Contig-U12405-1
Contig ID Contig-U12405-1
Contig update 2002.12.18
Contig sequence
>Contig-U12405-1 (Contig-U12405-1Q) /CSM_Contig/Contig-U12405-1Q.Seq.d
TTAATGTAATTTCTGAAAAAATGGATTTGCTAGGTCCAATATTTAAAAAT
ATTGAAAAGTATCCATCATCATCATCACCAGTTATAACTCAAACTAATAC
TGAGATCGGTTGGAAATTAACAATTAGTGATCCAATTAATGGTTTTAAAA
GTGGTTATATTGTAGTTAAAGGTGCAATTGATGGTTCAAATTATAATTTT
ACTATTAATCCAACAAATAATATATTCGAACAAGTATATACAGTTGGTAT
TAATTTATCAACTCCTTGTATTTCTCAAGACTATATTATTTCTGATGTAT
TACTATTTGATACTGAAAATAATAATTCAACATTTACATTATTTAATGAT
GACAAATTCATAGGATTATCACTTTTTAATCCATTTATGAATTATCTCGG
TGATCCATCAATCAATAAAATATCAGTTACTTGTCCAAATGAGGTATATG
ATCCAACACCAGTTGTAATTAAAAATTTTGTTTGTGGTAATAAAACAGTT
GATGTAGNNNNNNNNN----------NNNNNNNNNNTTGAAAAATGGATT
TACAGTGATTTAACTAATAATACATCTATGTATATAACTAATATTACAAG
AGATGACATTACAATATCACAAANTAAATGTAACTATTCAATGGTTTGAT
AAGGCTACAAATATATCATTCGCTGGTAATAATTTACAAATGAACCCATC
AACTTCAAAATATACAATTTCAATCAATTCATATCCATTTAGAAATCGAT
TAAGTAAATTAGAATTATTAATGTCAGCAACATTTGAATCATCTAGCAGT
GACGATATTTGTTCATCTCAACAATTTGGAAATAATACAAACGAAGATTA
TTTAAAAATTCAAATTGGAGATCATTCAATGTATGCAAGATTCTTAAAAA
GAGGTATTGCAGATGGACTAATTACCCCAATCGATAATAGAGTTATTGAA
AATAATCAAACTCAATCAAATTCTGAATCATTCTCATCTTCATATATTGG
TATTATAATACCACAGTATAAATCTAAAGTTATAGTAGATCCTGATTTCT
CAGTATTATTAGATCATTCATCAAGTTCATCTTCATCACCAAATTCAATT
TGTTCTAAAAAATCCAGTGGATTAAGTGGTGGTGAAATTGCTGGTATTGT
AATAGGTAGTGTCACATTTGCTGCAGTAGTAATATTCTCACTTTCCTTTC
ATTTTGTAAAAAGGAATCAAGAAAATAAATTTAATAGATCCATTACAAAT
AAATGGAAAAAGTAAAATAATAAATAACTAATAAAGAATGTATTATATTT
ATCATCTTTGGTAAATTTAATAAA

Gap gap included
Contig length 1314
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 2
Link to clone list U12405
List of clone(s)

est1=VHB678F,1,507
est2=VHB678Z,508,1296
Translated Amino Acid sequence
NVISEKMDLLGPIFKNIEKYPSSSSPVITQTNTEIGWKLTISDPINGFKSGYIVVKGAID
GSNYNFTINPTNNIFEQVYTVGINLSTPCISQDYIISDVLLFDTENNNSTFTLFNDDKFI
GLSLFNPFMNYLGDPSINKISVTCPNEVYDPTPVVIKNFVCGNKTVDVXXX---

---XXXXEKWIYSDLTNNTSMYITNITRDDITISQXKCNYSMV**gykyiirw**ftnep
infkiynfnqfisi*ksik*iriinvsni*ii*q*rylfistiwk*ykrrlfknsnwrsf
nvckilkkrycrwtnypnr**sy*k*snsikf*iilifiywyynttv*i*sysrs*flsi
irsfikfifitkfnlf*kiqwikww*ncwycnr*chiccssniltflsfckkesrk*i**
ihyk*mekvk**itnkeciifiifgkfnk


Translated Amino Acid sequence (All Frames)
Frame A:
lm*flkkwic*vqylkilksihhhhhql*lklilrsvgn*qlviqlmvlkvvil*lkvql
mvqiiillliqqiiysnkyiqlvliyqllvflktilflmyyylilkiiiqhlhylmmtns
*dyhflihl*iisvihqsikyqllvqmrymiqhql*lkilfvvikqlm*xxx---

---XXXXEKWIYSDLTNNTSMYITNITRDDITISQXKCNYSMV**gykyiirw**ftnep
infkiynfnqfisi*ksik*iriinvsni*ii*q*rylfistiwk*ykrrlfknsnwrsf
nvckilkkrycrwtnypnr**sy*k*snsikf*iilifiywyynttv*i*sysrs*flsi
irsfikfifitkfnlf*kiqwikww*ncwycnr*chiccssniltflsfckkesrk*i**
ihyk*mekvk**itnkeciifiifgkfnk

Frame B:
*cnf*kngfarsni*ky*kvsiiiitsynsn*y*drleinn**sn*wf*kwlycs*rcn*
wfkl*fyy*snk*yirtsiyswy*finslyfsrlyyf*citi*y*k**fniyii***qih
riitf*siyelsr*sinq*nisylsk*gi*sntscn*kfclw**ns*cxxx---

---xxxlkngftvi*liihlci*lilqemtlqyhkxnvtiqwfdkatnisfagnnlqmnp
stskytisinsypfrnrlsklellmsatfessssddicssqqfgnntnedylkiqigdhs
myarflkrgiadglitpidnrviennqtqsnsesfsssyigiiipqykskvivdpdfsvl
ldhssssssspnsicskkssglsggeiagivigsvtfaavvifslsfhfvkrnqenkfnr
sitnkwkk*nnk*liknvlylsslvnli

Frame C:
NVISEKMDLLGPIFKNIEKYPSSSSPVITQTNTEIGWKLTISDPINGFKSGYIVVKGAID
GSNYNFTINPTNNIFEQVYTVGINLSTPCISQDYIISDVLLFDTENNNSTFTLFNDDKFI
GLSLFNPFMNYLGDPSINKISVTCPNEVYDPTPVVIKNFVCGNKTVDVXXX---

---xxx*kmdlq*fn**yiyvyn*yykr*hynitx*m*lfnglirlqiyhslviiyk*th
qlqniqfqsihihleid*vn*ny*cqqhlnhlavtifvhlnnleiiqtkii*kfkleiiq
cmqds*kevlqmd*lpqsiiellkiiklnqilnhshlhilvl*yhsinlkl**ilisqyy
*iihqvhlhhqiqfvlknpvd*vvvkllvl**vvshllq**yshfpfil*kgikkinlid
plqingkskiinn**rmyyiyhlw*i**

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12405-1 (Contig-U12405-1Q)
/CSM_Contig/Contig-U12405-1Q.Seq.d
(1324 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12405-1 (Contig-U12405-1Q) /CSM_Contig/Conti... 1346 0.0
Contig-U13656-1 (Contig-U13656-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U11520-1 (Contig-U11520-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U05231-1 (Contig-U05231-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U11253-1 (Contig-U11253-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U06400-1 (Contig-U06400-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U02000-1 (Contig-U02000-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U01649-1 (Contig-U01649-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U14547-1 (Contig-U14547-1Q) /CSM_Contig/Conti... 38 0.024

>Contig-U12405-1 (Contig-U12405-1Q) /CSM_Contig/Contig-U12405-1Q.Seq.d
Length = 1324

Score = 1346 bits (679), Expect = 0.0
Identities = 682/682 (100%)
Strand = Plus / Plus


Query: 537 ttgaaaaatggatttacagtgatttaactaataatacatctatgtatataactaatatta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttgaaaaatggatttacagtgatttaactaataatacatctatgtatataactaatatta 596


Query: 597 caagagatgacattacaatatcacaaantaaatgtaactattcaatggtttgataaggct 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 caagagatgacattacaatatcacaaantaaatgtaactattcaatggtttgataaggct 656


Query: 657 acaaatatatcattcgctggtaataatttacaaatgaacccatcaacttcaaaatataca 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 acaaatatatcattcgctggtaataatttacaaatgaacccatcaacttcaaaatataca 716


Query: 717 atttcaatcaattcatatccatttagaaatcgattaagtaaattagaattattaatgtca 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atttcaatcaattcatatccatttagaaatcgattaagtaaattagaattattaatgtca 776


Query: 777 gcaacatttgaatcatctagcagtgacgatatttgttcatctcaacaatttggaaataat 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gcaacatttgaatcatctagcagtgacgatatttgttcatctcaacaatttggaaataat 836


Query: 837 acaaacgaagattatttaaaaattcaaattggagatcattcaatgtatgcaagattctta 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 acaaacgaagattatttaaaaattcaaattggagatcattcaatgtatgcaagattctta 896


Query: 897 aaaagaggtattgcagatggactaattaccccaatcgataatagagttattgaaaataat 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 aaaagaggtattgcagatggactaattaccccaatcgataatagagttattgaaaataat 956


Query: 957 caaactcaatcaaattctgaatcattctcatcttcatatattggtattataataccacag 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 caaactcaatcaaattctgaatcattctcatcttcatatattggtattataataccacag 1016


Query: 1017 tataaatctaaagttatagtagatcctgatttctcagtattattagatcattcatcaagt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 tataaatctaaagttatagtagatcctgatttctcagtattattagatcattcatcaagt 1076


Query: 1077 tcatcttcatcaccaaattcaatttgttctaaaaaatccagtggattaagtggtggtgaa 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 tcatcttcatcaccaaattcaatttgttctaaaaaatccagtggattaagtggtggtgaa 1136


Query: 1137 attgctggtattgtaataggtagtgtcacatttgctgcagtagtaatattctcactttcc 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 attgctggtattgtaataggtagtgtcacatttgctgcagtagtaatattctcactttcc 1196


Query: 1197 tttcattttgtaaaaaggaatc 1218
||||||||||||||||||||||
Sbjct: 1197 tttcattttgtaaaaaggaatc 1218


Score = 1005 bits (507), Expect = 0.0
Identities = 507/507 (100%)
Strand = Plus / Plus


Query: 1 ttaatgtaatttctgaaaaaatggatttgctaggtccaatatttaaaaatattgaaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaatgtaatttctgaaaaaatggatttgctaggtccaatatttaaaaatattgaaaagt 60


Query: 61 atccatcatcatcatcaccagttataactcaaactaatactgagatcggttggaaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atccatcatcatcatcaccagttataactcaaactaatactgagatcggttggaaattaa 120


Query: 121 caattagtgatccaattaatggttttaaaagtggttatattgtagttaaaggtgcaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caattagtgatccaattaatggttttaaaagtggttatattgtagttaaaggtgcaattg 180


Query: 181 atggttcaaattataattttactattaatccaacaaataatatattcgaacaagtatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atggttcaaattataattttactattaatccaacaaataatatattcgaacaagtatata 240


Query: 241 cagttggtattaatttatcaactccttgtatttctcaagactatattatttctgatgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagttggtattaatttatcaactccttgtatttctcaagactatattatttctgatgtat 300


Query: 301 tactatttgatactgaaaataataattcaacatttacattatttaatgatgacaaattca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tactatttgatactgaaaataataattcaacatttacattatttaatgatgacaaattca 360


