Contig-U12405-1 |
Contig ID |
Contig-U12405-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1314 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U12405 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.30 |
Homology vs DNA |
Query= Contig-U12405-1 (Contig-U12405-1Q) /CSM_Contig/Contig-U12405-1Q.Seq.d (1324 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ437637) Dictyostelium discoideum cDNA clone:ddv34k20, 3' ... 1322 0.0 1 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 1152 0.0 2 (BJ419053) Dictyostelium discoideum cDNA clone:ddv34k20, 5' ... 1003 0.0 1 (BJ376333) Dictyostelium discoideum cDNA clone:ddc28i04, 3' ... 38 3e-07 5 (BJ404456) Dictyostelium discoideum cDNA clone:dds28h14, 3' ... 38 4e-07 5 (BJ357120) Dictyostelium discoideum cDNA clone:dda62d14, 3' ... 46 9e-07 4 (AF466305) Dictyostelium discoideum ABC transporter AbcB2 (a... 56 4e-05 4 (DQ471513) Drosophila barutani strain 245 NADH dehydrogenase... 34 2e-04 5 (DQ471506) Drosophila barutani strain 178 NADH dehydrogenase... 34 2e-04 5 (DQ471504) Drosophila barutani strain 176 NADH dehydrogenase... 34 2e-04 5 (DQ471475) Drosophila barutani strain 53 NADH dehydrogenase ... 34 2e-04 5 (AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 38 2e-04 3 (BJ384128) Dictyostelium discoideum cDNA clone:ddc48i10, 3' ... 38 2e-04 3 (BJ381340) Dictyostelium discoideum cDNA clone:ddc41p03, 3' ... 46 4e-04 3 (BJ382175) Dictyostelium discoideum cDNA clone:ddc43k01, 3' ... 46 6e-04 3 (BJ406325) Dictyostelium discoideum cDNA clone:dds34k23, 3' ... 46 0.003 3 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 0.003 14 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 40 0.005 10 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 50 0.009 18 (AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 38 0.009 9 (BJ421933) Dictyostelium discoideum cDNA clone:ddv44f07, 5' ... 46 0.011 2 (BJ354773) Dictyostelium discoideum cDNA clone:dda54o15, 3' ... 34 0.014 4 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 0.024 14 (DQ471485) Drosophila barutani NADH dehydrogenase subunit 2 ... 34 0.030 4 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 0.066 13 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 34 0.10 10 (CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 36 0.12 26 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.12 14 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.15 11 (CS468864) Sequence 55 from Patent EP1748080. 40 0.18 11 (CS419341) Sequence 55 from Patent WO2006094836. 40 0.18 11 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.18 15 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.19 16 (AL844509) Plasmodium falciparum chromosome 13. 38 0.19 16 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 36 0.22 8 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 34 0.22 8 (AE014844) Plasmodium falciparum 3D7 chromosome 12, section ... 42 0.38 13 (BF296402) 036PbE11 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 34 0.39 3 (CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 36 0.45 22 (AC176705) Strongylocentrotus purpuratus clone R3-3088P04, W... 42 0.54 6 (AC217723) Solanum tuberosum chromosome 1 clone RH095K20, **... 32 0.60 11 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 0.60 19 (AC224906) Bos taurus clone CH240-473I17, WORKING DRAFT SEQU... 42 0.63 6 (EV479611) Fc_nor_50G12_M13F Folsomia candida normalized cDN... 36 0.63 2 (AZ693138) ENTKS42TF Entamoeba histolytica Sheared DNA Entam... 34 0.70 3 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.70 19 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 0.79 11 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 32 0.81 10 (AC006278) Plasmodium falciparum chromosome 12 clone 3D7, **... 42 0.82 9 (AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 36 0.85 14 (AC183641) Pan troglodytes chromosome X clone CH251-531E9 ma... 48 0.86 1 (AP008216) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.86 1 (AC084884) Oryza sativa chromosome 10 clone OSJNBa0031A07, c... 48 0.86 1 (EA682079) Sequence 60958 from patent US 7365185. 48 0.86 1 (EA680332) Sequence 59211 from patent US 7365185. 48 0.86 1 (AC092474) Homo sapiens chromosome X clone RP11-169L17 map p... 48 0.86 1 (EK427348) 1095516042139 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.86 1 (EK416072) 1095515465293 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.86 1 (CP000312) Clostridium perfringens SM101, complete genome. 48 0.86 1 (ER369425) 1093022169260 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.0 2 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 1.1 20 (AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 38 1.1 12 (AE013599) Drosophila melanogaster chromosome 2R, complete s... 34 1.2 2 (AC148918) Medicago truncatula chromosome 2 clone mth2-44o11... 36 1.4 5 (AC181090) Strongylocentrotus purpuratus clone R3-3044K11, W... 42 1.4 6 (AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 34 1.5 15 (AU062245) Dictyostelium discoideum slug cDNA, clone SLI660. 38 1.5 2 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 1.5 15 (AU285009) Dictyostelium discoideum gamete cDNA clone:FC-BT0... 38 1.6 3 (BX154542) Danio rerio genomic clone DKEY-117C12, genomic su... 34 1.7 3 (AU285003) Dictyostelium discoideum gamete cDNA clone:FC-BS2... 