Contig-U12316-1
Contig ID Contig-U12316-1
Contig update 2002.12.18
Contig sequence
>Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Contig-U12316-1Q.Seq.d
GTTAGTACAACATCATTACCATTAATTAATTTCATGTGTAATTGTGTTAT
TGAAATCTATGGTTTAGATTTCGCAAGTTCATATCGTAGTGCATTTGTTT
ATGTTCGTCAATTAGCAGTACATCTTAGAAATTCATTAAATACCAACACT
AAAGAATCTTTCCAAAATATTTACAATTGGCAATTTATAAATAGTGTCCG
TGCATGGGTTGAAGTTTTATCAGCATATCCAGGCCAAGAACAAATTTCAC
AATTGTTATACCCAATAACTCAAATTGTAATTGGTATGATTAATTTAATT
CCATCAAGTAAATTCCTTCCATTACGTTTCCATTGTATTCGTTTCCCTAA
TCGTTTAGCTGAAACAAATGGTTCATTCATCAATTGTACACCTTATTTAT
TGGATGTTTTAGAATACTCTGAAATGAAACAAAAATCAGGTAAAAATGGT
GGTGGTAGTGGTAGTGGTGGGTGGTGCCGCTGCCTCTGATAAAGGTTCAG
TAAGTGCATC----------TAAAGGTTCAGTAAGTGCATCAAATTCAAA
GAAGAGTAAATTAATTAATTTCTATACAACTCTTTCTGTCACTGGTCAAC
AATTAAATAGTAAAGAATTCCAAGATGGTATGTTATCTCAATTCACAGAG
TTATTAGTTGAGAATTTAACATGTTTCAATTATCATATTGGTTTCCCTGA
ATTAACTACCCCAGTAATTCTCCATTTGAAAAAAGCACTTAAAAGTAAAC
AATATAGACCAAAGGTTTTATCAGATATTCAAGAGATTTTAGAAGCAATT
GAAAAAACTTCAAAATTAGTTAAACAACAAAGAGATCAAGTTTCTTTCTC
TCCAAAAGAAACTAAACAAATTCAAGCTTTCTCTGATGCTCTCAAAGAGA
AATACAAAATCACTCCATTAAAACAATTATTATTAACACTTAAAAAGAAA
AGTAAACAACTTCAACAAACTCTTATTGAATCAACTAAAACTTATAATTA
TGAAGATGATGATGAAGATGATGAAGATGATGAAGATGATGAAGAAAATT
ATGATGATGATGAAGAAGAAGATGATGAAGATGAAGAAGACTTATACCAT
GAAGATGAAGAACAAGAAAAACAACCAACTAAAAAATCAAAAACAATTAC
TAAATTACCAAAGAAACCAAAATTCAAAGTTGAACGTGAAGAGTAATGAT
GATGATATGAGTTGAAGATTTAGTTTTATCAGNANGAANAAATAAGAT

Gap gap included
Contig length 1238
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1925901
End point 1927143
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 6
Link to clone list U12316
List of clone(s)

est1=VFH405F,1,511
est2=VHQ364Z,512,1257
est3=VFH405Z,702,1223
est4=VHP226Z,715,1242
est5=VHG887Z,716,1240
est6=VHM292Z,915,1174
Translated Amino Acid sequence
lvqhhyh*liscvivllksmv*isqvhivvhlfmfvn*qyileih*iptlknlskiftig
nl*ivsvhglkfyqhiqaknkfhncytq*lkl*lv*li*fhqvnsfhyvsivfvsliv*l
kqmvhssivhliywmf*ntlk*NKNQVKMVVVVVVVGGAAASDKGSVSA---

---KGSVSASNSKKSKLINFYTTLSVTGQQLNSKEFQDGMLSQFTELLVENLTCFNYHIG
FPELTTPVILHLKKALKSKQYRPKVLSDIQEILEAIEKTSKLVKQQRDQVSFSPKETKQI
QAFSDALKEKYKITPLKQLLLTLKKKSKQLQQTLIESTKTYNYEDDDEDDEDDEDDEENY
DDDEEEDDEDEEDLYHEDEEQEKQPTKKSKTITKLPKKPKFKVEREE****yelki*fyq
xexir


Translated Amino Acid sequence (All Frames)
Frame A:
vsttslplinfmcncvieiygldfassyrsafvyvrqlavhlrnslntntkesfqniynw
qfinsvrawvevlsaypgqeqisqllypitqivigminlipsskflplrfhcirfpnrla
etngsfinctpylldvleysemkqksgkngggsgsggwcrcl**rfskci---

---*rfskcikfkee*in*flynsfchwstik**riprwyvisihrvis*efnmfqlsyw
fp*inypsnspfekst*k*ti*tkgfirysrdfrsn*knfkis*ttkrssfflskrn*tn
ssfl*csqreiqnhsiktiiint*kek*ttstnsy*in*nl*l*r***r**r**r**rkl
****rrr**r*rrlip*r*rtrkttn*kiknny*itketkiqs*t*rvmmmi*vedlvls
xxxnk

Frame B:
lvqhhyh*liscvivllksmv*isqvhivvhlfmfvn*qyileih*iptlknlskiftig
nl*ivsvhglkfyqhiqaknkfhncytq*lkl*lv*li*fhqvnsfhyvsivfvsliv*l
kqmvhssivhliywmf*ntlk*NKNQVKMVVVVVVVGGAAASDKGSVSA---

---KGSVSASNSKKSKLINFYTTLSVTGQQLNSKEFQDGMLSQFTELLVENLTCFNYHIG
FPELTTPVILHLKKALKSKQYRPKVLSDIQEILEAIEKTSKLVKQQRDQVSFSPKETKQI
QAFSDALKEKYKITPLKQLLLTLKKKSKQLQQTLIESTKTYNYEDDDEDDEDDEDDEENY
DDDEEEDDEDEEDLYHEDEEQEKQPTKKSKTITKLPKKPKFKVEREE****yelki*fyq
xexir

Frame C:
*yniitin*fhv*lcy*nlwfrfrkfis*ciclcssissts*kfikyqh*rifpkylqla
iyk*cpcmg*sfisisrprtnftivipnnsncnwyd*fnsik*ipsitfplysfp*sfs*
nkwfihqlytlfigcfril*netkir*kwww*w*wwvvplplikvq*vh---

---kvq*vhqiqrrvn*lisiqlflslvnn*ivknskmvcylnsqsy*lri*hvsiiilv
sln*lpq*fsi*kkhlkvnnidqrfyqifkrf*kqlkklqn*lnnkeikflslqkklnkf
klslmlskrntkslh*nnyy*hlkrkvnnfnklllnqlkliimkmmmkmmkmmkmmkkim
mmmkkkmmkmkktytmkmknkknnqlknqkqllnyqrnqnsklnvksndddms*rfsfix
xxk*d

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12316-1 (Contig-U12316-1Q)
/CSM_Contig/Contig-U12316-1Q.Seq.d
(1248 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Conti... 977 0.0
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U09407-1 (Contig-U09407-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U13086-1 (Contig-U13086-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U13062-1 (Contig-U13062-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U11179-1 (Contig-U11179-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U00536-1 (Contig-U00536-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U00298-1 (Contig-U00298-1Q) /CSM_Contig/Conti... 36 0.088

>Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Contig-U12316-1Q.Seq.d
Length = 1248

Score = 977 bits (493), Expect = 0.0
Identities = 523/523 (100%)
Strand = Plus / Plus


Query: 477 ccgctgcctctgataaaggttcagtaagtgcatcnnnnnnnnnntaaaggttcagtaagt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ccgctgcctctgataaaggttcagtaagtgcatcnnnnnnnnnntaaaggttcagtaagt 536


Query: 537 gcatcaaattcaaagaagagtaaattaattaatttctatacaactctttctgtcactggt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gcatcaaattcaaagaagagtaaattaattaatttctatacaactctttctgtcactggt 596


Query: 597 caacaattaaatagtaaagaattccaagatggtatgttatctcaattcacagagttatta 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 caacaattaaatagtaaagaattccaagatggtatgttatctcaattcacagagttatta 656


Query: 657 gttgagaatttaacatgtttcaattatcatattggtttccctgaattaactaccccagta 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gttgagaatttaacatgtttcaattatcatattggtttccctgaattaactaccccagta 716


Query: 717 attctccatttgaaaaaagcacttaaaagtaaacaatatagaccaaaggttttatcagat 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 attctccatttgaaaaaagcacttaaaagtaaacaatatagaccaaaggttttatcagat 776


Query: 777 attcaagagattttagaagcaattgaaaaaacttcaaaattagttaaacaacaaagagat 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 attcaagagattttagaagcaattgaaaaaacttcaaaattagttaaacaacaaagagat 836


Query: 837 caagtttctttctctccaaaagaaactaaacaaattcaagctttctctgatgctctcaaa 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 caagtttctttctctccaaaagaaactaaacaaattcaagctttctctgatgctctcaaa 896


Query: 897 gagaaatacaaaatcactccattaaaacaattattattaacacttaaaaagaaaagtaaa 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gagaaatacaaaatcactccattaaaacaattattattaacacttaaaaagaaaagtaaa 956


Query: 957 caacttcaacaaactcttattgaatcaactaaaacttataatt 999
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 caacttcaacaaactcttattgaatcaactaaaacttataatt 999


Score = 884 bits (446), Expect = 0.0
Identities = 446/446 (100%)
Strand = Plus / Plus


Query: 1 gttagtacaacatcattaccattaattaatttcatgtgtaattgtgttattgaaatctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttagtacaacatcattaccattaattaatttcatgtgtaattgtgttattgaaatctat 60


Query: 61 ggtttagatttcgcaagttcatatcgtagtgcatttgtttatgttcgtcaattagcagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtttagatttcgcaagttcatatcgtagtgcatttgtttatgttcgtcaattagcagta 120


Query: 121 catcttagaaattcattaaataccaacactaaagaatctttccaaaatatttacaattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catcttagaaattcattaaataccaacactaaagaatctttccaaaatatttacaattgg 180


Query: 181 caatttataaatagtgtccgtgcatgggttgaagttttatcagcatatccaggccaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caatttataaatagtgtccgtgcatgggttgaagttttatcagcatatccaggccaagaa 240


Query: 241 caaatttcacaattgttatacccaataactcaaattgtaattggtatgattaatttaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caaatttcacaattgttatacccaataactcaaattgtaattggtatgattaatttaatt 300


Query: 301 ccatcaagtaaattccttccattacgtttccattgtattcgtttccctaatcgtttagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccatcaagtaaattccttccattacgtttccattgtattcgtttccctaatcgtttagct 360


Query: 361 gaaacaaatggttcattcatcaattgtacaccttatttattggatgttttagaatactct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaacaaatggttcattcatcaattgtacaccttatttattggatgttttagaatactct 420


Query: 421 gaaatgaaacaaaaatcaggtaaaaa 446
||||||||||||||||||||||||||
Sbjct: 421 gaaatgaaacaaaaatcaggtaaaaa 446


Score = 121 bits (61), Expect = 2e-27
Identities = 70/70 (100%)
Strand = Plus / Plus


Query: 1179 gttgaacgtgaagagtaatgatgatgatatgagttgaagatttagttttatcagnangaa 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 gttgaacgtgaagagtaatgatgatgatatgagttgaagatttagttttatcagnangaa 1238


Query: 1239 naaataagat 1248
||||||||||
Sbjct: 1239 naaataagat 1248


>Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Contig-U11129-1Q.Seq.d
Length = 2907

Score = 38.2 bits (19), Expect = 0.022
Identities = 25/27 (92%)
Strand = Plus / Plus


Query: 765 gttttatcagatattcaagagatttta 791
||||||||||| |||||||| ||||||
Sbjct: 1970 gttttatcagaaattcaagacatttta 1996


>Contig-U09407-1 (Contig-U09407-1Q) /CSM_Contig/Contig-U09407-1Q.Seq.d
Length = 1047

Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 596 tcaacaattaaatagtaaa 614
|||||||||||||||||||
Sbjct: 910 tcaacaattaaatagtaaa 928


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,250
Number of Sequences: 6905
Number of extensions: 19250
Number of successful extensions: 1969
Number of sequences better than 10.0: 194
length of query: 1248
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1232
effective length of database: 5,564,391
effective search space: 6855329712
effective search space used: 6855329712
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Contig-U12316-1Q.Seq.d
(1248 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446746) Dictyostelium discoideum cDNA clone:ddv63p15, 3' ... 950 0.0 4
(BJ413333) Dictyostelium discoideum cDNA clone:ddv15j02, 5' ... 884 0.0 2
(BJ431690) Dictyostelium discoideum cDNA clone:ddv15j02, 3' ... 573 0.0 2
(BJ440854) Dictyostelium discoideum cDNA clone:ddv44n22, 3' ... 545 e-160 4
(BJ445981) Dictyostelium discoideum cDNA clone:ddv61c08, 3' ... 361 e-111 3
(BJ444271) Dictyostelium discoideum cDNA clone:ddv55g24, 3' ... 151 8e-32 1
(CU856258) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.20 1
(AC183121) Bos taurus clone CH240-101P11, WORKING DRAFT SEQU... 38 0.29 6
(DB828534) Nilaparvata lugens mRNA, EST clone:NLNB2810, 5' e... 34 0.30 3
(AL928796) Mouse DNA sequence from clone RP23-150I5 on chrom... 48 0.81 1
(AC125397) Mus musculus BAC clone RP24-206J16 from chromosom... 48 0.81 1
(AC113194) Homo sapiens chromosome 8, clone RP11-1070A24, co... 48 0.81 1
(AC095320) Rattus norvegicus clone CH230-141D12, WORKING DRA... 48 0.81 1
(AC023132) Homo sapiens chromosome 8 clone RP11-421C14, WORK... 48 0.81 1
(BH132199) ENTOP57TF Entamoeba histolytica Sheared DNA Entam... 48 0.81 1
(DH573395) Rattus norvegicus DNA, BAC clone: RNB1-089K16, 5'... 48 0.81 1
(CE236957) tigr-gss-dog-17000333395098 Dog Library Canis lup... 48 0.81 1
(AX344572) Sequence 23 from Patent WO0200932. 42 1.4 8
(AL138803) Human DNA sequence *** SEQUENCING CANCELLED *** f... 32 1.6 2
(AL121905) Human DNA sequence from clone RP4-534B8 on chromo... 32 1.7 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 32 1.7 11
(BX248583) Blochmannia floridanus complete genome. 44 1.8 14
(EA086134) Sequence 7 from patent US 7186550. 32 1.9 2
(AX033915) Sequence 7 from Patent WO9851790. 32 1.9 2
(AC179152) Strongylocentrotus purpuratus clone R3-4012J23, W... 46 3.2 1
(AC177071) Strongylocentrotus purpuratus clone R3-4004J21, W... 46 3.2 1
(AZ676515) ENTHE42TR Entamoeba histolytica Sheared DNA Entam... 46 3.2 1
(FH720222) CHO_OF5061xa06r1.ab1 CHO_OF5 Nicotiana tabacum ge... 46 3.2 1
(FH553640) CHO_OF4220xa23r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1
(FH553565) CHO_OF4220xa23f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1
(FH469422) CHO_OF4965xh22f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1
(FH446390) CHO_OF4701xn04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1
(FH444333) CHO_OF4697xa05r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1
(FH440085) CHO_OF4609xm02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1
(FH418217) CHO_OF4885xk05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.2 1
(FH253049) CHO_OF3213xc08r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1
(FH215952) CHO_OF3265xf17r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1
(FH183892) CHO_OF3052xl13r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1
(FH183815) CHO_OF3052xl13f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1
(FH144346) CHO_OF3684xm01r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1
(FH144290) CHO_OF3684xm01f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1
(FH050426) CHO_OF3321xa20r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.2 1
(ET895885) CHO_OF150xb06r2.ab1 CHO_OF Nicotiana tabacum geno... 46 3.2 1
(ET814958) CHO_OF889xl01r1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.2 1
(ET814877) CHO_OF889xl01f1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.2 1
(DX538978) GH_MBb0069D01r GH_MBb Gossypium hirsutum genomic ... 46 3.2 1
(CW955390) TcB45.3_C10_SP6 Tribolium BAC library Tribolium c... 46 3.2 1
(ES554725) EST000169 cDNA library of red fruit Panax ginseng... 46 3.2 1
(BP533011) Nicotiana tabacum cDNA, clone: BY29062, primer: M... 46 3.2 1
(AC136272) Rattus norvegicus clone CH230-92L10, *** SEQUENCI... 42 6.1 4
(EH657036) USDA-FP_183969 Adult Blue-green Sharpshooter (WHG... 38 6.9 2
(AP007888) Lotus japonicus genomic DNA, chromosome 1, clone:... 34 6.9 6
(AC181871) Strongylocentrotus purpuratus clone R3-1019I20, W... 38 7.7 8
(EK057688) 1092960042975 Global-Ocean-Sampling_GS-31-01-01-1... 34 8.0 2
(DN906334) 34183.3 In vitro Root Solanum tuberosum cDNA clon... 34 8.0 2
(EK052262) 1092959716120 Global-Ocean-Sampling_GS-31-01-01-1... 34 8.0 2
(EJ723318) 1092959469287 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.0 2
(EC430456) 132653530 Sea Urchin Gut cDNA library Strongyloce... 32 8.1 2
(EC428957) 132666959 Sea Urchin Gut cDNA library Strongyloce... 32 8.1 2
(CV666652) LCPE04EX020057D04.g Exponential growth phase Leis... 42 8.9 2
(CZ958692) 309019 Tomato EcoRI BAC Library Solanum lycopersi... 34 8.9 3
(CU861988) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.0 5
(AC219573) Bos taurus clone CH240-329C5, WORKING DRAFT SEQUE... 38 9.5 7
(BV374780) S231P6612FD3.T0 BedlingtonTerrier Canis familiari... 42 9.6 2

>(BJ446746) Dictyostelium discoideum cDNA clone:ddv63p15, 3' end,
single read.
Length = 739

Score = 950 bits (479), Expect(4) = 0.0
Identities = 479/479 (100%)
Strand = Plus / Minus


Query: 521 taaaggttcagtaagtgcatcaaattcaaagaagagtaaattaattaatttctatacaac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 taaaggttcagtaagtgcatcaaattcaaagaagagtaaattaattaatttctatacaac 680


Query: 581 tctttctgtcactggtcaacaattaaatagtaaagaattccaagatggtatgttatctca 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctttctgtcactggtcaacaattaaatagtaaagaattccaagatggtatgttatctca 620


Query: 641 attcacagagttattagttgagaatttaacatgtttcaattatcatattggtttccctga 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attcacagagttattagttgagaatttaacatgtttcaattatcatattggtttccctga 560


Query: 701 attaactaccccagtaattctccatttgaaaaaagcacttaaaagtaaacaatatagacc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 attaactaccccagtaattctccatttgaaaaaagcacttaaaagtaaacaatatagacc 500


Query: 761 aaaggttttatcagatattcaagagattttagaagcaattgaaaaaacttcaaaattagt 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaggttttatcagatattcaagagattttagaagcaattgaaaaaacttcaaaattagt 440


Query: 821 taaacaacaaagagatcaagtttctttctctccaaaagaaactaaacaaattcaagcttt 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaacaacaaagagatcaagtttctttctctccaaaagaaactaaacaaattcaagcttt 380


Query: 881 ctctgatgctctcaaagagaaatacaaaatcactccattaaaacaattattattaacact 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctctgatgctctcaaagagaaatacaaaatcactccattaaaacaattattattaacact 320


Query: 941 taaaaagaaaagtaaacaacttcaacaaactcttattgaatcaactaaaacttataatt 999
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taaaaagaaaagtaaacaacttcaacaaactcttattgaatcaactaaaacttataatt 261

Score = 40.1 bits (20), Expect(4) = 0.0
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 1213 tgaagatttagttttatcag 1232
||||||||||||||||||||
Sbjct: 51 tgaagatttagttttatcag 32

Score = 30.2 bits (15), Expect(4) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1193 gtaatgatgatgata 1207
|||||||||||||||
Sbjct: 68 gtaatgatgatgata 54

Score = 26.3 bits (13), Expect(4) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 1179 gttgaacgtgaag 1191
|||||||||||||
Sbjct: 81 gttgaacgtgaag 69

