Contig-U12340-1 |
Contig ID |
Contig-U12340-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
801 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
2300408 |
End point |
2299617 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
3 |
Link to clone list |
U12340 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.30 |
Homology vs DNA |
Query= Contig-U12340-1 (Contig-U12340-1Q) /CSM_Contig/Contig-U12340-1Q.Seq.d (811 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ433191) Dictyostelium discoideum cDNA clone:ddv21e06, 3' ... 1283 0.0 1 (BJ332111) Dictyostelium discoideum cDNA clone:dda38c01, 5' ... 143 6e-50 2 (BJ414978) Dictyostelium discoideum cDNA clone:ddv21e06, 5' ... 143 9e-33 2 (CL937046) OA_ABa0047P12.f OA_ABa Oryza australiensis genomi... 52 0.033 1 (AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet... 52 0.033 1 (DQ927304) Tetrahymena paravorax strain RP mitochondrion, co... 32 0.090 7 (EJ120048) 1092343368518 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.13 1 (CR931727) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.21 7 (BX548160) Zebrafish DNA sequence from clone DKEY-25G11 in l... 38 0.21 7 (AM627657) Entamoeba dispar GSS, clone dispar23h11.p1k. 38 0.35 2 (CK763414) ltu01-3ms4-h10 Ltu01 Liriodendron tulipifera cDNA... 38 0.39 2 (AZ676694) ENTFV82TR Entamoeba histolytica Sheared DNA Entam... 38 0.41 2 (EG476157) AYBCQ90TF pooled cDNA populations Arabidopsis tha... 48 0.52 1 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.79 10 (CP000609) Methanococcus maripaludis C5, complete genome. 36 0.82 18 (AC224087) Bos taurus clone CH240-450H4, WORKING DRAFT SEQUE... 44 0.92 2 (CT573193) Zebrafish DNA sequence from clone DKEY-105D16 in ... 38 1.0 4 (AY047363) Dictyostelium discoideum cGMP-stimulated cGMP pho... 36 1.4 3 (AX345621) Sequence 692 from Patent WO0200928. 36 1.5 3 (AL662963) Oryza sativa genomic DNA, chromosome 4, BAC clone... 34 1.6 4 (CR381647) Zebrafish DNA sequence from clone CH211-248G18 in... 46 2.0 1 (CT025942) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1 (CT025865) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1 (AC203841) Zea mays chromosome 10 clone CH201-268K18; ZMMBBc... 46 2.0 1 (AC198506) Zea mays chromosome 10 clone CH201-212L3; ZMMBBc0... 46 2.0 1 (AC188738) Zea mays chromosome 8 clone CH201-216H20; ZMMBBc0... 46 2.0 1 (AC168866) Bos taurus clone CH240-222E7, WORKING DRAFT SEQUE... 46 2.0 1 (EJ768305) 1092963339143 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1 (EJ766711) 1092963287588 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1 (EJ291137) 1095383002451 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.0 1 (DE118296) Oryzias latipes DNA, reverse end of BAC clone: Md... 46 2.0 1 (CG846414) OG5AC71TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 2.0 1 (CG846401) OG5AC71TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 2.0 1 (CC171291) ii71b06.b1 WGS-ZmaysF (DH5a methyl filtered) Zea ... 46 2.0 1 (BZ824877) PUFFF25TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 2.0 1 (BH733124) BOMMK19TR BO_2_3_KB Brassica oleracea genomic clo... 46 2.0 1 (X51317) Red alga Gracilaria chilensis plasmid GC2 DNA seque... 40 2.5 3 (BX511229) Zebrafish DNA sequence from clone CH211-194H2 in ... 38 2.7 5 (AP007663) Lotus japonicus genomic DNA, chromosome 1, clone:... 32 2.8 8 (AC215389) Solanum lycopersicum chromosome 2 clone C02HBa012... 40 2.9 5 (AC185615) Zea mays chromosome 1 clone ZMMBBb-126J4; ZMMBBb0... 40 3.0 4 (AC173766) Bos taurus clone CH240-424H15, WORKING DRAFT SEQU... 34 3.0 7 (AM437780) Vitis vinifera contig VV78X043497.20, whole genom... 42 3.2 2 (AC121216) Rattus norvegicus 4 CH230-220A21 (Children's Hosp... 40 3.3 5 (AM482937) Vitis vinifera contig VV78X054571.11, whole genom... 42 3.3 2 (AC210804) Zea mays chromosome 4 clone CH201-7F15; ZMMBBc000... 40 3.4 5 (AC224131) Bos taurus clone CH240-449A12, WORKING DRAFT SEQU... 40 3.7 2 (AC179332) Strongylocentrotus purpuratus clone R3-57J23, WOR... 34 3.7 5 (AC215236) Zea mays chromosome 5 clone CH201-31K16; ZMMBBc00... 36 3.9 8 (AC139433) Homo sapiens chromosome 11 clone RP11-382M4 map 1... 36 4.1 8 (AC216689) Populus trichocarpa clone POP101-J02, complete se... 38 4.3 4 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 4.5 19 (FF794070) XABT88786.fwd Gateway compatible cien cDNA librar... 32 5.3 3 (ES496925) BIG_AF_4741 Brine Shrimp Adult (20 days after hat... 32 5.4 2 (CN626345) tae97f06.x1 Hydra EST Darmstadt I Hydra magnipapi... 34 5.4 3 (AM643243) Entamoeba dispar GSS, clone dispar112e03.p1k. 38 5.5 2 (EJ212104) 1092347028164 Global-Ocean-Sampling_GS-27-01-01-1... 36 5.6 2 (AF307158) Homo sapiens chromosome 8 clone RP11-117P17 map 8... 36 5.6 6 (AM485046) Vitis vinifera contig VV78X048945.2, whole genome... 38 6.1 2 (AC189399) Brassica rapa subsp. pekinensis clone KBrB056I08,... 36 6.3 7 (AC128816) Rattus norvegicus clone CH230-44N9, *** SEQUENCIN... 40 6.5 7 (EJ195879) 1092344237116 Global-Ocean-Sampling_GS-27-01-01-1... 36 6.5 2 (AC133755) Rattus norvegicus clone CH230-7A6, *** SEQUENCING... 40 6.7 7 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 7.4 11 (AC006788) Caenorhabditis elegans clone Y49C4, *** SEQUENCIN... 36 7.6 5 (AF030694) Plasmodium falciparum strain Dd2 heat shock prote... 36 7.6 4 (AC191094) Zea mays chromosome 5 clone CH201-325C16; ZMMBBc0... 44 7.7 4 (AL353912) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 36 7.8 5 (AX346908) Sequence 1979 from Patent WO0200928. 30 8.0 4 (CR855313) Zebrafish DNA sequence from clone CH211-198C17 in... 44 8.1 1 (AC145790) Xenopus tropicalis clone CH216-12L5, complete seq... 44 8.1 1 (EF038962) Synthetic construct Bacillus anthracis clone FLH2... 44 8.1 1 (AM436207) Vitis vinifera contig VV78X051815.4, whole genome... 44 8.1 1 (EU432549) Philodina roseola 7 transmembrane receptor (rhodo... 44 8.1 1 (EU432546) Philodina roseola 7 transmembrane receptor (rhodo... 44 8.1 1 (DQ445481) Nosema bombycis contig 1, partial genomic sequence. 44 8.1 1 (AC002067) Homo sapiens BAC clone CTB-126M9 from 7, complete... 44 8.1 1 (AC138061) Homo sapiens chromosome 11 clone CTD-2547E20 map ... 44 8.1 1 (AC115258) Rattus norvegicus clone CH230-367A2, *** SEQUENCI... 44 8.1 1 (AC109017) Rattus norvegicus clone CH230-174G17, *** SEQUENC... 44 8.1 1 (AC106587) Rattus norvegicus clone CH230-206F12, *** SEQUENC... 44 8.1 1 (CU861961) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.1 1 (AC200961) Strongylocentrotus purpuratus clone R3-1111M2, WO... 44 8.1 1 (AC180526) Strongylocentrotus purpuratus clone R3-3099F22, W... 44 8.1 1 (AC171301) Bos taurus clone CH240-257A23, WORKING DRAFT SEQU... 44 8.1 1 (EJ072675) 1095458096590 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.1 1 (EI510629) MUGQ_CH252P229A10T7_CN395_047 CHORI-252 Vervet Mo... 44 8.1 1 (DX847035) ZMMBLe0018K17.r ZMMBLe Zea mays genomic clone ZMM... 44 8.1 1 (DH336389) Oryzias latipes Fosmid clone:GOLWFno704_a10, forw... 44 8.1 1 (DE567669) Bombyx mori genomic DNA, Fosmid clone:GBMFno211_i... 44 8.1 1 (CE841000) tigr-gss-dog-17000332652600 Dog Library Canis lup... 44 8.1 1 (EC916979) G12_ADRIANA_P15_ENTOMOLOGIA_031204_R01_CMR_3.12_E... 44 8.1 1 (EC916159) F02_ADRIANA_P11_ENTOMOLOGIA_301104_R01_CMR_3.12_E... 44 8.1 1 (EC915880) A12_ADRIANA_P3_ENTOMOLOGIA_231104_R01_CMR_3.12_EV... 44 8.1 1 (CP000001) Bacillus cereus E33L, complete genome. 44 8.1 1 (AE017355) Bacillus thuringiensis serovar konkukian str. 97-... 44 8.1 1 (AE017334) Bacillus anthracis str. 'Ames Ancestor', complete... 44 8.1 1 (AE017225) Bacillus anthracis str. Sterne, complete genome. 44 8.1 1 (AE017194) Bacillus cereus ATCC 10987, complete genome. 44 8.1 1 (AE016879) Bacillus anthracis str. Ames, complete genome. 44 8.1 1
>(BJ433191) Dictyostelium discoideum cDNA clone:ddv21e06, 3' end, single read. Length = 658
Score = 1283 bits (647), Expect = 0.0 Identities = 656/656 (100%) Strand = Plus / Minus
Query: 155 aattatatgtcccaccaacaaccgccgtttcaaaaccatcaaaatatatttatcctttct 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 658 aattatatgtcccaccaacaaccgccgtttcaaaaccatcaaaatatatttatcctttct 599
Query: 215 ttccaaatataataccaaatacatttacattcttaatgactgtattcaaatattgtttat 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 598 ttccaaatataataccaaatacatttacattcttaatgactgtattcaaatattgtttat 539
Query: 275 cattaaccaccggtacaaacaaaacctcagcaccaccaactaataaagatcaagaaaatc 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 cattaaccaccggtacaaacaaaacctcagcaccaccaactaataaagatcaagaaaatc 479
Query: 335 aagaccaaacacctctttctgctgataaaatgaattctcaaaactctgtgttattaatcg 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 aagaccaaacacctctttctgctgataaaatgaattctcaaaactctgtgttattaatcg 419
Query: 395 gtagtattccaaactctgttagaaagattaaattatcccatggttttagtcatgatttac 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 gtagtattccaaactctgttagaaagattaaattatcccatggttttagtcatgatttac 359
Query: 455 caattggtattattcctcatagtgttgaggatttagatcttttcgaaaaatagaaattgg 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 caattggtattattcctcatagtgttgaggatttagatcttttcgaaaaatagaaattgg 299
Query: 515 cacatttccaaattcaatcaaagattttagattttcaaataaatatagtttaccattacc 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 cacatttccaaattcaatcaaagattttagattttcaaataaatatagtttaccattacc 239
Query: 575 aaaggtatgattccagaaggtgttgaaaaacttgaactttcagataaaaatataaatatt 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 aaaggtatgattccagaaggtgttgaaaaacttgaactttcagataaaaatataaatatt 179
Query: 635 ccattatcaatcccaagtacagtcaaagaattaacactatcacatggatttaatcatcca 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 ccattatcaatcccaagtacagtcaaagaattaacactatcacatggatttaatcatcca 119
Query: 695 tnagttaaagaaattattccatgtggagttnaaaaaatgagtatatatagtattggggaa 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118 tnagttaaagaaattattccatgtggagttnaaaaaatgagtatatatagtattggggaa 59
Query: 755 tgtgcattacttnaagaatcagtgccagatagtgtcaaatatgcctttttaggatt 810 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58 tgtgcattacttnaagaatcagtgccagatagtgtcaaatatgcctttttaggatt 3
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,223,513,392 Number of extensions: 80557726 Number of successful extensions: 5841768 Number of sequences better than 10.0: 107 Length of query: 811 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 787 Effective length of database: 97,308,875,965 Effective search space: 76582085384455 Effective search space used: 76582085384455 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 2 |
Homology vs Protein |
Query= Contig-U12340-1 (Contig-U12340-1Q) /CSM_Contig/Contig-U12340-1Q.Seq.d (811 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
(Q94481) RecName: Full=FNIP repeat-containing protein cigB; 53 4e-11 U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m... 53 4e-11 AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom... 54 8e-11 AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso... 52 1e-10 AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom... 52 4e-10 (Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906... 42 2e-08 (Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906... 45 1e-06 (Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing... 43 2e-05 AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom... 44 3e-05 AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom... 45 2e-04 AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso... 37 5e-04 AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso... 45 0.003 AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso... 41 0.006 AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso... 35 0.008 (Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719... 34 0.022 AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos... 35 0.029 AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso... 40 0.069 AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom... 39 0.15 (Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L... 39 0.26 AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso... 36 1.7 (Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740... 35 2.2 AB174184_1(AB174184|pid:none) Macaca fascicularis brain cDNA clo... 35 2.9 AB246665_1(AB246665|pid:none) Glycine max SBZ1 mRNA for bZIP pro... 35 2.9 AC115599_48(AC115599|pid:none) Dictyostelium discoideum chromoso... 35 2.9 AC116984_74(AC116984|pid:none) Dictyostelium discoideum chromoso... 35 3.8 AC115604_7(AC115604|pid:none) Dictyostelium discoideum chromosom... 35 3.8 AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromoso... 30 4.9 AC023279_25(AC023279|pid:none) Genomic sequence for Arabidopsis ... 34 6.5 AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso... 34 6.5 AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom... 34 6.5 AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos... 27 7.3 AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos... 27 8.0
>(Q94481) RecName: Full=FNIP repeat-containing protein cigB; Length = 1060
Score = 51.6 bits (122), Expect(2) = 4e-11 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Frame = +2
Query: 569 ITKGMIPEGVEKLELSDKNINIPL-SIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745 +TKG+IPEGV++L + + + + SIP+TV + L GFN K IIP GV ++ I Sbjct: 832 LTKGIIPEGVKELYIGNLKQELIIDSIPNTVTTVRLCDGFNQKLTKGIIPEGVKELYIRD 891
Query: 746 IGECALLXESVPDSVKYAFL 805 I + L+ +S+P++V L Sbjct: 892 IKQ-ELIIDSIPNTVTTVIL 910
Score = 39.7 bits (91), Expect(2) = 4e-11 Identities = 18/37 (48%), Positives = 27/37 (72%) Frame = +1
Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDLDL 495 L+I SIPN+V +++L GF+ L GIIP SV++L + Sbjct: 767 LIIDSIPNTVTRVRLLDGFNQKLTKGIIPESVKELHI 803
Score = 50.1 bits (118), Expect(2) = 9e-10 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +2
Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745 +TKG+IPEGV+ L + D K I SIP+TV + L GFN K IIP V ++ I + Sbjct: 746 LTKGIIPEGVKVLYIGDIKQELIIDSIPNTVTRVRLLDGFNQKLTKGIIPESVKELHIGN 805
Query: 746 IGECALLXESVPDSV 790 I + L+ +S+P++V Sbjct: 806 IKQ-ELIIDSIPNTV 819
Score = 36.6 bits (83), Expect(2) = 9e-10 Identities = 18/37 (48%), Positives = 25/37 (67%) Frame = +1
Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDLDL 495 L+I SIPN+V + L +GF+ L GIIP V++L L Sbjct: 681 LIIDSIPNTVTTVGLWYGFNQKLTKGIIPEGVKELRL 717
Score = 47.8 bits (112), Expect(2) = 5e-09 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Frame = +2
Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745 +TKG+IPEGV++L + D K I SIP+TV + L GFN K IIP V + + Sbjct: 875 LTKGIIPEGVKELYIRDIKQELIIDSIPNTVTTVILCDGFNQKLTKGIIPEWVKGLCLGD 934
Query: 746 IGECALLXESVPDSV 790 I + L+ +S+P++V Sbjct: 935 IKQ-ELIIDSIPNTV 948
Score = 36.2 bits (82), Expect(2) = 5e-09 Identities = 18/35 (51%), Positives = 23/35 (65%) Frame = +1
Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489 L+I SIPN+V I L GF+ L GIIP V++L Sbjct: 810 LIIDSIPNTVTTITLCDGFNQKLTKGIIPEGVKEL 844
Score = 45.8 bits (107), Expect(2) = 1e-08 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Frame = +2
Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745 +TKG+IPE V+ L L D K I SIP+TV + L GFN K IIP V ++ I Sbjct: 918 LTKGIIPEWVKGLCLGDIKQELIIDSIPNTVTTVRLLDGFNQKLTKGIIPESVKELYIDD 977
Query: 746 IGECALLXESVPDSV 790 I + L+ +S+P++V Sbjct: 978 IKQ-ELIIDSIPNTV 991
Score = 37.0 bits (84), Expect(2) = 1e-08 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +1
Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489 L+I SIPN+V ++L GF+ L GIIP V++L Sbjct: 853 LIIDSIPNTVTTVRLCDGFNQKLTKGIIPEGVKEL 887
Score = 51.6 bits (122), Expect(2) = 3e-08 Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Frame = +2
Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745 +TKG+IPE V++L + + K I SIP+TV +TL GFN K IIP GV ++ I + Sbjct: 789 LTKGIIPESVKELHIGNIKQELIIDSIPNTVTTITLCDGFNQKLTKGIIPEGVKELYIGN 848
Query: 746 IGECALLXESVPDSV 790 + + L+ +S+P++V Sbjct: 849 LKQ-ELIIDSIPNTV 862
Score = 30.0 bits (66), Expect(2) = 3e-08 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +1
Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489 L+I SIP+++ + L GF+ L GIIP V+ L Sbjct: 724 LIIDSIPSTLTTVILCDGFNQKLTKGIIPEGVKVL 758
Score = 47.4 bits (111), Expect(2) = 6e-08 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Frame = +2
Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745 +TKG+IPE V++L + D K I SIP+TV + L GFN K IIP V ++ I Sbjct: 961 LTKGIIPESVKELYIDDIKQELIIDSIPNTVTTVRLLDGFNQKLTKGIIPEWVKELHIGD 1020
Query: 746 IGECALLXESVPDSVKYAFL 805 I + L+ +S+P+++ ++ Sbjct: 1021 IKQ-ELIIDSIPNTLNNVYI 1039
Score = 33.1 bits (74), Expect(2) = 6e-08 Identities = 18/37 (48%), Positives = 23/37 (62%) Frame = +1
Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDLDL 495 L+I SIPN+V + L GF+ L GIIP V+ L L Sbjct: 896 LIIDSIPNTVTTVILCDGFNQKLTKGIIPEWVKGLCL 932
Score = 53.1 bits (126), Expect(2) = 2e-06 Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +2
Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745 +TKG+IPEGV++L L D K I SIPST+ + L GFN K IIP GV + I Sbjct: 703 LTKGIIPEGVKELRLGDIKQELIIDSIPSTLTTVILCDGFNQKLTKGIIPEGVKVLYIGD 762
Query: 746 IGECALLXESVPDSV 790 I + L+ +S+P++V Sbjct: 763 IKQ-ELIIDSIPNTV 776
Score = 21.9 bits (45), Expect(2) = 2e-06 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1
Query: 376 NSVLLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489 N + + +PN+V L GF+ L GIIP V+ L Sbjct: 638 NILSKLKKLPNNVL---LLSGFNQKLTKGIIPEGVKVL 672
Score = 51.6 bits (122), Expect = 3e-05 Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Frame = +2
Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745 +TKG+IPEGV++L +S+ K I SIP+TV + L GFN K IIP GV + I + Sbjct: 225 LTKGIIPEGVKELYISNIKQELIIDSIPNTVTTVGLCDGFNQKLTKGIIPEGVKVLYIGN 284
Query: 746 IGECALLXESVPDSV 790 I + L+ +S+P++V Sbjct: 285 IKQ-VLIIDSIPNNV 298
Score = 50.8 bits (120), Expect = 5e-05 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 1/97 (1%) Frame = +2
Query: 518 ISKFNQRF*IFK*I*FTITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHP 694 +S FNQ+ +TKG+IPEGV+ L + D K I SIP+TV + L +GFN Sbjct: 653 LSGFNQK----------LTKGIIPEGVKVLYIGDIKQELIIDSIPNTVTTVGLWYGFNQK 702
Query: 695 XVKEIIPCGVXKMSIYSIGECALLXESVPDSVKYAFL 805 K IIP GV ++ + I + L+ +S+P ++ L Sbjct: 703 LTKGIIPEGVKELRLGDIKQ-ELIIDSIPSTLTTVIL 738
Score = 35.0 bits (79), Expect(2) = 0.004 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = +2
Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVK 703 +TKG+IPEGV+ L + + K + I SIP+ V + L GFN K Sbjct: 268 LTKGIIPEGVKVLYIGNIKQVLIIDSIPNNVTTVGLCDGFNQKLTK 313
Score = 28.9 bits (63), Expect(2) = 0.004 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Frame = +1
Query: 328 ENQDQTPLSAD--KMNSQNSVLLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489 EN + + LS D + +++ ++ + K+ L +GF+ L GIIP V++L Sbjct: 182 ENDESSILSGDFESLAFKDNCNILSKLTKLPNKVLLLNGFNQKLTKGIIPEGVKEL 237
Score = 38.1 bits (87), Expect = 0.34 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = +1
Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489 L+I SIPN+V ++L GF+ L GIIP SV++L Sbjct: 939 LIIDSIPNTVTTVRLLDGFNQKLTKGIIPESVKEL 973
Score = 37.7 bits (86), Expect = 0.45 Identities = 28/90 (31%), Positives = 40/90 (44%) Frame = +1
Query: 226 IPNTFTFLMTVFKYCLSLTTGTNKTSAPPTNKDQENQDQTPLSADKMNSQNSVLLIGSIP 405 IPNT T + + + LT G S D Q+ L+I SIP Sbjct: 944 IPNTVTTVRLLDGFNQKLTKGIIPESVKELYIDDIKQE---------------LIIDSIP 988
Query: 406 NSVRKIKLSHGFSHDLPIGIIPHSVEDLDL 495 N+V ++L GF+ L GIIP V++L + Sbjct: 989 NTVTTVRLLDGFNQKLTKGIIPEWVKELHI 1018
Score = 34.7 bits (78), Expect = 3.8 Identities = 29/98 (29%), Positives = 43/98 (43%) Frame = +2
Query: 497 SKNRNWHISKFNQRF*IFK*I*FTITKGMIPEGVEKLELSDKNINIPLSIPSTVKELTLS 676 S N+N I N F I+ + + + E L D N NI + + L Sbjct: 598 SNNKNEFIKILNHNFYIYS---ESDESSFLTDDFESLAFKD-NCNILSKLKKLPNNVLLL 653
Query: 677 HGFNHPXVKEIIPCGVXKMSIYSIGECALLXESVPDSV 790 GFN K IIP GV + I I + L+ +S+P++V Sbjct: 654 SGFNQKLTKGIIPEGVKVLYIGDIKQ-ELIIDSIPNTV 690
Score = 33.5 bits (75), Expect = 8.5 Identities = 22/64 (34%), Positives = 35/64 (54%) Frame = +2
Query: 599 EKLELSDKNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYSIGECALLXESV 778 E L D N NI + ++ L +GFN K IIP GV ++ I +I + L+ +S+ Sbjct: 194 ESLAFKD-NCNILSKLTKLPNKVLLLNGFNQKLTKGIIPEGVKELYISNIKQ-ELIIDSI 251
Query: 779 PDSV 790 P++V Sbjct: 252 PNTV 255
Score = 33.5 bits (75), Expect = 8.5 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +1
Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489 L+I SIPN+V + L GF+ L GIIP V+ L Sbjct: 246 LIIDSIPNTVTTVGLCDGFNQKLTKGIIPEGVKVL 280
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 1,246,444,607 Number of extensions: 25537207 Number of successful extensions: 44514 Number of sequences better than 10.0: 32 Number of HSP's gapped: 44451 Number of HSP's successfully gapped: 172 Length of query: 270 Length of database: 1,051,180,864 Length adjustment: 126 Effective length of query: 144 Effective length of database: 643,374,430 Effective search space: 92645917920 Effective search space used: 92645917920 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |