Contig-U12316-1 |
Contig ID |
Contig-U12316-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1238 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
1925901 |
End point |
1927143 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
5 |
Number of EST |
6 |
Link to clone list |
U12316 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.30 |
Homology vs DNA |
Query= Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Contig-U12316-1Q.Seq.d (1248 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ446746) Dictyostelium discoideum cDNA clone:ddv63p15, 3' ... 950 0.0 4 (BJ413333) Dictyostelium discoideum cDNA clone:ddv15j02, 5' ... 884 0.0 2 (BJ431690) Dictyostelium discoideum cDNA clone:ddv15j02, 3' ... 573 0.0 2 (BJ440854) Dictyostelium discoideum cDNA clone:ddv44n22, 3' ... 545 e-160 4 (BJ445981) Dictyostelium discoideum cDNA clone:ddv61c08, 3' ... 361 e-111 3 (BJ444271) Dictyostelium discoideum cDNA clone:ddv55g24, 3' ... 151 8e-32 1 (CU856258) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.20 1 (AC183121) Bos taurus clone CH240-101P11, WORKING DRAFT SEQU... 38 0.29 6 (DB828534) Nilaparvata lugens mRNA, EST clone:NLNB2810, 5' e... 34 0.30 3 (AL928796) Mouse DNA sequence from clone RP23-150I5 on chrom... 48 0.81 1 (AC125397) Mus musculus BAC clone RP24-206J16 from chromosom... 48 0.81 1 (AC113194) Homo sapiens chromosome 8, clone RP11-1070A24, co... 48 0.81 1 (AC095320) Rattus norvegicus clone CH230-141D12, WORKING DRA... 48 0.81 1 (AC023132) Homo sapiens chromosome 8 clone RP11-421C14, WORK... 48 0.81 1 (BH132199) ENTOP57TF Entamoeba histolytica Sheared DNA Entam... 48 0.81 1 (DH573395) Rattus norvegicus DNA, BAC clone: RNB1-089K16, 5'... 48 0.81 1 (CE236957) tigr-gss-dog-17000333395098 Dog Library Canis lup... 48 0.81 1 (AX344572) Sequence 23 from Patent WO0200932. 42 1.4 8 (AL138803) Human DNA sequence *** SEQUENCING CANCELLED *** f... 32 1.6 2 (AL121905) Human DNA sequence from clone RP4-534B8 on chromo... 32 1.7 2 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 32 1.7 11 (BX248583) Blochmannia floridanus complete genome. 44 1.8 14 (EA086134) Sequence 7 from patent US 7186550. 32 1.9 2 (AX033915) Sequence 7 from Patent WO9851790. 32 1.9 2 (AC179152) Strongylocentrotus purpuratus clone R3-4012J23, W... 46 3.2 1 (AC177071) Strongylocentrotus purpuratus clone R3-4004J21, W... 46 3.2 1 (AZ676515) ENTHE42TR Entamoeba histolytica Sheared DNA Entam... 46 3.2 1 (FH720222) CHO_OF5061xa06r1.ab1 CHO_OF5 Nicotiana tabacum ge... 46 3.2 1 (FH553640) CHO_OF4220xa23r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1 (FH553565) CHO_OF4220xa23f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1 (FH469422) CHO_OF4965xh22f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1 (FH446390) CHO_OF4701xn04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1 (FH444333) CHO_OF4697xa05r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1 (FH440085) CHO_OF4609xm02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1 (FH418217) CHO_OF4885xk05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1 (FH253049) CHO_OF3213xc08r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1 (FH215952) CHO_OF3265xf17r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1 (FH183892) CHO_OF3052xl13r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1 (FH183815) CHO_OF3052xl13f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1 (FH144346) CHO_OF3684xm01r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1 (FH144290) CHO_OF3684xm01f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1 (FH050426) CHO_OF3321xa20r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1 (ET895885) CHO_OF150xb06r2.ab1 CHO_OF Nicotiana tabacum geno... 46 3.2 1 (ET814958) CHO_OF889xl01r1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.2 1 (ET814877) CHO_OF889xl01f1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.2 1 (DX538978) GH_MBb0069D01r GH_MBb Gossypium hirsutum genomic ... 46 3.2 1 (CW955390) TcB45.3_C10_SP6 Tribolium BAC library Tribolium c... 46 3.2 1 (ES554725) EST000169 cDNA library of red fruit Panax ginseng... 46 3.2 1 (BP533011) Nicotiana tabacum cDNA, clone: BY29062, primer: M... 46 3.2 1 (AC136272) Rattus norvegicus clone CH230-92L10, *** SEQUENCI... 42 6.1 4 (EH657036) USDA-FP_183969 Adult Blue-green Sharpshooter (WHG... 38 6.9 2 (AP007888) Lotus japonicus genomic DNA, chromosome 1, clone:... 34 6.9 6 (AC181871) Strongylocentrotus purpuratus clone R3-1019I20, W... 38 7.7 8 (EK057688) 1092960042975 Global-Ocean-Sampling_GS-31-01-01-1... 34 8.0 2 (DN906334) 34183.3 In vitro Root Solanum tuberosum cDNA clon... 34 8.0 2 (EK052262) 1092959716120 Global-Ocean-Sampling_GS-31-01-01-1... 34 8.0 2 (EJ723318) 1092959469287 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.0 2 (EC430456) 132653530 Sea Urchin Gut cDNA library Strongyloce... 32 8.1 2 (EC428957) 132666959 Sea Urchin Gut cDNA library Strongyloce... 32 8.1 2 (CV666652) LCPE04EX020057D04.g Exponential growth phase Leis... 42 8.9 2 (CZ958692) 309019 Tomato EcoRI BAC Library Solanum lycopersi... 34 8.9 3 (CU861988) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.0 5 (AC219573) Bos taurus clone CH240-329C5, WORKING DRAFT SEQUE... 38 9.5 7 (BV374780) S231P6612FD3.T0 BedlingtonTerrier Canis familiari... 42 9.6 2
>(BJ446746) Dictyostelium discoideum cDNA clone:ddv63p15, 3' end, single read. Length = 739
Score = 950 bits (479), Expect(4) = 0.0 Identities = 479/479 (100%) Strand = Plus / Minus
Query: 521 taaaggttcagtaagtgcatcaaattcaaagaagagtaaattaattaatttctatacaac 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 739 taaaggttcagtaagtgcatcaaattcaaagaagagtaaattaattaatttctatacaac 680
Query: 581 tctttctgtcactggtcaacaattaaatagtaaagaattccaagatggtatgttatctca 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 679 tctttctgtcactggtcaacaattaaatagtaaagaattccaagatggtatgttatctca 620
Query: 641 attcacagagttattagttgagaatttaacatgtttcaattatcatattggtttccctga 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 619 attcacagagttattagttgagaatttaacatgtttcaattatcatattggtttccctga 560
Query: 701 attaactaccccagtaattctccatttgaaaaaagcacttaaaagtaaacaatatagacc 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 attaactaccccagtaattctccatttgaaaaaagcacttaaaagtaaacaatatagacc 500
Query: 761 aaaggttttatcagatattcaagagattttagaagcaattgaaaaaacttcaaaattagt 820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 aaaggttttatcagatattcaagagattttagaagcaattgaaaaaacttcaaaattagt 440
Query: 821 taaacaacaaagagatcaagtttctttctctccaaaagaaactaaacaaattcaagcttt 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 taaacaacaaagagatcaagtttctttctctccaaaagaaactaaacaaattcaagcttt 380
Query: 881 ctctgatgctctcaaagagaaatacaaaatcactccattaaaacaattattattaacact 940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 ctctgatgctctcaaagagaaatacaaaatcactccattaaaacaattattattaacact 320
Query: 941 taaaaagaaaagtaaacaacttcaacaaactcttattgaatcaactaaaacttataatt 999 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 taaaaagaaaagtaaacaacttcaacaaactcttattgaatcaactaaaacttataatt 261
Score = 40.1 bits (20), Expect(4) = 0.0 Identities = 20/20 (100%) Strand = Plus / Minus
Query: 1213 tgaagatttagttttatcag 1232 |||||||||||||||||||| Sbjct: 51 tgaagatttagttttatcag 32
Score = 30.2 bits (15), Expect(4) = 0.0 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 1193 gtaatgatgatgata 1207 ||||||||||||||| Sbjct: 68 gtaatgatgatgata 54
Score = 26.3 bits (13), Expect(4) = 0.0 Identities = 13/13 (100%) Strand = Plus / Minus
Query: 1179 gttgaacgtgaag 1191 ||||||||||||| Sbjct: 81 gttgaacgtgaag 69
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,330,298,650 Number of extensions: 85915875 Number of successful extensions: 7020460 Number of sequences better than 10.0: 64 Length of query: 1248 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1224 Effective length of database: 97,308,875,965 Effective search space: 119106064181160 Effective search space used: 119106064181160 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 2 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
4 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |