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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12363-1
Contig ID Contig-U12363-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12363-1 (Contig-U12363-1Q) /CSM_Contig/Contig-U12363-1Q.Seq.d
GAAAAAAAAATAAAATTATGATCATTTTTTAAAGCAAAATTAAAATAAAA
ATATAAATAATAAATTTTAAAAATGAAATTTATTTCTTTTTTTATTACTT
TAATTTTAATTTCAATTTTAAATAATTTTGTTTTATCATCAGGTACAACA
GTTAGTGATGTTACATTAATAGTAAATTTAAATAATAATAATAGTTATCC
AGTTAATGGGTCATGTGGTAGTAGTACTCAATTAACATGTAATAATATAA
ATGATGCAATTAATTATTTTAATACTATTGCAGTAAATGTTAATAGAAGT
TCATCACAAATCATTTATCAACAATTGAATCTTTTATTAGATGATGGTAA
TTATTCAACAACAGCAACAACAACAACAATTAATTTATATCAATTTAATA
TAACAATTTCACCATTAAATCCAAGTTCAAATAAAGTTATAATTAATGGT
TTAAATTCAAATTCATCAATGTTTTCTGTAACTCCATTTAATGGTATTGT
AGATAGTAAGGGGCAAAATTCATATATTTTAATCACTGGAATTCAATTTT
TAAATTTTAAACAATCAATTATTCAAGTTTCAACCAATTATTCATTCACT
GATATTAGATTTGAATCATGTATAATTGATCAATACAATTCAAATAATTC
AATGATTGAAATTAATAAATTAATTAGTCA----------GTTATTCAAT
TTTTTGTAANACTTCNACTGTTAAAATTGATGCAACCTTTAAGGNATCAA
CATTTACTTGNGNTCAGNGTAANATGGTTTTAGGTCAAAATCAAATTTGN
AGTGTTGGTGGAAGTTCAGTTTCAAGCNCAACTTCTGCTTNTGGTTCAAG
TTTGTCTGTAAGTAGNAGTGGNNGTCAATCATTAACTGTCNCTTCAACAA
GTTCAACTCCTCAAACTTTTGGNACAGGTTCAAGTTCAAGNACAAGTTCA
AGGACAGGTTCAAGNACAAGTTCAAATTTTCATACTATTATTACTACCCC
NACNACTGGNGNATTTAATCNATTATCCCCNTCNTTTTCNATTTTAANTT
TCNTTATTTTANTATCNNTACCTTTAANTCNATCCTTTTAACCTTTTTTT
TTTTTCTTTTATCATTTTTAAAAAATAAAATTTCCAATTCAATCAAATAA
TAAANAAAATTTAAAAA
Gap gap included
Contig length 1157
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2217730
End point 2218888
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 4
Link to clone list U12363
List of clone(s) 

est1=VHJ554F,1,572
est2=VFN866F,31,680
est3=VFN866Z,681,953
est4=VHJ554Z,681,1158
Translated Amino Acid sequence 
ekkikl*sffkaklk*kyk**ILKMKFISFFITLILISILNNFVLSSGTTVSDVTLIVNL
NNNNSYPVNGSCGSSTQLTCNNINDAINYFNTIAVNVNRSSSQIIYQQLNLLLDDGNYST
TATTTTINLYQFNITISPLNPSSNKVIINGLNSNSSMFSVTPFNGIVDSKGQNSYILITG
IQFLNFKQSIIQVSTNYSFTDIRFESCIIDQYNSNNSMIEINKLIS---

---YSIFCXTSTVKIDATFKXSTFTXXQXXMVLGQNQIXSVGGSSVSSXTSAXGSSLSVS
XSGXQSLTVXSTSSTPQTFGTGSSSXTSSRTGSXTSSNFHTIITTPTTGXFNXLSPSFSI
LXFXILXSXPLXXSF*pfffffyhf*kikfpiqsnnkxnlk
Translated Amino Acid sequence (All Frames) 
Frame A:
ekkikl*sffkaklk*kyk**ILKMKFISFFITLILISILNNFVLSSGTTVSDVTLIVNL
NNNNSYPVNGSCGSSTQLTCNNINDAINYFNTIAVNVNRSSSQIIYQQLNLLLDDGNYST
TATTTTINLYQFNITISPLNPSSNKVIINGLNSNSSMFSVTPFNGIVDSKGQNSYILITG
IQFLNFKQSIIQVSTNYSFTDIRFESCIIDQYNSNNSMIEINKLIS---

---viqffvxlxllklmqplrxqhllxxxvxwf*vkikfxvlvevqfqaqlllxvqvcl*
vxvxvnh*lslqqvqllkllxqvqvqxqvqgqvqxqvqifillllpxxlxxlixypxxfx
f*xslfxyxyl*xxpfnlfffsfiifkk*nfqfnqiixki*k

Frame B:
kkk*nydhflkqn*nkninnkf*k*nlflflll*f*fqf*iilfyhqvqqlvmlh***i*
iiiiviqlmghvvvvln*hvii*mmqliilillq*mlievhhksfinn*ify*mmviiqq
qqqqqqliyinli*qfhh*iqvqikl*lmv*iqihqcfl*lhlmvl*ivrgkihif*sle
fnf*ilnnqlfkfqpiihslildlnhv*lintiqiiq*lklin*lv---

---lfnfl*xfxc*n*cnl*giniylxsx*xgfrsksnlxcwwkfsfkxnfcxwfkfvck
*xwxsiincxfnkfnssnfwxrfkfkxkfkdrfkxkfkfsyyyyypxxwxi*siipxxfx
fxfxyfxixtfxsilltffffllsflknkisnsik**xkfk

Frame C:
kknkimiif*skikiki*iinfkneiyfffyyfnfnfnfk*fcfiiryns**cyinskfk
****lss*wvmw**ysinm**yk*cn*lf*yycskc**kfitnhlstiesfir*w*lfnn
snnnnn*fisi*ynnftikskfk*syn*wfkfkfinvfcnsi*wycr**gakfiyfnhwn
sifkf*tinyssfnqlfih*y*i*imyn*siqfk*fnd*n**in*s---

---YSIFCXTSTVKIDATFKXSTFTXXQXXMVLGQNQIXSVGGSSVSSXTSAXGSSLSVS
XSGXQSLTVXSTSSTPQTFGTGSSSXTSSRTGSXTSSNFHTIITTPTTGXFNXLSPSFSI
LXFXILXSXPLXXSF*pfffffyhf*kikfpiqsnnkxnlk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12363-1 (Contig-U12363-1Q)
/CSM_Contig/Contig-U12363-1Q.Seq.d
         (1167 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12363-1 (Contig-U12363-1Q) /CSM_Contig/Conti...  1166  0.0
Contig-U01571-1 (Contig-U01571-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12482-1 (Contig-U12482-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U10682-1 (Contig-U10682-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09461-1 (Contig-U09461-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U08875-1 (Contig-U08875-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U06537-1 (Contig-U06537-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U05323-1 (Contig-U05323-1Q) /CSM_Contig/Conti...    40  0.005

>Contig-U12363-1 (Contig-U12363-1Q) /CSM_Contig/Contig-U12363-1Q.Seq.d
          Length = 1167

 Score = 1166 bits (588), Expect = 0.0
 Identities = 714/714 (100%)
 Strand = Plus / Plus

                                                                        
Query: 380  ttaatttatatcaatttaatataacaatttcaccattaaatccaagttcaaataaagtta 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380  ttaatttatatcaatttaatataacaatttcaccattaaatccaagttcaaataaagtta 439

                                                                        
Query: 440  taattaatggtttaaattcaaattcatcaatgttttctgtaactccatttaatggtattg 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440  taattaatggtttaaattcaaattcatcaatgttttctgtaactccatttaatggtattg 499

                                                                        
Query: 500  tagatagtaaggggcaaaattcatatattttaatcactggaattcaatttttaaatttta 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500  tagatagtaaggggcaaaattcatatattttaatcactggaattcaatttttaaatttta 559

                                                                        
Query: 560  aacaatcaattattcaagtttcaaccaattattcattcactgatattagatttgaatcat 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560  aacaatcaattattcaagtttcaaccaattattcattcactgatattagatttgaatcat 619

                                                                        
Query: 620  gtataattgatcaatacaattcaaataattcaatgattgaaattaataaattaattagtc 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620  gtataattgatcaatacaattcaaataattcaatgattgaaattaataaattaattagtc 679

                                                                        
Query: 680  annnnnnnnnngttattcaattttttgtaanacttcnactgttaaaattgatgcaacctt 739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680  annnnnnnnnngttattcaattttttgtaanacttcnactgttaaaattgatgcaacctt 739

                                                                        
Query: 740  taaggnatcaacatttacttgngntcagngtaanatggttttaggtcaaaatcaaatttg 799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  taaggnatcaacatttacttgngntcagngtaanatggttttaggtcaaaatcaaatttg 799

                                                                        
Query: 800  nagtgttggtggaagttcagtttcaagcncaacttctgcttntggttcaagtttgtctgt 859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800  nagtgttggtggaagttcagtttcaagcncaacttctgcttntggttcaagtttgtctgt 859

                                                                        
Query: 860  aagtagnagtggnngtcaatcattaactgtcncttcaacaagttcaactcctcaaacttt 919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  aagtagnagtggnngtcaatcattaactgtcncttcaacaagttcaactcctcaaacttt 919

                                                                        
Query: 920  tggnacaggttcaagttcaagnacaagttcaaggacaggttcaagnacaagttcaaattt 979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  tggnacaggttcaagttcaagnacaagttcaaggacaggttcaagnacaagttcaaattt 979

                                                                        
Query: 980  tcatactattattactaccccnacnactggngnatttaatcnattatccccntcnttttc 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  tcatactattattactaccccnacnactggngnatttaatcnattatccccntcnttttc 1039

                                                                  
Query: 1040 nattttaantttcnttattttantatcnntacctttaantcnatccttttaacc 1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 nattttaantttcnttattttantatcnntacctttaantcnatccttttaacc 1093


 Score =  438 bits (221), Expect = e-123
 Identities = 221/221 (100%)
 Strand = Plus / Plus

                                                                       
Query: 135 atcatcaggtacaacagttagtgatgttacattaatagtaaatttaaataataataatag 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atcatcaggtacaacagttagtgatgttacattaatagtaaatttaaataataataatag 194

                                                                       
Query: 195 ttatccagttaatgggtcatgtggtagtagtactcaattaacatgtaataatataaatga 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttatccagttaatgggtcatgtggtagtagtactcaattaacatgtaataatataaatga 254

                                                                       
Query: 255 tgcaattaattattttaatactattgcagtaaatgttaatagaagttcatcacaaatcat 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgcaattaattattttaatactattgcagtaaatgttaatagaagttcatcacaaatcat 314

                                                    
Query: 315 ttatcaacaattgaatcttttattagatgatggtaattatt 355
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttatcaacaattgaatcttttattagatgatggtaattatt 355


>Contig-U01571-1 (Contig-U01571-1Q) /CSM_Contig/Contig-U01571-1Q.Seq.d
          Length = 314

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 173 taaatttaaataataataatagtt 196
           ||||||||||||||||||||||||
Sbjct: 89  taaatttaaataataataatagtt 112


>Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Contig-U11815-1Q.Seq.d
          Length = 2500

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 173  taaatttaaataataataata 193
            |||||||||||||||||||||
Sbjct: 1028 taaatttaaataataataata 1048


 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 659  aaattaataaattaa 673
            |||||||||||||||
Sbjct: 2444 aaattaataaattaa 2458


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,336
Number of Sequences: 6905
Number of extensions: 32336
Number of successful extensions: 10734
Number of sequences better than 10.0: 865
length of query: 1167
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1151
effective length of database: 5,564,391
effective search space: 6404614041
effective search space used: 6404614041
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12363-1 (Contig-U12363-1Q) /CSM_Contig/Contig-U12363-1Q.Seq.d
         (1167 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ417711) Dictyostelium discoideum cDNA clone:ddv28d18, 5' ...   597   0.0    2
(BJ423858) Dictyostelium discoideum cDNA clone:ddv50k13, 5' ...   436   0.0    2
(BJ442673) Dictyostelium discoideum cDNA clone:ddv50k13, 3' ...   504   e-138  1
(BJ435821) Dictyostelium discoideum cDNA clone:ddv28d18, 3' ...   389   e-103  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   2e-05  10
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    38   0.002  9
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    40   0.005  10
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    42   0.007  11
(AM447509) Vitis vinifera contig VV78X189462.14, whole genom...    44   0.009  2
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    32   0.009  9
(CT547661) A BAC library has been constructed from cultivar ...    44   0.010  2
(AP007800) Lotus japonicus genomic DNA, chromosome 2, clone:...    48   0.023  6
(AC176422) Strongylocentrotus purpuratus clone R3-12F6, WORK...    38   0.023  6
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.025  9
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...    34   0.034  5
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   0.037  10
(CU693379) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.048  1
(AY675425) Phengaris daitozanus voucher SY03A503 cytochrome ...    42   0.050  3
(D31785) Pichia canadensis mitochondrial genomic DNA, comple...    36   0.060  7
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.11   9
(AU051847) Dictyostelium discoideum slug cDNA, clone SSB162.       40   0.12   2
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    36   0.13   12
(AC145383) Oryza sativa chromosome 3 BAC OSJNBa0038E17 genom...    36   0.16   7
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   0.18   5
(EF514212) Solanum tuberosum strain P6/210 contig R1, comple...    50   0.19   1
(C23784) Dictyostelium discoideum gamete cDNA, clone FC-AJ06.      50   0.19   1
(BJ360322) Dictyostelium discoideum cDNA clone:ddc5e17, 5' e...    50   0.19   1
(CC753531) ZMMBBb0135I12.f ZMMBBb Zea mays subsp. mays genom...    42   0.20   2
(EJ817809) 1093017524030 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.20   2
(CR376800) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.21   3
(EJ817393) 1093017522110 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.22   2
(AM461859) Vitis vinifera contig VV78X074153.3, whole genome...    36   0.32   4
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    32   0.33   10
(AC176227) Strongylocentrotus purpuratus clone R3-3062M17, W...    44   0.34   4
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    36   0.46   11
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    38   0.51   7
(AU071589) Dictyostelium discoideum slug cDNA, clone SSB842.       32   0.57   3
(AB030033) Dictyostelium discoideum gene for AmiB, complete ...    34   0.58   5
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          38   0.61   13
(BX927066) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   0.71   6
(AC102235) Mus musculus chromosome 3, clone RP24-97D20, comp...    48   0.75   1
(AC111937) Rattus norvegicus clone CH230-237I2, *** SEQUENCI...    48   0.75   1
(EK377009) 1095469444951 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.75   1
(AU071527) Dictyostelium discoideum slug cDNA, clone SSB737.       48   0.75   1
(BB978239) Plasmodium berghei strain ANKA cDNA clone:OK00827...    48   0.75   1
(AA420937) CpEST.384 uniZAPCpIOWAsporoLib3 Cryptosporidium p...    48   0.75   1
(AA397503) CpEST.282 uniZAPCpIOWAsporoLib3 Cryptosporidium p...    48   0.75   1
(AC214972) Nomascus leucogenys chromosome UNK clone CH271-67...    38   0.95   3
(AL356288) Human DNA sequence from clone RP11-6E3 on chromos...    32   1.00   9
(AC231666) Solanum tuberosum chromosome 11 clone RH052D21, c...    36   1.0    6
(AL732379) Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of...    36   1.0    5
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    36   1.0    7
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    32   1.1    8
(DX524401) GH_MBb0046L11f GH_MBb Gossypium hirsutum genomic ...    34   1.1    3
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    38   1.1    6
(CR848746) Zebrafish DNA sequence from clone CH211-269K10 in...    44   1.1    4
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    34   1.2    9
(AF362369) Dictyostelium discoideum histidine kinase DhkG (d...    38   1.2    4
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   1.2    17
(AM450609) Vitis vinifera contig VV78X048548.7, whole genome...    36   1.3    4
(AC134889) Mus musculus chromosome UNK clone RP24-347A5, WOR...    40   1.3    6
(AC181186) Strongylocentrotus purpuratus clone R3-14A24, WOR...    34   1.3    8
(AP006431) Lotus japonicus genomic DNA, chromosome 5, clone:...    38   1.3    6
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    36   1.4    8
(AA257183) SWMFCA1470SK Brugia malayi microfilaria cDNA (SAW...    38   1.4    2
(EC819436) SME00008557 esmbsro2 Sawyeria marylandensis cDNA,...    34   1.4    3
(AM468923) Vitis vinifera contig VV78X152168.3, whole genome...    40   1.5    2
(L06178) Apis mellifera ligustica complete mitochondrial gen...    36   1.5    6
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    40   1.5    10
(EH385355) 777 E. acervulina cDNA from second generation mer...    44   1.5    2
(CR848665) Zebrafish DNA sequence from clone CH211-276C2 in ...    36   1.5    2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   1.5    14
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    44   1.6    8
(EK145988) 1095456022726 Global-Ocean-Sampling_GS-31-01-01-1...    32   1.8    3
(AM477868) Vitis vinifera contig VV78X006566.2, whole genome...    36   1.9    2
(EI457750) PV_GBa0059P07.r PV_GBa Phaseolus vulgaris genomic...    32   2.0    2
(CA920424) EST638142 MTUS Medicago truncatula cDNA clone MTU...    34   2.0    2
(AM682258) Entamoeba terrapinae GSS, clone terra238d06.p1k.        40   2.0    2
(AW775944) EST335009 DSIL Medicago truncatula cDNA clone pDS...    34   2.0    2
(BF005215) EST433713 DSLC Medicago truncatula cDNA clone pDS...    34   2.0    2
(EA729152) Sequence 108031 from patent US 7365185.                 34   2.0    2
(CR336956) mte1-68O19RM1 BAC end, cultivar Jemalong A17 of M...    34   2.0    2
(BM813807) EST591900 BNIR Medicago truncatula/Meloidogyne in...    34   2.1    2
(AJ501205) Medicago truncatula EST, clone mtgmadc120004a07.        34   2.1    2
(BF817794) MR2-CI0127-131200-004-f03 CI0127 Homo sapiens cDN...    36   2.1    2
(AL388648) Medicago truncatula EST MtBC49H06R1 : T7 end of c...    34   2.1    2
(AC155881) Medicago truncatula chromosome 7 clone mte1-60d3,...    40   2.1    6
(AL929161) Zebrafish DNA sequence from clone CH211-93A19 in ...    36   2.1    7
(AW329548) N200796e rootphos(-) Medicago truncatula cDNA clo...    34   2.1    2
(AV219279) Mus musculus 12 days embryo head cDNA, RIKEN full...    36   2.1    2
(BK006346) TPA_exp: Apis mellifera sex determination locus, ...    30   2.2    7
(EU180087) Xylocopa watmoughi cytochrome oxidase subunit 1 (...    42   2.2    2
(EU180083) Xylocopa caffra cytochrome oxidase subunit 1 (CO1...    42   2.2    2
(AY005242) Xylocopa acutipennis cytochrome oxidase subunit 1...    42   2.2    2
(AY005241) Xylocopa latipes cytochrome oxidase subunit 1 (CO...    42   2.2    2
(AY675421) Pseudophilotes vicrama voucher NK00P753 cytochrom...    34   2.2    3
(AX345955) Sequence 1026 from Patent WO0200928.                    40   2.3    4
(CU062478) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   2.5    6
(EI498921) PV_GBa0118B03.f PV_GBa Phaseolus vulgaris genomic...    38   2.5    2
(AF442957) Ostrinia nubilalis mitochondrion, complete genome.      32   2.6    5

>(BJ417711) Dictyostelium discoideum cDNA clone:ddv28d18, 5' end,
           single read.
          Length = 649

 Score =  597 bits (301), Expect(2) = 0.0
 Identities = 301/301 (100%)
 Strand = Plus / Plus


Query: 380 ttaatttatatcaatttaatataacaatttcaccattaaatccaagttcaaataaagtta 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttaatttatatcaatttaatataacaatttcaccattaaatccaagttcaaataaagtta 408


Query: 440 taattaatggtttaaattcaaattcatcaatgttttctgtaactccatttaatggtattg 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taattaatggtttaaattcaaattcatcaatgttttctgtaactccatttaatggtattg 468


Query: 500 tagatagtaaggggcaaaattcatatattttaatcactggaattcaatttttaaatttta 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tagatagtaaggggcaaaattcatatattttaatcactggaattcaatttttaaatttta 528


Query: 560 aacaatcaattattcaagtttcaaccaattattcattcactgatattagatttgaatcat 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aacaatcaattattcaagtttcaaccaattattcattcactgatattagatttgaatcat 588


Query: 620 gtataattgatcaatacaattcaaataattcaatgattgaaattaataaattaattagtc 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gtataattgatcaatacaattcaaataattcaatgattgaaattaataaattaattagtc 648


Query: 680 a 680
           |
Sbjct: 649 a 649

 Score =  430 bits (217), Expect(2) = 0.0
 Identities = 219/220 (99%)
 Strand = Plus / Plus


Query: 136 tcatcaggtacaacagttagtgatgttacattaatagtaaatttaaataataataatagt 195
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tcatcaggtncaacagttagtgatgttacattaatagtaaatttaaataataataatagt 164


Query: 196 tatccagttaatgggtcatgtggtagtagtactcaattaacatgtaataatataaatgat 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tatccagttaatgggtcatgtggtagtagtactcaattaacatgtaataatataaatgat 224


Query: 256 gcaattaattattttaatactattgcagtaaatgttaatagaagttcatcacaaatcatt 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gcaattaattattttaatactattgcagtaaatgttaatagaagttcatcacaaatcatt 284


Query: 316 tatcaacaattgaatcttttattagatgatggtaattatt 355
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tatcaacaattgaatcttttattagatgatggtaattatt 324

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,034,170,369
Number of extensions: 74483254
Number of successful extensions: 9277637
Number of sequences better than 10.0: 216
Length of query: 1167
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1143
Effective length of database: 97,308,875,965
Effective search space: 111224045227995
Effective search space used: 111224045227995
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12363-1 (Contig-U12363-1Q) /CSM_Contig/Contig-U12363-1Q.Seq.d
         (1167 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_14(AC116986|pid:none) Dictyostelium discoideum chromoso...    87   1e-15
AC116982_12(AC116982|pid:none) Dictyostelium discoideum chromoso...    70   2e-10
AL844508_66(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    39   0.46
AF091239_1(AF091239|pid:none) Plasmodium falciparum c-13 antigen...    37   1.0
AL844509_417(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.4
BX936398_2025(BX936398|pid:none) Yersinia pseudotuberculosis IP3...    36   2.3
AC117267_3(AC117267|pid:none) Dictyostelium discoideum chromosom...    35   3.9
AE001362_61(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    35   3.9
AD0249(AD0249) probable hemolysin activator protein YPO2044 [imp...    35   5.1
AE009952_2232(AE009952|pid:none) Yersinia pestis KIM, complete g...    35   5.1
CP001227_462(CP001227|pid:none) Rickettsia peacockii str. Rustic...    35   5.1
(Q55GF9) RecName: Full=Inner centromere protein A; AltName: Full...    35   6.7
AL844508_260(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    34   8.8
BA000026_384(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    34   8.8
BA000016_558(BA000016|pid:none) Clostridium perfringens str. 13 ...    34   8.8

>AC116986_14(AC116986|pid:none) Dictyostelium discoideum chromosome
           2 map 2234041-2567370 strain AX4, complete sequence.
          Length = 523

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 22/191 (11%)
 Frame = +1

Query: 154 SDVTLIVXXXXXXS---YPVNGSCGSSTQLTCNNINDAINYFNTIAVNVNRSSSQIIYQQ 324
           + +TLIV      +   Y     CG  T   C +INDAI YFNTIA+    +++++ YQQ
Sbjct: 29  NSITLIVDPFSNKNINFYKSGEKCGD-THNRCKSINDAILYFNTIAI-ATPNNNKLSYQQ 86

Query: 325 LNLLLDDGNYSXXXXXXXINLYQFNITISPLNPSSNKVIINGLNS------NSSMFSVTP 486
           LNL L DG YS        NL++FNI I P N +S KV+ +G NS      N+++F V P
Sbjct: 87  LNLQLADGIYSTTEYS--FNLFEFNINIEPFNKNSKKVVFDGSNSSNKNNNNNALFYVEP 144

Query: 487 FNGIVDSKGQN-----------SYILITGIQFLNFKQSIIQVS--TNYSFTDIRFESCII 627
            +       +            S I I+ I F++F  +II++    + S+  I   +C+
Sbjct: 145 VSNTTSLPFKKRTINSATTSILSSISISDITFISFSNTIIKIDNRNDDSYNIININNCVF 204

Query: 628 DQYNSNNSMIE 660
             + S+   IE
Sbjct: 205 KNFTSSPQKIE 215

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 844,003,322
Number of extensions: 11103362
Number of successful extensions: 37874
Number of sequences better than 10.0: 15
Number of HSP's gapped: 37827
Number of HSP's successfully gapped: 15
Length of query: 389
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 259
Effective length of database: 630,428,194
Effective search space: 163280902246
Effective search space used: 163280902246
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.00  gvh: 0.60  alm: 0.26  top: 0.27  tms: 0.07  mit: 0.33  mip: 0.13
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U12363-1 is end
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0