Contig-U12340-1
Contig ID Contig-U12340-1
Contig update 2002.12.18
Contig sequence
>Contig-U12340-1 (Contig-U12340-1Q) /CSM_Contig/Contig-U12340-1Q.Seq.d
AAGTTAGAACCTATGCAATTATTGATTATATGGTACAATAAATAATTATT
ATTATTATTATTTGATGTGGGGAATAACAGATTTTGATAACACCAAAATT
AATTTTTTGCATTTCAACTTTGCTAAAAAAAAAA----------NNNNNN
NNNNAATTATATGTCCCACCAACAACCGCCGTTTCAAAACCATCAAAATA
TATTTATCCTTTCTTTCCAAATATAATACCAAATACATTTACATTCTTAA
TGACTGTATTCAAATATTGTTTATCATTAACCACCGGTACAAACAAAACC
TCAGCACCACCAACTAATAAAGATCAAGAAAATCAAGACCAAACACCTCT
TTCTGCTGATAAAATGAATTCTCAAAACTCTGTGTTATTAATCGGTAGTA
TTCCAAACTCTGTTAGAAAGATTAAATTATCCCATGGTTTTAGTCATGAT
TTACCAATTGGTATTATTCCTCATAGTGTTGAGGATTTAGATCTTTTCGA
AAAATAGAAATTGGCACATTTCCAAATTCAATCAAAGATTTTAGATTTTC
AAATAAATATAGTTTACCATTACCAAAGGTATGATTCCAGAAGGTGTTGA
AAAACTTGAACTTTCAGATAAAAATATAAATATTCCATTATCAATCCCAA
GTACAGTCAAAGAATTAACACTATCACATGGATTTAATCATCCATNAGTT
AAAGAAATTATTCCATGTGGAGTTNAAAAAATGAGTATATATAGTATTGG
GGAATGTGCATTACTTNAAGAATCAGTGCCAGATAGTGTCAAATATGCCT
TTTTAGGATTN

Gap gap included
Contig length 801
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2300408
End point 2299617
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U12340
List of clone(s)

est1=AHD502F,1,134
est2=VFK219F,30,134
est3=VFK219Z,135,792
Translated Amino Acid sequence
s*nlcny*LYGTINNYYYYYLMWGITDFDNTKINFLHFNFAKKK---

---XXXXLYVPPTTAVSKPSKYIYPFFPNIIPNTFTFLMTVFKYCLSLTTGTNKTSAPPT
NKDQENQDQTPLSADKMNSQNSVLLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDLDL
FEK*klahfqiqskildfqinivyhyqrydsrrc*kt*tfr*kykysiinpkysqrinti
twi*ssxs*rnysmwsxkneyi*ywgmcitxrisar*cqiclfri


Translated Amino Acid sequence (All Frames)
Frame A:
klepmqlliiwynk*lllllfdvgnnrf**hqn*ffafqlc*kk---

---XXXXLYVPPTTAVSKPSKYIYPFFPNIIPNTFTFLMTVFKYCLSLTTGTNKTSAPPT
NKDQENQDQTPLSADKMNSQNSVLLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDLDL
FEK*klahfqiqskildfqinivyhyqrydsrrc*kt*tfr*kykysiinpkysqrinti
twi*ssxs*rnysmwsxkneyi*ywgmcitxrisar*cqiclfri

Frame B:
s*nlcny*LYGTINNYYYYYLMWGITDFDNTKINFLHFNFAKKK---

---xxxnymshqqppfqnhqnifilsfqi*yqihlhs**lysnivyh*ppvqtkpqhhql
ikikkiktkhlfllik*ilktlcy*svvfqtllerlnypmvlvmiyqlvlflivlri*if
sknrnwhiskfnqrf*ifk*i*ftitkgmipegveklelsdkniniplsipstvkeltls
hgfnhpxvkeiipcgvxkmsiysigecallxesvpdsvkyaflgx

Frame C:
vrtyaiidymvq*iiiiiii*cge*qilitpklifcistllkkk---

---xxxiicptnnrrfktikiylsflskyntkyiyilndciqilfiinhrykqnlsttn*
*rsrksrpntsfc**nefsklcvinr*ysklc*kd*iipwf*s*ftnwyyss*c*gfrsf
rkieigtfpnsikdfrfsnkyslplpkv*fqkvlknlnfqiki*ifhyqsqvqskn*hyh
mdliihxlkklfhvexkk*vyivlgnvhyxknqcqivsnmpf*d

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12340-1 (Contig-U12340-1Q)
/CSM_Contig/Contig-U12340-1Q.Seq.d
(811 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12340-1 (Contig-U12340-1Q) /CSM_Contig/Conti... 1247 0.0
Contig-U09494-1 (Contig-U09494-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U11711-1 (Contig-U11711-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U12559-1 (Contig-U12559-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U09364-1 (Contig-U09364-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U13992-1 (Contig-U13992-1Q) /CSM_Contig/Conti... 36 0.057
Contig-U12056-1 (Contig-U12056-1Q) /CSM_Contig/Conti... 36 0.057
Contig-U14112-1 (Contig-U14112-1Q) /CSM_Contig/Conti... 34 0.23
Contig-U12487-1 (Contig-U12487-1Q) /CSM_Contig/Conti... 34 0.23
Contig-U10832-1 (Contig-U10832-1Q) /CSM_Contig/Conti... 34 0.23

>Contig-U12340-1 (Contig-U12340-1Q) /CSM_Contig/Contig-U12340-1Q.Seq.d
Length = 811

Score = 1247 bits (629), Expect = 0.0
Identities = 650/656 (99%)
Strand = Plus / Plus


Query: 155 aattatatgtcccaccaacaaccgccgtttcaaaaccatcaaaatatatttatcctttct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aattatatgtcccaccaacaaccgccgtttcaaaaccatcaaaatatatttatcctttct 214


Query: 215 ttccaaatataataccaaatacatttacattcttaatgactgtattcaaatattgtttat 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttccaaatataataccaaatacatttacattcttaatgactgtattcaaatattgtttat 274


Query: 275 cattaaccaccggtacaaacaaaacctcagcaccaccaactaataaagatcaagaaaatc 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cattaaccaccggtacaaacaaaacctcagcaccaccaactaataaagatcaagaaaatc 334


Query: 335 aagaccaaacacctctttctgctgataaaatgaattctcaaaactctgtgttattaatcg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aagaccaaacacctctttctgctgataaaatgaattctcaaaactctgtgttattaatcg 394


Query: 395 gtagtattccaaactctgttagaaagattaaattatcccatggttttagtcatgatttac 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtagtattccaaactctgttagaaagattaaattatcccatggttttagtcatgatttac 454


Query: 455 caattggtattattcctcatagtgttgaggatttagatcttttcgaaaaatagaaattgg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caattggtattattcctcatagtgttgaggatttagatcttttcgaaaaatagaaattgg 514


Query: 515 cacatttccaaattcaatcaaagattttagattttcaaataaatatagtttaccattacc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cacatttccaaattcaatcaaagattttagattttcaaataaatatagtttaccattacc 574


Query: 575 aaaggtatgattccagaaggtgttgaaaaacttgaactttcagataaaaatataaatatt 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaaggtatgattccagaaggtgttgaaaaacttgaactttcagataaaaatataaatatt 634


Query: 635 ccattatcaatcccaagtacagtcaaagaattaacactatcacatggatttaatcatcca 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ccattatcaatcccaagtacagtcaaagaattaacactatcacatggatttaatcatcca 694


Query: 695 tnagttaaagaaattattccatgtggagttnnnnnnntgagtatatatagtattggggaa 754
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 695 tnagttaaagaaattattccatgtggagttnaaaaaatgagtatatatagtattggggaa 754


Query: 755 tgtgcattacttnaagaatcagtgccagatagtgtcaaatatgcctttttaggatt 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgtgcattacttnaagaatcagtgccagatagtgtcaaatatgcctttttaggatt 810


Score = 123 bits (62), Expect = 3e-28
Identities = 62/62 (100%)
Strand = Plus / Plus


Query: 63 tgatgtggggaataacagattttgataacaccaaaattaattttttgcatttcaactttg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tgatgtggggaataacagattttgataacaccaaaattaattttttgcatttcaactttg 122


Query: 123 ct 124
||
Sbjct: 123 ct 124


Score = 87.7 bits (44), Expect = 2e-17
Identities = 44/44 (100%)
Strand = Plus / Plus


Query: 1 aagttagaacctatgcaattattgattatatggtacaataaata 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagttagaacctatgcaattattgattatatggtacaataaata 44