Query: 361 taggattatcactttttaatccatttatgaattatctcggtgatccatcaatcaataaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taggattatcactttttaatccatttatgaattatctcggtgatccatcaatcaataaaa 420


Query: 421 tatcagttacttgtccaaatgaggtatatgatccaacaccagttgtaattaaaaattttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatcagttacttgtccaaatgaggtatatgatccaacaccagttgtaattaaaaattttg 480


Query: 481 tttgtggtaataaaacagttgatgtag 507
|||||||||||||||||||||||||||
Sbjct: 481 tttgtggtaataaaacagttgatgtag 507


Score = 93.7 bits (47), Expect = 5e-19
Identities = 47/47 (100%)
Strand = Plus / Plus


Query: 1278 ctaataaagaatgtattatatttatcatctttggtaaatttaataaa 1324
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 ctaataaagaatgtattatatttatcatctttggtaaatttaataaa 1324


Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 998 tggtattataatacca 1013
||||||||||||||||
Sbjct: 1013 tggtattataatacca 998


>Contig-U13656-1 (Contig-U13656-1Q) /CSM_Contig/Contig-U13656-1Q.Seq.d
Length = 466

Score = 50.1 bits (25), Expect = 6e-06
Identities = 73/89 (82%)
Strand = Plus / Plus


Query: 108 ggttggaaattaacaattagtgatccaattaatggttttaaaagtggttatattgtagtt 167
||||||||||| ||||| ||||||||||||||||||| | || | ||||| |||||
Sbjct: 187 ggttggaaatttacaatagatgatccaattaatggttttgattatgctgatattatagtt 246


Query: 168 aaaggtgcaattgatggttcaaattataa 196
| ||||| ||| ||| |||||| ||||||
Sbjct: 247 agaggtgaaatggatagttcaacttataa 275


Score = 32.2 bits (16), Expect = 1.5
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 36 ccaatatttaaaaatattgaaaag 59
|||||||||| ||||||||||||
Sbjct: 142 ccaatatttagtaatattgaaaag 165


Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1138 ttgctggtattgtaa 1152
|||||||||||||||
Sbjct: 19 ttgctggtattgtaa 5


>Contig-U11520-1 (Contig-U11520-1Q) /CSM_Contig/Contig-U11520-1Q.Seq.d
Length = 1065

Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus


Query: 1036 tagatcctgatttctcagtattattagatca 1066
||||||| ||||||||||| |||||||||||
Sbjct: 835 tagatccagatttctcagttttattagatca 865


Score = 32.2 bits (16), Expect = 1.5
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 763 aattattaatgtcagcaaca 782
||||| ||||||||||||||
Sbjct: 553 aattagtaatgtcagcaaca 572


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,807
Number of Sequences: 6905
Number of extensions: 27807
Number of successful extensions: 4256
Number of sequences better than 10.0: 472
length of query: 1324
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1308
effective length of database: 5,564,391
effective search space: 7278223428
effective search space used: 7278223428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12405-1 (Contig-U12405-1Q) /CSM_Contig/Contig-U12405-1Q.Seq.d
(1324 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ437637) Dictyostelium discoideum cDNA clone:ddv34k20, 3' ... 1322 0.0 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 1152 0.0 2
(BJ419053) Dictyostelium discoideum cDNA clone:ddv34k20, 5' ... 1003 0.0 1
(BJ376333) Dictyostelium discoideum cDNA clone:ddc28i04, 3' ... 38 3e-07 5
(BJ404456) Dictyostelium discoideum cDNA clone:dds28h14, 3' ... 38 4e-07 5
(BJ357120) Dictyostelium discoideum cDNA clone:dda62d14, 3' ... 46 9e-07 4
(AF466305) Dictyostelium discoideum ABC transporter AbcB2 (a... 56 4e-05 4
(DQ471513) Drosophila barutani strain 245 NADH dehydrogenase... 34 2e-04 5
(DQ471506) Drosophila barutani strain 178 NADH dehydrogenase... 34 2e-04 5
(DQ471504) Drosophila barutani strain 176 NADH dehydrogenase... 34 2e-04 5
(DQ471475) Drosophila barutani strain 53 NADH dehydrogenase ... 34 2e-04 5
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 38 2e-04 3
(BJ384128) Dictyostelium discoideum cDNA clone:ddc48i10, 3' ... 38 2e-04 3
(BJ381340) Dictyostelium discoideum cDNA clone:ddc41p03, 3' ... 46 4e-04 3
(BJ382175) Dictyostelium discoideum cDNA clone:ddc43k01, 3' ... 46 6e-04 3
(BJ406325) Dictyostelium discoideum cDNA clone:dds34k23, 3' ... 46 0.003 3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 0.003 14
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 40 0.005 10
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 50 0.009 18
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 38 0.009 9
(BJ421933) Dictyostelium discoideum cDNA clone:ddv44f07, 5' ... 46 0.011 2
(BJ354773) Dictyostelium discoideum cDNA clone:dda54o15, 3' ... 34 0.014 4
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 0.024 14
(DQ471485) Drosophila barutani NADH dehydrogenase subunit 2 ... 34 0.030 4
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 0.066 13
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 34 0.10 10
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 36 0.12 26
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.12 14
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.15 11
(CS468864) Sequence 55 from Patent EP1748080. 40 0.18 11
(CS419341) Sequence 55 from Patent WO2006094836. 40 0.18 11
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.18 15
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.19 16
(AL844509) Plasmodium falciparum chromosome 13. 38 0.19 16
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 36 0.22 8
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 34 0.22 8
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ... 42 0.38 13
(BF296402) 036PbE11 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 34 0.39 3
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 36 0.45 22
(AC176705) Strongylocentrotus purpuratus clone R3-3088P04, W... 42 0.54 6
(AC217723) Solanum tuberosum chromosome 1 clone RH095K20, **... 32 0.60 11
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 0.60 19
(AC224906) Bos taurus clone CH240-473I17, WORKING DRAFT SEQU... 42 0.63 6
(EV479611) Fc_nor_50G12_M13F Folsomia candida normalized cDN... 36 0.63 2
(AZ693138) ENTKS42TF Entamoeba histolytica Sheared DNA Entam... 34 0.70 3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.70 19
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 0.79 11
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 32 0.81 10
(AC006278) Plasmodium falciparum chromosome 12 clone 3D7, **... 42 0.82 9
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 36 0.85 14
(AC183641) Pan troglodytes chromosome X clone CH251-531E9 ma... 48 0.86 1
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.86 1
(AC084884) Oryza sativa chromosome 10 clone OSJNBa0031A07, c... 48 0.86 1
(EA682079) Sequence 60958 from patent US 7365185. 48 0.86 1
(EA680332) Sequence 59211 from patent US 7365185. 48 0.86 1
(AC092474) Homo sapiens chromosome X clone RP11-169L17 map p... 48 0.86 1
(EK427348) 1095516042139 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.86 1
(EK416072) 1095515465293 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.86 1
(CP000312) Clostridium perfringens SM101, complete genome. 48 0.86 1
(ER369425) 1093022169260 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.0 2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 1.1 20
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 38 1.1 12
(AE013599) Drosophila melanogaster chromosome 2R, complete s... 34 1.2 2
(AC148918) Medicago truncatula chromosome 2 clone mth2-44o11... 36 1.4 5
(AC181090) Strongylocentrotus purpuratus clone R3-3044K11, W... 42 1.4 6
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 34 1.5 15
(AU062245) Dictyostelium discoideum slug cDNA, clone SLI660. 38 1.5 2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 1.5 15
(AU285009) Dictyostelium discoideum gamete cDNA clone:FC-BT0... 38 1.6 3
(BX154542) Danio rerio genomic clone DKEY-117C12, genomic su... 34 1.7 3
(AU285003) Dictyostelium discoideum gamete cDNA clone:FC-BS2... 38 1.7 3
(AE001372) Plasmodium falciparum 3D7 chromosome 2 section 9 ... 40 1.7 3
(AC007836) Drosophila melanogaster, chromosome 2R, region 50... 34 1.7 2
(AC008306) Drosophila melanogaster, chromosome 2R, region 51... 34 1.7 2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 32 1.8 11
(AC005645) Drosophila melanogaster strain y chromosome 2 clo... 34 1.8 2
(AC005646) Drosophila melanogaster strain y chromosome 2 clo... 34 1.8 2
(CQ593675) Sequence 21433 from Patent WO0171042. 34 1.8 2
(AC014448) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 34 1.9 2
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 32 2.0 14
(BX537111) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 32 2.1 9
(AL139088) Human DNA sequence from clone RP11-129M14 on chro... 34 2.1 5
(BJ334145) Dictyostelium discoideum cDNA clone:dda45e10, 5' ... 42 2.1 2
(BI095527) ACS06-JM6.A09 Sulfur-deprived onion root library ... 38 2.2 2
(AL391988) Human DNA sequence from clone RP11-129M16 on chro... 44 2.3 8
(CA911899) PCS01623X5 Scarlet Runner Bean Suspensor Region T... 42 2.3 2
(AC048363) Homo sapiens chromosome 8 clone RP11-683D15 map 8... 34 2.3 11
(BJ334715) Dictyostelium discoideum cDNA clone:dda47e16, 5' ... 42 2.4 2
(BJ417848) Dictyostelium discoideum cDNA clone:ddv15d20, 5' ... 42 2.4 2
(AJ938182) Staphylococcus aureus RF122 complete genome. 36 2.7 22
(AY583234) Mycoplasma fermentans strain II-29/1 bacteriophag... 34 2.9 4
(CA911901) PCSC21514 Scarlet Runner Bean Suspensor Region Tr... 42 2.9 2
(BJ396154) Dictyostelium discoideum cDNA clone:dds41f18, 5' ... 42 2.9 2
(CV682190) sjs6-009_B10_sjs6-009B10-T3 SJS Schistosoma japon... 42 3.1 2
(AC096721) Homo sapiens BAC clone RP11-19C24 from 4, complet... 34 3.1 10
(CF445103) EST681448 normalized cDNA library of onion Allium... 38 3.2 2
(AP003715) Homo sapiens genomic DNA, chromosome 11q clone:RP... 34 3.4 10
(BX511120) Zebrafish DNA sequence from clone CH211-214C7 in ... 46 3.4 1
(EU335913) HIV-1 isolate 98PTRJd35 from Portugal envelope gl... 46 3.4 1
(ER469388) 1092963943222 Global-Ocean-Sampling_GS-35-01-01-1... 46 3.4 1

>(BJ437637) Dictyostelium discoideum cDNA clone:ddv34k20, 3' end,
single read.
Length = 789

Score = 1322 bits (667), Expect = 0.0
Identities = 670/670 (100%)
Strand = Plus / Minus


Query: 537 ttgaaaaatggatttacagtgatttaactaataatacatctatgtatataactaatatta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttgaaaaatggatttacagtgatttaactaataatacatctatgtatataactaatatta 730


Query: 597 caagagatgacattacaatatcacaaantaaatgtaactattcaatggtttgataaggct 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 caagagatgacattacaatatcacaaantaaatgtaactattcaatggtttgataaggct 670


Query: 657 acaaatatatcattcgctggtaataatttacaaatgaacccatcaacttcaaaatataca 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 acaaatatatcattcgctggtaataatttacaaatgaacccatcaacttcaaaatataca 610


Query: 717 atttcaatcaattcatatccatttagaaatcgattaagtaaattagaattattaatgtca 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atttcaatcaattcatatccatttagaaatcgattaagtaaattagaattattaatgtca 550


Query: 777 gcaacatttgaatcatctagcagtgacgatatttgttcatctcaacaatttggaaataat 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gcaacatttgaatcatctagcagtgacgatatttgttcatctcaacaatttggaaataat 490


Query: 837 acaaacgaagattatttaaaaattcaaattggagatcattcaatgtatgcaagattctta 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acaaacgaagattatttaaaaattcaaattggagatcattcaatgtatgcaagattctta 430


Query: 897 aaaagaggtattgcagatggactaattaccccaatcgataatagagttattgaaaataat 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaaagaggtattgcagatggactaattaccccaatcgataatagagttattgaaaataat 370


Query: 957 caaactcaatcaaattctgaatcattctcatcttcatatattggtattataataccacag 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caaactcaatcaaattctgaatcattctcatcttcatatattggtattataataccacag 310


Query: 1017 tataaatctaaagttatagtagatcctgatttctcagtattattagatcattcatcaagt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tataaatctaaagttatagtagatcctgatttctcagtattattagatcattcatcaagt 250


Query: 1077 tcatcttcatcaccaaattcaatttgttctaaaaaatccagtggattaagtggtggtgaa 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcatcttcatcaccaaattcaatttgttctaaaaaatccagtggattaagtggtggtgaa 190


Query: 1137 attgctggtattgtaataggtagtgtcacatttgctgcagtagtaatattctcactttcc 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 attgctggtattgtaataggtagtgtcacatttgctgcagtagtaatattctcactttcc 130


Query: 1197 tttcattttg 1206
||||||||||
Sbjct: 129 tttcattttg 120

Score = 77.8 bits (39), Expect = 1e-09
Identities = 39/39 (100%)
Strand = Plus / Minus


Query: 1286 gaatgtattatatttatcatctttggtaaatttaataaa 1324
|||||||||||||||||||||||||||||||||||||||
Sbjct: 40 gaatgtattatatttatcatctttggtaaatttaataaa 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,630,685,917
Number of extensions: 105136939
Number of successful extensions: 10028536
Number of sequences better than 10.0: 173
Length of query: 1324
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1300
Effective length of database: 97,308,875,965
Effective search space: 126501538754500
Effective search space used: 126501538754500
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12405-1 (Contig-U12405-1Q) /CSM_Contig/Contig-U12405-1Q.Seq.d
(1324 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso... 346 1e-95
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso... 152 5e-37
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso... 151 1e-36
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom... 133 3e-32
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom... 140 1e-31
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos... 133 9e-30
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso... 131 5e-29
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom... 125 3e-27
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso... 121 5e-26
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso... 110 9e-23
AF001315_1(AF001315|pid:none) Dictyostelium discoideum MipAp (mi... 104 8e-21
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso... 102 2e-20
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom... 102 2e-20
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ... 71 8e-11
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 53 3e-05
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso... 52 4e-05
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso... 52 5e-05
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 52 6e-05
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 50 2e-04
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso... 47 0.001
AC117075_65(AC117075|pid:none) Dictyostelium discoideum chromoso... 46 0.003
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso... 43 0.022
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso... 41 0.084
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso... 41 0.084
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 40 0.14
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso... 40 0.14
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 40 0.25
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 38 0.93
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 36 2.7
AF004355_1(AF004355|pid:none) Trichomonas vaginalis surface immu... 36 2.7
AF116276_1(AF116276|pid:none) Trichomonas vaginalis surface immu... 36 2.7
BX538353_65(BX538353|pid:none) Cryptosporidium parvum chromosome... 35 6.0
AM433831_1(AM433831|pid:none) Vitis vinifera contig VV78X228334.... 35 6.0
AF182000_1(AF182000|pid:none) Human spumaretrovirus envelope pro... 35 7.9
AP007167_406(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 35 7.9

>AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromosome 2
map 1685067-2090751 strain AX4, complete sequence.
Length = 1414

Score = 313 bits (803), Expect(2) = 1e-95
Identities = 165/207 (79%), Positives = 165/207 (79%)
Frame = +3

Query: 627 NVTIQWFDKATNISFAGNNLQMNPSTSKYTISINSYPFRNRLSKLELLMSATFEXXXXXX 806
NVTIQWFDKATNISFAGNNLQMNPSTSKYTISINSYPFRNRLSKLELLMSATFE
Sbjct: 1201 NVTIQWFDKATNISFAGNNLQMNPSTSKYTISINSYPFRNRLSKLELLMSATFESSSSDD 1260

Query: 807 XXXXQQFGNNTNEDYLKIQIGDHSMYARFLKRGIADGLITPIDNRVIENNQTQXXXXXXX 986
QQFGNNTNEDYLKIQIGDHSMYARFLKRGIADGLITPIDNRVIENNQTQ
Sbjct: 1261 ICSSQQFGNNTNEDYLKIQIGDHSMYARFLKRGIADGLITPIDNRVIENNQTQSNSESFS 1320

Query: 987 XXXXXXXXPQYKSKVIVDPDFSVLLDHXXXXXXXXXXXXXXXXXGLSGGEIAGIVIGSVT 1166
PQYKSKVIVDPDFSVLLDH GLSGGEIAGIVIGSVT
Sbjct: 1321 SSYIGIIIPQYKSKVIVDPDFSVLLDHSSSSSSSPNSICSKKSSGLSGGEIAGIVIGSVT 1380

Query: 1167 FAAVVIFSLSFHFVKRNQENKFNRSIT 1247
FAAVVIFSLSFHFVKRNQENKFNRSIT
Sbjct: 1381 FAAVVIFSLSFHFVKRNQENKFNRSIT 1407

Score = 61.2 bits (147), Expect(2) = 1e-95
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +2

Query: 539 EKWIYSDLTNNTSMYITNITRDDITISQ 622
EKWIYSDLTNNTSMYITNITRDDITISQ
Sbjct: 1172 EKWIYSDLTNNTSMYITNITRDDITISQ 1199

Score = 346 bits (887), Expect = 1e-93
Identities = 168/168 (100%), Positives = 168/168 (100%)
Frame = +3

Query: 3 NVISEKMDLLGPIFKNIEKYPSSSSPVITQTNTEIGWKLTISDPINGFKSGYIVVKGAID 182
NVISEKMDLLGPIFKNIEKYPSSSSPVITQTNTEIGWKLTISDPINGFKSGYIVVKGAID
Sbjct: 639 NVISEKMDLLGPIFKNIEKYPSSSSPVITQTNTEIGWKLTISDPINGFKSGYIVVKGAID 698

Query: 183 GSNYNFTINPTNNIFEQVYTVGINLSTPCISQDYIISDVLLFDTENNNSTFTLFNDDKFI 362
GSNYNFTINPTNNIFEQVYTVGINLSTPCISQDYIISDVLLFDTENNNSTFTLFNDDKFI
Sbjct: 699 GSNYNFTINPTNNIFEQVYTVGINLSTPCISQDYIISDVLLFDTENNNSTFTLFNDDKFI 758

Query: 363 GLSLFNPFMNYLGDPSINKISVTCPNEVYDPTPVVIKNFVCGNKTVDV 506
GLSLFNPFMNYLGDPSINKISVTCPNEVYDPTPVVIKNFVCGNKTVDV
Sbjct: 759 GLSLFNPFMNYLGDPSINKISVTCPNEVYDPTPVVIKNFVCGNKTVDV 806

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,758,295,538
Number of extensions: 35163861
Number of successful extensions: 79504
Number of sequences better than 10.0: 35
Number of HSP's gapped: 79375
Number of HSP's successfully gapped: 49
Length of query: 441
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 309
Effective length of database: 623,955,076
Effective search space: 192802118484
Effective search space used: 192802118484
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.49 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U12405-1 is cyt

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0