Contig-U12378-1
Contig ID Contig-U12378-1
Contig update 2002.12.18
Contig sequence
>Contig-U12378-1 (Contig-U12378-1Q) /CSM_Contig/Contig-U12378-1Q.Seq.d
AAGTTAGTTATTTTTAATTAATTCAAAAATAATTTTATAAAAAAAAAAAA
AATAAAATCNTTTAATAAAATTCAANAAAAATTAAAATAAAATAAAATAA
AAAATAAAATAGGGNTTAGGNAATTNACATAATTTTATATTCATTTATTA
AAAATANCTAAANCNCNTTAAAAAAAAAANNNNNNNNN----------TC
AAGAGGCTTCATTACTTTTGGCTACTTCTTTTGTGAAGGATCCAAGATTT
TTCAATATATTTCCACCATCGGATCCTCATTCAATACCTCATCTTCAACA
TCTTTACAAATATATTTTAAAAGTACTCTCAAGTTATAATTGCAGTATTT
GGGGTTATTTCGCTATCGATGGTACAATGGTTAGTTGTTTCGTTTGGTTA
AATCCAGAGAAAAAGAAAGAGATTAGATTATCCGATTGTATAAAGGGTTC
CCTTAGTTTAGTCACTAAAATTGGTTTAAAAAGAGTTGGTTTAATTTTAG
ATCTTATGCGTTTTGATGATAATATATTATCAATGGCTCAAAATAATAAT
AATAATCCAAATACAAGTACATCAAATTTACAAACTTTTAAAGGTTCCTC
CTCCTCCTCATCCTCTTCATGTAATCATTGGTTCTTAGCATATTGTTGTA
CCTCTGAGATTTTCAGAGGTAATGGTATTGGTTCTCATATGATTGAAAAT
GTTTTAAATTGGGCTGATCATAATGGTGTTGAAACAAGAACAGTAGTTTT
CGAAAACAACTCTATTGAATTCTTTCAACATCATGGCTTTGAAGTTGGCT
CTGAATTTAAATCAAATTTACCAAAAGGTGTTAACAAAGTTATGGTTTTA
GTTAGAAAACCAAAACAAATTTATTAATTTTAAAAATAATAATAATAATT
ATTAAATATTAATAATAAAATAACTGTATATATAGAAAATAAATAAATAA
ATAAATTTAAATTTTATTTAAA

Gap gap included
Contig length 962
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3180731
End point 3179778
Strand (PLUS/MINUS) MINUS
Number of clones 7
Number of EST 8
Link to clone list U12378
List of clone(s)

est1=VHA396F,1,179
est2=VHA396Z,180,817
est3=VHQ141Z,211,819
est4=VHB289Z,212,889
est5=AHB827Z,220,835
est6=VSC321Z,290,948
est7=VHO123Z,405,768
est8=VSE441E,578,954
Translated Amino Acid sequence
s*lflinskiil*kkkk*nxlikfxkn*nkik*kik*glgnxhnfifiy*KXLXXXKKKX
XX---

---QEASLLLATSFVKDPRFFNIFPPSDPHSIPHLQHLYKYILKVLSSYNCSIWGYFAID
GTMVSCFVWLNPEKKKEIRLSDCIKGSLSLVTKIGLKRVGLILDLMRFDDNILSMAQNNN
NNPNTSTSNLQTFKGSSSSSSSSCNHWFLAYCCTSEIFRGNGIGSHMIENVLNWADHNGV
ETRTVVFENNSIEFFQHHGFEVGSEFKSNLPKGVNKVMVLVRKPKQIY*f*k****llni
nnkitvyienk*inkfkfyl


Translated Amino Acid sequence (All Frames)
Frame A:
klvifn*fknnfikkkkiksfnkiqxklk*nkiknkigxrxxt*fyihllkixkxx*kkx
xx---

---srgfitfgyffcegskifqyistigssfntssstslqiyfkstlkl*lqylglfryr
wyng*lfrlvksrekerd*iirlykgfp*fsh*nwfkkswfnfrsyaf***yiingsk**
**skykyikftnf*rfllllilfm*slvlsillyl*dfqr*wywfsyd*kcfklg*s*wc
*nknssfrkqly*ilstswl*swl*i*ikftkrc*qsygfs*ktktnllilkiiiiiiky
***nnciyrk*ink*i*ilfk

Frame B:
s*lflinskiil*kkkk*nxlikfxkn*nkik*kik*glgnxhnfifiy*KXLXXXKKKX
XX---

---QEASLLLATSFVKDPRFFNIFPPSDPHSIPHLQHLYKYILKVLSSYNCSIWGYFAID
GTMVSCFVWLNPEKKKEIRLSDCIKGSLSLVTKIGLKRVGLILDLMRFDDNILSMAQNNN
NNPNTSTSNLQTFKGSSSSSSSSCNHWFLAYCCTSEIFRGNGIGSHMIENVLNWADHNGV
ETRTVVFENNSIEFFQHHGFEVGSEFKSNLPKGVNKVMVLVRKPKQIY*f*k****llni
nnkitvyienk*inkfkfyl

Frame C:
vsyf*liqk*fykkkknkix**nsxkikik*nkk*nrx*xixiilysfiknx*xxlkkkx
xx---

---krlhyfwllll*riqdfsiyfhhriliqylifniftnif*kysqviiavfgvislsm
vqwlvvsfg*iqrkrkrldypiv*rvplv*slklv*kelv*f*ilcvlmiiyyqwlkiii
iiqiqvhqiykllkvpppphplhviigs*hivvplrfsevmvlvli*lkmf*igliimvl
kqeq*fskttllnsfnimalklalnlnqiyqkvltklwf*lenqnkfinfknnnnny*il
iik*lyi*kink*inlnfi*

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12378-1 (Contig-U12378-1Q)
/CSM_Contig/Contig-U12378-1Q.Seq.d
(972 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12378-1 (Contig-U12378-1Q) /CSM_Contig/Conti... 1302 0.0
Contig-U13371-1 (Contig-U13371-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U06472-1 (Contig-U06472-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U10837-1 (Contig-U10837-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U01883-1 (Contig-U01883-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U12167-1 (Contig-U12167-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U11364-1 (Contig-U11364-1Q) /CSM_Contig/Conti... 40 0.004

>Contig-U12378-1 (Contig-U12378-1Q) /CSM_Contig/Contig-U12378-1Q.Seq.d
Length = 972

Score = 1302 bits (657), Expect = 0.0
Identities = 657/657 (100%)
Strand = Plus / Plus


Query: 199 tcaagaggcttcattacttttggctacttcttttgtgaaggatccaagatttttcaatat 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tcaagaggcttcattacttttggctacttcttttgtgaaggatccaagatttttcaatat 258


Query: 259 atttccaccatcggatcctcattcaatacctcatcttcaacatctttacaaatatatttt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atttccaccatcggatcctcattcaatacctcatcttcaacatctttacaaatatatttt 318


Query: 319 aaaagtactctcaagttataattgcagtatttggggttatttcgctatcgatggtacaat 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaaagtactctcaagttataattgcagtatttggggttatttcgctatcgatggtacaat 378


Query: 379 ggttagttgtttcgtttggttaaatccagagaaaaagaaagagattagattatccgattg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggttagttgtttcgtttggttaaatccagagaaaaagaaagagattagattatccgattg 438


Query: 439 tataaagggttcccttagtttagtcactaaaattggtttaaaaagagttggtttaatttt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tataaagggttcccttagtttagtcactaaaattggtttaaaaagagttggtttaatttt 498


Query: 499 agatcttatgcgttttgatgataatatattatcaatggctcaaaataataataataatcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agatcttatgcgttttgatgataatatattatcaatggctcaaaataataataataatcc 558


Query: 559 aaatacaagtacatcaaatttacaaacttttaaaggttcctcctcctcctcatcctcttc 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaatacaagtacatcaaatttacaaacttttaaaggttcctcctcctcctcatcctcttc 618


Query: 619 atgtaatcattggttcttagcatattgttgtacctctgagattttcagaggtaatggtat 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atgtaatcattggttcttagcatattgttgtacctctgagattttcagaggtaatggtat 678


Query: 679 tggttctcatatgattgaaaatgttttaaattgggctgatcataatggtgttgaaacaag 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tggttctcatatgattgaaaatgttttaaattgggctgatcataatggtgttgaaacaag 738


Query: 739 aacagtagttttcgaaaacaactctattgaattctttcaacatcatggctttgaagttgg 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aacagtagttttcgaaaacaactctattgaattctttcaacatcatggctttgaagttgg 798


Query: 799 ctctgaatttaaatcaaatttaccaaaaggtgttaacaaagttatggttttagttag 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctctgaatttaaatcaaatttaccaaaaggtgttaacaaagttatggttttagttag 855


Score = 77.8 bits (39), Expect = 2e-14
Identities = 51/51 (100%)
Strand = Plus / Plus


Query: 112 gggnttaggnaattnacataattttatattcatttattaaaaatanctaaa 162
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gggnttaggnaattnacataattttatattcatttattaaaaatanctaaa 162


Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus


Query: 1 aagttagttatttttaattaattcaaaaataatttt 36
||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagttagttatttttaattaattcaaaaataatttt 36


Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 540 aaaataataataataat 556
|||||||||||||||||
Sbjct: 883 aaaataataataataat 899


Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 517 tgataatatattatca 532
||||||||||||||||
Sbjct: 532 tgataatatattatca 517


>Contig-U13371-1 (Contig-U13371-1Q) /CSM_Contig/Contig-U13371-1Q.Seq.d
Length = 1277

Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 540 aaaataataataataatccaaat 562
|||||||||||||||||||||||
Sbjct: 1174 aaaataataataataatccaaat 1196


Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 542 aataataataataat 556
|||||||||||||||
Sbjct: 545 aataataataataat 559


Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 542 aataataataataat 556
|||||||||||||||
Sbjct: 542 aataataataataat 556


Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 542 aataataataataat 556
|||||||||||||||
Sbjct: 548 aataataataataat 562


Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 542 aataataataataat 556
|||||||||||||||
Sbjct: 539 aataataataataat 553


>Contig-U06472-1 (Contig-U06472-1Q) /CSM_Contig/Contig-U06472-1Q.Seq.d
Length = 182

Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 541 aaataataataataatccaaata 563
|||||||||||||||||||||||
Sbjct: 25 aaataataataataatccaaata 47


Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 542 aataataataataatccaaata 563
||||||||||||||||||||||
Sbjct: 95 aataataataataatccaaata 116


Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 545 aataataataatccaaata 563
|||||||||||||||||||
Sbjct: 11 aataataataatccaaata 29


Score = 36.2 bits (18), Expect = 0.069
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 545 aataataataatccaaat 562
||||||||||||||||||
Sbjct: 44 aataataataatccaaat 61


Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 540 aaaataataataataat 556
|||||||||||||||||
Sbjct: 90 aaaataataataataat 106


Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 541 aaataataataataa 555
|||||||||||||||
Sbjct: 112 aaataataataataa 126


Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 542 aataataataataat 556
|||||||||||||||
Sbjct: 74 aataataataataat 88


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,407
Number of Sequences: 6905
Number of extensions: 30407
Number of successful extensions: 11692
Number of sequences better than 10.0: 1718
length of query: 972
length of database: 5,674,871
effective HSP length: 16
effective length of query: 956
effective length of database: 5,564,391
effective search space: 5319557796
effective search space used: 5319557796
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12378-1 (Contig-U12378-1Q) /CSM_Contig/Contig-U12378-1Q.Seq.d
(972 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ436697) Dictyostelium discoideum cDNA clone:ddv31p23, 3' ... 1253 0.0 1
(BJ437272) Dictyostelium discoideum cDNA clone:ddv33a24, 3' ... 1223 0.0 1
(BJ348768) Dictyostelium discoideum cDNA clone:dda34f08, 3' ... 1221 0.0 1
(BJ446600) Dictyostelium discoideum cDNA clone:ddv63a11, 3' ... 1201 0.0 1
(AU262477) Dictyostelium discoideum vegetative cDNA clone:VS... 1084 0.0 1
(BJ445337) Dictyostelium discoideum cDNA clone:ddv59m05, 3' ... 533 e-159 2
(AU263106) Dictyostelium discoideum vegetative cDNA clone:VS... 513 e-141 1
(BJ418197) Dictyostelium discoideum cDNA clone:ddv31p23, 5' ... 78 5e-25 2
(AF079445) Dictyostelium discoideum TipC (tipC) gene, comple... 38 0.002 5
(EW965890) BRHL_05_K23_T7 Headlice composite library with al... 36 0.002 3
(BU596127) AGENCOURT_8906683 NIH_MGC_142 Homo sapiens cDNA c... 56 0.003 1
(AL139038) Human DNA sequence from clone RP11-456B18 on chro... 40 0.005 5
(AC220996) Mus musculus chromosome 7 clone RP23-222D21 map 7... 40 0.006 5
(AL121774) Human chromosome 14 DNA sequence BAC R-430G13 of ... 46 0.007 4
(CN346447) 17000599935931 GRN_PREHEP Homo sapiens cDNA 5', m... 54 0.010 1
(AJ651959) Sus scrofa EST, clone C0005179_D02. 54 0.010 1
(BG387807) 602412694F1 NIH_MGC_92 Homo sapiens cDNA clone IM... 54 0.010 1
(CZ512896) GMW2-75E6a.g1 GMW2 Glycine max genomic, genomic s... 50 0.012 2
(AC188089) Mus musculus chromosome 14 clone RP23-274E2, comp... 46 0.013 4
(AC190173) Mus musculus chromosome 14 clone RP24-80K11, comp... 46 0.013 4
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 38 0.014 6
(AC135962) Mus musculus BAC clone RP23-342H15 from chromosom... 44 0.015 3
(AC107085) Oryza sativa Japonica Group chromosome 5 clone OJ... 38 0.020 6
(AC121253) Homo sapiens chromosome 3 clone RP11-208G16, comp... 52 0.023 2
(DY357790) ZO__Ed0002C20.r ZO__Ed Zingiber officinale cDNA c... 48 0.025 2
(DY357786) ZO__Ed0002C18.f ZO__Ed Zingiber officinale cDNA c... 48 0.025 2
(AL359644) Human DNA sequence from clone RP11-162D16 on chro... 48 0.025 4
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 34 0.026 9
(AC116919) Dictyostelium discoideum chromosome 2 map complem... 44 0.028 2
(AC149845) Papio anubis clone RP41-13K15, WORKING DRAFT SEQU... 52 0.028 2
(EH780965) CNSS19803.b1_E08.ab1 CNS(LMS) yellow starthistle ... 44 0.028 2
(EH781619) CNSS20457.b1_B03.ab1 CNS(LMS) yellow starthistle ... 44 0.029 2
(EH789884) CNSS29928.b1_P18.ab1 CNS(LMS) yellow starthistle ... 44 0.030 2
(AC006927) Homo sapiens 12 BAC RP11-444J21 (Roswell Park Can... 40 0.030 4
(AC184581) Strongylocentrotus purpuratus clone R3-3093P10, W... 40 0.033 5
(AL844507) Plasmodium falciparum chromosome 8. 40 0.034 4
(AC112198) Homo sapiens chromosome 5 clone RP11-45H22, compl... 40 0.034 4
(AC112991) Mus musculus clone RP24-373G12, WORKING DRAFT SEQ... 48 0.034 6
(AC212851) Populus trichocarpa clone POP079-C10, complete se... 32 0.036 9
(CU137655) Medicago truncatula chromosome 5 clone mth2-16f8,... 40 0.036 6
(AC156808) Pan troglodytes BAC clone CH251-265N17 from chrom... 52 0.038 3
(CU688181) Synthetic construct Homo sapiens gateway clone IM... 52 0.040 1
(CU688180) Synthetic construct Homo sapiens gateway clone IM... 52 0.040 1
(CU678447) Synthetic construct Homo sapiens gateway clone IM... 52 0.040 1
(CU678446) Synthetic construct Homo sapiens gateway clone IM... 52 0.040 1
(BT020162) Synthetic construct Homo sapiens high-mobility gr... 52 0.040 1
(BT020161) Synthetic construct Homo sapiens high-mobility gr... 52 0.040 1
(BT007662) Synthetic construct Homo sapiens high-mobility gr... 52 0.040 1
(BC140018) Synthetic construct Homo sapiens clone IMAGE:1000... 52 0.040 1
(BC140013) Synthetic construct Homo sapiens clone IMAGE:1000... 52 0.040 1
(AY891765) Synthetic construct Homo sapiens clone FLH014737.... 52 0.040 1
(AY891044) Synthetic construct Homo sapiens clone FLH007237.... 52 0.040 1
(AY891043) Synthetic construct Homo sapiens clone FLH007236.... 52 0.040 1
(AY889267) Synthetic construct Homo sapiens clone FLH014740.... 52 0.040 1
(AY888416) Synthetic construct Homo sapiens clone FLH007241.... 52 0.040 1
(BV180232) sqnm108522 Human DNA (Sequenom) Homo sapiens STS ... 52 0.040 1
(BV166316) HMGB1_1600 Rhesus macaque genomic DNA Macaca mula... 52 0.040 1
(AC171181) Pan troglodytes BAC clone CH251-214F24 from chrom... 52 0.040 1
(AB170758) Macaca fascicularis brain cDNA clone: QmoA-12474,... 52 0.040 1
(AB168615) Macaca fascicularis testis cDNA clone: QtsA-13487... 52 0.040 1
(EA356262) Sequence 39 from patent US 7288250. 52 0.040 1
(EA324222) Sequence 32 from patent US 7304034. 52 0.040 1
(EA131844) Sequence 9 from patent US 7220723. 52 0.040 1
(DJ433911) A pharmaceutical composition for preventing or tr... 52 0.040 1
(DJ433469) A pharmaceutical composition for preventing or tr... 52 0.040 1
(DJ362313) Monoclonal Antibodies Against HMGB1. 52 0.040 1
(DJ128847) Method for detection of diseases or disease markers. 52 0.040 1
(DJ057123) GENES INVOLVED IN NEURODEGENERATIVE DISORDERS. 52 0.040 1
(DI093460) Methods For Assessing and Treating Leukemia. 52 0.040 1
(DD409274) Use of DNA-binding proteins. 52 0.040 1
(DD409273) Use of DNA-binding proteins. 52 0.040 1
(DD388431) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR... 52 0.040 1
(DD388430) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR... 52 0.040 1
(DD388214) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR... 52 0.040 1
(DD386482) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR... 52 0.040 1
(DD349892) Susceptibility Gene for Myocardial Infarction; Me... 52 0.040 1
(DD349817) USE OF HMGB FRAGMENTS AS ANTI-INFLAMMATORY AGENTS. 52 0.040 1
(DD328720) USE OF HMGB POLYPEPTIDES FOR INCREASING IMMUNE RE... 52 0.040 1
(DD228971) Methods For Assessing and Treating Leukemia. 52 0.040 1
(DD165513) USE OF HMGB PROTEINS AND NUCLEIC ACIDS THAT CODE ... 52 0.040 1
(CS606666) Sequence 11 from Patent WO2007039255. 52 0.040 1
(CS500439) Sequence 140 from Patent EP1767656. 52 0.040 1
(CS498738) Sequence 9 from Patent WO2007011606. 52 0.040 1
(CS454305) Sequence 137 from Patent WO2006100203. 52 0.040 1
(CS425334) Sequence 137 from Patent WO2006042581. 52 0.040 1
(CS376037) Sequence 9 from Patent WO2006012373. 52 0.040 1
(CS300640) Sequence 148 from Patent EP1661986. 52 0.040 1
(CS119618) Sequence 1665 from Patent WO2005054508. 52 0.040 1
(CS119327) Sequence 1374 from Patent WO2005054508. 52 0.040 1
(CS084116) Sequence 31 from Patent WO2005039635. 52 0.040 1
(CS057672) Sequence 39 from Patent WO2005026209. 52 0.040 1
(CS057544) Sequence 9 from Patent WO2005025604. 52 0.040 1
(CS039499) Sequence 53 from Patent WO2005019258. 52 0.040 1
(CS030547) Sequence 53 from Patent WO2005016962. 52 0.040 1
(CQ890556) Sequence 41 from Patent WO2004061456. 52 0.040 1
(CQ890555) Sequence 40 from Patent WO2004061456. 52 0.040 1
(CQ729560) Sequence 15494 from Patent WO02068579. 52 0.040 1
(CQ723679) Sequence 9613 from Patent WO02068579. 52 0.040 1
(CQ722623) Sequence 8557 from Patent WO02068579. 52 0.040 1
(CQ709006) Sequence 53932 from Patent WO02070737. 52 0.040 1

>(BJ436697) Dictyostelium discoideum cDNA clone:ddv31p23, 3' end,
single read.
Length = 638

Score = 1253 bits (632), Expect = 0.0
Identities = 636/638 (99%)
Strand = Plus / Minus


Query: 199 tcaagaggcttcattacttttggctacttcttttgtgaaggatccaagatttttcaatat 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcaagaggcttcattacttttggctacttcttttgtgaaggatccaagatttttcaatat 579


Query: 259 atttccaccatcggatcctcattcaatacctcatcttcaacatctttacaaatatatttt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atttccaccatcggatcctcattcaatacctcatcttcaacatctttacaaatatatttt 519


Query: 319 aaaagtactctcaagttataattgcagtatttggggttatttcgctatcgatggtacaat 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaaagtactctcaagttataattgcagtatttggggttatttcgctatcgatggtacaat 459


Query: 379 ggttagttgtttcgtttggttaaatccagagaaaaagaaagagattagattatccgattg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggttagttgtttcgtttggttaaatccagagaaaaagaaagagattagattatccgattg 399


Query: 439 tataaagggttcccttagtttagtcactaaaattggtttaaaaagagttggtttaatttt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tataaagggttcccttagtttagtcactaaaattggtttaaaaagagttggtttaatttt 339


Query: 499 agatcttatgcgttttgatgataatatattatcaatggctcaaaataataataataatcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agatcttatgcgttttgatgataatatattatcaatggctcaaaataataataataatcc 279


Query: 559 aaatacaagtacatcaaatttacaaacttttaaaggttcctcctcctcctcatcctcttc 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaatacaagtacatcaaatttacaaacttttaaaggttcctcctcctcctcatcctcttc 219


Query: 619 atgtaatcattggttcttagcatattgttgtacctctgagattttcagaggtaatggtat 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atgtaatcattggttcttagcatattgttgtacctctgagattttcagaggtaatggtat 159


Query: 679 tggttctcatatgattgaaaatgttttaaattgggctgatcataatggtgttgaaacaag 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tggttctcatatgattgaaaatgttttaaattgggctgatcataatggtgttgaaacaag 99


Query: 739 aacagtagttttcgaaaacaactctattgaattctttcaacatcatggctttgaagttgg 798
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 98 aacagtagttttcnaaaacaactctattgaattctttcaacatcanggctttgaagttgg 39


Query: 799 ctctgaatttaaatcaaatttaccaaaaggtgttaaca 836
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctctgaatttaaatcaaatttaccaaaaggtgttaaca 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,051,096,709
Number of extensions: 81580107
Number of successful extensions: 12674801
Number of sequences better than 10.0: 3929
Length of query: 972
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 948
Effective length of database: 97,308,875,965
Effective search space: 92248814414820
Effective search space used: 92248814414820
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12378-1 (Contig-U12378-1Q) /CSM_Contig/Contig-U12378-1Q.Seq.d
(972 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q55DK2) RecName: Full=Probable serine/threonine-protein kinase ... 420 e-116
AE010299_376(AE010299|pid:none) Methanosarcina acetivorans str. ... 45 0.004
AP011115_1048(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 45 0.005
CP000828_5278(CP000828|pid:none) Acaryochloris marina MBIC11017,... 43 0.019
CP000838_174(CP000838|pid:none) Acaryochloris marina MBIC11017 p... 43 0.019
CP001275_164(CP001275|pid:none) Thermomicrobium roseum DSM 5159,... 42 0.042
AE008384_1607(AE008384|pid:none) Methanosarcina mazei strain Goe... 41 0.071
AP008955_3148(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 41 0.071
AP008957_3803(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 40 0.093
CP000939_950(CP000939|pid:none) Clostridium botulinum B1 str. Ok... 40 0.093
CP001581_996(CP001581|pid:none) Clostridium botulinum A2 str. Ky... 40 0.16
CP001083_920(CP001083|pid:none) Clostridium botulinum Ba4 str. 6... 40 0.16
CP000749_932(CP000749|pid:none) Marinomonas sp. MWYL1, complete ... 39 0.35
AE015929_425(AE015929|pid:none) Staphylococcus epidermidis ATCC ... 38 0.46
AF190732_1(AF190732|pid:none) Bradyrhizobium japonicum strain 11... 38 0.60
AJ489618_2(AJ489618|pid:none) Campylobacter jejuni pCJE8480 plas... 38 0.60
CU638744_327(CU638744|pid:none) Podospora anserina genomic DNA c... 38 0.60
CR382131_1424(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 38 0.60
BA000040_1906(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 38 0.60
CP001349_7057(CP001349|pid:none) Methylobacterium nodulans ORS 2... 37 0.79
CP001628_146(CP001628|pid:none) Micrococcus luteus NCTC 2665, co... 37 1.0
CP000384_3482(CP000384|pid:none) Mycobacterium sp. MCS, complete... 37 1.3
CP000086_3156(CP000086|pid:none) Burkholderia thailandensis E264... 36 1.8
CP000828_2668(CP000828|pid:none) Acaryochloris marina MBIC11017,... 36 1.8
AE008923_3105(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 36 2.3
CP000656_2652(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 35 3.9
AM039952_3284(AM039952|pid:none) Xanthomonas campestris pv. vesi... 35 3.9
AY596297_86(AY596297|pid:none) Haloarcula marismortui ATCC 43049... 35 3.9
AE001437_3318(AE001437|pid:none) Clostridium acetobutylicum ATCC... 35 3.9
CP000151_1524(CP000151|pid:none) Burkholderia sp. 383 chromosome... 35 3.9
CP001175_1621(CP001175|pid:none) Listeria monocytogenes HCC23, c... 35 5.1
CP000511_3832(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 35 5.1
(Q9NHD5) RecName: Full=Probable N-acetyltransferase san; ... 35 5.1
(Q7MGP7) RecName: Full=ATP-dependent RNA helicase rhlB; ... 35 5.1
CP001025_1476(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 5.1
CP000480_4410(CP000480|pid:none) Mycobacterium smegmatis str. MC... 35 5.1
CP000821_2711(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 35 5.1
AM920433_461(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 35 5.1
CP000440_1467(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 35 5.1
CR936503_476(CR936503|pid:none) Lactobacillus sakei strain 23K c... 35 5.1
CP000937_1149(CP000937|pid:none) Francisella philomiragia subsp.... 35 5.1
CP000227_2509(CP000227|pid:none) Bacillus cereus Q1, complete ge... 34 6.7
AM263198_959(AM263198|pid:none) Listeria welshimeri serovar 6b s... 34 6.7
CP000813_488(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 34 6.7
CP000647_2039(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 34 8.7
CP000086_2117(CP000086|pid:none) Burkholderia thailandensis E264... 34 8.7
CP001139_53(CP001139|pid:none) Vibrio fischeri MJ11 chromosome I... 34 8.7
(Q5E8U5) RecName: Full=ATP-dependent RNA helicase rhlB; ... 34 8.7
AJ965256_786(AJ965256|pid:none) Dehalococcoides sp. CBDB1 comple... 34 8.7
CP000854_328(CP000854|pid:none) Mycobacterium marinum M, complet... 34 8.7

>(Q55DK2) RecName: Full=Probable serine/threonine-protein kinase
DDB_G0269628; EC=2.7.11.1;
Length = 737

Score = 420 bits (1080), Expect = e-116
Identities = 205/225 (91%), Positives = 205/225 (91%)
Frame = +2

Query: 200 QEASLLLATSFVKDPRFFNIFPPSDPHSIPHLQHLYKYILKVLSSYNCSIWGYFAIDGTM 379
QEASLLLATSFVKDPRFFNIFPPSDPHSIPHLQHLYKYILKVLSSYNCSIWGYFAIDGTM
Sbjct: 513 QEASLLLATSFVKDPRFFNIFPPSDPHSIPHLQHLYKYILKVLSSYNCSIWGYFAIDGTM 572

Query: 380 VSCFVWLNPEKKKEIRLSDCIKGSLSLVTKIGLKRVGLILDLMRFDDNILSMAQXXXXXX 559
VSCFVWLNPEKKKEIRLSDCIKGSLSLVTKIGLKRVGLILDLMRFDDNILSMAQ
Sbjct: 573 VSCFVWLNPEKKKEIRLSDCIKGSLSLVTKIGLKRVGLILDLMRFDDNILSMAQNNNNNP 632

Query: 560 XXXXXXLQTFKGXXXXXXXXCNHWFLAYCCTSEIFRGNGIGSHMIENVLNWADHNGVETR 739
LQTFKG CNHWFLAYCCTSEIFRGNGIGSHMIENVLNWADHNGVETR
Sbjct: 633 NTSTSNLQTFKGSSSSSSSSCNHWFLAYCCTSEIFRGNGIGSHMIENVLNWADHNGVETR 692

Query: 740 TVVFENNSIEFFQHHGFEVGSEFKSNLPKGVNKVMVLVRKPKQIY 874
TVVFENNSIEFFQHHGFEVGSEFKSNLPKGVNKVMVLVRKPKQIY
Sbjct: 693 TVVFENNSIEFFQHHGFEVGSEFKSNLPKGVNKVMVLVRKPKQIY 737

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,063,376,367
Number of extensions: 20668121
Number of successful extensions: 46422
Number of sequences better than 10.0: 50
Number of HSP's gapped: 46396
Number of HSP's successfully gapped: 51
Length of query: 324
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 195
Effective length of database: 633,664,753
Effective search space: 123564626835
Effective search space used: 123564626835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.68 gvh: 0.46 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.09 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for Contig-U12378-1 is cyt

VS (DIR, S) 2
VH (FL, L) 4
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0