>Contig-U09494-1 (Contig-U09494-1Q) /CSM_Contig/Contig-U09494-1Q.Seq.d
Length = 903

Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 394 ggtagtattccaaactctgtta 415
||||||||||||||||||||||
Sbjct: 434 ggtagtattccaaactctgtta 455


>Contig-U11711-1 (Contig-U11711-1Q) /CSM_Contig/Contig-U11711-1Q.Seq.d
Length = 2138

Score = 40.1 bits (20), Expect = 0.004
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 578 ggtatgattccagaaggtgttgaa 601
||||| ||||||||||||||||||
Sbjct: 1953 ggtattattccagaaggtgttgaa 1976


Score = 36.2 bits (18), Expect = 0.057
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 585 ttccagaaggtgttgaaa 602
||||||||||||||||||
Sbjct: 1315 ttccagaaggtgttgaaa 1332


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,774
Number of Sequences: 6905
Number of extensions: 11774
Number of successful extensions: 1305
Number of sequences better than 10.0: 131
length of query: 811
length of database: 5,674,871
effective HSP length: 16
effective length of query: 795
effective length of database: 5,564,391
effective search space: 4423690845
effective search space used: 4423690845
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12340-1 (Contig-U12340-1Q) /CSM_Contig/Contig-U12340-1Q.Seq.d
(811 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433191) Dictyostelium discoideum cDNA clone:ddv21e06, 3' ... 1283 0.0 1
(BJ332111) Dictyostelium discoideum cDNA clone:dda38c01, 5' ... 143 6e-50 2
(BJ414978) Dictyostelium discoideum cDNA clone:ddv21e06, 5' ... 143 9e-33 2
(CL937046) OA_ABa0047P12.f OA_ABa Oryza australiensis genomi... 52 0.033 1
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet... 52 0.033 1
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co... 32 0.090 7
(EJ120048) 1092343368518 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.13 1
(CR931727) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.21 7
(BX548160) Zebrafish DNA sequence from clone DKEY-25G11 in l... 38 0.21 7
(AM627657) Entamoeba dispar GSS, clone dispar23h11.p1k. 38 0.35 2
(CK763414) ltu01-3ms4-h10 Ltu01 Liriodendron tulipifera cDNA... 38 0.39 2
(AZ676694) ENTFV82TR Entamoeba histolytica Sheared DNA Entam... 38 0.41 2
(EG476157) AYBCQ90TF pooled cDNA populations Arabidopsis tha... 48 0.52 1
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.79 10
(CP000609) Methanococcus maripaludis C5, complete genome. 36 0.82 18
(AC224087) Bos taurus clone CH240-450H4, WORKING DRAFT SEQUE... 44 0.92 2
(CT573193) Zebrafish DNA sequence from clone DKEY-105D16 in ... 38 1.0 4
(AY047363) Dictyostelium discoideum cGMP-stimulated cGMP pho... 36 1.4 3
(AX345621) Sequence 692 from Patent WO0200928. 36 1.5 3
(AL662963) Oryza sativa genomic DNA, chromosome 4, BAC clone... 34 1.6 4
(CR381647) Zebrafish DNA sequence from clone CH211-248G18 in... 46 2.0 1
(CT025942) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1
(CT025865) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1
(AC203841) Zea mays chromosome 10 clone CH201-268K18; ZMMBBc... 46 2.0 1
(AC198506) Zea mays chromosome 10 clone CH201-212L3; ZMMBBc0... 46 2.0 1
(AC188738) Zea mays chromosome 8 clone CH201-216H20; ZMMBBc0... 46 2.0 1
(AC168866) Bos taurus clone CH240-222E7, WORKING DRAFT SEQUE... 46 2.0 1
(EJ768305) 1092963339143 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1
(EJ766711) 1092963287588 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1
(EJ291137) 1095383002451 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.0 1
(DE118296) Oryzias latipes DNA, reverse end of BAC clone: Md... 46 2.0 1
(CG846414) OG5AC71TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 2.0 1
(CG846401) OG5AC71TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 2.0 1
(CC171291) ii71b06.b1 WGS-ZmaysF (DH5a methyl filtered) Zea ... 46 2.0 1
(BZ824877) PUFFF25TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 2.0 1
(BH733124) BOMMK19TR BO_2_3_KB Brassica oleracea genomic clo... 46 2.0 1
(X51317) Red alga Gracilaria chilensis plasmid GC2 DNA seque... 40 2.5 3
(BX511229) Zebrafish DNA sequence from clone CH211-194H2 in ... 38 2.7 5
(AP007663) Lotus japonicus genomic DNA, chromosome 1, clone:... 32 2.8 8
(AC215389) Solanum lycopersicum chromosome 2 clone C02HBa012... 40 2.9 5
(AC185615) Zea mays chromosome 1 clone ZMMBBb-126J4; ZMMBBb0... 40 3.0 4
(AC173766) Bos taurus clone CH240-424H15, WORKING DRAFT SEQU... 34 3.0 7
(AM437780) Vitis vinifera contig VV78X043497.20, whole genom... 42 3.2 2
(AC121216) Rattus norvegicus 4 CH230-220A21 (Children's Hosp... 40 3.3 5
(AM482937) Vitis vinifera contig VV78X054571.11, whole genom... 42 3.3 2
(AC210804) Zea mays chromosome 4 clone CH201-7F15; ZMMBBc000... 40 3.4 5
(AC224131) Bos taurus clone CH240-449A12, WORKING DRAFT SEQU... 40 3.7 2
(AC179332) Strongylocentrotus purpuratus clone R3-57J23, WOR... 34 3.7 5
(AC215236) Zea mays chromosome 5 clone CH201-31K16; ZMMBBc00... 36 3.9 8
(AC139433) Homo sapiens chromosome 11 clone RP11-382M4 map 1... 36 4.1 8
(AC216689) Populus trichocarpa clone POP101-J02, complete se... 38 4.3 4
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 4.5 19
(FF794070) XABT88786.fwd Gateway compatible cien cDNA librar... 32 5.3 3
(ES496925) BIG_AF_4741 Brine Shrimp Adult (20 days after hat... 32 5.4 2
(CN626345) tae97f06.x1 Hydra EST Darmstadt I Hydra magnipapi... 34 5.4 3
(AM643243) Entamoeba dispar GSS, clone dispar112e03.p1k. 38 5.5 2
(EJ212104) 1092347028164 Global-Ocean-Sampling_GS-27-01-01-1... 36 5.6 2
(AF307158) Homo sapiens chromosome 8 clone RP11-117P17 map 8... 36 5.6 6
(AM485046) Vitis vinifera contig VV78X048945.2, whole genome... 38 6.1 2
(AC189399) Brassica rapa subsp. pekinensis clone KBrB056I08,... 36 6.3 7
(AC128816) Rattus norvegicus clone CH230-44N9, *** SEQUENCIN... 40 6.5 7
(EJ195879) 1092344237116 Global-Ocean-Sampling_GS-27-01-01-1... 36 6.5 2
(AC133755) Rattus norvegicus clone CH230-7A6, *** SEQUENCING... 40 6.7 7
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 7.4 11
(AC006788) Caenorhabditis elegans clone Y49C4, *** SEQUENCIN... 36 7.6 5
(AF030694) Plasmodium falciparum strain Dd2 heat shock prote... 36 7.6 4
(AC191094) Zea mays chromosome 5 clone CH201-325C16; ZMMBBc0... 44 7.7 4
(AL353912) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 36 7.8 5
(AX346908) Sequence 1979 from Patent WO0200928. 30 8.0 4
(CR855313) Zebrafish DNA sequence from clone CH211-198C17 in... 44 8.1 1
(AC145790) Xenopus tropicalis clone CH216-12L5, complete seq... 44 8.1 1
(EF038962) Synthetic construct Bacillus anthracis clone FLH2... 44 8.1 1
(AM436207) Vitis vinifera contig VV78X051815.4, whole genome... 44 8.1 1
(EU432549) Philodina roseola 7 transmembrane receptor (rhodo... 44 8.1 1
(EU432546) Philodina roseola 7 transmembrane receptor (rhodo... 44 8.1 1
(DQ445481) Nosema bombycis contig 1, partial genomic sequence. 44 8.1 1
(AC002067) Homo sapiens BAC clone CTB-126M9 from 7, complete... 44 8.1 1
(AC138061) Homo sapiens chromosome 11 clone CTD-2547E20 map ... 44 8.1 1
(AC115258) Rattus norvegicus clone CH230-367A2, *** SEQUENCI... 44 8.1 1
(AC109017) Rattus norvegicus clone CH230-174G17, *** SEQUENC... 44 8.1 1
(AC106587) Rattus norvegicus clone CH230-206F12, *** SEQUENC... 44 8.1 1
(CU861961) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.1 1
(AC200961) Strongylocentrotus purpuratus clone R3-1111M2, WO... 44 8.1 1
(AC180526) Strongylocentrotus purpuratus clone R3-3099F22, W... 44 8.1 1
(AC171301) Bos taurus clone CH240-257A23, WORKING DRAFT SEQU... 44 8.1 1
(EJ072675) 1095458096590 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.1 1
(EI510629) MUGQ_CH252P229A10T7_CN395_047 CHORI-252 Vervet Mo... 44 8.1 1
(DX847035) ZMMBLe0018K17.r ZMMBLe Zea mays genomic clone ZMM... 44 8.1 1
(DH336389) Oryzias latipes Fosmid clone:GOLWFno704_a10, forw... 44 8.1 1
(DE567669) Bombyx mori genomic DNA, Fosmid clone:GBMFno211_i... 44 8.1 1
(CE841000) tigr-gss-dog-17000332652600 Dog Library Canis lup... 44 8.1 1
(EC916979) G12_ADRIANA_P15_ENTOMOLOGIA_031204_R01_CMR_3.12_E... 44 8.1 1
(EC916159) F02_ADRIANA_P11_ENTOMOLOGIA_301104_R01_CMR_3.12_E... 44 8.1 1
(EC915880) A12_ADRIANA_P3_ENTOMOLOGIA_231104_R01_CMR_3.12_EV... 44 8.1 1
(CP000001) Bacillus cereus E33L, complete genome. 44 8.1 1
(AE017355) Bacillus thuringiensis serovar konkukian str. 97-... 44 8.1 1
(AE017334) Bacillus anthracis str. 'Ames Ancestor', complete... 44 8.1 1
(AE017225) Bacillus anthracis str. Sterne, complete genome. 44 8.1 1
(AE017194) Bacillus cereus ATCC 10987, complete genome. 44 8.1 1
(AE016879) Bacillus anthracis str. Ames, complete genome. 44 8.1 1

>(BJ433191) Dictyostelium discoideum cDNA clone:ddv21e06, 3' end,
single read.
Length = 658

Score = 1283 bits (647), Expect = 0.0
Identities = 656/656 (100%)
Strand = Plus / Minus


Query: 155 aattatatgtcccaccaacaaccgccgtttcaaaaccatcaaaatatatttatcctttct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aattatatgtcccaccaacaaccgccgtttcaaaaccatcaaaatatatttatcctttct 599


Query: 215 ttccaaatataataccaaatacatttacattcttaatgactgtattcaaatattgtttat 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttccaaatataataccaaatacatttacattcttaatgactgtattcaaatattgtttat 539


Query: 275 cattaaccaccggtacaaacaaaacctcagcaccaccaactaataaagatcaagaaaatc 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cattaaccaccggtacaaacaaaacctcagcaccaccaactaataaagatcaagaaaatc 479


Query: 335 aagaccaaacacctctttctgctgataaaatgaattctcaaaactctgtgttattaatcg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aagaccaaacacctctttctgctgataaaatgaattctcaaaactctgtgttattaatcg 419


Query: 395 gtagtattccaaactctgttagaaagattaaattatcccatggttttagtcatgatttac 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtagtattccaaactctgttagaaagattaaattatcccatggttttagtcatgatttac 359


Query: 455 caattggtattattcctcatagtgttgaggatttagatcttttcgaaaaatagaaattgg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caattggtattattcctcatagtgttgaggatttagatcttttcgaaaaatagaaattgg 299


Query: 515 cacatttccaaattcaatcaaagattttagattttcaaataaatatagtttaccattacc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cacatttccaaattcaatcaaagattttagattttcaaataaatatagtttaccattacc 239


Query: 575 aaaggtatgattccagaaggtgttgaaaaacttgaactttcagataaaaatataaatatt 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aaaggtatgattccagaaggtgttgaaaaacttgaactttcagataaaaatataaatatt 179


Query: 635 ccattatcaatcccaagtacagtcaaagaattaacactatcacatggatttaatcatcca 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ccattatcaatcccaagtacagtcaaagaattaacactatcacatggatttaatcatcca 119


Query: 695 tnagttaaagaaattattccatgtggagttnaaaaaatgagtatatatagtattggggaa 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tnagttaaagaaattattccatgtggagttnaaaaaatgagtatatatagtattggggaa 59


Query: 755 tgtgcattacttnaagaatcagtgccagatagtgtcaaatatgcctttttaggatt 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tgtgcattacttnaagaatcagtgccagatagtgtcaaatatgcctttttaggatt 3

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,223,513,392
Number of extensions: 80557726
Number of successful extensions: 5841768
Number of sequences better than 10.0: 107
Length of query: 811
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 787
Effective length of database: 97,308,875,965
Effective search space: 76582085384455
Effective search space used: 76582085384455
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12340-1 (Contig-U12340-1Q) /CSM_Contig/Contig-U12340-1Q.Seq.d
(811 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q94481) RecName: Full=FNIP repeat-containing protein cigB; 53 4e-11
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m... 53 4e-11
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom... 54 8e-11
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso... 52 1e-10
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom... 52 4e-10
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906... 42 2e-08
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906... 45 1e-06
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing... 43 2e-05
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom... 44 3e-05
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom... 45 2e-04
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso... 37 5e-04
AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso... 45 0.003
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso... 41 0.006
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso... 35 0.008
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719... 34 0.022
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos... 35 0.029
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso... 40 0.069
AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom... 39 0.15
(Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L... 39 0.26
AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso... 36 1.7
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740... 35 2.2
AB174184_1(AB174184|pid:none) Macaca fascicularis brain cDNA clo... 35 2.9
AB246665_1(AB246665|pid:none) Glycine max SBZ1 mRNA for bZIP pro... 35 2.9
AC115599_48(AC115599|pid:none) Dictyostelium discoideum chromoso... 35 2.9
AC116984_74(AC116984|pid:none) Dictyostelium discoideum chromoso... 35 3.8
AC115604_7(AC115604|pid:none) Dictyostelium discoideum chromosom... 35 3.8
AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromoso... 30 4.9
AC023279_25(AC023279|pid:none) Genomic sequence for Arabidopsis ... 34 6.5
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso... 34 6.5
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom... 34 6.5
AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos... 27 7.3
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos... 27 8.0

>(Q94481) RecName: Full=FNIP repeat-containing protein cigB;
Length = 1060

Score = 51.6 bits (122), Expect(2) = 4e-11
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +2

Query: 569 ITKGMIPEGVEKLELSDKNINIPL-SIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745
+TKG+IPEGV++L + + + + SIP+TV + L GFN K IIP GV ++ I
Sbjct: 832 LTKGIIPEGVKELYIGNLKQELIIDSIPNTVTTVRLCDGFNQKLTKGIIPEGVKELYIRD 891

Query: 746 IGECALLXESVPDSVKYAFL 805
I + L+ +S+P++V L
Sbjct: 892 IKQ-ELIIDSIPNTVTTVIL 910

Score = 39.7 bits (91), Expect(2) = 4e-11
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1

Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDLDL 495
L+I SIPN+V +++L GF+ L GIIP SV++L +
Sbjct: 767 LIIDSIPNTVTRVRLLDGFNQKLTKGIIPESVKELHI 803

Score = 50.1 bits (118), Expect(2) = 9e-10
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +2

Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745
+TKG+IPEGV+ L + D K I SIP+TV + L GFN K IIP V ++ I +
Sbjct: 746 LTKGIIPEGVKVLYIGDIKQELIIDSIPNTVTRVRLLDGFNQKLTKGIIPESVKELHIGN 805

Query: 746 IGECALLXESVPDSV 790
I + L+ +S+P++V
Sbjct: 806 IKQ-ELIIDSIPNTV 819

Score = 36.6 bits (83), Expect(2) = 9e-10
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1

Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDLDL 495
L+I SIPN+V + L +GF+ L GIIP V++L L
Sbjct: 681 LIIDSIPNTVTTVGLWYGFNQKLTKGIIPEGVKELRL 717

Score = 47.8 bits (112), Expect(2) = 5e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +2

Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745
+TKG+IPEGV++L + D K I SIP+TV + L GFN K IIP V + +
Sbjct: 875 LTKGIIPEGVKELYIRDIKQELIIDSIPNTVTTVILCDGFNQKLTKGIIPEWVKGLCLGD 934

Query: 746 IGECALLXESVPDSV 790
I + L+ +S+P++V
Sbjct: 935 IKQ-ELIIDSIPNTV 948

Score = 36.2 bits (82), Expect(2) = 5e-09
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1

Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489
L+I SIPN+V I L GF+ L GIIP V++L
Sbjct: 810 LIIDSIPNTVTTITLCDGFNQKLTKGIIPEGVKEL 844

Score = 45.8 bits (107), Expect(2) = 1e-08
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +2

Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745
+TKG+IPE V+ L L D K I SIP+TV + L GFN K IIP V ++ I
Sbjct: 918 LTKGIIPEWVKGLCLGDIKQELIIDSIPNTVTTVRLLDGFNQKLTKGIIPESVKELYIDD 977

Query: 746 IGECALLXESVPDSV 790
I + L+ +S+P++V
Sbjct: 978 IKQ-ELIIDSIPNTV 991

Score = 37.0 bits (84), Expect(2) = 1e-08
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1

Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489
L+I SIPN+V ++L GF+ L GIIP V++L
Sbjct: 853 LIIDSIPNTVTTVRLCDGFNQKLTKGIIPEGVKEL 887

Score = 51.6 bits (122), Expect(2) = 3e-08
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = +2

Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745
+TKG+IPE V++L + + K I SIP+TV +TL GFN K IIP GV ++ I +
Sbjct: 789 LTKGIIPESVKELHIGNIKQELIIDSIPNTVTTITLCDGFNQKLTKGIIPEGVKELYIGN 848

Query: 746 IGECALLXESVPDSV 790
+ + L+ +S+P++V
Sbjct: 849 LKQ-ELIIDSIPNTV 862

Score = 30.0 bits (66), Expect(2) = 3e-08
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1

Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489
L+I SIP+++ + L GF+ L GIIP V+ L
Sbjct: 724 LIIDSIPSTLTTVILCDGFNQKLTKGIIPEGVKVL 758

Score = 47.4 bits (111), Expect(2) = 6e-08
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2

Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745
+TKG+IPE V++L + D K I SIP+TV + L GFN K IIP V ++ I
Sbjct: 961 LTKGIIPESVKELYIDDIKQELIIDSIPNTVTTVRLLDGFNQKLTKGIIPEWVKELHIGD 1020

Query: 746 IGECALLXESVPDSVKYAFL 805
I + L+ +S+P+++ ++
Sbjct: 1021 IKQ-ELIIDSIPNTLNNVYI 1039

Score = 33.1 bits (74), Expect(2) = 6e-08
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1

Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDLDL 495
L+I SIPN+V + L GF+ L GIIP V+ L L
Sbjct: 896 LIIDSIPNTVTTVILCDGFNQKLTKGIIPEWVKGLCL 932

Score = 53.1 bits (126), Expect(2) = 2e-06
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +2

Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745
+TKG+IPEGV++L L D K I SIPST+ + L GFN K IIP GV + I
Sbjct: 703 LTKGIIPEGVKELRLGDIKQELIIDSIPSTLTTVILCDGFNQKLTKGIIPEGVKVLYIGD 762

Query: 746 IGECALLXESVPDSV 790
I + L+ +S+P++V
Sbjct: 763 IKQ-ELIIDSIPNTV 776

Score = 21.9 bits (45), Expect(2) = 2e-06
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1

Query: 376 NSVLLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489
N + + +PN+V L GF+ L GIIP V+ L
Sbjct: 638 NILSKLKKLPNNVL---LLSGFNQKLTKGIIPEGVKVL 672

Score = 51.6 bits (122), Expect = 3e-05
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = +2

Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYS 745
+TKG+IPEGV++L +S+ K I SIP+TV + L GFN K IIP GV + I +
Sbjct: 225 LTKGIIPEGVKELYISNIKQELIIDSIPNTVTTVGLCDGFNQKLTKGIIPEGVKVLYIGN 284

Query: 746 IGECALLXESVPDSV 790
I + L+ +S+P++V
Sbjct: 285 IKQ-VLIIDSIPNNV 298

Score = 50.8 bits (120), Expect = 5e-05
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = +2

Query: 518 ISKFNQRF*IFK*I*FTITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHP 694
+S FNQ+ +TKG+IPEGV+ L + D K I SIP+TV + L +GFN
Sbjct: 653 LSGFNQK----------LTKGIIPEGVKVLYIGDIKQELIIDSIPNTVTTVGLWYGFNQK 702

Query: 695 XVKEIIPCGVXKMSIYSIGECALLXESVPDSVKYAFL 805
K IIP GV ++ + I + L+ +S+P ++ L
Sbjct: 703 LTKGIIPEGVKELRLGDIKQ-ELIIDSIPSTLTTVIL 738

Score = 35.0 bits (79), Expect(2) = 0.004
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2

Query: 569 ITKGMIPEGVEKLELSD-KNINIPLSIPSTVKELTLSHGFNHPXVK 703
+TKG+IPEGV+ L + + K + I SIP+ V + L GFN K
Sbjct: 268 LTKGIIPEGVKVLYIGNIKQVLIIDSIPNNVTTVGLCDGFNQKLTK 313

Score = 28.9 bits (63), Expect(2) = 0.004
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1

Query: 328 ENQDQTPLSAD--KMNSQNSVLLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489
EN + + LS D + +++ ++ + K+ L +GF+ L GIIP V++L
Sbjct: 182 ENDESSILSGDFESLAFKDNCNILSKLTKLPNKVLLLNGFNQKLTKGIIPEGVKEL 237

Score = 38.1 bits (87), Expect = 0.34
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1

Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489
L+I SIPN+V ++L GF+ L GIIP SV++L
Sbjct: 939 LIIDSIPNTVTTVRLLDGFNQKLTKGIIPESVKEL 973

Score = 37.7 bits (86), Expect = 0.45
Identities = 28/90 (31%), Positives = 40/90 (44%)
Frame = +1

Query: 226 IPNTFTFLMTVFKYCLSLTTGTNKTSAPPTNKDQENQDQTPLSADKMNSQNSVLLIGSIP 405
IPNT T + + + LT G S D Q+ L+I SIP
Sbjct: 944 IPNTVTTVRLLDGFNQKLTKGIIPESVKELYIDDIKQE---------------LIIDSIP 988

Query: 406 NSVRKIKLSHGFSHDLPIGIIPHSVEDLDL 495
N+V ++L GF+ L GIIP V++L +
Sbjct: 989 NTVTTVRLLDGFNQKLTKGIIPEWVKELHI 1018

Score = 34.7 bits (78), Expect = 3.8
Identities = 29/98 (29%), Positives = 43/98 (43%)
Frame = +2

Query: 497 SKNRNWHISKFNQRF*IFK*I*FTITKGMIPEGVEKLELSDKNINIPLSIPSTVKELTLS 676
S N+N I N F I+ + + + E L D N NI + + L
Sbjct: 598 SNNKNEFIKILNHNFYIYS---ESDESSFLTDDFESLAFKD-NCNILSKLKKLPNNVLLL 653

Query: 677 HGFNHPXVKEIIPCGVXKMSIYSIGECALLXESVPDSV 790
GFN K IIP GV + I I + L+ +S+P++V
Sbjct: 654 SGFNQKLTKGIIPEGVKVLYIGDIKQ-ELIIDSIPNTV 690

Score = 33.5 bits (75), Expect = 8.5
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +2

Query: 599 EKLELSDKNINIPLSIPSTVKELTLSHGFNHPXVKEIIPCGVXKMSIYSIGECALLXESV 778
E L D N NI + ++ L +GFN K IIP GV ++ I +I + L+ +S+
Sbjct: 194 ESLAFKD-NCNILSKLTKLPNKVLLLNGFNQKLTKGIIPEGVKELYISNIKQ-ELIIDSI 251

Query: 779 PDSV 790
P++V
Sbjct: 252 PNTV 255

Score = 33.5 bits (75), Expect = 8.5
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1

Query: 385 LLIGSIPNSVRKIKLSHGFSHDLPIGIIPHSVEDL 489
L+I SIPN+V + L GF+ L GIIP V+ L
Sbjct: 246 LIIDSIPNTVTTVGLCDGFNQKLTKGIIPEGVKVL 280

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,246,444,607
Number of extensions: 25537207
Number of successful extensions: 44514
Number of sequences better than 10.0: 32
Number of HSP's gapped: 44451
Number of HSP's successfully gapped: 172
Length of query: 270
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 144
Effective length of database: 643,374,430
Effective search space: 92645917920
Effective search space used: 92645917920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.88 gvh: 0.53 alm: 0.41 top: 0.43 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U12340-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0