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,330,298,650
Number of extensions: 85915875
Number of successful extensions: 7020460
Number of sequences better than 10.0: 64
Length of query: 1248
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1224
Effective length of database: 97,308,875,965
Effective search space: 119106064181160
Effective search space used: 119106064181160
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Contig-U12316-1Q.Seq.d
(1248 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM269980_101(AM269980|pid:none) Aspergillus niger contig An01c03... 116 3e-37
CP001327_691(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 123 4e-37
CP000588_157(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 128 8e-37
FN392322_225(FN392322|pid:none) Pichia pastoris GS115 chromosome... 127 1e-36
AE017348_259(AE017348|pid:none) Cryptococcus neoformans var. neo... 108 8e-34
(Q9WV70) RecName: Full=Nucleolar complex protein 2 homolog; ... 139 2e-31
AJ720345_1(AJ720345|pid:none) Gallus gallus mRNA for hypothetica... 139 2e-31
AK133834_1(AK133834|pid:none) Mus musculus 8 days embryo whole b... 137 6e-31
BT059069_1(BT059069|pid:none) Salmo salar clone ssal-rgf-523-320... 136 1e-30
BT072685_1(BT072685|pid:none) Salmo salar clone ssal-rgf-536-233... 136 1e-30
(Q9ZPV5) RecName: Full=Nucleolar complex protein 2 homolog; ... 135 2e-30
BC115106_1(BC115106|pid:none) Danio rerio zgc:195326, mRNA (cDNA... 135 2e-30
BC134884_1(BC134884|pid:none) Danio rerio zgc:195326, mRNA (cDNA... 135 2e-30
CR382130_494(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 101 2e-29
AK022756_1(AK022756|pid:none) Homo sapiens cDNA FLJ12694 fis, cl... 130 1e-28
T08706(T08706)hypothetical protein DKFZp564C186.1 - human (fragm... 130 1e-28
AM424825_3(AM424825|pid:none) Vitis vinifera contig VV78X067790.... 94 4e-28
CR382126_45(CR382126|pid:none) Kluyveromyces lactis strain NRRL ... 123 1e-26
CR382139_1094(CR382139|pid:none) Debaryomyces hansenii chromosom... 122 3e-26
CU928168_406(CU928168|pid:none) Kluyveromyces thermotolerans str... 122 3e-26
(P39744) RecName: Full=Nucleolar complex protein 2; &S67098(S67... 118 4e-25
BC060851_1(BC060851|pid:none) Homo sapiens nucleolar complex ass... 118 5e-25
(Q8LNU5) RecName: Full=Nucleolar complex protein 2 homolog; ... 116 1e-24
FM992695_490(FM992695|pid:none) Candida dubliniensis CD36 chromo... 116 2e-24
AK302229_1(AK302229|pid:none) Homo sapiens cDNA FLJ61647 complet... 114 7e-24
AY083607_9(AY083607|pid:none) Candida glabrata strain ATCC 2001 ... 114 7e-24
CR380958_115(CR380958|pid:none) Candida glabrata strain CBS138 c... 114 7e-24
AE016817_124(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 107 9e-22
AM494955_163(AM494955|pid:none) Leishmania braziliensis chromoso... 106 2e-21
(O13874) Uncharacterized NOC2 family protein C1B3.09c. &CU32967... 66 1e-19
DQ536171_1(DQ536171|pid:none) Populus trichocarpa clone 19012879... 97 2e-18
(O17580) RecName: Full=Nucleolar complex protein 2 homolog; ... 95 5e-18
EU068465_1(EU068465|pid:none) Caenorhabditis elegans PRO-2 (pro-... 95 5e-18
(A8WTM7) RecName: Full=Nucleolar complex protein 2 homolog; ... 94 8e-18
AL132975_17(AL132975|pid:none) Arabidopsis thaliana DNA chromoso... 87 2e-15
AK226780_1(AK226780|pid:none) Arabidopsis thaliana mRNA for hypo... 87 2e-15
AK070504_1(AK070504|pid:none) Oryza sativa Japonica Group cDNA c... 86 2e-15
AY085997_1(AY085997|pid:none) Arabidopsis thaliana clone 205700 ... 86 4e-15
BC093409_1(BC093409|pid:none) Danio rerio zgc:195326, mRNA (cDNA... 64 1e-08
AF155546_1(AF155546|pid:none) Mus musculus hypothetical protein ... 62 4e-08
S83321_1(S83321|pid:none) Dekkera bruxellensis RAD4 protein (RAD... 53 3e-05
AL590451_53(AL590451|pid:none) chromosome IX of strain GB-M1 of ... 46 0.003
AY967390_1(AY967390|pid:none) Synthetic construct isolate FTT128... 42 0.046
CP000608_444(CP000608|pid:none) Francisella tularensis subsp. tu... 42 0.046
CP000439_1273(CP000439|pid:none) Francisella tularensis subsp. n... 42 0.046
AM233362_1172(AM233362|pid:none) Francisella tularensis subsp. h... 42 0.060
CP000803_966(CP000803|pid:none) Francisella tularensis subsp. ho... 41 0.079
AY811853_1(AY811853|pid:none) Schistosoma japonicum SJCHGC09505 ... 41 0.10
AE010300_2320(AE010300|pid:none) Leptospira interrogans serovar ... 37 1.1
CP001130_1576(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c... 36 2.5
CU633897_285(CU633897|pid:none) Podospora anserina genomic DNA c... 35 4.3
AE014134_1216(AE014134|pid:none) Drosophila melanogaster chromos... 35 5.6
CP000348_1351(CP000348|pid:none) Leptospira borgpetersenii serov... 35 5.6
AP008934_1697(AP008934|pid:none) Staphylococcus saprophyticus su... 35 7.3
(A6LTP1) RecName: Full=Aspartyl-tRNA synthetase; EC=6.1... 35 7.3

>AM269980_101(AM269980|pid:none) Aspergillus niger contig An01c0330,
complete genome.
Length = 777

Score = 116 bits (291), Expect(2) = 3e-37
Identities = 58/147 (39%), Positives = 91/147 (61%), Gaps = 9/147 (6%)
Frame = +1

Query: 13 SLPLINFMCNCVIEIYGLDFASSYRSAFVYVRQLAVHLRNSLNTNTKESFQNIYNWQFIN 192
+LP +N M N E++G+D SY + F ++RQLA+HLR+S+ +KES++ +YNWQ+++
Sbjct: 402 TLPGVNLMKNSAAELWGVDQNVSYTTGFNFIRQLAMHLRSSITNTSKESYKTVYNWQYVH 461

Query: 193 SVRAWVEVLSAY---------PGQEQISQLLYPITQIVIGMINLIPSSKFLPLRFHCIRF 345
S+ W VLS + Q + L+YP+ QI IG + LIP++++ PLRF R
Sbjct: 462 SLDFWSRVLSQHCDGLAEAKAGKQSAMRPLIYPVVQITIGAMRLIPTAQYFPLRFQLTRS 521

Query: 346 PNRLAETNGSFINCTPYLLDVLEYSEM 426
RL+ + G++I LL+VL SEM
Sbjct: 522 LLRLSRSTGTYIPLASSLLEVLNLSEM 548

Score = 63.5 bits (153), Expect(2) = 3e-37
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Frame = +3

Query: 546 SKKSKLINFYTTLSVTGQQLNSKEFQDGMLSQFTELLVENLTCFNYHIGFPELTTPVILH 725
S + ++F T + L ++ +QDG+ Q ELL E + HI FPEL+ P+++
Sbjct: 554 SSTLRQLDFNTAIRAPKSYLRTRVYQDGVGEQIAELLSEFFVLWTKHIAFPELSVPIVVS 613

Query: 726 LKKALKSKQYR------PKVLSDIQEILEAIEKTSKLVKQQRDQVSFSPKETKQIQAF 881
LK+ LK R KV I +++ +E ++ ++++R VS++P+ +++ F
Sbjct: 614 LKRWLKQASSRSGGNKNAKVNQMILLLVQKVEANARFIEERRLSVSYTPRNRAEVETF 671

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,448,780,098
Number of extensions: 24407214
Number of successful extensions: 54871
Number of sequences better than 10.0: 55
Number of HSP's gapped: 54818
Number of HSP's successfully gapped: 90
Length of query: 416
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 285
Effective length of database: 627,191,635
Effective search space: 178749615975
Effective search space used: 178749615975
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.98 gvh: 0.66 alm: 0.48 top: 0.40 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.13 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
28.0 %: extracellular, including cell wall
16.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for Contig-U12316-1 is nuc

VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0