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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12395-1
Contig ID Contig-U12395-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Contig-U12395-1Q.Seq.d
AGATTTCTAAAAATAAAAAATGAAAGTATTATTTTATTGTTGTATATTAT
TATTATTTGCTAATTTATTAATATTGGTTACTAGTGTAAAATTAAAAGAT
GGCGAATATGTTTGTTCTTTTAATTTATTTTCAAAACTACATATGTTGGG
GAATGTAGCTACTGTGGGTGATTATTATGATTTTTGTAATTCAGGTAGAT
TGACTTGTAGTAATGATACTGCCACATATTTGAATTTAAATACAAATTTT
ACTTCAATTGTTTATGATGACATATCATGTTATACAAGTTTGAGTAATTT
GGACTTTACAAATGTAATTTTAACTCCAAATATTATTGGAACTCCACCTC
GAGTTGGTGTTACATCATATAAAATTAATTTTTATAGTTGCTATGATTTA
GGTTTTTATGATGTAATATCTCTTCCAACAAGAGAAGTTCATATTTTAAA
TTTAATAGAACCATTAAAAACAAATATAACATTATCATCACTATCTTTAG
TAAATAATATTGAAATGTATGAATACTATAGCCCACTTAAATCTTTTCTT
TTCCCATATATTATAAATGATTTAAAACACAATATTCCACTTAATGTTAT
GTTTTTATATGTTTCAAACGTACCAAATTTTACATATATAAACCNNNNNN
NNN----------NNNNNNNNNNATACAGTTTTAAATCATCCACTTGTAA
ATAATTGGAATATTGATGAAAATGAATCAACAAAACAAGGTCAATATGCA
TTTTCTCAATTATTAGATACAAATAAAAATTGTAAAGTAGTTACAATTAT
TGAAGAAGTTTCAAAGGATACTCAATATTCATTTGCAGGTGTTAATTTCT
TAGTATTTGCAAATTCTTTAAAATTAACTATATCAATTAATAACTATACC
TTTATTAGTTCATTAAATTCATTACAACTTCAAATTGAATCATTGGTTAG
TATTTTACCAACAACAACTACTACAAATAAAGAAAATAGTTGTAAAAATG
ATGAATCATCATCAAATACTACAAGTATTGATACATCTGGAATTACAACA
GATACAATATTGAATTATATTACAATTGAAAAAAATAATAAAATCTTTAC
AGGTAGATTCATAAATAAATTATTATCAGATGGTAGACCAACATTTTTCT
CATCCCAAGTAGTAAATAGAAATAATGAATCCTTAATAATTGGTTTAGAT
CTTTCTCATTGTTCGAATTGTGTTATTGACCCAGATTTCTCAGTATTGGT
TTCAAGTTCATTTAAAACAACAACGACAACAGATTGTGAGATAAACAACA
AAAATAATTGGAAAATCCCTGTTGCTGTAGTAATTAGTGTTGTTGGATTT
TCAATGATTGTTTTAATATCAATGATAATTTTTAAG
Gap gap included
Contig length 1376
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3431190
End point 3432547
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U12395
List of clone(s) 

est1=VHB220F,1,644
est2=VHB220Z,645,1358
Translated Amino Acid sequence 
df*k*KMKVLFYCCILLLFANLLILVTSVKLKDGEYVCSFNLFSKLHMLGNVATVGDYYD
FCNSGRLTCSNDTATYLNLNTNFTSIVYDDISCYTSLSNLDFTNVILTPNIIGTPPRVGV
TSYKINFYSCYDLGFYDVISLPTREVHILNLIEPLKTNITLSSLSLVNNIEMYEYYSPLK
SFLFPYIINDLKHNIPLNVMFLYVSNVPNFTYINXXX---

---XXXXTVLNHPLVNNWNIDENESTKQGQYAFSQLLDTNKNCKVVTIIEEVSKDTQYSF
AGVNFLVFANSLKLTISINNYTFISSLNSLQLQIESLVSILPTTTTTNKENSCKNDESSS
NTTSIDTSGITTDTILNYITIEKNNKIFTGRFINKLLSDGRPTFFSSQVVNRNNESLIIG
LDLSHCSNCVIDPDFSVLVSSSFKTTTTTDCEINNKNNWKIPVAVVISVVGFSMIVLISM
IIFK
Translated Amino Acid sequence (All Frames) 
Frame A:
rflkiknesiilllyiiiic*finigy*ckikrwriclff*fifkttyvgecsycg*ll*
fl*fr*idl***ychifefkykfyfncl**himlykfe*fglykcnfnskyywnstsswc
yii*n*fl*ll*frfl*cnissnkrssyfkfnrtiknkyniiitifsk*y*nv*il*pt*
ifsfpiyyk*fktqyst*cyvficfkrtkfyiykpxx---

---XXXXTVLNHPLVNNWNIDENESTKQGQYAFSQLLDTNKNCKVVTIIEEVSKDTQYSF
AGVNFLVFANSLKLTISINNYTFISSLNSLQLQIESLVSILPTTTTTNKENSCKNDESSS
NTTSIDTSGITTDTILNYITIEKNNKIFTGRFINKLLSDGRPTFFSSQVVNRNNESLIIG
LDLSHCSNCVIDPDFSVLVSSSFKTTTTTDCEINNKNNWKIPVAVVISVVGFSMIVLISM
IIFK

Frame B:
df*k*KMKVLFYCCILLLFANLLILVTSVKLKDGEYVCSFNLFSKLHMLGNVATVGDYYD
FCNSGRLTCSNDTATYLNLNTNFTSIVYDDISCYTSLSNLDFTNVILTPNIIGTPPRVGV
TSYKINFYSCYDLGFYDVISLPTREVHILNLIEPLKTNITLSSLSLVNNIEMYEYYSPLK
SFLFPYIINDLKHNIPLNVMFLYVSNVPNFTYINXXX---

---xxxiqf*iihl*iigilmkmnqqnkvnmhflny*iqikivk*lqllkkfqrilnihl
qvlis*ylqil*n*lyqlitipllvh*ihynfklnhwlvfyqqqllqikkivvkmmnhhq
ilqvlihlelqqiqy*iilqlkkiikslqvds*inyyqmvdqhfshpk**ieimnp**lv
*iflivrivlltqisqywfqvhlkqqrqqivr*ttkiigkslll**lvlldfq*lf*yq*
*fl

Frame C:
isknkk*kyyfivvyyyylliy*ywllv*n*kmanmfvlliyfqnyicwgm*llwviimi
fviqvd*lvvmilphi*i*iqillqlfmmtyhviqv*viwtlqm*f*lqillelhlelvl
hhiklifivami*vfmm*ylfqqekfif*i**nh*kqi*hyhhyl**iilkcmntiahln
lffshil*mi*ntifhlmlcfymfqtyqilhi*txxx---

---xxxysfksstck*ley**k*inktrsicifsiiryk*kl*ssyny*rsfkgysific
rc*flsickffkinyin**lyly*fikfittsn*iig*yftnnnyyk*rk*l*k**iiik
yyky*yiwnynrynielyyn*kk**nlyr*ihk*iiirw*tniflipssk*k**ilnnwf
rsfslfelcy*prflsigfkfi*nnndnrl*dkqqk*lenpcccsn*ccwifndcfnind
nf*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12395-1 (Contig-U12395-1Q)
/CSM_Contig/Contig-U12395-1Q.Seq.d
         (1386 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Conti...  1372  0.0
Contig-U11914-1 (Contig-U11914-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U00451-1 (Contig-U00451-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U12323-1 (Contig-U12323-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U10762-1 (Contig-U10762-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U08146-1 (Contig-U08146-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U14250-1 (Contig-U14250-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11354-1 (Contig-U11354-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U00318-1 (Contig-U00318-1Q) /CSM_Contig/Conti...    40  0.006

>Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Contig-U12395-1Q.Seq.d
          Length = 1386

 Score = 1372 bits (692), Expect = 0.0
 Identities = 706/713 (99%)
 Strand = Plus / Plus

                                                                        
Query: 674  atacagttttaaatcatccacttgtaaataattggaatattgatgaaaatgaatcaacaa 733
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  atacagttttaaatcatccacttgtaaataattggaatattgatgaaaatgaatcaacaa 733

                                                                        
Query: 734  aacaaggtcaatatgcattttctcaattattagatacaaataaaaattgtaaagtagtta 793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  aacaaggtcaatatgcattttctcaattattagatacaaataaaaattgtaaagtagtta 793

                                                                        
Query: 794  caattattgaagaagtttcaaaggatactcaatattcatttgcaggtgttaatttcttag 853
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  caattattgaagaagtttcaaaggatactcaatattcatttgcaggtgttaatttcttag 853

                                                                        
Query: 854  tatttgcaaattctttaaaattaactatatcaattaataactatacctttattagttcat 913
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  tatttgcaaattctttaaaattaactatatcaattaataactatacctttattagttcat 913

