Contig-U12399-1 |
Contig ID |
Contig-U12399-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1358 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
4712677 |
End point |
4711450 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U12399 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.30 |
Homology vs DNA |
Query= Contig-U12399-1 (Contig-U12399-1Q) /CSM_Contig/Contig-U12399-1Q.Seq.d (1368 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ437066) Dictyostelium discoideum cDNA clone:ddv33h02, 3' ... 1025 0.0 1 (BJ418536) Dictyostelium discoideum cDNA clone:ddv33h02, 5' ... 1001 0.0 1 (CP000049) Borrelia turicatae 91E135, complete genome. 36 0.005 20 (BH378861) AG-ND-169A24.TR ND-TAM Anopheles gambiae genomic ... 40 0.006 2 (BH162972) ENTSX27TR Entamoeba histolytica Sheared DNA Entam... 36 0.045 2 (AC168330) Strongylocentrotus purpuratus clone R3-58P5, WORK... 40 0.13 8 (EK583692) 1095522018812 Global-Ocean-Sampling_GS-32-01-01-1... 40 0.20 2 (AF022186) Cyanidium caldarium strain RK1 chloroplast, compl... 50 0.22 1 (AM486653) Vitis vinifera contig VV78X000436.15, whole genom... 36 0.31 4 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 34 0.71 13 (AL139337) Human DNA sequence *** SEQUENCING CANCELLED *** f... 42 0.74 7 (AC147497) Medicago truncatula chromosome 6 clone mth2-138p6... 40 0.79 7 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.83 13 (BX004784) Zebrafish DNA sequence from clone DKEY-82I7 in li... 48 0.89 1 (AL929172) Zebrafish DNA sequence from clone DKEYP-46C10 in ... 48 0.89 1 (AX356445) Sequence 79 from Patent WO0181622. 48 0.89 1 (AR552170) Sequence 7301 from patent US 6747137. 48 0.89 1 (AC005035) Homo sapiens BAC clone RP11-353P23 from 2, comple... 48 0.89 1 (AC157156) Bos taurus clone CH240-71B1, WORKING DRAFT SEQUEN... 48 0.89 1 (BZ037719) oeh82h05.b1 B.oleracea002 Brassica oleracea genom... 48 0.89 1 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 0.92 19 (EJ505668) 1095403701944 Global-Ocean-Sampling_GS-28-01-01-1... 40 1.00 3 (ER306815) 1092343758903 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.1 2 (CU179697) M.truncatula DNA sequence from clone MTH2-63I19 o... 32 1.2 8 (AC192443) Pan troglodytes BAC clone CH251-440J19 from chrom... 42 1.2 5 (ER315527) 1092344138862 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.2 2 (CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 34 1.2 11 (AE017263) Mesoplasma florum L1 complete genome. 32 1.3 21 (ES406146) MUT12-I14.x1d-t SHGC-MUT Mytilus californianus cD... 40 1.3 2 (AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 32 1.4 12 (AC209034) Populus trichocarpa clone POP003-C07, complete se... 42 1.4 4 (AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 32 1.4 12 (BX649388) Zebrafish DNA sequence from clone CH211-225P5 in ... 40 1.5 6 (AC202480) Medicago truncatula clone mth2-166i6, WORKING DRA... 34 1.6 9 (CU329672) Schizosaccharomyces pombe chromosome III. 44 1.8 23 (CP000013) Borrelia garinii PBi, complete genome. 34 1.8 18 (CQ585716) Sequence 13474 from Patent WO0171042. 42 1.8 2 (CT573399) Zebrafish DNA sequence from clone DKEYP-51B9 in l... 32 1.9 2 (BX276114) Zebrafish DNA sequence from clone CH211-176L11 in... 42 1.9 5 (AC087886) Homo sapiens 12 BAC RP11-578A9 (Roswell Park Canc... 40 2.0 6 (AM468507) Vitis vinifera, whole genome shotgun sequence, co... 34 2.0 2 (AM489268) Vitis vinifera contig VV78X113159.9, whole genome... 38 2.1 4 (AL359081) Human DNA sequence from clone RP11-541F9 on chrom... 36 2.1 6 (EU306659) Medicago truncatula zinc finger protein, GH1 prot... 34 2.1 8 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 2.1 12 (AC129406) Rattus norvegicus clone CH230-507M10, *** SEQUENC... 34 2.3 8 (EJ525241) 1092955181009 Global-Ocean-Sampling_GS-29-01-01-1... 36 2.4 2 (EJ555680) 1092959496562 Global-Ocean-Sampling_GS-29-01-01-1... 36 2.4 2 (AM051970) Dasytricha ruminantium EST, clone Day_D09. 36 2.4 2 (AC165540) Bos taurus clone CH240-168P15, WORKING DRAFT SEQU... 42 2.4 5 (AC178175) Strongylocentrotus purpuratus clone R3-3082B11, W... 36 2.5 8 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 32 2.6 9 (EJ167578) 1092344071373 Global-Ocean-Sampling_GS-27-01-01-1... 38 2.7 3 (CU302328) Medicago truncatula chromosome 5 clone mth4-35c1,... 36 2.8 8 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 3.0 11 (AC186379) Zea mays chromosome 2 clone CH201-323I15; ZMMBBc0... 40 3.1 2 (AC181264) Strongylocentrotus purpuratus clone R3-4012D7, WO... 36 3.4 6 (AC166745) Medicago truncatula clone mth2-193e13, complete s... 36 3.4 5 (CT572991) Mouse DNA sequence from clone RP24-434I23 on chro... 46 3.5 1 (AL731647) Mouse DNA sequence from clone RP23-226L1 on chrom... 46 3.5 1 (AC165233) Mus musculus chromosome 8, clone RP23-307O2, comp... 46 3.5 1 (AC159629) Mus musculus BAC clone RP24-178C15 from chromosom... 46 3.5 1 (AC123843) Mus musculus BAC clone RP23-407D18 from chromosom... 46 3.5 1 (AP008209) Oryza sativa (japonica cultivar-group) genomic DN... 46 3.5 1 (AC174339) Medicago truncatula clone mth2-161b15, complete s... 46 3.5 1 (AC091532) Oryza sativa chromosome 3 BAC OSJNBa0078A17 genom... 46 3.5 1 (AC115578) Dictyostelium discoideum chromosome 2 map complem... 46 3.5 1 (AL356018) Human chromosome 14 DNA sequence BAC C-2277K2 of ... 46 3.5 1 (AL137918) Human chromosome 14 DNA sequence BAC R-442G21 of ... 46 3.5 1 (AC105917) Homo sapiens BAC clone RP11-395C17 from 4, comple... 46 3.5 1 (AC119023) Rattus norvegicus clone CH230-429P17, *** SEQUENC... 46 3.5 1 (AC202479) Medicago truncatula clone mth2-164l8, WORKING DRA... 46 3.5 1 (AC194575) Macaca mulatta clone CH250-319M11, WORKING DRAFT ... 46 3.5 1 (AC025602) Homo sapiens chromosome 16 clone RP11-560G2 map 1... 46 3.5 1 (AC021330) Homo sapiens clone RP11-24D20, WORKING DRAFT SEQU... 46 3.5 1 (AC013710) Homo sapiens clone RP11-22M9, WORKING DRAFT SEQUE... 46 3.5 1 (AZ526518) 256PbD05 Pb MBN #21 Plasmodium berghei genomic 3'... 46 3.5 1 (ET822491) CHO_OF761xd22f1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.5 1 (EJ342540) 1092963526280 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.5 1 (DE582395) Bombyx mori genomic DNA, Fosmid clone:GBMFno232_k... 46 3.5 1 (DE343777) Bombyx mori genomic DNA, BAC clone:BET_044_B21. 46 3.5 1 (DE342801) Bombyx mori genomic DNA, BAC clone:BET_041_E20. 46 3.5 1 (DE342782) Bombyx mori genomic DNA, BAC clone:BET_041_D23. 46 3.5 1 (DY296817) IC0AAA91AB08RM1 CitNFL Citrus clementina cDNA 5',... 46 3.5 1 (DY292135) IC0AAA7AE03RM1 CitNFL Citrus clementina cDNA 5', ... 46 3.5 1 (AU282716) Molgula tectiformis mRNA, clone:MT06B1A05T, 3' end. 46 3.5 1 (CJ420475) Molgula tectiformis cDNA, larva clone:mtlv004i09,... 46 3.5 1 (CJ420365) Molgula tectiformis cDNA, larva clone:mtlv004d07,... 46 3.5 1 (BY269705) Mus musculus visual cortex cDNA, RIKEN full-lengt... 46 3.5 1 (BM086335) sah38g01.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 46 3.5 1 (W49680) zc43b11.r1 Soares_senescent_fibroblasts_NbHSF Homo ... 46 3.5 1 (EY810914) PT11-C1-900-012-G04-CT.F Poncirus trifoliata leaf... 46 3.5 1 (EY667342) CS00-C1-102-030-C04-CT.F Sweet orange leaf, infec... 46 3.5 1 (EY197898) BC_009_21 Cotton ovule and fiber 3-5 days post an... 46 3.5 1 (EX168431) F05_R-18_044 Cotton 1-14 day post anthesis Lambda... 46 3.5 1 (CR543861) Acinetobacter sp. ADP1 complete genome. 46 3.5 1 (BA000028) Oceanobacillus iheyensis HTE831 DNA, complete gen... 46 3.5 1 (Y14674) Plasmodium falciparum mRNA for gamma-glutamylcystei... 36 3.5 3 (AC215647) Populus trichocarpa clone POP035-N09, complete se... 44 3.6 6 (AK162330) Mus musculus adult male cecum cDNA, RIKEN full-le... 38 3.6 2
>(BJ437066) Dictyostelium discoideum cDNA clone:ddv33h02, 3' end, single read. Length = 820
Score = 1025 bits (517), Expect = 0.0 Identities = 520/520 (100%) Strand = Plus / Minus
Query: 550 cgtcacgtaatttggaagctttatgaagagatcaccattggcttgaaaagaacgatttca 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 820 cgtcacgtaatttggaagctttatgaagagatcaccattggcttgaaaagaacgatttca 761
Query: 610 attacanccaaaagagaatcatgcaagtcacactatttggcgaattgtataatgcatgtt 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 760 attacanccaaaagagaatcatgcaagtcacactatttggcgaattgtataatgcatgtt 701
Query: 670 tattggagactaatcatatctttgatttactcattggtgcactcgaatttgggtatacca 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 tattggagactaatcatatctttgatttactcattggtgcactcgaatttgggtatacca 641
Query: 730 ctagtcatctcttcccttccaatatctttagagagagagatctcctaaagagtagaccaa 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 ctagtcatctcttcccttccaatatctttagagagagagatctcctaaagagtagaccaa 581
Query: 790 aaccaaatttggatgatttcgacccaatcaatgattgcttcagagttaggttcatttcca 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 aaccaaatttggatgatttcgacccaatcaatgattgcttcagagttaggttcatttcca 521
Query: 850 ctttacttttagtttgtaaagattgtttccctttagaagatattgaacaacatttaaaac 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 ctttacttttagtttgtaaagattgtttccctttagaagatattgaacaacatttaaaac 461
Query: 910 catatttagtattctttcaacgttatactctaacaaaattattacctctagaaattgaat 969 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 catatttagtattctttcaacgttatactctaacaaaattattacctctagaaattgaat 401
Query: 970 ttatgattaccgattgtttacaaattgtaccagatattaaagtttttaaaacttgggaag 1029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 ttatgattaccgattgtttacaaattgtaccagatattaaagtttttaaaacttgggaag 341
Query: 1030 aagcaaatgatgaatgtatgattttatcaggtattacacc 1069 |||||||||||||||||||||||||||||||||||||||| Sbjct: 340 aagcaaatgatgaatgtatgattttatcaggtattacacc 301
Score = 208 bits (105), Expect(2) = 2e-79 Identities = 105/105 (100%) Strand = Plus / Minus
Query: 1264 ttattattgaaagtgaacaagatgttttaaatattattcaagataatgatgaagatgata 1323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106 ttattattgaaagtgaacaagatgttttaaatattattcaagataatgatgaagatgata 47
Query: 1324 ttagtctgaggaagatattcttaaagaatttaacaaatgttaaca 1368 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46 ttagtctgaggaagatattcttaaagaatttaacaaatgttaaca 2
Score = 121 bits (61), Expect(2) = 2e-79 Identities = 61/61 (100%) Strand = Plus / Minus
Query: 1166 accttcatctatgtcttctacttctccacaactttcttcttcttcaccattaccattaca 1225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 accttcatctatgtcttctacttctccacaactttcttcttcttcaccattaccattaca 145
Query: 1226 g 1226 | Sbjct: 144 g 144
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,632,380,212 Number of extensions: 126183787 Number of successful extensions: 9768112 Number of sequences better than 10.0: 169 Length of query: 1368 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1344 Effective length of database: 97,308,875,965 Effective search space: 130783129296960 Effective search space used: 130783129296960 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 3 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |