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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12390-1
Contig ID Contig-U12390-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Contig-U12390-1Q.Seq.d
AATTTAAAAAAAAAAAAAAAANTAANTAANTAAAATAANTAANTAANTAA
AATAANTAANTAAAAAAAAAAAAAANTTTNTTTTTTTTTTTNAAAAAAAA
ANNNNNNNNN----------ATTTAGTGAATCATCAAATTCAATTCTTTT
TAATTCAACAATTATTTTAGATAGAGGTGATATGAAAATTAAAGTTGGAT
CAACATTAGAACTTTTAAATACTAAATTGATAAATAAAAATGCCAATATG
AATATCAATGGTAATATTTATATTAATACCAATAGTAGTATGACAAATGG
TGCCAACTTTAAATTAAATTCAAATATTCTTCCATTGAATAATTCTGGTA
CTGAAGAGTTTGATAATCAAGGTTACTTTGATATTGTAAAGGGTGCAAAT
GAATCAATTATTATGGTTCCAGTTAGAAATAGTGGTACAATTAATGTTGG
TAGAGAAACTACAATTATTTCATTCACTTCAACCAATGGTACTATAATTG
TTAATCCAAATGCAACTCTTCATTCAAATAACACTTTTATAATTTCAAAT
AGTAGTGTACAAGGTAGTGGTGTAATTAATTCATCAATTTCATCAAATGG
TGGATCAAGTTATGGTAACGATACAATCACAAACTTGGATATTAATGGTA
ATTTAGAATCAAATGAAGATGAATTTATATTTACATTGGATGGTAAAAAC
TCTACAACTATTAATATTGGTAATAATGCAACCATTACAAATGCTACTTT
AATCATTAGAGTTAGTAATGATATTGTAAATTCAACCCAAAATACAACAT
TGGTAACAAGTTCAAATTTGGATGCAACCTTTTCAAAAATTGTTTTTCAA
TCATATGATCCAGAAACTGGAATTCAAAAACAATTGGATGATTGTGCTCA
TAAAATTAAAAATGATAAAGGTACTCTTGGATTATTATTAAATTCAAATG
CTAAACAATGTGTAATAGTTTCCACTACAAGTAGTGGTACAGGTGGTGGC
ACAGGTGGTGGTACAGGTGGTAGTACAGGTGGTGGTACAAGTGGTAGTAC
AGGTGGAGGTACAGGTGGTACAGGTGGAGGTACAGGCCAAACTGTTGTGG
TTGTTGAAGAAGATCAAAAGAGCTCATTAAGTGCTGGTGCAATTGCTGGT
ATTATTGTAGGTATCGTTTGTGTTGCTGGTATTGTTGGTGTAATTATTCA
TTTCAGAAATAAATTACCATCTGCTCAAAGATTAACTTTCAAATTAAAGA
ATCTTAGGATAAACCTTAAAAATTTTAAGATTCTAATTATTTATTTAA
Gap gap included
Contig length 1288
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2782252
End point 2783453
Strand (PLUS/MINUS) PLUS
Number of clones 20
Number of EST 21
Link to clone list U12390
List of clone(s) 

est1=VHA695F,1,101
est2=VHI137Z,102,784
est3=VHN394Z,105,783
est4=VHP481Z,169,815
est5=VHH520Z,449,1176
est6=VHH794Z,462,1275
est7=VHH521Z,475,1162
est8=VHA340Z,483,1145
est9=VHC580Z,485,1167
est10=VHE339Z,485,1166
est11=VHJ262Z,486,1268
est12=VHD329Z,487,1266
est13=VHK596Z,506,1179
est14=VHF408Z,513,1163
est15=VHL427Z,514,1168
est16=VHA227Z,519,1175
est17=VHA620Z,525,1267
est18=VHC180Z,526,1264
est19=VHG872Z,536,1262
est20=VHA695Z,916,1184
est21=SLD432E,1101,1280
Translated Amino Acid sequence 
i*kkkkx*xxkixx*xk*XXKKKKXFXFFFXKKXXX---

---FSESSNSILFNSTIILDRGDMKIKVGSTLELLNTKLINKNANMNINGNIYINTNSSM
TNGANFKLNSNILPLNNSGTEEFDNQGYFDIVKGANESIIMVPVRNSGTINVGRETTIIS
FTSTNGTIIVNPNATLHSNNTFIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGN
LESNEDEFIFTLDGKNSTTINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATF
SKIVFQSYDPETGIQKQLDDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGG
TGGSTGGGTSGSTGGGTGGTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVGIVCVAGIVGV
IIHFRNKLPSAQRLTFKLKNLRINLKNFKILIIYL
Translated Amino Acid sequence (All Frames) 
Frame A:
nlkkkkkxxx*nx*xxkixx*kkkkxxfffxkkxxx---

---i**iikfnsf*fnnyfr*r*yen*swinirtfky*idk*kcqyeyqw*yly*yq**y
dkwcql*ikfkyssie*fwy*rv**srll*yckgck*inyygss*k*wyn*cw*rnynyf
ihfnqwyync*skcnssfk*hfynfk**ctr*wcn*finfikwwiklw*rynhklgy*w*
frik*r*iyiyigw*klyny*yw**cnhykcyfnh*s***yckfnpkynignkfkfgcnl
fkncfsii*srnwnsktig*lcs*n*k**ryswiiikfkc*tmcnsfhyk*wyrwwhrww
yrw*yrwwykw*yrwryrwyrwryrpnccgc*rrskelikcwcncwyycryrlccwycwc
nysfqk*iticskinfqikes*dkp*kf*dsnylf

Frame B:
i*kkkkx*xxkixx*xk*XXKKKKXFXFFFXKKXXX---

---FSESSNSILFNSTIILDRGDMKIKVGSTLELLNTKLINKNANMNINGNIYINTNSSM
TNGANFKLNSNILPLNNSGTEEFDNQGYFDIVKGANESIIMVPVRNSGTINVGRETTIIS
FTSTNGTIIVNPNATLHSNNTFIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGN
LESNEDEFIFTLDGKNSTTINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATF
SKIVFQSYDPETGIQKQLDDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGG
TGGSTGGGTSGSTGGGTGGTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVGIVCVAGIVGV
IIHFRNKLPSAQRLTFKLKNLRINLKNFKILIIYL

Frame C:
fkkkkkxx*xk*xxx*nx*xkkkkxxfffxkkkxxx---

---lvnhqiqffliqqlf*ievi*klkldqh*nf*iln**ikmpi*ismvifilipivv*
qmvptln*iqiffh*iilvlksliikvtlil*rvqmnqllwfqleivvqlmlveklqlfh
slqpmvl*lliqmqlfiqitll*fqivvykvvv*lihqfhqmvdqvmvtiqsqtwilmvi
*nqmkmnlylhwmvktlqllilvimqplqmll*slelvmil*iqpkiqhw*qvqiwmqpf
qklffnhmiqklefknnwmivliklkmikvlldyy*iqmlnnv**fplqvvvqvvaqvvv
qvvvqvvvqvvvqvevqvvqvevqakllwllkkikrah*vlvqllvll*vsfvllvllv*
lfiseinyhllkd*lsn*rilg*tlkilrf*lfi*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12390-1 (Contig-U12390-1Q)
/CSM_Contig/Contig-U12390-1Q.Seq.d
         (1298 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Conti...  1737  0.0
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12405-1 (Contig-U12405-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11687-1 (Contig-U11687-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10784-1 (Contig-U10784-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13778-1 (Contig-U13778-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U10802-1 (Contig-U10802-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U10734-1 (Contig-U10734-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U06643-1 (Contig-U06643-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U03900-1 (Contig-U03900-1Q) /CSM_Contig/Conti...    38  0.023

>Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Contig-U12390-1Q.Seq.d
          Length = 1298

 Score = 1737 bits (876), Expect = 0.0
 Identities = 876/876 (100%)
 Strand = Plus / Plus

                                                                       
Query: 121 atttagtgaatcatcaaattcaattctttttaattcaacaattattttagatagaggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttagtgaatcatcaaattcaattctttttaattcaacaattattttagatagaggtga 180

                                                                       
Query: 181 tatgaaaattaaagttggatcaacattagaacttttaaatactaaattgataaataaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgaaaattaaagttggatcaacattagaacttttaaatactaaattgataaataaaaa 240

                                                                       
Query: 241 tgccaatatgaatatcaatggtaatatttatattaataccaatagtagtatgacaaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgccaatatgaatatcaatggtaatatttatattaataccaatagtagtatgacaaatgg 300

                                                                       
Query: 301 tgccaactttaaattaaattcaaatattcttccattgaataattctggtactgaagagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgccaactttaaattaaattcaaatattcttccattgaataattctggtactgaagagtt 360

                                                                       
Query: 361 tgataatcaaggttactttgatattgtaaagggtgcaaatgaatcaattattatggttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgataatcaaggttactttgatattgtaaagggtgcaaatgaatcaattattatggttcc 420

                                                                       
Query: 421 agttagaaatagtggtacaattaatgttggtagagaaactacaattatttcattcacttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agttagaaatagtggtacaattaatgttggtagagaaactacaattatttcattcacttc 480

                                                                       
Query: 481 aaccaatggtactataattgttaatccaaatgcaactcttcattcaaataacacttttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaccaatggtactataattgttaatccaaatgcaactcttcattcaaataacacttttat 540

                                                                       
Query: 541 aatttcaaatagtagtgtacaaggtagtggtgtaattaattcatcaatttcatcaaatgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatttcaaatagtagtgtacaaggtagtggtgtaattaattcatcaatttcatcaaatgg 600

                                                                       
Query: 601 tggatcaagttatggtaacgatacaatcacaaacttggatattaatggtaatttagaatc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tggatcaagttatggtaacgatacaatcacaaacttggatattaatggtaatttagaatc 660

                                                                       
Query: 661 aaatgaagatgaatttatatttacattggatggtaaaaactctacaactattaatattgg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaatgaagatgaatttatatttacattggatggtaaaaactctacaactattaatattgg 720

                                                                       
Query: 721 taataatgcaaccattacaaatgctactttaatcattagagttagtaatgatattgtaaa 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 taataatgcaaccattacaaatgctactttaatcattagagttagtaatgatattgtaaa 780

                                                                       
Query: 781 ttcaacccaaaatacaacattggtaacaagttcaaatttggatgcaaccttttcaaaaat 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttcaacccaaaatacaacattggtaacaagttcaaatttggatgcaaccttttcaaaaat 840

                                                                       
Query: 841 tgtttttcaatcatatgatccagaaactggaattcaaaaacaattggatgattgtgctca 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgtttttcaatcatatgatccagaaactggaattcaaaaacaattggatgattgtgctca 900

                                                                       
Query: 901 taaaattaaaaatgataaaggtactcttggattattattaaattcaaatgctaaacaatg 960
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 taaaattaaaaatgataaaggtactcttggattattattaaattcaaatgctaaacaatg 960

                                               
Query: 961 tgtaatagtttccactacaagtagtggtacaggtgg 996
           ||||||||||||||||||||||||||||||||||||
Sbjct: 961 tgtaatagtttccactacaagtagtggtacaggtgg 996


 Score =  424 bits (214), Expect = e-118
 Identities = 214/214 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1085 ggccaaactgttgtggttgttgaagaagatcaaaagagctcattaagtgctggtgcaatt 1144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 ggccaaactgttgtggttgttgaagaagatcaaaagagctcattaagtgctggtgcaatt 1144

                                                                        
Query: 1145 gctggtattattgtaggtatcgtttgtgttgctggtattgttggtgtaattattcatttc 1204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 gctggtattattgtaggtatcgtttgtgttgctggtattgttggtgtaattattcatttc 1204

                                                                        
Query: 1205 agaaataaattaccatctgctcaaagattaactttcaaattaaagaatcttaggataaac 1264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 agaaataaattaccatctgctcaaagattaactttcaaattaaagaatcttaggataaac 1264

                                              
Query: 1265 cttaaaaattttaagattctaattatttatttaa 1298
            ||||||||||||||||||||||||||||||||||
Sbjct: 1265 cttaaaaattttaagattctaattatttatttaa 1298


>Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
          Length = 1808

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 709  tattaatattggtaataatgcaaccatta 737
            ||||||||||||||| |||||||| ||||
Sbjct: 1262 tattaatattggtaaaaatgcaacaatta 1290


>Contig-U12405-1 (Contig-U12405-1Q) /CSM_Contig/Contig-U12405-1Q.Seq.d
          Length = 1324

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 1126 attaagtgctggtgcaattgctggtatt 1153
            |||||||| ||||| |||||||||||||
Sbjct: 1121 attaagtggtggtgaaattgctggtatt 1148


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,634
Number of Sequences: 6905
Number of extensions: 29634
Number of successful extensions: 3455
Number of sequences better than 10.0: 365
length of query: 1298
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1282
effective length of database: 5,564,391
effective search space: 7133549262
effective search space used: 7133549262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Contig-U12390-1Q.Seq.d
         (1298 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441639) Dictyostelium discoideum cDNA clone:ddv47i09, 3' ...  1324   0.0    1
(BJ444932) Dictyostelium discoideum cDNA clone:ddv57l23, 3' ...  1310   0.0    1
(BJ446130) Dictyostelium discoideum cDNA clone:ddv61b22, 3' ...  1275   0.0    1
(BJ441502) Dictyostelium discoideum cDNA clone:ddv46l23, 3' ...   991   0.0    3
(BJ441239) Dictyostelium discoideum cDNA clone:ddv46i05, 3' ...   971   0.0    2
(BJ436535) Dictyostelium discoideum cDNA clone:ddv31p09, 3' ...   955   0.0    2
(BJ438279) Dictyostelium discoideum cDNA clone:ddv36o19, 3' ...   952   0.0    2
(BJ438583) Dictyostelium discoideum cDNA clone:ddv37j07, 3' ...   948   0.0    3
(BJ439098) Dictyostelium discoideum cDNA clone:ddv39n09, 3' ...   946   0.0    2
(BJ442363) Dictyostelium discoideum cDNA clone:ddv49k16, 3' ...   936   0.0    2
(BJ443450) Dictyostelium discoideum cDNA clone:ddv52o23, 3' ...   910   0.0    2
(BJ443554) Dictyostelium discoideum cDNA clone:ddv53f08, 3' ...   894   0.0    2
(BJ439665) Dictyostelium discoideum cDNA clone:ddv41p02, 3' ...   884   0.0    2
(BJ436475) Dictyostelium discoideum cDNA clone:ddv31e08, 3' ...   884   0.0    2
(BJ436736) Dictyostelium discoideum cDNA clone:ddv32g06, 3' ...   872   0.0    2
(BJ440785) Dictyostelium discoideum cDNA clone:ddv44p18, 3' ...   837   0.0    3
(BJ441230) Dictyostelium discoideum cDNA clone:ddv46g05, 3' ...   634   0.0    3
(BJ437969) Dictyostelium discoideum cDNA clone:ddv35o19, 3' ...   559   0.0    4
(AU052505) Dictyostelium discoideum slug cDNA, clone SLD432.      274   4e-87  2
(BJ437015) Dictyostelium discoideum cDNA clone:ddv32m24, 3' ...   204   1e-69  2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    38   6e-07  16
(AU270778) Dictyostelium discoideum vegetative cDNA clone:VS...    62   6e-05  1
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       38   8e-05  9
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   2e-04  12
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    36   3e-04  12
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   7e-04  14
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   0.001  13
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.001  15
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    38   0.001  11
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    40   0.001  15
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    34   0.002  14
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   0.004  13
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   0.007  13
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    48   0.008  11
(AZ682951) ENTHL32TR Entamoeba histolytica Sheared DNA Entam...    54   0.014  1
(AZ541475) ENTGK77TR Entamoeba histolytica Sheared DNA Entam...    54   0.014  1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.014  23
(FK709198) T3705D02M13F T37 Aedes aegypti cDNA, mRNA sequence.     38   0.016  3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    36   0.018  12
(AM480103) Vitis vinifera contig VV78X055877.8, whole genome...    38   0.021  4
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    36   0.034  11
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    34   0.035  12
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    36   0.038  12
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            38   0.040  17
(ER350996) 1092347000304 Global-Ocean-Sampling_GS-34-01-01-1...    40   0.043  2
(ER344625) 1092344371279 Global-Ocean-Sampling_GS-34-01-01-1...    40   0.045  2
(AC114258) Dictyostelium discoideum chromosome 2 map complem...    36   0.047  9
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    36   0.047  12
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   0.053  17
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    40   0.078  12
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    36   0.086  12
(CS468864) Sequence 55 from Patent EP1748080.                      36   0.093  15
(CS419341) Sequence 55 from Patent WO2006094836.                   36   0.093  15
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          36   0.097  17
(BJ409233) Dictyostelium discoideum cDNA clone:dds40j06, 3' ...    40   0.10   3
(AB032076) Dictyostelium discoideum mRNA for lagC2, complete...    40   0.14   4
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    36   0.15   10
(DD061483) Methods and nucleic acids for the analysis of  he...    36   0.15   4
(AX599045) Sequence 385 from Patent WO02077272.                    36   0.15   4
(AF442957) Ostrinia nubilalis mitochondrion, complete genome.      40   0.16   6
(BJ405962) Dictyostelium discoideum cDNA clone:dds33k15, 3' ...    40   0.19   3
(AE017245) Mycoplasma synoviae 53, complete genome.                36   0.20   17
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    34   0.21   22
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   0.22   15
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   0.22   12
(AC229696) Medicago truncatula clone mth2-20h11, WORKING DRA...    36   0.22   9
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    36   0.26   8
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.26   14
(AU034725) Dictyostelium discoideum slug cDNA, clone SLE243.       40   0.27   3
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   0.27   11
(DU964146) 236886 Tomato MboI BAC Library Solanum lycopersic...    36   0.29   4
(BJ381930) Dictyostelium discoideum cDNA clone:ddc43k07, 3' ...    40   0.31   3
(BJ404657) Dictyostelium discoideum cDNA clone:dds29p03, 3' ...    40   0.33   3
(C84741) Dictyostelium discoideum slug cDNA, clone SSF202.         40   0.33   3
(AC188085) Macaca mulatta chromosome UNK clone CH250-95H12, ...    40   0.33   7
(BJ405123) Dictyostelium discoideum cDNA clone:dds30m18, 3' ...    40   0.34   3
(CS468863) Sequence 54 from Patent EP1748080.                      36   0.34   14
(CS419340) Sequence 54 from Patent WO2006094836.                   36   0.34   14
(BJ344177) Dictyostelium discoideum cDNA clone:dda18m15, 3' ...    40   0.34   3
(AU038135) Dictyostelium discoideum slug cDNA, clone SSH316.       40   0.34   3
(BJ386153) Dictyostelium discoideum cDNA clone:ddc57f12, 3' ...    40   0.35   3
(AC115581) Dictyostelium discoideum chromosome 2 map complem...    36   0.36   7
(BJ406353) Dictyostelium discoideum cDNA clone:dds35a05, 3' ...    40   0.36   3
(BJ379379) Dictyostelium discoideum cDNA clone:ddc34n14, 3' ...    40   0.36   3
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    34   0.37   21
(BJ378421) Dictyostelium discoideum cDNA clone:ddc31k22, 3' ...    40   0.37   3
(AW832486) sm11c10.y1 Gm-c1027 Glycine max cDNA clone GENOME...    36   0.37   2
(AM474251) Vitis vinifera, whole genome shotgun sequence, co...    40   0.38   5
(BJ403741) Dictyostelium discoideum cDNA clone:dds26k01, 3' ...    40   0.38   3
(BJ344595) Dictyostelium discoideum cDNA clone:dda19i21, 3' ...    40   0.39   3
(BJ383607) Dictyostelium discoideum cDNA clone:ddc53j14, 3' ...    40   0.39   3
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    34   0.40   21
(AU034989) Dictyostelium discoideum slug cDNA, clone SLE452.       40   0.41   3
(BJ405949) Dictyostelium discoideum cDNA clone:dds33i14, 3' ...    40   0.41   3
(BJ354218) Dictyostelium discoideum cDNA clone:dda52m23, 3' ...    40   0.41   3
(BJ404557) Dictyostelium discoideum cDNA clone:dds28m19, 3' ...    40   0.41   3
(BJ353140) Dictyostelium discoideum cDNA clone:dda49i04, 3' ...    40   0.41   3
(BJ353185) Dictyostelium discoideum cDNA clone:dda49c11, 3' ...    40   0.41   3
(BJ397944) Dictyostelium discoideum cDNA clone:dds10g07, 3' ...    40   0.42   3
(BJ350746) Dictyostelium discoideum cDNA clone:dda40k22, 3' ...    40   0.43   3

>(BJ441639) Dictyostelium discoideum cDNA clone:ddv47i09, 3' end,
           single read.
          Length = 682

 Score = 1324 bits (668), Expect = 0.0
 Identities = 668/668 (100%)
 Strand = Plus / Minus


Query: 121 atttagtgaatcatcaaattcaattctttttaattcaacaattattttagatagaggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atttagtgaatcatcaaattcaattctttttaattcaacaattattttagatagaggtga 623


Query: 181 tatgaaaattaaagttggatcaacattagaacttttaaatactaaattgataaataaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tatgaaaattaaagttggatcaacattagaacttttaaatactaaattgataaataaaaa 563


Query: 241 tgccaatatgaatatcaatggtaatatttatattaataccaatagtagtatgacaaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgccaatatgaatatcaatggtaatatttatattaataccaatagtagtatgacaaatgg 503


Query: 301 tgccaactttaaattaaattcaaatattcttccattgaataattctggtactgaagagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgccaactttaaattaaattcaaatattcttccattgaataattctggtactgaagagtt 443


Query: 361 tgataatcaaggttactttgatattgtaaagggtgcaaatgaatcaattattatggttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgataatcaaggttactttgatattgtaaagggtgcaaatgaatcaattattatggttcc 383


Query: 421 agttagaaatagtggtacaattaatgttggtagagaaactacaattatttcattcacttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agttagaaatagtggtacaattaatgttggtagagaaactacaattatttcattcacttc 323


Query: 481 aaccaatggtactataattgttaatccaaatgcaactcttcattcaaataacacttttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaccaatggtactataattgttaatccaaatgcaactcttcattcaaataacacttttat 263


Query: 541 aatttcaaatagtagtgtacaaggtagtggtgtaattaattcatcaatttcatcaaatgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatttcaaatagtagtgtacaaggtagtggtgtaattaattcatcaatttcatcaaatgg 203


Query: 601 tggatcaagttatggtaacgatacaatcacaaacttggatattaatggtaatttagaatc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tggatcaagttatggtaacgatacaatcacaaacttggatattaatggtaatttagaatc 143


Query: 661 aaatgaagatgaatttatatttacattggatggtaaaaactctacaactattaatattgg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aaatgaagatgaatttatatttacattggatggtaaaaactctacaactattaatattgg 83


Query: 721 taataatgcaaccattacaaatgctactttaatcattagagttagtaatgatattgtaaa 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  taataatgcaaccattacaaatgctactttaatcattagagttagtaatgatattgtaaa 23


Query: 781 ttcaaccc 788
           ||||||||
Sbjct: 22  ttcaaccc 15

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,914,717,857
Number of extensions: 260900008
Number of successful extensions: 9786967
Number of sequences better than 10.0: 345
Length of query: 1298
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1274
Effective length of database: 97,308,875,965
Effective search space: 123971507979410
Effective search space used: 123971507979410
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Contig-U12390-1Q.Seq.d
         (1298 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY698035_1(AY698035|pid:none) Desmognathus marmoratus isolate 69...    40   0.18
AY612344_1(AY612344|pid:none) Desmognathus marmoratus voucher KH...    40   0.24
DQ018662_1(DQ018662|pid:none) Plethodon dunni isolate 75356 NADH...    38   0.92
AY612348_1(AY612348|pid:none) Desmognathus quadramaculatus vouch...    36   3.5
AY698038_1(AY698038|pid:none) Desmognathus marmoratus isolate T0...    36   3.5
AY698041_1(AY698041|pid:none) Desmognathus marmoratus isolate T0...    36   3.5
CP000270_2676(CP000270|pid:none) Burkholderia xenovorans LB400 c...    35   4.5
CP000958_1165(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ...    35   5.9
CP000319_3365(CP000319|pid:none) Nitrobacter hamburgensis X14, c...    35   5.9
CP000647_1382(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    35   7.8
CP000115_2726(CP000115|pid:none) Nitrobacter winogradskyi Nb-255...    35   7.8
AE001439_852(AE001439|pid:none) Helicobacter pylori J99, complet...    35   7.8
AM747722_592(AM747722|pid:none) Burkholderia cenocepacia J2315 c...    35   7.8
CP000859_2888(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ...    35   7.8

>AY698035_1(AY698035|pid:none) Desmognathus marmoratus isolate 69
           NADH dehydrogenase subunit 2 (ND2) gene, partial cds;
           mitochondrial.
          Length = 345

 Score = 40.0 bits (92), Expect = 0.18
 Identities = 37/138 (26%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
 Frame = -3

Query: 777 TISLLTLMIKVAFVMVALLPILIVVEFLPSNVNINSSSFDSKLPLISKFVIV-----SLP 613
           T++LL LMI   ++++     L++++ L +N+N  +SS+   LPL S  +I+      LP
Sbjct: 199 TLTLLNLMI---YLLLTTSMFLLMMKLLSTNINKMASSWMKNLPLTSTMIIILMSLGGLP 255

Query: 612 *LD---PPFDEIDELI---TPLPC-TLLFEIIKVLFE*RVAFGLTIIVPLVEVNEIIVVS 454
            L    P +  ++E+I   TPL     +  ++ + F  R+++  ++  P   +N  +++
Sbjct: 256 PLSGFMPKWLILEEIIKQNTPLAAMAAMSTLLSLFFYMRLSYMASLTTPPTTMNSKLMLR 315

Query: 453 LPTLIVPLFLTGTIIIDS 400
           L T    L L+ TII+ +
Sbjct: 316 LKTK-SNLILSTTIIMST 332

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,345,414,047
Number of extensions: 22733752
Number of successful extensions: 49020
Number of sequences better than 10.0: 14
Number of HSP's gapped: 48252
Number of HSP's successfully gapped: 14
Length of query: 432
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 301
Effective length of database: 627,191,635
Effective search space: 188784682135
Effective search space used: 188784682135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.82  gvh: 0.41  alm: 0.14  top: 0.97  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U12390-1 is cyt
VS (DIR, S) 0
VH (FL, L) 19
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0