38 1.7 3 (AE001372) Plasmodium falciparum 3D7 chromosome 2 section 9 ... 40 1.7 3 (AC007836) Drosophila melanogaster, chromosome 2R, region 50... 34 1.7 2 (AC008306) Drosophila melanogaster, chromosome 2R, region 51... 34 1.7 2 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 32 1.8 11 (AC005645) Drosophila melanogaster strain y chromosome 2 clo... 34 1.8 2 (AC005646) Drosophila melanogaster strain y chromosome 2 clo... 34 1.8 2 (CQ593675) Sequence 21433 from Patent WO0171042. 34 1.8 2 (AC014448) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 34 1.9 2 (AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 32 2.0 14 (BX537111) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 32 2.1 9 (AL139088) Human DNA sequence from clone RP11-129M14 on chro... 34 2.1 5 (BJ334145) Dictyostelium discoideum cDNA clone:dda45e10, 5' ... 42 2.1 2 (BI095527) ACS06-JM6.A09 Sulfur-deprived onion root library ... 38 2.2 2 (AL391988) Human DNA sequence from clone RP11-129M16 on chro... 44 2.3 8 (CA911899) PCS01623X5 Scarlet Runner Bean Suspensor Region T... 42 2.3 2 (AC048363) Homo sapiens chromosome 8 clone RP11-683D15 map 8... 34 2.3 11 (BJ334715) Dictyostelium discoideum cDNA clone:dda47e16, 5' ... 42 2.4 2 (BJ417848) Dictyostelium discoideum cDNA clone:ddv15d20, 5' ... 42 2.4 2 (AJ938182) Staphylococcus aureus RF122 complete genome. 36 2.7 22 (AY583234) Mycoplasma fermentans strain II-29/1 bacteriophag... 34 2.9 4 (CA911901) PCSC21514 Scarlet Runner Bean Suspensor Region Tr... 42 2.9 2 (BJ396154) Dictyostelium discoideum cDNA clone:dds41f18, 5' ... 42 2.9 2 (CV682190) sjs6-009_B10_sjs6-009B10-T3 SJS Schistosoma japon... 42 3.1 2 (AC096721) Homo sapiens BAC clone RP11-19C24 from 4, complet... 34 3.1 10 (CF445103) EST681448 normalized cDNA library of onion Allium... 38 3.2 2 (AP003715) Homo sapiens genomic DNA, chromosome 11q clone:RP... 34 3.4 10 (BX511120) Zebrafish DNA sequence from clone CH211-214C7 in ... 46 3.4 1 (EU335913) HIV-1 isolate 98PTRJd35 from Portugal envelope gl... 46 3.4 1 (ER469388) 1092963943222 Global-Ocean-Sampling_GS-35-01-01-1... 46 3.4 1
>(BJ437637) Dictyostelium discoideum cDNA clone:ddv34k20, 3' end, single read. Length = 789
Score = 1322 bits (667), Expect = 0.0 Identities = 670/670 (100%) Strand = Plus / Minus
Query: 537 ttgaaaaatggatttacagtgatttaactaataatacatctatgtatataactaatatta 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 789 ttgaaaaatggatttacagtgatttaactaataatacatctatgtatataactaatatta 730
Query: 597 caagagatgacattacaatatcacaaantaaatgtaactattcaatggtttgataaggct 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 729 caagagatgacattacaatatcacaaantaaatgtaactattcaatggtttgataaggct 670
Query: 657 acaaatatatcattcgctggtaataatttacaaatgaacccatcaacttcaaaatataca 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 669 acaaatatatcattcgctggtaataatttacaaatgaacccatcaacttcaaaatataca 610
Query: 717 atttcaatcaattcatatccatttagaaatcgattaagtaaattagaattattaatgtca 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 609 atttcaatcaattcatatccatttagaaatcgattaagtaaattagaattattaatgtca 550
Query: 777 gcaacatttgaatcatctagcagtgacgatatttgttcatctcaacaatttggaaataat 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 549 gcaacatttgaatcatctagcagtgacgatatttgttcatctcaacaatttggaaataat 490
Query: 837 acaaacgaagattatttaaaaattcaaattggagatcattcaatgtatgcaagattctta 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 489 acaaacgaagattatttaaaaattcaaattggagatcattcaatgtatgcaagattctta 430
Query: 897 aaaagaggtattgcagatggactaattaccccaatcgataatagagttattgaaaataat 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 aaaagaggtattgcagatggactaattaccccaatcgataatagagttattgaaaataat 370
Query: 957 caaactcaatcaaattctgaatcattctcatcttcatatattggtattataataccacag 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 caaactcaatcaaattctgaatcattctcatcttcatatattggtattataataccacag 310
Query: 1017 tataaatctaaagttatagtagatcctgatttctcagtattattagatcattcatcaagt 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 tataaatctaaagttatagtagatcctgatttctcagtattattagatcattcatcaagt 250
Query: 1077 tcatcttcatcaccaaattcaatttgttctaaaaaatccagtggattaagtggtggtgaa 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 tcatcttcatcaccaaattcaatttgttctaaaaaatccagtggattaagtggtggtgaa 190
Query: 1137 attgctggtattgtaataggtagtgtcacatttgctgcagtagtaatattctcactttcc 1196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 attgctggtattgtaataggtagtgtcacatttgctgcagtagtaatattctcactttcc 130
Query: 1197 tttcattttg 1206 |||||||||| Sbjct: 129 tttcattttg 120
Score = 77.8 bits (39), Expect = 1e-09 Identities = 39/39 (100%) Strand = Plus / Minus
Query: 1286 gaatgtattatatttatcatctttggtaaatttaataaa 1324 ||||||||||||||||||||||||||||||||||||||| Sbjct: 40 gaatgtattatatttatcatctttggtaaatttaataaa 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,630,685,917 Number of extensions: 105136939 Number of successful extensions: 10028536 Number of sequences better than 10.0: 173 Length of query: 1324 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1300 Effective length of database: 97,308,875,965 Effective search space: 126501538754500 Effective search space used: 126501538754500 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 3 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |