Contig-U12403-1
Contig ID Contig-U12403-1
Contig update 2002.12.18
Contig sequence
>Contig-U12403-1 (Contig-U12403-1Q) /CSM_Contig/Contig-U12403-1Q.Seq.d
ACTGTTGGCCTACTGGTAATCAATGAAAATTATAGATAAAATTCAAAAGA
AAAAAGAAAGTAATACACCATTTTATTCATTCGAATATTTTCCACCAAAA
ACCATGGAAGGTGTACAAAATTTATATGACCGTTTAGGTAGAATGTTATT
GTTTGAACCATTGTTTATAGATATTACATGGGGAGCAGGTGGATCAACAT
CAGCCTTAACCTTGGAAATTGCAGAGAAGGCACAAAACGTTTGTGGTTTA
GAAACAATGATGCATTTAACCTGTACCAATATGCCAGTGAGTGAGATTAT
CTATGCATTGGATAAAGCAAAATCAACAGGTATTAGAAATATATTGGCAT
TACGTGGNGACCCACCACGTGGTGAAGAGTGGAAAAAGATTGAGGGTGGA
TTTGCATACNNNNNNNNN----------CACGTTCTTATATCGCTCGTAC
TGGCTCCTGGGATGAATTTCCAAATGGTCGTTGGGGTGACTATAGATCAC
CAGCATTTGGTGATCTTTCCGATTACCATTTAGGTGGTGTCACACCTCCA
CCAGGTGGTTCTGCAAATAATAATACCACCACCACCACCACTGGTGACTC
TGTTGTTGTTCCAAATATTTATGGTGATTCACCACAATCAGAACAAGATG
TTTATAATGTTTTCGCTTCCTATTGTTCAGGTAATATCAAGAGACTACCA
TGGAATGATTCACCATTGTCATTGGAATCTGAAAATATTAAAGAGCAATT
AGTATTTTTAAATAAGAATGGTTTCCTTACAATCAATTCACAACCTGCAA
TCAATGGTTTACCATCAACCGATAAACAACATGGTTGGGGTGGTAAGAAA
TGGTATTGTCTACAAAAAAGCATACATTGAATTTTTTGCCTCACCAGAGA
ATACCTTAAAACTCATCGAATACTTTAAGAAATGTCCAATGATCACTTAT
CATGCAGTCAATCGTAAAGGTGATAGTAAAACCAATACCAAAGGAACTAA
CGCCGTCACTTGGGGTATCTTCCCAGGTAAGGAAATCATTCAACCAACAG
TTGTTGATCATAATTCTTTTATGGTTTGGAAGGATGAAGCTTTTGCTCTC
TGGGAAACTCAATGGTCTTCAACTTACTCTCCATCATCAACTTCTCGTAC
TCTACTCGATTCAATGATCAATAATTATTATCTCATCAATATCGTTGATA
ATAACTTTATAAATGGTAATATTTTCCAATCATTCACTGATTTAGTTAAT
AATTTATCATCACCAGTACTTTCTTCCTCTTCAAATGGTATTCAATCTTC
AACTACTTCAAATACTGCCTCAATTTAATAATTAATTTTTTTTTTAATTA
TATATATATAAATAAATAAATAAATAAATAATAAAT

Gap gap included
Contig length 1376
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1642944
End point 1641594
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 6
Link to clone list U12403
List of clone(s)

est1=VHB582F,1,409
est2=VSG248E,410,1230
est3=VHP612Z,616,1096
est4=VHB582Z,618,1368
est5=CHI821Z,713,1109
est6=VHI819Z,807,1091
Translated Amino Acid sequence
llayw*SMKIIDKIQKKKESNTPFYSFEYFPPKTMEGVQNLYDRLGRMLLFEPLFIDITW
GAGGSTSALTLEIAEKAQNVCGLETMMHLTCTNMPVSEIIYALDKAKSTGIRNILALRGD
PPRGEEWKKIEGGFAYXXX---

---RSYIARTGSWDEFPNGRWGDYRSPAFGDLSDYHLGGVTPPPGGSANNNTTTTTTGDS
VVVPNIYGDSPQSEQDVYNVFASYCSGNIKRLPWNDSPLSLESENIKEQLVFLNKNGFLT
INSQPAINGLPSTDKQHGWGGKKWYCLQKSIH*ifcltreylkthril*emsndhlscsq
s*r***nqyqrn*rrhlgylpr*gnhstnsc*s*ffygleg*sfcslgnsmvfnllsiin
fsystrfndq*llshqyr***lykw*yfpiih*fs**fiitstfflfkwysifnyfkycl
nliinfffnyiyink*ink**


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllvinenyr*nskekrk*ytilfirifstknhgrctkfi*pfr*nviv*tivyryym
gsrwinislnlgncregtkrlwfrnndafnlyqyase*dylcig*skinry*kyigitwx
pttw*rvekd*gwicixxx---

---hvlislvlapgmnfqmvvgvtidhqhlvifpiti*vvshlhqvvlqiiippppplvt
lllfqifmvihhnqnkmfimfslpivqvisrdyhgmihhchwnlkilksn*yf*irmvsl
qsihnlqsmvyhqpinnmvgvvrngivykkayieffaspentlklieyfkkcpmityhav
nrkgdsktntkgtnavtwgifpgkeiiqptvvdhnsfmvwkdeafalwetqwsstyspss
tsrtlldsminnyylinivdnnfingnifqsftdlvnnlsspvlssssngiqssttsnta
si**liffliiyi*ink*innk

Frame B:
llayw*SMKIIDKIQKKKESNTPFYSFEYFPPKTMEGVQNLYDRLGRMLLFEPLFIDITW
GAGGSTSALTLEIAEKAQNVCGLETMMHLTCTNMPVSEIIYALDKAKSTGIRNILALRGD
PPRGEEWKKIEGGFAYXXX---

---tflyrsywllg*iskwslg*l*itsiw*sfrlpfrwchtstrwfck**yhhhhhw*l
cccskylw*fttirtrcl*cfrfllfr*yqettme*ftivigi*ky*raisifk*ewfpy
nqfttcnqwftinr*ttwlgw*emvlstkkhtlnflphqrip*nssntlrnvq*slimqs
ivkvivkpipkeltpslgvssqvrksfnqqlliiillwfgrmklllsgklnglqltlhhq
llvlysiq*siiiissisliitl*mvifsnhsli*liiyhhqyflplqmvfnlqllqilp
qfnn*fff*lyiyk*ink*iin

Frame C:
cwptgnq*kl*ikfkrkkkvihhfihsnifhqkpwkvykiymtv*vecyclnhcl*ilhg
eqvdqhqp*pwklqrrhktfvv*kq*ci*pvpicq*vrlsmhwikqnqqvleiywhyvxt
hhvvksgkrlrvdlhtxx---

---RSYIARTGSWDEFPNGRWGDYRSPAFGDLSDYHLGGVTPPPGGSANNNTTTTTTGDS
VVVPNIYGDSPQSEQDVYNVFASYCSGNIKRLPWNDSPLSLESENIKEQLVFLNKNGFLT
INSQPAINGLPSTDKQHGWGGKKWYCLQKSIH*ifcltreylkthril*emsndhlscsq
s*r***nqyqrn*rrhlgylpr*gnhstnsc*s*ffygleg*sfcslgnsmvfnllsiin
fsystrfndq*llshqyr***lykw*yfpiih*fs**fiitstfflfkwysifnyfkycl
nliinfffnyiyink*ink**

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12403-1 (Contig-U12403-1Q)
/CSM_Contig/Contig-U12403-1Q.Seq.d
(1386 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12403-1 (Contig-U12403-1Q) /CSM_Contig/Conti... 1475 0.0
Contig-U11216-1 (Contig-U11216-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U13959-1 (Contig-U13959-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13918-1 (Contig-U13918-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13856-1 (Contig-U13856-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13106-1 (Contig-U13106-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12522-1 (Contig-U12522-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12477-1 (Contig-U12477-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12323-1 (Contig-U12323-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12352-1 (Contig-U12352-1Q) /CSM_Contig/Conti... 34 0.39

>Contig-U12403-1 (Contig-U12403-1Q) /CSM_Contig/Contig-U12403-1Q.Seq.d
Length = 1386

Score = 1475 bits (744), Expect = 0.0
Identities = 744/744 (100%)
Strand = Plus / Plus


Query: 592 tggtgactctgttgttgttccaaatatttatggtgattcaccacaatcagaacaagatgt 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tggtgactctgttgttgttccaaatatttatggtgattcaccacaatcagaacaagatgt 651


Query: 652 ttataatgttttcgcttcctattgttcaggtaatatcaagagactaccatggaatgattc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttataatgttttcgcttcctattgttcaggtaatatcaagagactaccatggaatgattc 711


Query: 712 accattgtcattggaatctgaaaatattaaagagcaattagtatttttaaataagaatgg 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 accattgtcattggaatctgaaaatattaaagagcaattagtatttttaaataagaatgg 771


Query: 772 tttccttacaatcaattcacaacctgcaatcaatggtttaccatcaaccgataaacaaca 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tttccttacaatcaattcacaacctgcaatcaatggtttaccatcaaccgataaacaaca 831


Query: 832 tggttggggtggtaagaaatggtattgtctacaaaaaagcatacattgaattttttgcct 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tggttggggtggtaagaaatggtattgtctacaaaaaagcatacattgaattttttgcct 891


Query: 892 caccagagaataccttaaaactcatcgaatactttaagaaatgtccaatgatcacttatc 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 caccagagaataccttaaaactcatcgaatactttaagaaatgtccaatgatcacttatc 951


Query: 952 atgcagtcaatcgtaaaggtgatagtaaaaccaataccaaaggaactaacgccgtcactt 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 atgcagtcaatcgtaaaggtgatagtaaaaccaataccaaaggaactaacgccgtcactt 1011


Query: 1012 ggggtatcttcccaggtaaggaaatcattcaaccaacagttgttgatcataattctttta 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 ggggtatcttcccaggtaaggaaatcattcaaccaacagttgttgatcataattctttta 1071


Query: 1072 tggtttggaaggatgaagcttttgctctctgggaaactcaatggtcttcaacttactctc 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 tggtttggaaggatgaagcttttgctctctgggaaactcaatggtcttcaacttactctc 1131


Query: 1132 catcatcaacttctcgtactctactcgattcaatgatcaataattattatctcatcaata 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 catcatcaacttctcgtactctactcgattcaatgatcaataattattatctcatcaata 1191


Query: 1192 tcgttgataataactttataaatggtaatattttccaatcattcactgatttagttaata 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 tcgttgataataactttataaatggtaatattttccaatcattcactgatttagttaata 1251


Query: 1252 atttatcatcaccagtactttcttcctcttcaaatggtattcaatcttcaactacttcaa 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 atttatcatcaccagtactttcttcctcttcaaatggtattcaatcttcaactacttcaa 1311


Query: 1312 atactgcctcaatttaataattaa 1335
||||||||||||||||||||||||
Sbjct: 1312 atactgcctcaatttaataattaa 1335


Score = 805 bits (406), Expect = 0.0
Identities = 409/409 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtaatcaatgaaaattatagataaaattcaaaagaaaaaagaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggtaatcaatgaaaattatagataaaattcaaaagaaaaaagaaag 60


Query: 61 taatacaccattttattcattcgaatattttccaccaaaaaccatggaaggtgtacaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taatacaccattttattcattcgaatattttccaccaaaaaccatggaaggtgtacaaaa 120


Query: 121 tttatatgaccgtttaggtagaatgttattgtttgaaccattgtttatagatattacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttatatgaccgtttaggtagaatgttattgtttgaaccattgtttatagatattacatg 180


Query: 181 gggagcaggtggatcaacatcagccttaaccttggaaattgcagagaaggcacaaaacgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gggagcaggtggatcaacatcagccttaaccttggaaattgcagagaaggcacaaaacgt 240


Query: 241 ttgtggtttagaaacaatgatgcatttaacctgtaccaatatgccagtgagtgagattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgtggtttagaaacaatgatgcatttaacctgtaccaatatgccagtgagtgagattat 300


Query: 301 ctatgcattggataaagcaaaatcaacaggtattagaaatatattggcattacgtggnga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctatgcattggataaagcaaaatcaacaggtattagaaatatattggcattacgtggnga 360


Query: 361 cccaccacgtggtgaagagtggaaaaagattgagggtggatttgcatac 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cccaccacgtggtgaagagtggaaaaagattgagggtggatttgcatac 409


Score = 289 bits (146), Expect = 4e-78
Identities = 146/146 (100%)
Strand = Plus / Plus


Query: 429 cacgttcttatatcgctcgtactggctcctgggatgaatttccaaatggtcgttggggtg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cacgttcttatatcgctcgtactggctcctgggatgaatttccaaatggtcgttggggtg 488


Query: 489 actatagatcaccagcatttggtgatctttccgattaccatttaggtggtgtcacacctc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 actatagatcaccagcatttggtgatctttccgattaccatttaggtggtgtcacacctc 548


Query: 549 caccaggtggttctgcaaataataat 574
||||||||||||||||||||||||||
Sbjct: 549 caccaggtggttctgcaaataataat 574


>Contig-U11216-1 (Contig-U11216-1Q) /CSM_Contig/Contig-U11216-1Q.Seq.d
Length = 2727

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtaatcaa 23
|||||||||||||||||||||||
Sbjct: 876 actgttggcctactggtaatcaa 898


>Contig-U13959-1 (Contig-U13959-1Q) /CSM_Contig/Contig-U13959-1Q.Seq.d
Length = 682

Score = 40.1 bits (20), Expect = 0.006
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtaat 20
||||||||||||||||||||
Sbjct: 2 actgttggcctactggtaat 21


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,408
Number of Sequences: 6905
Number of extensions: 17408
Number of successful extensions: 2036
Number of sequences better than 10.0: 568
length of query: 1386
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1370
effective length of database: 5,564,391
effective search space: 7623215670
effective search space used: 7623215670
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12403-1 (Contig-U12403-1Q) /CSM_Contig/Contig-U12403-1Q.Seq.d
(1386 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ437600) Dictyostelium discoideum cDNA clone:ddv34c21, 3' ... 930 0.0 2
(AU266191) Dictyostelium discoideum vegetative cDNA clone:VS... 511 0.0 3
(BJ446233) Dictyostelium discoideum cDNA clone:ddv62g04, 3' ... 474 0.0 2
(BJ419016) Dictyostelium discoideum cDNA clone:ddv34c21, 5' ... 688 0.0 2
(BJ380733) Dictyostelium discoideum cDNA clone:ddc39j06, 3' ... 452 0.0 2
(AU266192) Dictyostelium discoideum vegetative cDNA clone:VS... 609 e-169 1
(BJ441850) Dictyostelium discoideum cDNA clone:ddv48f06, 3' ... 428 e-123 2
(FE257797) CAPH681.fwd CAPH Naegleria gruberi amoeba stage N... 56 5e-16 4
(FE247466) CAPG9967.rev CAPG Naegleria gruberi amoeba stage ... 56 9e-16 4
(FE245790) CAPG9072.rev CAPG Naegleria gruberi amoeba stage ... 54 3e-15 4
(FE242204) CAPG7055.rev CAPG Naegleria gruberi amoeba stage ... 54 4e-14 4
(FE245438) CAPG8880.rev CAPG Naegleria gruberi amoeba stage ... 54 6e-12 4
(FE257796) CAPH681.rev CAPH Naegleria gruberi amoeba stage N... 54 7e-12 4
(FE233917) CAPG2539.rev CAPG Naegleria gruberi amoeba stage ... 54 2e-11 4
(FE247422) CAPG9943.rev CAPG Naegleria gruberi amoeba stage ... 54 2e-11 4
(FE240191) CAPG5732.rev CAPG Naegleria gruberi amoeba stage ... 54 3e-11 4
(FE238027) CAPG4655.rev CAPG Naegleria gruberi amoeba stage ... 54 1e-10 4
(EE009210) ROE00005223 Rhizopus oryzae Company Rhizopus oryz... 58 3e-10 4
(FE246829) CAPG9627.rev CAPG Naegleria gruberi amoeba stage ... 54 1e-09 4
(DY888675) CeleSEQ5876 Cunninghamella elegans pBluescript (E... 54 3e-09 3
(DY886795) CeleSEQ2584 Cunninghamella elegans pBluescript (E... 54 3e-09 3
(DY960467) CLSM10801.b1_A13.ab1 CLS(LMS) lettuce sativa Lact... 56 5e-09 2
(DW105150) CLRX2966.b1_K22.ab1 CLR(XYZ) lettuce serriola Lac... 56 5e-09 2
(BQ993154) QGF27L18.yg.ab1 QG_EFGHJ lettuce serriola Lactuca... 56 5e-09 2
(FE236996) CAPG4161.rev CAPG Naegleria gruberi amoeba stage ... 54 1e-08 4
(BQ871764) QGI12M03.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 52 8e-08 2
(AL892928) Xenopus tropicalis EST, clone TEgg038n23 5'. 50 3e-07 3
(FE238095) CAPG4688.rev CAPG Naegleria gruberi amoeba stage ... 54 9e-07 3
(FE243990) CAPG7948.rev CAPG Naegleria gruberi amoeba stage ... 54 1e-06 3
(FE240958) CAPG6104.rev CAPG Naegleria gruberi amoeba stage ... 54 2e-06 3
(FE239350) CAPG5318.rev CAPG Naegleria gruberi amoeba stage ... 54 2e-06 3
(DW094782) CLPY592.b1_O04.ab1 CLP(XYZ) lettuce perennis Lact... 46 4e-06 2
(BC136195) Xenopus tropicalis hypothetical protein LOC100125... 50 5e-06 3
(FE234537) CAPG2877.rev CAPG Naegleria gruberi amoeba stage ... 54 5e-06 3
(FE243457) CAPG7654.rev CAPG Naegleria gruberi amoeba stage ... 54 5e-06 3
(FE231961) CAPG1498.rev CAPG Naegleria gruberi amoeba stage ... 54 6e-06 3
(FE243983) CAPG7944.rev CAPG Naegleria gruberi amoeba stage ... 54 6e-06 3
(FG177439) AGN_RNC118xk02f1.ab1 AGN_RNC Nicotiana tabacum cD... 52 7e-06 2
(EH664978) 16G09 Transformed tobacco Lambda Zap II library N... 52 7e-06 2
(FG133230) AGN_ELP018xf14f1.ab1 AGN_ELP Nicotiana tabacum cD... 52 7e-06 2
(FG138814) AGN_ELP026xd05f1.ab1 AGN_ELP Nicotiana tabacum cD... 52 8e-06 2
(DV159505) KP1B.037J14F.050628T7 KP1B Nicotiana tabacum cDNA... 52 9e-06 2
(EE005562) ROE00012099 Rhizopus oryzae Company Rhizopus oryz... 62 2e-05 2
(FE256612) CAPH620.fwd CAPH Naegleria gruberi amoeba stage N... 56 5e-05 2
(AJ245414) Arabidopsis thaliana mRNA for methylenetetrahydro... 50 6e-05 2
(CJ770767) Ipomoea nil cDNA clone:jmsf40n21, 3' end. 52 6e-05 2
(CJ766793) Ipomoea nil cDNA clone:jmsf48e15, 3' end. 52 6e-05 2
(BJ577767) Ipomoea nil cDNA clone:jm36c04, 3' end, single read. 52 6e-05 2
(CJ767667) Ipomoea nil cDNA clone:jmsf50d05, 3' end. 52 6e-05 2
(BJ566108) Ipomoea nil cDNA clone:jm10e12, 3' end, single read. 52 6e-05 2
(BJ566019) Ipomoea nil cDNA clone:jm10a05, 3' end, single read. 52 6e-05 2
(DR372798) 109757 CERES-149 Arabidopsis thaliana cDNA clone ... 50 6e-05 2
(DR041387) BNE00002863 Bigelowiella natans Non-normalized Bi... 48 2e-04 2
(DR040808) BNE00002732 Bigelowiella natans Non-normalized Bi... 48 2e-04 2
(EY103604) CAZI3261.fwd CAZI Artemisia annua normalized leaf... 56 3e-04 2
(EY108195) CAZI5638.fwd CAZI Artemisia annua normalized leaf... 56 3e-04 2
(EE002521) ROE00012003 Rhizopus oryzae Company Rhizopus oryz... 44 9e-04 2
(CP000498) Pichia stipitis CBS 6054 chromosome 4, complete s... 58 0.001 1
(BC046708) Xenopus laevis 5,10-methylenetetrahydrofolate red... 50 0.001 2
(DY948295) CHPY3666.b1_C06.ab1 CHP(XYZ) plains sunflower Hel... 40 0.003 2
(DY912494) CHAX7790.b1_L03.ab1 CHA(XYZ) common wild sunflowe... 40 0.003 2
(EL482269) CHUM426.b1_C11.ab1 CHU(LMS) puzzle sunflower Heli... 40 0.003 2
(EL427734) CHCM707.b1_F10.ab1 CHC(LMS) Texas blueweed Helian... 40 0.003 2
(CF085822) QHL7F05.yg.ab1 QH_L sunflower H.paradoxus (salt s... 40 0.003 2
(AJ540208) Helianthus annuus EST, clone HM0013. 40 0.003 2
(CR380956) Candida glabrata strain CBS138 chromosome J compl... 56 0.004 1
(EY113211) CAZI8233.rev CAZI Artemisia annua normalized leaf... 56 0.004 1
(EY108194) CAZI5638.rev CAZI Artemisia annua normalized leaf... 56 0.004 1
(EY106470) CAZI4761.rev CAZI Artemisia annua normalized leaf... 56 0.004 1
(EY103603) CAZI3261.rev CAZI Artemisia annua normalized leaf... 56 0.004 1
(EY099225) CAZI24141.rev CAZI Artemisia annua normalized lea... 56 0.004 1
(EY092532) CAZI20777.rev CAZI Artemisia annua normalized lea... 56 0.004 1
(EY091512) CAZI19915.rev CAZI Artemisia annua normalized lea... 56 0.004 1
(EY084764) CAZI16525.rev CAZI Artemisia annua normalized lea... 56 0.004 1
(EY079414) CAZI13792.rev CAZI Artemisia annua normalized lea... 56 0.004 1
(EY077997) CAZI1308.fwd CAZI Artemisia annua normalized leaf... 56 0.004 1
(EY077996) CAZI1308.rev CAZI Artemisia annua normalized leaf... 56 0.004 1
(EY077984) CAZI13074.rev CAZI Artemisia annua normalized lea... 56 0.004 1
(EY052169) CATC3587.fwd CATC Artemisia annua, Tanzanian, fro... 56 0.004 1
(EY052168) CATC3587.rev CATC Artemisia annua, Tanzanian, fro... 56 0.004 1
(DY885083) CeleSEQ26 Cunninghamella elegans pBluescript (Eco... 54 0.005 2
(EY091513) CAZI19915.fwd CAZI Artemisia annua normalized lea... 40 0.009 2
(AC004005) Arabidopsis thaliana chromosome 2 clone F6E13 map... 42 0.010 2
(AF370515) Arabidopsis thaliana putative methylenetetrahydro... 42 0.012 2
(AY050434) Arabidopsis thaliana At2g44160/F6E13.29 mRNA, com... 42 0.012 2
(AF181967) Arabidopsis thaliana methylenetetrahydrofolate re... 42 0.012 2
(EX276095) 1456892_5_D02_013 PY06 Carica papaya cDNA, mRNA s... 40 0.012 2
(EX258524) 1438562_5_H08_026 PY06 Carica papaya cDNA, mRNA s... 40 0.012 2
(CN136614) OX1_44_F12.b1_A002 Oxidatively-stressed leaves an... 42 0.012 2
(CN125767) RHOH1_13_D11.b1_A002 Acid- and alkaline-treated r... 42 0.012 2
(CN130057) RHOH1_39_B09.b1_A002 Acid- and alkaline-treated r... 42 0.012 2
(EL462109) CHTS16647.b1_N09.ab1 CHT(LMS) Jerusalem artichoke... 40 0.012 2
(CN128752) RHOH1_31_H06.b1_A002 Acid- and alkaline-treated r... 42 0.012 2
(CF482604) POL1_8_B02.b1_A002 Pollen Sorghum bicolor cDNA cl... 42 0.012 2
(CD429221) ETH1_3_F11.b1_A002 Ethylene-treated seedlings Sor... 42 0.012 2
(CW183681) 104_599_11164743_148_36676_054 Sorghum methylatio... 42 0.012 2
(CW289050) 104_767_11412272_148_35540_020 Sorghum methylatio... 42 0.012 2
(CW151253) 104_552_11143839_116_36315_064 Sorghum methylatio... 42 0.012 2
(CA244952) SCSFFL4085A08.b FL4 Saccharum officinarum cDNA cl... 42 0.012 2
(CW151254) 104_552_11143839_148_36316_064 Sorghum methylatio... 42 0.012 2

>(BJ437600) Dictyostelium discoideum cDNA clone:ddv34c21, 3' end,
single read.
Length = 750

Score = 930 bits (469), Expect(2) = 0.0
Identities = 472/473 (99%)
Strand = Plus / Minus


Query: 849 aatggtattgtctacaaaaaagcatacattgaattttttgcctcaccagagaatacctta 908
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 539 aatggtattgtctacaaaaaagcatacattgaattctttgcctcaccagagaatacctta 480


Query: 909 aaactcatcgaatactttaagaaatgtccaatgatcacttatcatgcagtcaatcgtaaa 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaactcatcgaatactttaagaaatgtccaatgatcacttatcatgcagtcaatcgtaaa 420


Query: 969 ggtgatagtaaaaccaataccaaaggaactaacgccgtcacttggggtatcttcccaggt 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggtgatagtaaaaccaataccaaaggaactaacgccgtcacttggggtatcttcccaggt 360


Query: 1029 aaggaaatcattcaaccaacagttgttgatcataattcttttatggtttggaaggatgaa 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaggaaatcattcaaccaacagttgttgatcataattcttttatggtttggaaggatgaa 300


Query: 1089 gcttttgctctctgggaaactcaatggtcttcaacttactctccatcatcaacttctcgt 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gcttttgctctctgggaaactcaatggtcttcaacttactctccatcatcaacttctcgt 240


Query: 1149 actctactcgattcaatgatcaataattattatctcatcaatatcgttgataataacttt 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 actctactcgattcaatgatcaataattattatctcatcaatatcgttgataataacttt 180


Query: 1209 ataaatggtaatattttccaatcattcactgatttagttaataatttatcatcaccagta 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ataaatggtaatattttccaatcattcactgatttagttaataatttatcatcaccagta 120


Query: 1269 ctttcttcctcttcaaatggtattcaatcttcaactacttcaaatactgcctc 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ctttcttcctcttcaaatggtattcaatcttcaactacttcaaatactgcctc 67

Score = 422 bits (213), Expect(2) = 0.0
Identities = 213/213 (100%)
Strand = Plus / Minus


Query: 637 atcagaacaagatgtttataatgttttcgcttcctattgttcaggtaatatcaagagact 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 atcagaacaagatgtttataatgttttcgcttcctattgttcaggtaatatcaagagact 691


Query: 697 accatggaatgattcaccattgtcattggaatctgaaaatattaaagagcaattagtatt 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 accatggaatgattcaccattgtcattggaatctgaaaatattaaagagcaattagtatt 631


Query: 757 tttaaataagaatggtttccttacaatcaattcacaacctgcaatcaatggtttaccatc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tttaaataagaatggtttccttacaatcaattcacaacctgcaatcaatggtttaccatc 571


Query: 817 aaccgataaacaacatggttggggtggtaagaa 849
|||||||||||||||||||||||||||||||||
Sbjct: 570 aaccgataaacaacatggttggggtggtaagaa 538

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,430,604,490
Number of extensions: 82071757
Number of successful extensions: 6134485
Number of sequences better than 10.0: 289
Length of query: 1386
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1362
Effective length of database: 97,308,875,965
Effective search space: 132534689064330
Effective search space used: 132534689064330
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12403-1 (Contig-U12403-1Q) /CSM_Contig/Contig-U12403-1Q.Seq.d
(1386 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q60HE5) RecName: Full=Methylenetetrahydrofolate reductase; ... 124 3e-55
CR382128_16(CR382128|pid:none) Yarrowia lipolytica strain CLIB12... 137 4e-55
(P42898) RecName: Full=Methylenetetrahydrofolate reductase; ... 122 6e-55
AK312907_1(AK312907|pid:none) Homo sapiens cDNA, FLJ93354, highl... 122 6e-55
A47328_1(A47328|pid:none) Sequence 3 from Patent WO9533054. &AF... 121 1e-54
BC053509_1(BC053509|pid:none) Homo sapiens 5,10-methylenetetrahy... 121 1e-54
BC046708_1(BC046708|pid:none) Xenopus laevis 5,10-methylenetetra... 121 5e-54
(Q5I598) RecName: Full=Methylenetetrahydrofolate reductase; ... 121 9e-54
AM920430_48(AM920430|pid:none) Penicillium chrysogenum Wisconsin... 144 9e-54
CR792439_1(CR792439|pid:none) Zebrafish DNA sequence from clone ... 118 2e-53
CU207376_2(CU207376|pid:none) Mouse DNA sequence from clone DN-4... 119 2e-52
AL606929_3(AL606929|pid:none) Mouse DNA sequence from clone RP23... 119 2e-52
CU207376_3(CU207376|pid:none) Mouse DNA sequence from clone DN-4... 119 2e-52
AK030192_1(AK030192|pid:none) Mus musculus adult male testis cDN... 119 2e-52
AM270004_13(AM270004|pid:none) Aspergillus niger contig An02c009... 142 2e-52
AP007159_456(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 141 2e-51
FN392320_1180(FN392320|pid:none) Pichia pastoris GS115 chromosom... 131 8e-49
AB209113_1(AB209113|pid:none) Homo sapiens mRNA for 5,10-methyle... 121 1e-45
(Q17693) RecName: Full=Probable methylenetetrahydrofolate reduct... 115 2e-44
U39849_6(U39849|pid:none) Caenorhabditis elegans cosmid C06A8, c... 115 2e-44
CR382139_53(CR382139|pid:none) Debaryomyces hansenii strain CBS7... 129 4e-44
CQ795550_1(CQ795550|pid:none) Sequence 23 from Patent WO20040249... 144 4e-44
X94106_1(X94106|pid:none) S.cerevisiae G2882, G2889, and SUP44 g... 142 4e-44
CR380952_287(CR380952|pid:none) Candida glabrata strain CBS138 c... 135 5e-42
CU640366_980(CU640366|pid:none) Podospora anserina genomic DNA c... 119 1e-38
(Q9SE60) RecName: Full=Methylenetetrahydrofolate reductase 1; ... 161 5e-38
EU972221_1(EU972221|pid:none) Zea mays clone 377830 unknown mRNA. 160 1e-37
(Q9SE94) RecName: Full=Methylenetetrahydrofolate reductase 1; ... 160 1e-37
T00696(T00696;B84875)probable methylenetetrahydrofolate reductas... 159 2e-37
CU928173_113(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 120 3e-37
AJ245414_1(AJ245414|pid:none) Arabidopsis thaliana mRNA for meth... 157 9e-37
AF370515_1(AF370515|pid:none) Arabidopsis thaliana putative meth... 155 3e-36
(Q75HE6) RecName: Full=Probable methylenetetrahydrofolate reduct... 155 3e-36
AE016814_358(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 132 3e-36
BX842620_30(BX842620|pid:none) Neurospora crassa DNA linkage gro... 118 7e-35
(O74927) RecName: Full=Methylenetetrahydrofolate reductase 2; ... 109 7e-35
AJ011686_1(AJ011686|pid:none) Schizosaccharomyces pombe MTHFR2 g... 109 1e-34
CU928181_71(CU928181|pid:none) Zygosaccharomyces rouxii strain C... 145 3e-33
AE017341_732(AE017341|pid:none) Cryptococcus neoformans var. neo... 113 2e-32
CR382126_417(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 141 6e-32
DQ862830_1(DQ862830|pid:none) Triticum monococcum 5,10-methylene... 135 5e-30
FN392320_1138(FN392320|pid:none) Pichia pastoris GS115 chromosom... 130 9e-29
FM992690_279(FM992690|pid:none) Candida dubliniensis CD36 chromo... 130 9e-29
AK317569_1(AK317569|pid:none) Arabidopsis thaliana AT3G59970 mRN... 130 1e-28
FM992689_949(FM992689|pid:none) Candida dubliniensis CD36 chromo... 129 2e-28
EF144392_1(EF144392|pid:none) Populus trichocarpa clone PX0019_D... 127 7e-28
CP000499_540(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 126 2e-27
CR382138_389(CR382138|pid:none) Debaryomyces hansenii strain CBS... 126 2e-27
CR382128_563(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 123 2e-26
AE016819_690(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 121 7e-26
AM920436_1591(AM920436|pid:none) Penicillium chrysogenum Wiscons... 120 2e-25
AM270207_9(AM270207|pid:none) Aspergillus niger contig An09c0180... 119 3e-25
S46454(S46454)5,10-methylenetetrahydrofolate reductase (FADH2) (... 116 2e-24
AL606929_5(AL606929|pid:none) Mouse DNA sequence from clone RP23... 114 1e-23
BC100550_1(BC100550|pid:none) Mus musculus 5,10-methylenetetrahy... 112 2e-23
CR382124_507(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 112 2e-23
AK043144_1(AK043144|pid:none) Mus musculus 7 days neonate cerebe... 112 4e-23
CP000769_2648(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 108 4e-22
CP000251_2668(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 105 4e-21
AE016824_2(AE016824|pid:none) Leptospira interrogans serovar Cop... 103 2e-20
AF253051_1(AF253051|pid:none) Leptospira interrogans 5,10 methyl... 103 2e-20
CP001197_3009(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 100 1e-19
AE017285_993(AE017285|pid:none) Desulfovibrio vulgaris subsp. vu... 100 1e-19
CP000113_2962(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 100 1e-19
AM494972_673(AM494972|pid:none) Leishmania braziliensis chromoso... 98 8e-19
AM502254_22(AM502254|pid:none) Leishmania infantum chromosome 36. 97 2e-18
AF404272_1(AF404272|pid:none) Mus musculus methylenetetrahydrofo... 96 2e-18
CP000612_2155(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 96 4e-18
CP000481_988(CP000481|pid:none) Acidothermus cellulolyticus 11B ... 95 5e-18
CP001080_466(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 95 5e-18
CP001229_755(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 95 5e-18
CP000482_1073(CP000482|pid:none) Pelobacter propionicus DSM 2379... 94 9e-18
(O67422) RecName: Full=5,10-methylenetetrahydrofolate reductase;... 94 1e-17
CP000568_98(CP000568|pid:none) Clostridium thermocellum ATCC 274... 94 1e-17
CP001089_2107(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 94 2e-17
CP001230_68(CP001230|pid:none) Persephonella marina EX-H1, compl... 92 3e-17
AE017221_1650(AE017221|pid:none) Thermus thermophilus HB27, comp... 92 6e-17
AB029373_3(AB029373|pid:none) Thermus thermophilus genes for DNA... 92 6e-17
CP001071_1034(CP001071|pid:none) Akkermansia muciniphila ATCC BA... 91 1e-16
CT573213_2100(CT573213|pid:none) Frankia alni str. ACN14A chromo... 91 1e-16
CP001124_3265(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 89 3e-16
CP000264_1026(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 89 4e-16
CP000509_3035(CP000509|pid:none) Nocardioides sp. JS614, complet... 89 4e-16
CP000850_3343(CP000850|pid:none) Salinispora arenicola CNS-205, ... 88 8e-16
CP000820_5015(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 87 1e-15
CP000088_1048(CP000088|pid:none) Thermobifida fusca YX, complete... 86 2e-15
CP000249_1371(CP000249|pid:none) Frankia sp. CcI3, complete geno... 86 3e-15
CP000031_2947(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 85 5e-15
AP009493_5399(AP009493|pid:none) Streptomyces griseus subsp. gri... 85 7e-15
CP001108_1452(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 84 9e-15
CP000377_1700(CP000377|pid:none) Silicibacter sp. TM1040, comple... 84 1e-14
DQ838002_35(DQ838002|pid:none) Streptomyces lavendulae strain NR... 84 1e-14
CP000142_1860(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 84 1e-14
CP000440_186(CP000440|pid:none) Burkholderia ambifaria AMMD chro... 84 2e-14
CP001025_199(CP001025|pid:none) Burkholderia ambifaria MC40-6 ch... 84 2e-14
CP000607_692(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 83 3e-14
CP000319_358(CP000319|pid:none) Nitrobacter hamburgensis X14, co... 82 5e-14
EU147298_19(EU147298|pid:none) Streptomyces rishiriensis strain ... 82 5e-14
CP000250_1761(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 82 5e-14
AE006470_1348(AE006470|pid:none) Chlorobium tepidum TLS, complet... 82 5e-14
CP001097_1493(CP001097|pid:none) Chlorobium limicola DSM 245, co... 82 6e-14
AM747720_150(AM747720|pid:none) Burkholderia cenocepacia J2315 c... 81 8e-14
CP001389_2089(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 81 8e-14
CP000378_2814(CP000378|pid:none) Burkholderia cenocepacia AU 105... 81 8e-14
CP000958_255(CP000958|pid:none) Burkholderia cenocepacia MC0-3 c... 81 8e-14
CP000614_222(CP000614|pid:none) Burkholderia vietnamiensis G4 ch... 81 8e-14
CP001581_1727(CP001581|pid:none) Clostridium botulinum A2 str. K... 81 8e-14
CP000492_1663(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 81 8e-14
CP000939_1627(CP000939|pid:none) Clostridium botulinum B1 str. O... 81 1e-13
CP001099_777(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 81 1e-13
CP000494_6638(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 81 1e-13
BA000030_6106(BA000030|pid:none) Streptomyces avermitilis MA-468... 81 1e-13
CP000885_3075(CP000885|pid:none) Clostridium phytofermentans ISD... 80 1e-13
AM384985_28(AM384985|pid:none) Streptomyces cinnamonensis furano... 80 1e-13
CP001196_3389(CP001196|pid:none) Oligotropha carboxidovorans OM5... 80 1e-13
CQ795570_1(CQ795570|pid:none) Sequence 43 from Patent WO20040249... 80 2e-13
BX572604_303(BX572604|pid:none) Rhodopseudomonas palustris CGA00... 80 2e-13
CP000448_890(CP000448|pid:none) Syntrophomonas wolfei subsp. wol... 80 2e-13
CP001339_2864(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 80 2e-13
CP001032_4168(CP001032|pid:none) Opitutus terrae PB90-1, complet... 80 2e-13
AL646052_91(AL646052|pid:none) Ralstonia solanacearum GMI1000 ch... 80 2e-13
CP000103_2519(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 79 3e-13
CU914168_155(CU914168|pid:none) Ralstonia solanacearum strain IP... 79 3e-13
CU861906_129(CU861906|pid:none) Ralstonia solanacearum strain Mo... 79 3e-13
AL591688_2208(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 79 3e-13
AB371704_1(AB371704|pid:none) Methylophilus methylotrophus metF ... 79 4e-13
AL953897_11(AL953897|pid:none) Human DNA sequence from clone RP1... 79 4e-13
CP000352_172(CP000352|pid:none) Ralstonia metallidurans CH34, co... 79 5e-13
CP000448_359(CP000448|pid:none) Syntrophomonas wolfei subsp. wol... 79 5e-13
CP000713_904(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 79 5e-13
CP000283_3523(CP000283|pid:none) Rhodopseudomonas palustris BisB... 79 5e-13
CP000738_2088(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 79 5e-13
AC2837(AC2837) 5,10-methylenetetrahydrofolate reductase [importe... 79 5e-13
AM260479_246(AM260479|pid:none) Ralstonia eutropha H16 chromosom... 79 5e-13
E97614(E97614)5,10-methylenetetrahydrofolate reductase (FADH2) (... 79 5e-13
CP000116_2517(CP000116|pid:none) Thiobacillus denitrificans ATCC... 78 7e-13
CP000853_78(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, c... 78 7e-13
CP000830_2068(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 78 9e-13
CP000661_2298(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 78 9e-13
CP000133_2832(CP000133|pid:none) Rhizobium etli CFN 42, complete... 77 1e-12
CP001068_3609(CP001068|pid:none) Ralstonia pickettii 12J chromos... 77 1e-12
CP001110_1525(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 77 1e-12
AY045759_3(AY045759|pid:none) Streptomyces fradiae tylosin biosy... 77 1e-12
CP000450_1830(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 77 1e-12
CP000270_4213(CP000270|pid:none) Burkholderia xenovorans LB400 c... 77 1e-12
CP000943_4120(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 77 1e-12
CP000453_2247(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-... 77 2e-12
(O54235) RecName: Full=5,10-methylenetetrahydrofolate reductase;... 77 2e-12
CP000230_1525(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 77 2e-12
CP000962_1690(CP000962|pid:none) Clostridium botulinum A3 str. L... 76 3e-12
CP001029_1607(CP001029|pid:none) Methylobacterium populi BJ001, ... 76 3e-12
CP000158_2066(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 76 3e-12
CP000613_1999(CP000613|pid:none) Rhodospirillum centenum SW, com... 76 3e-12
AB088224_48(AB088224|pid:none) Streptomyces rochei plasmid pSLA2... 75 4e-12
CP001191_2586(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 75 7e-12
CP000155_1466(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 75 7e-12
CP000781_2812(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 75 7e-12
CP001001_2092(CP001001|pid:none) Methylobacterium radiotolerans ... 75 7e-12
CP001510_1382(CP001510|pid:none) Methylobacterium extorquens AM1... 74 1e-11
AE014291_1408(AE014291|pid:none) Brucella suis 1330 chromosome I... 74 1e-11
CP001034_675(CP001034|pid:none) Natranaerobius thermophilus JW/N... 74 1e-11
CP000697_218(CP000697|pid:none) Acidiphilium cryptum JF-5, compl... 74 1e-11
AP009384_4340(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 74 1e-11
CP001150_482(CP001150|pid:none) Rhodobacter sphaeroides KD131 ch... 74 2e-11
CP001488_1385(CP001488|pid:none) Brucella melitensis ATCC 23457 ... 74 2e-11
AM286690_2619(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 73 2e-11
CP000414_1710(CP000414|pid:none) Leuconostoc mesenteroides subsp... 73 2e-11
CP000143_755(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 ch... 73 3e-11
CP001280_3448(CP001280|pid:none) Methylocella silvestris BL2, co... 73 3e-11
FM211051_13(FM211051|pid:none) Photorhabdus asymbiotica subsp. a... 72 4e-11
AM236080_3331(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 72 4e-11
CP000304_3851(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 72 5e-11
CP001074_2982(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 72 5e-11
AE016825_966(AE016825|pid:none) Chromobacterium violaceum ATCC 1... 72 6e-11
CP001281_3666(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 72 6e-11
CP000390_2016(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 71 8e-11
CP000544_1643(CP000544|pid:none) Halorhodospira halophila SL1, c... 71 8e-11
AM902716_4782(AM902716|pid:none) Bordetella petrii strain DSM 12... 71 8e-11
AE014075_4796(AE014075|pid:none) Escherichia coli CFT073, comple... 71 1e-10
CP000814_1144(CP000814|pid:none) Campylobacter jejuni subsp. jej... 71 1e-10
BX640420_122(BX640420|pid:none) Bordetella pertussis strain Toha... 71 1e-10
AF346498_2(AF346498|pid:none) Photorhabdus luminescens strain W1... 70 1e-10
CP001154_538(CP001154|pid:none) Laribacter hongkongensis HLHK9, ... 70 1e-10
CP001157_347(CP001157|pid:none) Azotobacter vinelandii DJ, compl... 70 2e-10
(P0AEZ1) RecName: Full=5,10-methylenetetrahydrofolate reductase;... 70 2e-10
CP000034_3487(CP000034|pid:none) Shigella dysenteriae Sd197, com... 70 2e-10
AE005174_4908(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 70 2e-10
CP001107_2129(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 70 2e-10
CP001618_237(CP001618|pid:none) Beutenbergia cavernae DSM 12333,... 70 2e-10
CU928145_4309(CU928145|pid:none) Escherichia coli 55989 chromoso... 70 2e-10
CP000949_487(CP000949|pid:none) Pseudomonas putida W619, complet... 70 2e-10
CP000699_2387(CP000699|pid:none) Sphingomonas wittichii RW1, com... 70 2e-10
(Q8KA62) RecName: Full=5,10-methylenetetrahydrofolate reductase;... 70 2e-10
CP000970_4217(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 70 2e-10
AP006725_91(AP006725|pid:none) Klebsiella pneumoniae NTUH-K2044 ... 69 3e-10
AP008957_3569(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 69 3e-10
CP000647_4194(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 69 3e-10
CP000025_1294(CP000025|pid:none) Campylobacter jejuni RM1221, co... 69 3e-10
(P11003) RecName: Full=5,10-methylenetetrahydrofolate reductase;... 69 4e-10
AP011115_833(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl... 69 4e-10
AE014613_3274(AE014613|pid:none) Salmonella enterica subsp. ente... 69 4e-10
BA000031_2763(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22... 69 4e-10
CR555306_1020(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 69 4e-10
CP000269_3194(CP000269|pid:none) Janthinobacterium sp. Marseille... 69 4e-10
X07689_1(X07689|pid:none) S. typhimurium LT2 metF gene for 5,10 ... 69 5e-10
BA000037_3006(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 69 5e-10
AM942759_2908(AM942759|pid:none) Proteus mirabilis strain HI4320... 69 5e-10
CP000712_4793(CP000712|pid:none) Pseudomonas putida F1, complete... 69 5e-10
AE004439_235(AE004439|pid:none) Pasteurella multocida subsp. mul... 69 5e-10
AE016795_1271(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos... 69 5e-10
AE015451_4909(AE015451|pid:none) Pseudomonas putida KT2440 compl... 69 5e-10
AY593479_21(AY593479|pid:none) Collimonas fungivorans fosmid CFU... 68 7e-10
CP000462_3801(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 68 9e-10
AE016853_4944(AE016853|pid:none) Pseudomonas syringae pv. tomato... 68 9e-10
CP000285_393(CP000285|pid:none) Chromohalobacter salexigens DSM ... 68 9e-10
AY658668_1(AY658668|pid:none) Synthetic construct Peudomonas aer... 67 1e-09
AM933172_3882(AM933172|pid:none) Salmonella enterica subsp. ente... 67 1e-09
CP000744_529(CP000744|pid:none) Pseudomonas aeruginosa PA7, comp... 67 1e-09
CU207211_2791(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 67 1e-09
CP001103_3496(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 67 1e-09
CP000089_183(CP000089|pid:none) Dechloromonas aromatica RCB, com... 67 1e-09
FP236842_152(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/96... 67 1e-09
CP001113_4142(CP001113|pid:none) Salmonella enterica subsp. ente... 67 2e-09
CP001172_1071(CP001172|pid:none) Acinetobacter baumannii AB307-0... 67 2e-09
BX950851_4217(BX950851|pid:none) Erwinia carotovora subsp. atros... 67 2e-09
CP000863_2537(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 67 2e-09
CP001321_1998(CP001321|pid:none) Haemophilus parasuis SH0165, co... 67 2e-09
AM420293_1678(AM420293|pid:none) Saccharopolyspora erythraea NRR... 67 2e-09
(Q89B13) RecName: Full=5,10-methylenetetrahydrofolate reductase;... 67 2e-09
FM178379_2761(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 67 2e-09
BA000035_2064(BA000035|pid:none) Corynebacterium efficiens YS-31... 67 2e-09
CP000058_439(CP000058|pid:none) Pseudomonas syringae pv. phaseol... 67 2e-09
CP000884_5898(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 66 3e-09
(Q9JZQ3) RecName: Full=5,10-methylenetetrahydrofolate reductase;... 66 3e-09
CP000768_432(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 66 3e-09
CP000020_2333(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 66 3e-09
AE004969_852(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, c... 66 3e-09
CP001341_2090(CP001341|pid:none) Arthrobacter chlorophenolicus A... 66 3e-09
CP001013_116(CP001013|pid:none) Leptothrix cholodnii SP-6, compl... 66 3e-09
CP000529_485(CP000529|pid:none) Polaromonas naphthalenivorans CJ... 66 3e-09
AL157959_1016(AL157959|pid:none) Neisseria meningitidis serogrou... 66 3e-09
CP000356_35(CP000356|pid:none) Sphingopyxis alaskensis RB2256, c... 66 3e-09
BA000036_2171(BA000036|pid:none) Corynebacterium glutamicum ATCC... 65 4e-09
CP000454_2345(CP000454|pid:none) Arthrobacter sp. FB24, complete... 65 6e-09
AC0015(AC0015) 5,10-methylenetetrahydrofolate reductase (FADH2) ... 65 6e-09
CR931997_737(CR931997|pid:none) Corynebacterium jeikeium K411 co... 65 6e-09
CP001010_1445(CP001010|pid:none) Polynucleobacter necessarius su... 65 6e-09
CQ795544_1(CQ795544|pid:none) Sequence 17 from Patent WO20040249... 65 8e-09
CP000267_643(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 65 8e-09
CP000248_3194(CP000248|pid:none) Novosphingobium aromaticivorans... 65 8e-09
CP000436_1138(CP000436|pid:none) Haemophilus somnus 129PT, compl... 64 1e-08
CP000672_191(CP000672|pid:none) Haemophilus influenzae PittGG, c... 64 1e-08
(P45208) RecName: Full=5,10-methylenetetrahydrofolate reductase;... 64 1e-08
CP000057_1475(CP000057|pid:none) Haemophilus influenzae 86-028NP... 64 1e-08
CP000238_145(CP000238|pid:none) Baumannia cicadellinicola str. H... 64 1e-08
CP000671_851(CP000671|pid:none) Haemophilus influenzae PittEE, c... 64 1e-08
CU468230_1117(CU468230|pid:none) Acinetobacter baumannii str. SD... 64 1e-08
CP001087_1658(CP001087|pid:none) Desulfobacterium autotrophicum ... 64 1e-08
AE014299_3941(AE014299|pid:none) Shewanella oneidensis MR-1, com... 64 1e-08
CP001600_3708(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 64 1e-08
AP009256_757(AP009256|pid:none) Bifidobacterium adolescentis ATC... 64 1e-08
CP000444_511(CP000444|pid:none) Shewanella sp. MR-7, complete ge... 64 2e-08
AM039952_842(AM039952|pid:none) Xanthomonas campestris pv. vesic... 64 2e-08
CP000655_1990(CP000655|pid:none) Polynucleobacter necessarius su... 64 2e-08
CP000563_3710(CP000563|pid:none) Shewanella baltica OS155, compl... 64 2e-08
AM743169_726(AM743169|pid:none) Stenotrophomonas maltophilia K27... 64 2e-08
AE008922_735(AE008922|pid:none) Xanthomonas campestris pv. campe... 64 2e-08
CP000076_5706(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 64 2e-08
AE008923_787(AE008923|pid:none) Xanthomonas axonopodis pv. citri... 64 2e-08
AM920689_3653(AM920689|pid:none) Xanthomonas campestris pv. camp... 64 2e-08
CP000503_3511(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 64 2e-08
AM942444_1218(AM942444|pid:none) Corynebacterium urealyticum DSM... 63 3e-08
CP000941_422(CP000941|pid:none) Xylella fastidiosa M12, complete... 63 3e-08
AE016828_1778(AE016828|pid:none) Coxiella burnetii RSA 493, comp... 63 3e-08
CU458896_1972(CU458896|pid:none) Mycobacterium abscessus chromos... 62 4e-08
CP000539_611(CP000539|pid:none) Acidovorax sp. JS42, complete ge... 62 4e-08
CP001392_590(CP001392|pid:none) Diaphorobacter sp. TPSY, complet... 62 4e-08
CP001020_1857(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co... 62 4e-08
CP001095_1401(CP001095|pid:none) Bifidobacterium longum subsp. i... 62 4e-08
CP000606_521(CP000606|pid:none) Shewanella loihica PV-4, complet... 62 5e-08
CP000512_3981(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 62 5e-08
CP000733_1948(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 62 5e-08
CP001213_1378(CP001213|pid:none) Bifidobacterium animalis subsp.... 62 5e-08
AE016827_787(AE016827|pid:none) Mannheimia succiniciproducens MB... 62 6e-08
AE014295_448(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 61 8e-08
CP000127_2579(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 61 1e-07
CP000931_623(CP000931|pid:none) Shewanella halifaxensis HAW-EB4,... 61 1e-07
CP000750_1166(CP000750|pid:none) Kineococcus radiotolerans SRS30... 61 1e-07
CP000821_4030(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 60 1e-07
CP000016_572(CP000016|pid:none) Candidatus Blochmannia pennsylva... 60 2e-07
CP000851_561(CP000851|pid:none) Shewanella pealeana ATCC 700345,... 60 2e-07
CP001019_1830(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co... 60 2e-07
CP000569_842(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 60 2e-07
CP000542_644(CP000542|pid:none) Verminephrobacter eiseniae EF01-... 60 2e-07
CP000316_4056(CP000316|pid:none) Polaromonas sp. JS666, complete... 59 5e-07
CP000859_2324(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 58 7e-07
AX064391_1(AX064391|pid:none) Sequence 673 from Patent WO0100843. 57 1e-06
CP001515_847(CP001515|pid:none) Bifidobacterium animalis subsp. ... 57 2e-06
AE008917_558(AE008917|pid:none) Brucella melitensis 16M chromoso... 56 4e-06
CP000383_1412(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 55 5e-06
CU207366_329(CU207366|pid:none) Gramella forsetii KT0803 complet... 55 5e-06
CP000425_1251(CP000425|pid:none) Lactococcus lactis subsp. cremo... 52 5e-05
FJ384795_24(FJ384795|pid:none) Uncultured bacterium fCS1 fosmid ... 52 7e-05
CP001033_552(CP001033|pid:none) Streptococcus pneumoniae CGSP14,... 52 7e-05
CP000423_600(CP000423|pid:none) Lactobacillus casei ATCC 334, co... 51 9e-05
CP000920_556(CP000920|pid:none) Streptococcus pneumoniae P1031, ... 51 9e-05
CP000879_311(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 51 9e-05
CP000139_1776(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 51 1e-04
CP000936_637(CP000936|pid:none) Streptococcus pneumoniae Hungary... 51 1e-04
CP000023_735(CP000023|pid:none) Streptococcus thermophilus LMG 1... 50 1e-04
CP000921_576(CP000921|pid:none) Streptococcus pneumoniae Taiwan1... 50 2e-04
AM406671_1208(AM406671|pid:none) Lactococcus lactis subsp. cremo... 50 2e-04
CP000419_682(CP000419|pid:none) Streptococcus thermophilus LMD-9... 50 2e-04
AP006841_4085(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 49 3e-04
AM889285_2575(AM889285|pid:none) Gluconacetobacter diazotrophicu... 49 4e-04
CP000387_397(CP000387|pid:none) Streptococcus sanguinis SK36, co... 48 7e-04
CP000725_308(CP000725|pid:none) Streptococcus gordonii str. Chal... 48 7e-04
CP000918_615(CP000918|pid:none) Streptococcus pneumoniae 70585, ... 47 0.001
AE015928_3819(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 47 0.002
S12496(S12496)hypothetical protein RAD1 5' region - yeast (Sacch... 46 0.003
AF429956_3(AF429956|pid:none) Uncultured bacterium RecA-like pro... 45 0.008
AP010656_254(AP010656|pid:none) Candidatus Azobacteroides pseudo... 44 0.014
AB090330_1(AB090330|pid:none) Clostridium sporogenes genes for 5... 44 0.014
AE008691_1679(AE008691|pid:none) Thermoanaerobacter tengcongensi... 41 0.090
CP001275_1001(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 41 0.090
FJ483538_1(FJ483538|pid:none) Corynebacterium ammoniagenes N5,N1... 41 0.12
CP000360_3422(CP000360|pid:none) Acidobacteria bacterium Ellin34... 41 0.12
CP001185_1075(CP001185|pid:none) Thermosipho africanus TCF52B, c... 40 0.20
AF404274_1(AF404274|pid:none) Mus musculus methylenetetrahydrofo... 40 0.26
CP000679_1105(CP000679|pid:none) Caldicellulosiruptor saccharoly... 39 0.45
CP001348_2414(CP001348|pid:none) Clostridium cellulolyticum H10,... 38 0.76
CP000923_1180(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 37 1.3
CP000771_1253(CP000771|pid:none) Fervidobacterium nodosum Rt17-B... 37 1.3
CP000252_1927(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 37 1.7
CP000148_497(CP000148|pid:none) Geobacter metallireducens GS-15,... 36 3.8
CP000812_1345(CP000812|pid:none) Thermotoga lettingae TMO, compl... 36 3.8
CP000698_700(CP000698|pid:none) Geobacter uraniireducens Rf4, co... 36 3.8
AF398930_3(AF398930|pid:none) Homo sapiens CLCN6 (CLCN6) gene, p... 35 4.9
CP000561_537(CP000561|pid:none) Pyrobaculum calidifontis JCM 115... 35 4.9
AF398930_4(AF398930|pid:none) Homo sapiens CLCN6 (CLCN6) gene, p... 35 4.9
CP000721_1809(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 35 4.9
CP000504_1693(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 35 4.9
CP000660_733(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351... 35 8.4

>(Q60HE5) RecName: Full=Methylenetetrahydrofolate reductase;
EC=1.5.1.20; &AB125182_1(AB125182|pid:none)
&AB174536_1(AB174536|pid:none)
Length = 656

Score = 124 bits (310), Expect(2) = 3e-55
Identities = 66/154 (42%), Positives = 86/154 (55%), Gaps = 7/154 (4%)
Frame = +2

Query: 431 RSYIARTGSWDEFPNGRWGDYRSPAFGDLSDYHLGGVXXXXXXXXXXXXXXXXXXDSVVV 610
+SYI RT WDEFPNGRWG+ SPAFG+L DY+L ++
Sbjct: 372 KSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYL--------------FYLKSKSPRELL 417

Query: 611 PNIYGDSPQSEQDVYNVFASYCSGNIKR-------LPWNDSPLSLESENIKEQLVFLNKN 769
++G+ SE+ V+ VF Y SG R LPWND PL+ E+ +KE+L+ +N+
Sbjct: 418 LKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQ 477

Query: 770 GFLTINSQPAINGLPSTDKQHGWGGKKWYCLQKS 871
G LTINSQP ING PS+D GWG Y QK+
Sbjct: 478 GILTINSQPNINGKPSSDPVVGWGPSGGYVFQKA 511

Score = 116 bits (291), Expect(2) = 3e-55
Identities = 60/122 (49%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Frame = +3

Query: 852 GIVYKKAYIEFFASPENTLKLIEYFKKCPM-ITYHAVNRKGDSKTNTKGT--NAVTWGIF 1022
G V++KAY+EFF S E L++ KK + + YH VN KG++ TN NAVTWGIF
Sbjct: 505 GYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIF 564

Query: 1023 PGKEIIQPTVVDHNSFMVWKDEAFALWEXXXXXXXXXXXXXXXLLDSMINNYYLINIVDN 1202
PG+EIIQPTVVD SFM WKDEAFALW ++ + +NY+L+N+VDN
Sbjct: 565 PGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDN 624

Query: 1203 NF 1208
+F
Sbjct: 625 DF 626

Score = 118 bits (295), Expect = 6e-25
Identities = 59/132 (44%), Positives = 84/132 (63%), Gaps = 4/132 (3%)
Frame = +2

Query: 26 KIIDKIQKKKESNTPFYSFEYFPPKTMEGVQNLYDRLGRMLLFEPLFIDITWGAGGSTSA 205
++ DK++++ ES ++S E+FPP+T EG NL R RM PLFID+TW G +
Sbjct: 44 RLRDKMRRRMESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLFIDVTWHPAGDPGS 103

Query: 206 ----LTLEIAEKAQNVCGLETMMHLTCTNMPVSEIIYALDKAKSTGIRNILALRGDPPRG 373
++ IA A N CGLET++H+TC + EI L KAK G++NI+ALRGD P G
Sbjct: 104 DKETSSMMIASTAVNYCGLETILHMTCCCQRLEEITGHLHKAKQLGLKNIMALRGD-PIG 162

Query: 374 EEWKKIEGGFAY 409
++W++ EGGF Y
Sbjct: 163 DQWEEEEGGFNY 174

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,213,557,939
Number of extensions: 46585513
Number of successful extensions: 125921
Number of sequences better than 10.0: 343
Number of HSP's gapped: 125570
Number of HSP's successfully gapped: 483
Length of query: 462
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 330
Effective length of database: 623,955,076
Effective search space: 205905175080
Effective search space used: 205905175080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.58 gvh: 0.55 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for Contig-U12403-1 is cyt

VS (DIR, S) 1
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0