                                                                        
Query: 914  taaattcattacaacttcaaattgaatcattggttagtattttaccaacaacaactacta 973
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  taaattcattacaacttcaaattgaatcattggttagtattttaccaacaacaactacta 973

                                                                        
Query: 974  caaataaagaaaatagttgtaaaaatgatgaatcatcatcaaatactacaagtattgata 1033
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  caaataaagaaaatagttgtaaaaatgatgaatcatcatcaaatactacaagtattgata 1033

                                                                        
Query: 1034 catctggaattacaacagatacaatattgaattatattacaattgnnnnnnntaataaaa 1093
            |||||||||||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 1034 catctggaattacaacagatacaatattgaattatattacaattgaaaaaaataataaaa 1093

                                                                        
Query: 1094 tctttacaggtagattcataaataaattattatcagatggtagaccaacatttttctcat 1153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 tctttacaggtagattcataaataaattattatcagatggtagaccaacatttttctcat 1153

                                                                        
Query: 1154 cccaagtagtaaatagaaataatgaatccttaataattggtttagatctttctcattgtt 1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 cccaagtagtaaatagaaataatgaatccttaataattggtttagatctttctcattgtt 1213

                                                                        
Query: 1214 cgaattgtgttattgacccagatttctcagtattggtttcaagttcatttaaaacaacaa 1273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 cgaattgtgttattgacccagatttctcagtattggtttcaagttcatttaaaacaacaa 1273

                                                                        
Query: 1274 cgacaacagattgtgagataaacaacaaaaataattggaaaatccctgttgctgtagtaa 1333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 cgacaacagattgtgagataaacaacaaaaataattggaaaatccctgttgctgtagtaa 1333

                                                                 
Query: 1334 ttagtgttgttggattttcaatgattgttttaatatcaatgataatttttaag 1386
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ttagtgttgttggattttcaatgattgttttaatatcaatgataatttttaag 1386


 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 77  gttactagtgtaaaattaaaagatggcgaatatgtttgttcttttaatttattttcaaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  gttactagtgtaaaattaaaagatggcgaatatgtttgttcttttaatttattttcaaaa 136

                                                                       
Query: 137 ctacatatgttggggaatgtagctactgtgggtgattattatgatttttgtaattcaggt 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ctacatatgttggggaatgtagctactgtgggtgattattatgatttttgtaattcaggt 196

                                                                       
Query: 197 agattgacttgtagtaatgatactgccacatatttgaatttaaatacaaattttacttca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agattgacttgtagtaatgatactgccacatatttgaatttaaatacaaattttacttca 256

                                                                       
Query: 257 attgtttatgatgacatatcatgttatacaagtttgagtaatttggactttacaaatgta 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 attgtttatgatgacatatcatgttatacaagtttgagtaatttggactttacaaatgta 316

                                                                       
Query: 317 attttaactccaaatattattggaactccacctcgagttggtgttacatcatataaaatt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attttaactccaaatattattggaactccacctcgagttggtgttacatcatataaaatt 376

                                                                       
Query: 377 aatttttatagttgctatgatttaggtttttatgatgtaatatctcttccaacaagagaa 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatttttatagttgctatgatttaggtttttatgatgtaatatctcttccaacaagagaa 436

                                                                       
Query: 437 gttcatattttaaatttaatagaaccattaaaaacaaatataacattatcatcactatct 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gttcatattttaaatttaatagaaccattaaaaacaaatataacattatcatcactatct 496

                                                                       
Query: 497 ttagtaaataatattgaaatgtatgaatactatagcccacttaaatcttttcttttccca 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttagtaaataatattgaaatgtatgaatactatagcccacttaaatcttttcttttccca 556

                                                                       
Query: 557 tatattataaatgatttaaaacacaatattccacttaatgttatgtttttatatgtttca 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatattataaatgatttaaaacacaatattccacttaatgttatgtttttatatgtttca 616

                                       
Query: 617 aacgtaccaaattttacatatataaacc 644
           ||||||||||||||||||||||||||||
Sbjct: 617 aacgtaccaaattttacatatataaacc 644


>Contig-U11914-1 (Contig-U11914-1Q) /CSM_Contig/Contig-U11914-1Q.Seq.d
          Length = 1451

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                          
Query: 1086 taataaaatctttacaggtagattcataaataaattattatcagat 1131
            ||||||||| ||| | ||||||||  ||||||||||||||||||||
Sbjct: 992  taataaaatattttctggtagatttttaaataaattattatcagat 1037


>Contig-U00451-1 (Contig-U00451-1Q) /CSM_Contig/Contig-U00451-1Q.Seq.d
          Length = 1253

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 755 ctcaattattagatacaaataaaa 778
           ||||||||||||||||||||||||
Sbjct: 786 ctcaattattagatacaaataaaa 809


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,746
Number of Sequences: 6905
Number of extensions: 30746
Number of successful extensions: 4045
Number of sequences better than 10.0: 514
length of query: 1386
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1370
effective length of database: 5,564,391
effective search space: 7623215670
effective search space used: 7623215670
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Contig-U12395-1Q.Seq.d
         (1386 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ418534) Dictyostelium discoideum cDNA clone:ddv33g06, 5' ...  1126   0.0    1
(BJ437064) Dictyostelium discoideum cDNA clone:ddv33g06, 3' ...   803   0.0    2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    46   1e-10  16
(BJ443593) Dictyostelium discoideum cDNA clone:ddv53n12, 3' ...    48   3e-07  3
(BJ443720) Dictyostelium discoideum cDNA clone:ddv53k20, 3' ...    48   4e-07  3
(BJ441678) Dictyostelium discoideum cDNA clone:ddv47a15, 3' ...    48   4e-07  3
(BJ437950) Dictyostelium discoideum cDNA clone:ddv35k20, 3' ...    48   4e-07  3
(BJ442093) Dictyostelium discoideum cDNA clone:ddv48g19, 3' ...    48   5e-07  3
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    48   9e-07  12
(BJ405281) Dictyostelium discoideum cDNA clone:dds31m05, 3' ...    64   6e-06  2
(AL844507) Plasmodium falciparum chromosome 8.                     38   2e-05  20
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    34   2e-05  17
(BX248583) Blochmannia floridanus complete genome.                 36   3e-05  21
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    62   6e-05  1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    62   6e-05  1
(AL844506) Plasmodium falciparum chromosome  7.                    38   8e-05  16
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   2e-04  17
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   7e-04  21
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   8e-04  15
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    38   0.001  14
(AC229698) Medicago truncatula clone mth2-15c11, WORKING DRA...    50   0.002  6
(AL035476) Plasmodium falciparum MAL4P3.                           34   0.002  17
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   0.002  22
(AC119145) Rattus norvegicus chromosome 1 clone RP32-4G14 ma...    40   0.003  5
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   0.003  17
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   0.003  15
(AF474339) Dictyostelium discoideum ABC transporter ABCC.7 (...    56   0.004  1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    40   0.004  17
(AL844509) Plasmodium falciparum chromosome 13.                    42   0.004  19
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.005  17
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    38   0.006  12
(BD061520) Genome DNA of symbiotic bacteria of aphid.              32   0.006  20
(AR409405) Sequence 1 from patent US 6632935.                      32   0.006  20
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    32   0.006  20
(CP000382) Clostridium novyi NT, complete genome.                  34   0.007  23
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.007  20
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.011  19
(AY689436) Deerpox virus W-848-83, complete genome.                32   0.011  14
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   0.012  12
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    38   0.012  9
(AC125667) Rattus norvegicus clone CH230-21C17, WORKING DRAF...    40   0.014  5
(AE017263) Mesoplasma florum L1 complete genome.                   36   0.015  22
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    34   0.022  21
(CP000398) Borrelia afzelii PKo plasmid lp34, complete seque...    42   0.024  5
(CP000742) Methanococcus vannielii SB, complete genome.            34   0.025  22
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   0.030  19
(AC226874) Monodelphis domestica clone VMRC18-753I4, WORKING...    42   0.036  2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    34   0.041  14
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.043  20
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.044  11
(AC041039) Homo sapiens chromosome 8, clone RP11-273P3, comp...    36   0.044  8
(BJ438706) Dictyostelium discoideum cDNA clone:ddv38a09, 3' ...    40   0.049  2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   0.053  10
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN...    40   0.056  17
(AC187165) Glycine max clone gmw2-91b16, complete sequence.        40   0.057  8
(AU038127) Dictyostelium discoideum slug cDNA, clone SSH307.       52   0.057  1
(AU037492) Dictyostelium discoideum slug cDNA, clone SSD703.       52   0.057  1
(BJ443263) Dictyostelium discoideum cDNA clone:ddv52l08, 3' ...    52   0.057  1
(BJ383498) Dictyostelium discoideum cDNA clone:ddc53b10, 3' ...    52   0.057  1
(AY689437) Deerpox virus W-1170-84, complete genome.               32   0.059  13
(AM422018) Candidatus Phytoplasma australiense complete genome.    32   0.060  23
(AX356479) Sequence 113 from Patent WO0181622.                     36   0.067  4
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   0.068  20
(BJ445154) Dictyostelium discoideum cDNA clone:ddv58i16, 3' ...    40   0.069  2
(AC210380) Populus trichocarpa clone ACSB2121-B05, complete ...    34   0.070  7
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    36   0.071  11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.071  14
(BJ434055) Dictyostelium discoideum cDNA clone:ddv23c22, 3' ...    40   0.072  2
(BJ354275) Dictyostelium discoideum cDNA clone:dda53i02, 3' ...    40   0.072  2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    42   0.072  11
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   0.074  15
(BJ356193) Dictyostelium discoideum cDNA clone:dda59f15, 3' ...    40   0.074  2
(ED673596) GM_WBb0003D14.r GM_WBb Glycine max genomic clone ...    40   0.075  2
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   0.079  18
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g...    34   0.083  25
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    30   0.085  18
(DD010735) Diagnosis of known genetic Parameters within the ...    34   0.085  15
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.088  16
(FK803959) HTAM-aaa30g03.g1 Heterorhabditis_bacteriophora_ES...    38   0.097  3
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.10   12
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.11   17
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.11   12
(AX347077) Sequence 2148 from Patent WO0200928.                    36   0.11   11
(AC090466) Homo sapiens chromosome 8, clone RP11-619O19, com...    36   0.12   8
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.12   15
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    40   0.12   18
(FK808226) HTAM-aaa41a07.g1 Heterorhabditis_bacteriophora_ES...    38   0.13   3
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.13   12
(FK801015) HTAM-aaa58h12.g1 Heterorhabditis_bacteriophora_ES...    38   0.13   3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    38   0.14   13
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    36   0.14   16
(AP007314) Lotus japonicus genomic DNA, chromosome 1, clone:...    36   0.18   8
(AX344559) Sequence 10 from Patent WO0200932.                      32   0.18   15
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    32   0.18   14
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       32   0.19   16
(AL732441) Mouse DNA sequence from clone RP23-142N2 on chrom...    38   0.19   9
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   0.20   13
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    34   0.20   10
(DD061484) Methods and nucleic acids for the analysis of  he...    34   0.21   6
(AX599046) Sequence 386 from Patent WO02077272.                    34   0.21   6

>(BJ418534) Dictyostelium discoideum cDNA clone:ddv33g06, 5' end,
           single read.
          Length = 644

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus


Query: 77  gttactagtgtaaaattaaaagatggcgaatatgtttgttcttttaatttattttcaaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  gttactagtgtaaaattaaaagatggcgaatatgtttgttcttttaatttattttcaaaa 136


Query: 137 ctacatatgttggggaatgtagctactgtgggtgattattatgatttttgtaattcaggt 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ctacatatgttggggaatgtagctactgtgggtgattattatgatttttgtaattcaggt 196


Query: 197 agattgacttgtagtaatgatactgccacatatttgaatttaaatacaaattttacttca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agattgacttgtagtaatgatactgccacatatttgaatttaaatacaaattttacttca 256


Query: 257 attgtttatgatgacatatcatgttatacaagtttgagtaatttggactttacaaatgta 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 attgtttatgatgacatatcatgttatacaagtttgagtaatttggactttacaaatgta 316


Query: 317 attttaactccaaatattattggaactccacctcgagttggtgttacatcatataaaatt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attttaactccaaatattattggaactccacctcgagttggtgttacatcatataaaatt 376


Query: 377 aatttttatagttgctatgatttaggtttttatgatgtaatatctcttccaacaagagaa 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatttttatagttgctatgatttaggtttttatgatgtaatatctcttccaacaagagaa 436


Query: 437 gttcatattttaaatttaatagaaccattaaaaacaaatataacattatcatcactatct 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gttcatattttaaatttaatagaaccattaaaaacaaatataacattatcatcactatct 496


Query: 497 ttagtaaataatattgaaatgtatgaatactatagcccacttaaatcttttcttttccca 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttagtaaataatattgaaatgtatgaatactatagcccacttaaatcttttcttttccca 556


Query: 557 tatattataaatgatttaaaacacaatattccacttaatgttatgtttttatatgtttca 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatattataaatgatttaaaacacaatattccacttaatgttatgtttttatatgtttca 616


Query: 617 aacgtaccaaattttacatatataaacc 644
           ||||||||||||||||||||||||||||
Sbjct: 617 aacgtaccaaattttacatatataaacc 644

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,927,111,882
Number of extensions: 132352872
Number of successful extensions: 12050572
Number of sequences better than 10.0: 482
Length of query: 1386
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1362
Effective length of database: 97,308,875,965
Effective search space: 132534689064330
Effective search space used: 132534689064330
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Contig-U12395-1Q.Seq.d
         (1386 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   172   3e-41
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...   168   5e-40
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...   162   2e-38
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...   161   5e-38
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...   159   2e-37
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...   154   7e-36
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...   153   2e-35
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...   153   2e-35
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...   152   2e-35
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...   150   8e-35
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...   147   1e-33
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...   146   2e-33
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso...   139   2e-31
AC117075_65(AC117075|pid:none) Dictyostelium discoideum chromoso...   117   8e-25
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso...    70   2e-10
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso...    67   2e-09
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso...    64   1e-08
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...    64   1e-08
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...    64   1e-08
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    63   2e-08
AC115605_7(AC115605|pid:none) Dictyostelium discoideum chromosom...    59   5e-07
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...    57   2e-06
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    57   2e-06
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...    55   6e-06
AC117075_42(AC117075|pid:none) Dictyostelium discoideum chromoso...    53   6e-06
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    53   3e-05
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso...    53   3e-05
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...    52   5e-05
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso...    47   0.002
AF295379_1(AF295379|pid:none) Candida albicans adenylyl cyclase ...    37   1.3
EF506945_20(EF506945|pid:none) Leptosira terrestris UTEX 333 chl...    36   3.8
CP000946_2137(CP000946|pid:none) Escherichia coli ATCC 8739, com...    35   4.9
CP000800_1573(CP000800|pid:none) Escherichia coli E24377A, compl...    35   4.9

>AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromosome 2
            map 5201047-5455781 strain AX4, complete sequence.
          Length = 634

 Score =  172 bits (436), Expect = 3e-41
 Identities = 100/242 (41%), Positives = 141/242 (58%), Gaps = 5/242 (2%)
 Frame = +1

Query: 676  TVLNHPLVNNWNIDENESTKQGQ----YAFSQLLDTNKNCKVVTIIEEV-SKDTQYSFAG 840
            TV    L N WN   N +           FSQ + +N +C +   IEEV  K+  YSFAG
Sbjct: 381  TVNEFLLSNKWNKTNNNNNTNNDNNRIVVFSQFI-SNASCTIEYSIEEVIGKNKNYSFAG 439

Query: 841  VNFLVFANSLKLTISINNYTFISSLNSLQLQIESLVSILPTTTTTNKENSCKNXXXXXXX 1020
            VNF +   SLKLT+SI NYT+ S+LNS+QL+I+S  S+     + N  N  KN
Sbjct: 440  VNFTLSPGSLKLTVSIQNYTYHSTLNSIQLRIKS--SLGDYNNSNNNSNGNKNCNAKKLD 497

Query: 1021 XXXXXXXXXXXXXLNYITIEKNNKIFTGRFINKLLSDGRPTFFSSQVVNRNNESLIIGLD 1200
                         LNY+TI K++K F GRFINK++SDGR TF S+ +V +  +S++IGL+
Sbjct: 498  INTNDFKNDQS--LNYLTISKDSKTFYGRFINKVISDGRETFMSTSIVGQRTDSILIGLN 555

Query: 1201 LSHCSNCVIDPDFSVLVSSSFKTTTTTDCEINNKNNWKIPVAVVISVVGFSMIVLISMII 1380
            L HC  C+IDPDFS+LV   +KT+   D   +++  W +PV +V   VG ++I++I  II
Sbjct: 556  LPHCKTCLIDPDFSLLVDQDYKTSCDDD---DSRPKWFLPVVIVAPAVGAAIIIIIGSII 612

Query: 1381 FK 1386
            +K
Sbjct: 613  YK 614

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,772,798,540
Number of extensions: 34546849
Number of successful extensions: 77493
Number of sequences better than 10.0: 33
Number of HSP's gapped: 77274
Number of HSP's successfully gapped: 36
Length of query: 462
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 330
Effective length of database: 623,955,076
Effective search space: 205905175080
Effective search space used: 205905175080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.97  gvh: 0.75  alm: 0.17  top: 0.33  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for Contig-U12395-1 is pla
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0