2e-13
CP001634_347(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co... 80 2e-13
BX908798_1075(BX908798|pid:none) Parachlamydia-related symbiont ... 80 2e-13
AP009385_67(AP009385|pid:none) Burkholderia multivorans ATCC 176... 80 2e-13
AY996869_1(AY996869|pid:none) Burkholderia multivorans strain FC... 80 2e-13
CP000489_413(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 80 2e-13
AB490498_1(AB490498|pid:none) Psychrobacter sp. JCM 15603 gyrB g... 80 2e-13
DQ124426_1(DQ124426|pid:none) Burkholderia multivorans strain LM... 80 2e-13
BA000021_16(BA000021|pid:none) Wigglesworthia glossinidia endosy... 80 2e-13
CP001189_4(CP001189|pid:none) Gluconacetobacter diazotrophicus P... 80 2e-13
CP000140_3456(CP000140|pid:none) Parabacteroides distasonis ATCC... 80 2e-13
AB197124_6(AB197124|pid:none) Burkholderia multivorans genes for... 80 2e-13
AY217008_1(AY217008|pid:none) Sphingomonas elodea strain ATCC 31... 80 2e-13
DQ372711_23(DQ372711|pid:none) Azoarcus communis strain MUL2G9 h... 80 2e-13
AY996875_1(AY996875|pid:none) Burkholderia multivorans strain FC... 80 2e-13
AP010904_3(AP010904|pid:none) Desulfovibrio magneticus RS-1 DNA,... 80 2e-13
AM889285_1774(AM889285|pid:none) Gluconacetobacter diazotrophicu... 80 2e-13
CU207366_1461(CU207366|pid:none) Gramella forsetii KT0803 comple... 80 2e-13
CP000448_5(CP000448|pid:none) Syntrophomonas wolfei subsp. wolfe... 80 2e-13
AM743169_5(AM743169|pid:none) Stenotrophomonas maltophilia K279a... 80 2e-13
CP000435_90(CP000435|pid:none) Synechococcus sp. CC9311, complet... 80 2e-13
BX248583_17(BX248583|pid:none) Blochmannia floridanus complete g... 80 2e-13
AP006628_496(AP006628|pid:none) Onion yellows phytoplasma OY-M D... 80 2e-13
AJ508044_1(AJ508044|pid:none) Haemophilus influenzae partial gyr... 80 2e-13
AC122169_15(AC122169|pid:none) Medicago truncatula clone mth2-9m... 80 2e-13
BX571965_73(BX571965|pid:none) Burkholderia pseudomallei strain ... 80 2e-13
CP000250_5(CP000250|pid:none) Rhodopseudomonas palustris HaA2, c... 80 2e-13
AB032582_1(AB032582|pid:none) Flexibacter sancti gyrB gene for D... 80 2e-13
CP000557_1624(CP000557|pid:none) Geobacillus thermodenitrificans... 80 2e-13
CP001052_3(CP001052|pid:none) Burkholderia phytofirmans PsJN chr... 80 2e-13
CP000133_2151(CP000133|pid:none) Rhizobium etli CFN 42, complete... 80 2e-13
AE017243_108(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp... 80 2e-13
L35044_2(L35044|pid:none) Mycoplasma gallisepticum topoisomerase... 80 2e-13
AP006841_4533(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 80 2e-13
CP001016_1198(CP001016|pid:none) Beijerinckia indica subsp. indi... 80 2e-13
AE017332_268(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co... 80 2e-13
CP000301_2796(CP000301|pid:none) Rhodopseudomonas palustris BisB... 80 2e-13
CP000270_3(CP000270|pid:none) Burkholderia xenovorans LB400 chro... 80 2e-13
AE017126_1793(AE017126|pid:none) Prochlorococcus marinus subsp. ... 79 3e-13
CP000383_1390(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 79 3e-13
DQ493642_1(DQ493642|pid:none) Spiroplasma mirum strain CT-48 DNA... 79 3e-13
EF613024_1(EF613024|pid:none) Uncultured bacterium clone YSK-G1 ... 79 3e-13
AY729883_1(AY729883|pid:none) Candidatus Regiella insecticola gy... 79 3e-13
AE006470_2233(AE006470|pid:none) Chlorobium tepidum TLS, complet... 79 3e-13
AB047167_1(AB047167|pid:none) Marine CFB-group bacterium MBIC445... 79 3e-13
AI2463(AI2463) DNA gyrase B chain [imported] - Nostoc sp. (strai... 79 3e-13
(P50028) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 79 3e-13
(Q9I7C2) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 79 3e-13
(Q9LCK1) RecName: Full=DNA gyrase subunit B; EC=5.99.1.... 79 3e-13
AE008692_1583(AE008692|pid:none) Zymomonas mobilis subsp. mobili... 79 3e-13
CP000644_4(CP000644|pid:none) Aeromonas salmonicida subsp. salmo... 79 3e-13
AB015026_1(AB015026|pid:none) Bergeyella zoohelcum gyrB gene for... 79 3e-13
AE017340_4(AE017340|pid:none) Idiomarina loihiensis L2TR, comple... 79 3e-13
AE017244_112(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, c... 79 3e-13
CP001157_4(CP001157|pid:none) Azotobacter vinelandii DJ, complet... 79 4e-13
CP000352_3(CP000352|pid:none) Ralstonia metallidurans CH34, comp... 79 4e-13
CP001339_4(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, com... 79 4e-13
EF619606_1(EF619606|pid:none) Streptococcus dysgalactiae subsp. ... 79 4e-13
AE009949_772(AE009949|pid:none) Streptococcus pyogenes MGAS8232,... 79 4e-13
AB015024_1(AB015024|pid:none) Elizabethkingia meningoseptica gyr... 79 4e-13
AM295250_2458(AM295250|pid:none) Staphylococcus carnosus subsp. ... 79 4e-13
CP000230_4(CP000230|pid:none) Rhodospirillum rubrum ATCC 11170, ... 79 4e-13
CP000633_1631(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 79 4e-13
CP000687_780(CP000687|pid:none) Actinobacillus pleuropneumoniae ... 79 4e-13
CP000302_4(CP000302|pid:none) Shewanella denitrificans OS217, co... 79 4e-13

>AF087160_1(AF087160|pid:none) Homo sapiens DNA topoisomerase II
beta (TOP2B) gene, exons 35 and 36 and partial cds.
Length = 1598

Score = 230 bits (586), Expect = 1e-58
Identities = 112/195 (57%), Positives = 148/195 (75%)
Frame = +1

Query: 7 IIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLIITEGDS 186
I+E + W K + L S K + IK I KLDDAN AGG S ECTLI+TEGDS
Sbjct: 400 IVESILNWVKFKAQTQLNKKCSS--VKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDS 457

Query: 187 AKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHKNSYDT 366
AKSLA++GL V+GR+ YGVFPLRGK+LNVR+ + KQ++ N EINN+ I+GL +K SYD
Sbjct: 458 AKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDD 517

Query: 367 DESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKATKSS 546
ES++ LRYG++MIM DQD DGSHIKGL++NFIH+ WP+LLK GFL EF+TPI+KA+K+
Sbjct: 518 AESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNK 577

Query: 547 TQKKSFFTIKDYEKW 591
Q+ SF++I ++++W
Sbjct: 578 -QELSFYSIPEFDEW 591

Score = 41.6 bits (96), Expect = 0.063
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +2

Query: 641 LIKLXKLSASLNFH-LTCFDENSKIQKLESVEEIIDQFYKVRLQFYGKRREXLLKSLDNQ 817
L K+ KL +L + + FD ++K E+V++I+ +F+ +RL +YG R+E L+ L +
Sbjct: 978 LHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAE 1037

Query: 818 IKRLTDYRYNSLKLLQ 865
+L + L+ +Q
Sbjct: 1038 STKLNNQARFILEKIQ 1053

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,706,968,312
Number of extensions: 35121351
Number of successful extensions: 90348
Number of sequences better than 10.0: 2977
Number of HSP's gapped: 88326
Number of HSP's successfully gapped: 3071
Length of query: 431
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 300
Effective length of database: 627,191,635
Effective search space: 188157490500
Effective search space used: 188157490500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.82 gvh: 0.39 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for Contig-U12414-1 is cyt

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0