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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12357-1
Contig ID Contig-U12357-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12357-1 (Contig-U12357-1Q) /CSM_Contig/Contig-U12357-1Q.Seq.d
TTGGCCTACTGGCATTAAACAAACCTCTGTACCTANATACAAGTTTTATT
TCAAAGGTTTTAACAAACTGCAAAATTCGATTTCTCAAATAGCCAATATC
AAGAGATCTTTATCTATCTCTCACAATTCTACAAGAGTCACCTCGATTTC
AAAAATATTTCAAACTATGTTACAATTACTGGTTCCTTGGCTTATGTTAC
TTCTAGTCCAATCTTTGGATTCTATGGGGATACTCGTCTTCAGTCAATTT
TAATACTTTCACTTTTAGAAAGTGGAAAGACATCACATAAAGATCATCCA
CTCTTGGAACGTTTAATAAGTGGNTTAGCTCATTTTGTAAATAAAGAAGG
TCGTTATGGTACTACTCAAGCCAATGCATTCAATATCTTTGCAATCTCTC
AATATGAAAAGATGAAATTATCAGGTGAAAAAGTTGATCCAACATTGGAT
GCAAGTATTATTTTAGGAAATCGCTATTNGGAAAAGAAAAAAGNNNCANT
NGNNGATTCANAAAATNATNCNNNNNCTGNNCCTTNCTNTNNNANNCTAN
NGANNNNNNNNCCNNNNNNNNN----------CTCAATATGAAAAGATGA
AATTATCAGGTGAAAAAGTTGATCCAACATTGGATGCAAGTATTATTTTA
GGAAATCGCTATTTGGAAAAGAAAAAAGTAACAATTGGTGATTCAGAAAA
TTATACAATCACTGTACCTTTCTCTCAAATCCTAAAGAATCAAAAACCAT
TGATAATTCAAAGAAAAACAAAAGGTACCCTTTATTATAGCATAAATCTC
TCCTATGCTTCATTGAATCCAATCTCTAAAGCTATCTTTAATAGAGGTCT
CAATATTAAAAGAACCTATTATCCAGTTTCAAATTCAAATGATGTTATTT
ATCATTCTCCAATTGGTGTTGACCAACCTCAAACCATTGAAATCAAAGCA
GGTTCAAGAGTAAAGGTAACACTTTCAATAAAGGTCGATCATGTTTCTAG
CTTTATAGTTATTAAAGATAGATTACCAAGTGGTTTGGAACCATTACTTT
CAAATTCCTATTATCACAATGGTTATTATTTCAATCATGTTAATAATCGT
GAAAATGGTGTTGAAATTTATTCAAATCTTTTATATCCAGGTGTTTATAA
TTATTCCTATCAAACTATTGCAATTACACGTGGTACTTTTATTTCACCAT
CAGCAAAAATTGAAGAAATGTATTGTCCTGCAACTTTTGGTCGTTCTTCT
TCAGAAATTGTATTAATTAAATAAATTGTTGTCATTAATTCCAATCAAAA
AAATAAATAAAATAATAAAATAAAATTTATTAATTTTCCAACT
Gap gap included
Contig length 1333
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2827305
End point 2828232
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 6
Link to clone list U12357
List of clone(s) 

est1=VFM325F,1,563
est2=AHN420Z,564,1325
est3=AHO287Z,564,1313
est4=VHA193Z,603,1328
est5=VFM325Z,656,1313
est6=SSK722F,677,1307
Translated Amino Acid sequence 
laywh*tnlctxiqvlfqrf*QTAKFDFSNSQYQEIFIYLSQFYKSHLDFKNISNYVTIT
GSLAYVTSSPIFGFYGDTRLQSILILSLLESGKTSHKDHPLLERLISGLAHFVNKEGRYG
TTQANAFNIFAISQYEKMKLSGEKVDPTLDASIILGNRYXEKKKXXXXDSXNXXXXXPXX
XXLXXXXPXX---

---QYEKMKLSGEKVDPTLDASIILGNRYLEKKKVTIGDSENYTITVPFSQILKNQKPLI
IQRKTKGTLYYSINLSYASLNPISKAIFNRGLNIKRTYYPVSNSNDVIYHSPIGVDQPQT
IEIKAGSRVKVTLSIKVDHVSSFIVIKDRLPSGLEPLLSNSYYHNGYYFNHVNNRENGVE
IYSNLLYPGVYNYSYQTIAITRGTFISPSAKIEEMYCPATFGRSSSEIVLIK*ivvinsn
qknk*nnkikfinfpt
Translated Amino Acid sequence (All Frames) 
Frame A:
laywh*tnlctxiqvlfqrf*QTAKFDFSNSQYQEIFIYLSQFYKSHLDFKNISNYVTIT
GSLAYVTSSPIFGFYGDTRLQSILILSLLESGKTSHKDHPLLERLISGLAHFVNKEGRYG
TTQANAFNIFAISQYEKMKLSGEKVDPTLDASIILGNRYXEKKKXXXXDSXNXXXXXPXX
XXLXXXXPXX---

---lnmkr*nyqvkkliqhwmqvlf*eiaiwkrkk*qlviqkiiqslylslks*riknh*
*fkekqkvpfiia*ispmlh*iqslklslievsilkepiiqfqiqmmlfiilqlvltnlk
plkskqvqe*r*hfq*rsimflal*llkidyqvvwnhyfqipiitmviisimliivkmvl
kfiqifyiqvfiiipikllqlhvvllfhhqqklkkcivlqllvvllqkly*lnkllslip
ikkinkiik*nllifq

Frame B:
wptgikqtsvpxykfyfkgfnklqnsisqianikrslsishnstrvtsiskifqtmlqll
vpwlmlllvqsldsmgilvfsqf*yfhf*kverhhikiihswnv**vx*lil*ikkvvmv
llkpmhsislqslnmkr*nyqvkkliqhwmqvlf*eiaixkrkkxxxxixkxxxxlxlxx
xxxxxxxxxx---

---si*kdeiir*ks*snigckyyfrkslfgkeksnnw*frklynhctflsnpkesktid
nskknkrypll*hksllcfiesnl*syl**rsqy*knllssfkfk*cylsfsnwc*ptsn
h*nqsrfkskgntfnkgrscf*lysy*r*itkwfgtitfkfllsqwllfqsc**s*kwc*
nlfksfisrcl*lflsnycnytwyfyftiskn*rnvlscnfwsfffrncin*incch*fq
skk*ik**nkiy*fsn

Frame C:
gllalnkplylxtsfiskvltnckirflk*pisrdlylsltilqesprfqkyfklcynyw
flglcyf*snlwilwgysssvnfntftfrkwkdit*rsstlgtfnkwxssfck*rrslwy
yssqciqylcnlsi*kdeiir*ks*snigckyyfrkslxgkekxxxxxfxkxxxxxxxlx
xxxxxxxxxx---

---QYEKMKLSGEKVDPTLDASIILGNRYLEKKKVTIGDSENYTITVPFSQILKNQKPLI
IQRKTKGTLYYSINLSYASLNPISKAIFNRGLNIKRTYYPVSNSNDVIYHSPIGVDQPQT
IEIKAGSRVKVTLSIKVDHVSSFIVIKDRLPSGLEPLLSNSYYHNGYYFNHVNNRENGVE
IYSNLLYPGVYNYSYQTIAITRGTFISPSAKIEEMYCPATFGRSSSEIVLIK*ivvinsn
qknk*nnkikfinfpt
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12357-1 (Contig-U12357-1Q)
/CSM_Contig/Contig-U12357-1Q.Seq.d
         (1343 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12357-1 (Contig-U12357-1Q) /CSM_Contig/Conti...  1415  0.0
Contig-U11450-1 (Contig-U11450-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09433-1 (Contig-U09433-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14115-1 (Contig-U14115-1Q) /CSM_Contig/Conti...    34  0.38
Contig-U13553-1 (Contig-U13553-1Q) /CSM_Contig/Conti...    34  0.38
Contig-U12328-1 (Contig-U12328-1Q) /CSM_Contig/Conti...    34  0.38
Contig-U11737-1 (Contig-U11737-1Q) /CSM_Contig/Conti...    34  0.38
Contig-U14249-1 (Contig-U14249-1Q) /CSM_Contig/Conti...    30  5.9

>Contig-U12357-1 (Contig-U12357-1Q) /CSM_Contig/Contig-U12357-1Q.Seq.d
          Length = 1343

 Score = 1415 bits (714), Expect = 0.0
 Identities = 714/714 (100%)
 Strand = Plus / Plus

                                                                        
Query: 583  ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583  ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 642

                                                                        
Query: 643  ttattttaggaaatcgctatttggaaaagaaaaaagtaacaattggtgattcagaaaatt 702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  ttattttaggaaatcgctatttggaaaagaaaaaagtaacaattggtgattcagaaaatt 702

                                                                        
Query: 703  atacaatcactgtacctttctctcaaatcctaaagaatcaaaaaccattgataattcaaa 762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  atacaatcactgtacctttctctcaaatcctaaagaatcaaaaaccattgataattcaaa 762

                                                                        
Query: 763  gaaaaacaaaaggtaccctttattatagcataaatctctcctatgcttcattgaatccaa 822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  gaaaaacaaaaggtaccctttattatagcataaatctctcctatgcttcattgaatccaa 822

                                                                        
Query: 823  tctctaaagctatctttaatagaggtctcaatattaaaagaacctattatccagtttcaa 882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  tctctaaagctatctttaatagaggtctcaatattaaaagaacctattatccagtttcaa 882

                                                                        
Query: 883  attcaaatgatgttatttatcattctccaattggtgttgaccaacctcaaaccattgaaa 942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  attcaaatgatgttatttatcattctccaattggtgttgaccaacctcaaaccattgaaa 942

                                                                        
Query: 943  tcaaagcaggttcaagagtaaaggtaacactttcaataaaggtcgatcatgtttctagct 1002
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  tcaaagcaggttcaagagtaaaggtaacactttcaataaaggtcgatcatgtttctagct 1002

                                                                        
Query: 1003 ttatagttattaaagatagattaccaagtggtttggaaccattactttcaaattcctatt 1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 ttatagttattaaagatagattaccaagtggtttggaaccattactttcaaattcctatt 1062

                                                                        
Query: 1063 atcacaatggttattatttcaatcatgttaataatcgtgaaaatggtgttgaaatttatt 1122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 atcacaatggttattatttcaatcatgttaataatcgtgaaaatggtgttgaaatttatt 1122

                                                                        
Query: 1123 caaatcttttatatccaggtgtttataattattcctatcaaactattgcaattacacgtg 1182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1123 caaatcttttatatccaggtgtttataattattcctatcaaactattgcaattacacgtg 1182

                                                                        
Query: 1183 gtacttttatttcaccatcagcaaaaattgaagaaatgtattgtcctgcaacttttggtc 1242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 gtacttttatttcaccatcagcaaaaattgaagaaatgtattgtcctgcaacttttggtc 1242

                                                                  
Query: 1243 gttcttcttcagaaattgtattaattaaataaattgttgtcattaattccaatc 1296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1243 gttcttcttcagaaattgtattaattaaataaattgttgtcattaattccaatc 1296


 Score =  959 bits (484), Expect = 0.0
 Identities = 493/493 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcctactggcattaaacaaacctctgtacctanatacaagttttatttcaaaggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttggcctactggcattaaacaaacctctgtacctanatacaagttttatttcaaaggttt 60

                                                                       
Query: 61  taacaaactgcaaaattcgatttctcaaatagccaatatcaagagatctttatctatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taacaaactgcaaaattcgatttctcaaatagccaatatcaagagatctttatctatctc 120

                                                                       
Query: 121 tcacaattctacaagagtcacctcgatttcaaaaatatttcaaactatgttacaattact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcacaattctacaagagtcacctcgatttcaaaaatatttcaaactatgttacaattact 180

                                                                       
Query: 181 ggttccttggcttatgttacttctagtccaatctttggattctatggggatactcgtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggttccttggcttatgttacttctagtccaatctttggattctatggggatactcgtctt 240

                                                                       
Query: 241 cagtcaattttaatactttcacttttagaaagtggaaagacatcacataaagatcatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagtcaattttaatactttcacttttagaaagtggaaagacatcacataaagatcatcca 300

                                                                       
Query: 301 ctcttggaacgtttaataagtggnttagctcattttgtaaataaagaaggtcgttatggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcttggaacgtttaataagtggnttagctcattttgtaaataaagaaggtcgttatggt 360

                                                                       
Query: 361 actactcaagccaatgcattcaatatctttgcaatctctcaatatgaaaagatgaaatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actactcaagccaatgcattcaatatctttgcaatctctcaatatgaaaagatgaaatta 420

                                                                       
Query: 421 tcaggtgaaaaagttgatccaacattggatgcaagtattattttaggaaatcgctattng 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaggtgaaaaagttgatccaacattggatgcaagtattattttaggaaatcgctattng 480

                        
Query: 481 gaaaagaaaaaag 493
           |||||||||||||
Sbjct: 481 gaaaagaaaaaag 493


 Score =  184 bits (93), Expect = 2e-46
 Identities = 95/96 (98%)
 Strand = Plus / Plus

                                                                       
Query: 398 ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 642

                                               
Query: 458 ttattttaggaaatcgctattnggaaaagaaaaaag 493
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 643 ttattttaggaaatcgctatttggaaaagaaaaaag 678


 Score =  184 bits (93), Expect = 2e-46
 Identities = 95/96 (98%)
 Strand = Plus / Plus

                                                                       
Query: 583 ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 642
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 457

                                               
Query: 643 ttattttaggaaatcgctatttggaaaagaaaaaag 678
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 458 ttattttaggaaatcgctattnggaaaagaaaaaag 493


 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1327 ttattaattttccaact 1343
            |||||||||||||||||
Sbjct: 1327 ttattaattttccaact 1343


>Contig-U11450-1 (Contig-U11450-1Q) /CSM_Contig/Contig-U11450-1Q.Seq.d
          Length = 2124

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  atttcaaaggttttaacaaa 67
           ||||||||||||||||||||
Sbjct: 801 atttcaaaggttttaacaaa 820


>Contig-U09433-1 (Contig-U09433-1Q) /CSM_Contig/Contig-U09433-1Q.Seq.d
          Length = 862

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1257 attgtattaattaaataaattgtt 1280
            |||||||||||||||||| |||||
Sbjct: 374  attgtattaattaaataatttgtt 351


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,497
Number of Sequences: 6905
Number of extensions: 18497
Number of successful extensions: 1982
Number of sequences better than 10.0: 187
length of query: 1343
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1327
effective length of database: 5,564,391
effective search space: 7383946857
effective search space used: 7383946857
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12357-1 (Contig-U12357-1Q) /CSM_Contig/Contig-U12357-1Q.Seq.d
         (1343 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ356311) Dictyostelium discoideum cDNA clone:dda59m22, 3' ...  1332   0.0    1
(BJ355443) Dictyostelium discoideum cDNA clone:dda57h06, 3' ...  1332   0.0    1
(BJ436660) Dictyostelium discoideum cDNA clone:ddv31i23, 3' ...  1233   0.0    1
(BJ434877) Dictyostelium discoideum cDNA clone:ddv25b07, 3' ...  1150   0.0    1
(C94029) Dictyostelium discoideum slug cDNA, clone SSK722.       1053   0.0    1
(BJ416189) Dictyostelium discoideum cDNA clone:ddv25b07, 5' ...   959   0.0    1
(AU074442) Dictyostelium discoideum slug cDNA, clone SSK722.      333   1e-86  1
(AC126982) Rattus norvegicus clone CH230-39J5, *** SEQUENCIN...    40   0.073  4
(CR548629) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.089  4
(AC079292) Homo sapiens chromosome 8 clone RP11-1141F24 map ...    48   0.21   3
(BX950197) Zebrafish DNA sequence from clone CH211-123N8 in ...    44   0.29   3
(BJ392024) Dictyostelium discoideum cDNA clone:dds26h04, 5' ...    40   0.79   2
(AC024817) Caenorhabditis elegans cosmid Y54G2A, complete se...    34   0.80   8
(AC108935) Homo sapiens BAC clone RP11-503L19 from 4, comple...    48   0.87   1
(AC026553) Homo sapiens chromosome 4 clone RP11-503L19 map 4...    48   0.87   1
(AZ346614) 1M0081J09R Mouse 10kb plasmid UUGC1M library Mus ...    48   0.87   1
(ER804529) PPTEJ22TR Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.87   1
(BW050499) Ciona intestinalis cDNA, clone:cibd006j09, 5' end...    36   1.7    3
(BW044818) Ciona intestinalis cDNA, clone:cibd056n22, 5' end...    36   1.9    3
(CC273807) CH261-121B19_RM1.1 CH261 Gallus gallus genomic cl...    36   2.3    2
(AC147641) Mus musculus BAC clone RP23-43L22 from 14, comple...    46   3.4    1
(AC147628) Mus musculus BAC clone RP24-476D20 from chromosom...    46   3.4    1
(AP009783) Lotus japonicus genomic DNA, chromosome 2, clone:...    46   3.4    1
(GC527569) Sequence 1079 from patent US 7411051.                   46   3.4    1
(EA744830) Sequence 1079 from patent US 7368531.                   46   3.4    1
(BD135366) 110 human secretory proteins.                           46   3.4    1
(AC188930) Canis Familiaris chromosome 14, clone XX-451E23, ...    46   3.4    1
(AC105231) Homo sapiens chromosome 15, clone RP11-24F15, com...    46   3.4    1
(AC138049) Canis familiaris clone RP81-287P13, WORKING DRAFT...    46   3.4    1
(AC118453) Rattus norvegicus clone CH230-217C17, *** SEQUENC...    46   3.4    1
(AC110277) Homo sapiens chromosome 15 clone RP11-597P22 map ...    46   3.4    1
(AC097094) Rattus norvegicus clone CH230-207L23, WORKING DRA...    46   3.4    1
(AP010306) Lotus japonicus genomic DNA, chromosome 5, clone:...    46   3.4    1
(AL356482) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   3.4    1
(AC221869) Bos taurus clone CH240-380D4, WORKING DRAFT SEQUE...    46   3.4    1
(AC010866) Homo sapiens chromosome 15 clone RP11-194N7, 82 u...    46   3.4    1
(EB306362) CNSN01-F-066799-501 Normalized CNS library (juven...    46   3.4    1
(AE017321) Wolbachia endosymbiont strain TRS of Brugia malay...    46   3.4    1
(AE017308) Mycoplasma mobile 163K complete genome.                 40   3.6    17
(AC164784) Bos taurus clone CH240-154O20, *** SEQUENCING IN ...    38   4.2    4
(CU694678) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   6.0    6
(AC139824) Homo sapiens chromosome 5 clone RP11-291C13, WORK...    34   6.3    2
(AC204496) Macaca mulatta  BAC CH250-6F1 () complete sequence.     34   6.3    2
(AC100782) Homo sapiens, clone RP11-300E4, complete sequence.      34   6.3    2
(AC020570) Homo sapiens chromosome 8 clone RP11-300E4, WORKI...    34   6.3    2
(CR848026) Zebrafish DNA sequence from clone CH211-188C16 in...    34   6.5    2
(AF039043) Caenorhabditis elegans cosmid F39C12, complete se...    32   7.0    2
(AF166167) Caenorhabditis elegans adducin-related protein (a...    32   8.1    2
(AF166168) Caenorhabditis elegans adducin-related protein (a...    32   8.2    2
(BJ145466) Caenorhabditis elegans cDNA clone:yk1219a11 : 3' ...    32   8.6    2
(CW443586) fsbb001f163m05k0 Sorghum methylation filtered lib...    32   8.6    2
(BJ778545) Caenorhabditis elegans cDNA clone:yk1401e03 : 3' ...    32   8.6    2
(BJ131381) Caenorhabditis elegans cDNA clone:yk1054b06 : 3' ...    32   8.7    2
(BJ139388) Caenorhabditis elegans cDNA clone:yk1146b11 : 3' ...    32   8.7    2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   9.6    13

>(BJ356311) Dictyostelium discoideum cDNA clone:dda59m22, 3' end,
            single read.
          Length = 750

 Score = 1332 bits (672), Expect = 0.0
 Identities = 672/672 (100%)
 Strand = Plus / Minus


Query: 583  ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 691


Query: 643  ttattttaggaaatcgctatttggaaaagaaaaaagtaacaattggtgattcagaaaatt 702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  ttattttaggaaatcgctatttggaaaagaaaaaagtaacaattggtgattcagaaaatt 631


Query: 703  atacaatcactgtacctttctctcaaatcctaaagaatcaaaaaccattgataattcaaa 762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630  atacaatcactgtacctttctctcaaatcctaaagaatcaaaaaccattgataattcaaa 571


Query: 763  gaaaaacaaaaggtaccctttattatagcataaatctctcctatgcttcattgaatccaa 822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570  gaaaaacaaaaggtaccctttattatagcataaatctctcctatgcttcattgaatccaa 511


Query: 823  tctctaaagctatctttaatagaggtctcaatattaaaagaacctattatccagtttcaa 882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510  tctctaaagctatctttaatagaggtctcaatattaaaagaacctattatccagtttcaa 451


Query: 883  attcaaatgatgttatttatcattctccaattggtgttgaccaacctcaaaccattgaaa 942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450  attcaaatgatgttatttatcattctccaattggtgttgaccaacctcaaaccattgaaa 391


Query: 943  tcaaagcaggttcaagagtaaaggtaacactttcaataaaggtcgatcatgtttctagct 1002
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390  tcaaagcaggttcaagagtaaaggtaacactttcaataaaggtcgatcatgtttctagct 331


Query: 1003 ttatagttattaaagatagattaccaagtggtttggaaccattactttcaaattcctatt 1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330  ttatagttattaaagatagattaccaagtggtttggaaccattactttcaaattcctatt 271


Query: 1063 atcacaatggttattatttcaatcatgttaataatcgtgaaaatggtgttgaaatttatt 1122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270  atcacaatggttattatttcaatcatgttaataatcgtgaaaatggtgttgaaatttatt 211


Query: 1123 caaatcttttatatccaggtgtttataattattcctatcaaactattgcaattacacgtg 1182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210  caaatcttttatatccaggtgtttataattattcctatcaaactattgcaattacacgtg 151


Query: 1183 gtacttttatttcaccatcagcaaaaattgaagaaatgtattgtcctgcaacttttggtc 1242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150  gtacttttatttcaccatcagcaaaaattgaagaaatgtattgtcctgcaacttttggtc 91


Query: 1243 gttcttcttcag 1254
            ||||||||||||
Sbjct: 90   gttcttcttcag 79

 Score =  184 bits (93), Expect = 6e-42
 Identities = 95/96 (98%)
 Strand = Plus / Minus


Query: 398 ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ctcaatatgaaaagatgaaattatcaggtgaaaaagttgatccaacattggatgcaagta 691


Query: 458 ttattttaggaaatcgctattnggaaaagaaaaaag 493
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 690 ttattttaggaaatcgctatttggaaaagaaaaaag 655

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,526,326,075
Number of extensions: 97908548
Number of successful extensions: 7563689
Number of sequences better than 10.0: 55
Length of query: 1343
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1319
Effective length of database: 97,308,875,965
Effective search space: 128350407397835
Effective search space used: 128350407397835
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12357-1 (Contig-U12357-1Q) /CSM_Contig/Contig-U12357-1Q.Seq.d
         (1343 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000951_2530(CP000951|pid:none) Synechococcus sp. PCC 7002, com...    84   2e-14
CP000478_2205(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    82   4e-14
CP000393_252(CP000393|pid:none) Trichodesmium erythraeum IMS101,...    81   1e-13
(Q8YM40) RecName: Full=UPF0192 protein all5100; Flags: Precursor...    80   2e-13
CP000155_6724(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    75   5e-12
CP001037_2919(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    72   3e-11
CP000117_2349(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    72   3e-11
CP001055_625(CP001055|pid:none) Elusimicrobium minutum Pei191, c...    70   1e-10
CP000686_2795(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    66   3e-09
CP000804_2538(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    61   8e-08
AM746676_4416(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    60   2e-07
CP001357_909(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    58   9e-07
CP001322_1572(CP001322|pid:none) Desulfatibacillum alkenivorans ...    57   2e-06
CP000240_2083(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1...    56   3e-06
CP000686_2127(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    55   4e-06
AE016825_2560(AE016825|pid:none) Chromobacterium violaceum ATCC ...    54   2e-05
AP006841_788(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ...    52   4e-05
CP001131_1827(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    49   3e-04
CP000251_2029(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    49   4e-04
CP001358_1277(CP001358|pid:none) Desulfovibrio desulfuricans sub...    49   4e-04
AE015924_1887(AE015924|pid:none) Porphyromonas gingivalis W83, c...    49   5e-04
CP000943_383(CP000943|pid:none) Methylobacterium sp. 4-46, compl...    46   0.004
CP000777_1202(CP000777|pid:none) Leptospira biflexa serovar Pato...    45   0.005
CP001349_1674(CP001349|pid:none) Methylobacterium nodulans ORS 2...    45   0.006
AE015928_4045(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    45   0.006
BX842646_269(BX842646|pid:none) Bdellovibrio bacteriovorus compl...    45   0.008
CP000804_3833(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    44   0.013
CP001098_959(CP001098|pid:none) Halothermothrix orenii H 168, co...    43   0.023
CP000139_1874(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    42   0.039
AE017282_1651(AE017282|pid:none) Methylococcus capsulatus str. B...    42   0.066
CU234118_3708(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...    41   0.086
BX294149_50(BX294149|pid:none) Rhodopirellula baltica SH 1 compl...    41   0.11
CP001029_1361(CP001029|pid:none) Methylobacterium populi BJ001, ...    40   0.15
CP000473_2273(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    40   0.15
CP000685_413(CP000685|pid:none) Flavobacterium johnsoniae UW101,...    40   0.25
CP001298_1563(CP001298|pid:none) Methylobacterium chloromethanic...    40   0.25
CP001001_1102(CP001001|pid:none) Methylobacterium radiotolerans ...    39   0.33
AL844509_328(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.43
CP000628_339(CP000628|pid:none) Agrobacterium radiobacter K84 ch...    39   0.56
CP000847_799(CP000847|pid:none) Rickettsia akari str. Hartford, ...    38   0.73
CP000283_2541(CP000283|pid:none) Rhodopseudomonas palustris BisB...    38   0.73
CP000250_2909(CP000250|pid:none) Rhodopseudomonas palustris HaA2...    37   1.2
AP009386_1215(AP009386|pid:none) Burkholderia multivorans ATCC 1...    37   1.2
CP000140_3639(CP000140|pid:none) Parabacteroides distasonis ATCC...    37   1.6
CP000571_1195(CP000571|pid:none) Burkholderia pseudomallei 668 c...    37   2.1
BX571966_836(BX571966|pid:none) Burkholderia pseudomallei strain...    37   2.1
CP000011_650(CP000011|pid:none) Burkholderia mallei ATCC 23344 c...    37   2.1
CP000573_1118(CP000573|pid:none) Burkholderia pseudomallei 1106a...    37   2.1
CP000545_768(CP000545|pid:none) Burkholderia mallei NCTC 10229 c...    37   2.1
CP000959_2530(CP000959|pid:none) Burkholderia cenocepacia MC0-3 ...    36   2.8
CP000379_824(CP000379|pid:none) Burkholderia cenocepacia AU 1054...    36   2.8
(Q9CMZ1) RecName: Full=UPF0192 protein PM0659; Flags: Precursor;...    36   3.6
CP001184_620(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    36   3.6
CP000661_14(CP000661|pid:none) Rhodobacter sphaeroides ATCC 1702...    36   3.6
CP000759_690(CP000759|pid:none) Ochrobactrum anthropi ATCC 49188...    35   4.7
CP000115_1528(CP000115|pid:none) Nitrobacter winogradskyi Nb-255...    35   6.2
CP000463_2698(CP000463|pid:none) Rhodopseudomonas palustris BisA...    35   8.1
CU928158_610(CU928158|pid:none) Escherichia fergusonii ATCC 3546...    35   8.1
CP000085_1576(CP000085|pid:none) Burkholderia thailandensis E264...    35   8.1

>CP000951_2530(CP000951|pid:none) Synechococcus sp. PCC 7002, complete
            genome.
          Length = 2027

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 8/222 (3%)
 Frame = +3

Query: 612  EKVDPTLDASIILGNRYLEKKKVTIGDSENYTITVPFSQILKNQKPLIIQRKTKGTLYYS 791
            E + P+L  +I L  + L +      ++ + T+ VP   + K  + LIIQ+   G L+Y
Sbjct: 1804 ESIPPSLSGAIKLDRKQLGEFNFQGYENPSATVDVPMQDLPKGNRDLIIQKDGDGKLHYL 1863

Query: 792  INLSYASLNPISKAIFNRGLNIKRTYYPVSNSNDVIYHSPIGVDQPQTIEIKAGSRVKVT 971
               +Y    P S+     GL I R   P + +     +    + +P ++E  AG    +
Sbjct: 1864 SEFNYRL--PGSQPGKLNGLRITRYIRPANQTEVARKYGLYDLKEPFSVE--AGQVFDIG 1919

Query: 972  LSIKVDHVSSFIVIKDRLPSGLEPL-----LSNSYYH---NGYYFNHVNNRENGVEIYSN 1127
            L +  DH  + ++I D LP+G E +      + +YY    + +  ++    ++ V  Y +
Sbjct: 1920 LEVITDHPVNHVLISDPLPAGFEAIDTDFQTATTYYQPQQDAWQLSYQKVYKDKVVAYGD 1979

Query: 1128 LLYPGVYNYSYQTIAITRGTFISPSAKIEEMYCPATFGRSSS 1253
             L  GVYN  Y   AIT G+F  P A++   Y   TFGRS+S
Sbjct: 1980 RLNAGVYNLHYLVRAITPGSFDYPGAEVSLQYNAETFGRSTS 2021

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,861,070,617
Number of extensions: 42731471
Number of successful extensions: 78986
Number of sequences better than 10.0: 59
Number of HSP's gapped: 78880
Number of HSP's successfully gapped: 64
Length of query: 447
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 315
Effective length of database: 623,955,076
Effective search space: 196545848940
Effective search space used: 196545848940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.58  gvh: 0.52  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U12357-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0