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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01919-1
Contig ID Contig-U01919-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U01919-1 (Contig-U01919-1Q) /CSM_Contig/Contig-U01919-1Q.Seq.d
ACACAGTATTGCAATTACTAGCAGGCAAAAACGTTAACGAAAATCAAAAA
TAAAAGTTATAATTTAATTTTATTTAATATATCATTAAAATAAATAAATT
ATAATAATTATAATAAAAACTTTGGTGAATCTGTGTGTATATAGATTTTT
TTTAGCTTTCAAAACCATATAGTAATATTAAAAAAAAAAAAAACAAGTAT
TGCAAGAAAAAAAAAAAAAAACATCAAAATCAGACATTTTATATATATAT
AGATCAAGTTAATAAATAATTATTAAAGAATAATATATAAT---------
-GCTGATATTCTTTATGGTTTAATTCATGCAAGATATATTTTGACACCAA
AAGGTCTTGCACATATGCACGAAAAATTTAAAAAAGCAGAGTTTGGCAGA
TGTCCACGTGTTTTTTGTCAAAATCAACCAGTCCTTCCAGTAGGTTTAGC
AGATATGCAAGGTGTTGATACAGTTAAAGTCTATTGCCCAAGATGCAATG
ACATTTTTAATCCAAAATACAGAAGACATTCACATATTGATGGTGCTTAT
TTCGGTACCACTTTTCCACATCTTTTATTAATTACTTACCCTGAATTAAT
TCCAACCAAACCACCACAACAATATATTCCTGAAATATATGGTTTCAAAA
TTCATAAATCTGCAAGAGAACGTCAACTTCAAATTCAACAAAAAAAGAAT
AGTCTTTCAAATAATAATCAAAATAATCAAAATAATAATATTAACAATAA
TAATAATAACAATAACAATAACAATAATAATAATAATAATAATAATAATA
ACCAACAAAATAATAATAACCAACAAAATAATAATACAAATAAATAAAAT
TTGAATTCAAATAAATTAAAAAAAAAAAAAAAACAAAAAAAAAAAACCAA
CGACTTGATGGATAGTGTTTTTAAAATACACATTCAACAACCTCCAAGTA
TGTGATAACGTAATTAATAAAACTAAATAAACTTTTTATT
Gap gap included
Contig length 980
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 3
Number of EST 4
Link to clone list U01919
List of clone(s) 

est1=SSK824F,1,292
est2=SSK824Z,293,862
est3=SSF550E,639,863
est4=VSA181Z,721,982
Translated Amino Acid sequence 
tqycny*qaktltkiknksynlilfnislk*inynnynknfgesvci*iffsfqnhivil
kkkktsiarkkkknikirhfiyi*iklinny*RIIYN---

---ADILYGLIHARYILTPKGLAHMHEKFKKAEFGRCPRVFCQNQPVLPVGLADMQGVDT
VKVYCPRCNDIFNPKYRRHSHIDGAYFGTTFPHLLLITYPELIPTKPPQQYIPEIYGFKI
HKSARERQLQIQQKKNSLSNNNQNNQNNNINNNNNNNNNNNNNNNNNNNNQQNNNNQQNN
NTNK*nlnsnklkkkkkqkkktndlmdsvfkihiqqppsm**rn**n*infl
Translated Amino Acid sequence (All Frames) 
Frame A:
tqycny*qaktltkiknksynlilfnislk*inynnynknfgesvci*iffsfqnhivil
kkkktsiarkkkknikirhfiyi*iklinny*RIIYN---

---ADILYGLIHARYILTPKGLAHMHEKFKKAEFGRCPRVFCQNQPVLPVGLADMQGVDT
VKVYCPRCNDIFNPKYRRHSHIDGAYFGTTFPHLLLITYPELIPTKPPQQYIPEIYGFKI
HKSARERQLQIQQKKNSLSNNNQNNQNNNINNNNNNNNNNNNNNNNNNNNQQNNNNQQNN
NTNK*nlnsnklkkkkkqkkktndlmdsvfkihiqqppsm**rn**n*infl

Frame B:
hsiaitsrqkr*rkskikvii*fyliyh*nk*iiiiiiktlvnlcvyrfflafkti**y*
kkkkqvlqekkkktsksdilyiyrss**iiike*yi---

---liffmv*fmqdif*hqkvlhictknlkkqsladvhvffvkinqsfq*v*qickvliq
lksiaqdamtfliqntedihilmvlisvplfhify*lltln*fqpnhhnniflkymvskf
inlqenvnfkfnkkrivfqiiikiikiiiltiiiitititiiiiiiiiitnkiiitnkii
iqinki*iqin*kkkknkkkkptt*wivflkytfnnlqvcdnvinktk*tfy

Frame C:
tvlqllagknvnenqk*kl*fnfi*yiikinkl**l**klw*icvyidff*lskpysnik
kkknkyckkkkkkhqnqtfyiyidqvnk*llknni*---

---*yslwfnsckiyfdtkrsctyarki*ksrvwqmstcflskstspssrfsryarc*ys
*sllpkmq*hf*skiqktfty*wclfryhfstsfinylp*insnqttttiys*niwfqns
*ickrtstsnstkke*sfk**sk*sk**y*q****q*q*q*********ptk***ptk**
yk*ikfefk*ikkkkktkkknqrldg*cf*nthsttskyvit*liklnklfi
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01919-1 (Contig-U01919-1Q)
/CSM_Contig/Contig-U01919-1Q.Seq.d
         (990 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01919-1 (Contig-U01919-1Q) /CSM_Contig/Conti...   809  0.0
Contig-U13021-1 (Contig-U13021-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U10201-1 (Contig-U10201-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U10110-1 (Contig-U10110-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U13927-1 (Contig-U13927-1Q) /CSM_Contig/Conti...    36  0.070
Contig-U11052-1 (Contig-U11052-1Q) /CSM_Contig/Conti...    36  0.070
Contig-U14674-1 (Contig-U14674-1Q) /CSM_Contig/Conti...    34  0.28
Contig-U13402-1 (Contig-U13402-1Q) /CSM_Contig/Conti...    34  0.28
Contig-U11622-1 (Contig-U11622-1Q) /CSM_Contig/Conti...    34  0.28
Contig-U07548-1 (Contig-U07548-1Q) /CSM_Contig/Conti...    34  0.28

>Contig-U01919-1 (Contig-U01919-1Q) /CSM_Contig/Contig-U01919-1Q.Seq.d
          Length = 990

 Score =  809 bits (408), Expect = 0.0
 Identities = 438/438 (100%)
 Strand = Plus / Plus

                                                                       
Query: 252 gatcaagttaataaataattattaaagaataatatataatnnnnnnnnnngctgatattc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gatcaagttaataaataattattaaagaataatatataatnnnnnnnnnngctgatattc 311

                                                                       
Query: 312 tttatggtttaattcatgcaagatatattttgacaccaaaaggtcttgcacatatgcacg 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttatggtttaattcatgcaagatatattttgacaccaaaaggtcttgcacatatgcacg 371

                                                                       
Query: 372 aaaaatttaaaaaagcagagtttggcagatgtccacgtgttttttgtcaaaatcaaccag 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaaaatttaaaaaagcagagtttggcagatgtccacgtgttttttgtcaaaatcaaccag 431

                                                                       
Query: 432 tccttccagtaggtttagcagatatgcaaggtgttgatacagttaaagtctattgcccaa 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tccttccagtaggtttagcagatatgcaaggtgttgatacagttaaagtctattgcccaa 491

                                                                       
Query: 492 gatgcaatgacatttttaatccaaaatacagaagacattcacatattgatggtgcttatt 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gatgcaatgacatttttaatccaaaatacagaagacattcacatattgatggtgcttatt 551

                                                                       
Query: 552 tcggtaccacttttccacatcttttattaattacttaccctgaattaattccaaccaaac 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tcggtaccacttttccacatcttttattaattacttaccctgaattaattccaaccaaac 611

                                                                       
Query: 612 caccacaacaatatattcctgaaatatatggtttcaaaattcataaatctgcaagagaac 671
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 caccacaacaatatattcctgaaatatatggtttcaaaattcataaatctgcaagagaac 671

                             
Query: 672 gtcaacttcaaattcaac 689
           ||||||||||||||||||
Sbjct: 672 gtcaacttcaaattcaac 689


 Score =  186 bits (94), Expect = 3e-47
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 897 ccaacgacttgatggatagtgtttttaaaatacacattcaacaacctccaagtatgtgat 956
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ccaacgacttgatggatagtgtttttaaaatacacattcaacaacctccaagtatgtgat 956

                                             
Query: 957 aacgtaattaataaaactaaataaactttttatt 990
           ||||||||||||||||||||||||||||||||||
Sbjct: 957 aacgtaattaataaaactaaataaactttttatt 990


 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 1  acacagtattgcaattactagcaggcaaaaacgttaacg 39
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  acacagtattgcaattactagcaggcaaaaacgttaacg 39


 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 120 ctttggtgaatctgtgtgtatatagannnnnnnnagctttcaaaaccatatagtaatatt 179
           ||||||||||||||||||||||||||        ||||||||||||||||||||||||||
Sbjct: 120 ctttggtgaatctgtgtgtatatagattttttttagctttcaaaaccatatagtaatatt 179


 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 851 ttgaattcaaataaatt 867
           |||||||||||||||||
Sbjct: 851 ttgaattcaaataaatt 867


>Contig-U13021-1 (Contig-U13021-1Q) /CSM_Contig/Contig-U13021-1Q.Seq.d
          Length = 4777

 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 259  ttaataaataattattaaa 277
            |||||||||||||||||||
Sbjct: 4675 ttaataaataattattaaa 4693


 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 609  aaccaccacaacaata 624
            ||||||||||||||||
Sbjct: 4634 aaccaccacaacaata 4649


>Contig-U10201-1 (Contig-U10201-1Q) /CSM_Contig/Contig-U10201-1Q.Seq.d
          Length = 1179

 Score = 38.2 bits (19), Expect = 0.018
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 263  taaataattattaaagaataata 285
            ||||||||||||||| |||||||
Sbjct: 1152 taaataattattaaataataata 1174


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,575
Number of Sequences: 6905
Number of extensions: 10575
Number of successful extensions: 1299
Number of sequences better than 10.0: 114
length of query: 990
length of database: 5,674,871
effective HSP length: 16
effective length of query: 974
effective length of database: 5,564,391
effective search space: 5419716834
effective search space used: 5419716834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.10
Homology vs DNA 
Query= Contig-U01919-1 (Contig-U01919-1Q) /CSM_Contig/Contig-U01919-1Q.Seq.d
         (990 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C94455) Dictyostelium discoideum slug cDNA, clone SSK824.        745   0.0    1
(AU261333) Dictyostelium discoideum vegetative cDNA clone:VS...   186   1e-42  1
(AU074473) Dictyostelium discoideum slug cDNA, clone SSK824.       52   3e-24  4
(DT587099) wmi03-3ms2-b06 Wmi03 Welwitschia mirabilis cDNA c...    62   1e-05  2
(C84763) Dictyostelium discoideum slug cDNA, clone SSF550.         62   4e-05  1
(FM983368) Glossina morsitans morsitans EST, clone GMsg161c0...    42   1e-04  3
(FM984920) Glossina morsitans morsitans EST, clone GMsg156b0...    42   1e-04  3
(DV606929) EST1209925 Glossina morsitans morsitans Fat body ...    42   1e-04  3
(FM980733) Glossina morsitans morsitans EST, clone GMsg156b0...    42   1e-04  3
(CU429892) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    54   0.011  1
(CU428862) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    54   0.011  1
(BW639810) Dugesia ryukyuensis mRNA, clone: Dr_sW_016_B21, 5...    36   0.016  3
(BW635081) Dugesia ryukyuensis mRNA, clone: Dr_sW_001_E08, 5...    36   0.021  3
(BW637460) Dugesia ryukyuensis mRNA, clone: Dr_sW_008_J04, 5...    36   0.021  3
(BW641491) Dugesia ryukyuensis mRNA, clone: Dr_sW_021_H03, 5...    36   0.029  3
(BQ087563) Cri-9_M21_SP6 Ceratopteris Spore Library Ceratopt...    44   0.035  2
(CZ289367) cp63f12.f Candida parapsilosis Random Genomic Lib...    52   0.042  1
(AM726636) Cucumis melo subsp. melo EST, clone HS_13-C12-M13R.     42   0.14   2
(AC215570) Procavia capensis clone CH280-136H9, WORKING DRAF...    50   0.16   1
(FC456131) CBAX9768.fwd CBAX Physcomitrella patens subsp. pa...    50   0.16   1
(FC382581) CAYZ13898.rev CAYZ Physcomitrella patens subsp. p...    50   0.16   1
(GD162224) OXBA-aaa10f02.g1 Oxytricha_pSMART_OXBA Sterkiella...    42   0.42   2
(GE318173) OXBA-aaa27h03.g1 Oxytricha_pSMART_OXBA Sterkiella...    42   0.44   2
(AG682617) Macaca fuscata fuscata DNA, clone: MSB2-112D23_F,...    34   0.47   2
(EH746414) CNMS5913.b1_B15.ab1 CNM(LMS) spotted knapweed Cen...    48   0.65   1
(EY116363) CAZI9843.rev CAZI Artemisia annua normalized leaf...    48   0.65   1
(EY102282) CAZI25687.rev CAZI Artemisia annua normalized lea...    48   0.65   1
(EY038220) CAIY3729.fwd CAIY Artemisia annua leaf Artemisia ...    48   0.65   1
(EY038219) CAIY3729.rev CAIY Artemisia annua leaf Artemisia ...    48   0.65   1
(ER789489) PPTGC47TF Solanum tuberosum RHPOTKEY BAC ends Sol...    36   0.94   3
(BI746344) rm26a01.y1 Meloidogyne arenaria egg pAMP1 v1 Chia...    40   1.0    2
(AM429436) Vitis vinifera contig VV78X265574.4, whole genome...    46   2.6    1
(GM887650) Sequence 117 from Patent WO2008137089.                  46   2.6    1
(AL356605) Human DNA sequence from clone RP11-414G18 on chro...    46   2.6    1
(AC165388) Oryctolagus cuniculus clone LB1-171C10, WORKING D...    46   2.6    1
(AY814453) Schistosoma japonicum SJCHGC01504 protein mRNA, c...    46   2.6    1
(AY811451) Schistosoma japonicum clone SJCHGC01503 unknown m...    46   2.6    1
(EI411569) E02_hs6-125002901_PTro_040518.r Pan troglodytes N...    46   2.6    1
(EI411567) E02_hs6-125002901_PPan_040512.r Pan paniscus NG05...    46   2.6    1
(EI411565) E02_hs6-125002901_GGor_040504.r Gorilla gorilla N...    46   2.6    1
(EH699913) CCIS12125.b1_I08.ab1 CCI(LMS) chicory Cichorium i...    46   2.6    1
(EE630483) CHEL1836.b1_H04.ab1 CHE(LMS) serpentine sunflower...    46   2.6    1
(DY921576) CHAY4885.b1_I22.ab1 CHA(XYZ) common wild sunflowe...    46   2.6    1
(BU721258) SJM2BVD04 SJM Schistosoma japonicum cDNA similar ...    46   2.6    1
(BU721257) SJM2BVD03 SJM Schistosoma japonicum cDNA similar ...    46   2.6    1
(BU718557) SJM2CKG02 SJM Schistosoma japonicum cDNA similar ...    46   2.6    1
(GE512221) CCFT8378.g1_D08.ab1 CCF(STU) sunflower Helianthus...    46   2.6    1
(GE509632) CCFT7140.g1_G10.ab1 CCF(STU) sunflower Helianthus...    46   2.6    1
(GE502256) CCFT3212.g1_H11.ab1 CCF(STU) sunflower Helianthus...    46   2.6    1
(AB164443) Pseudasphondylia matatabi mitochondrial gene for ...    38   3.9    2
(BW636461) Dugesia ryukyuensis mRNA, clone: Dr_sW_005_I13, 5...    36   4.2    2
(BX568827) Glossina morsitans morsitans (Tseatse fly) EST fr...    42   5.1    2
(CT855105) Oryza sativa Indica Group EST sequence:OSIGCRN106...    34   6.5    2
(FF084994) CPAD-aaa96h07.b1 PB2801_EST_CPAD1 Caenorhabditis ...    38   6.8    2
(DY890274) CeleSEQ8823 Cunninghamella elegans pBluescript (E...    40   8.7    2

>(C94455) Dictyostelium discoideum slug cDNA, clone SSK824.
          Length = 570

 Score =  745 bits (376), Expect = 0.0
 Identities = 376/376 (100%)
 Strand = Plus / Plus


Query: 303 ctgatattctttatggtttaattcatgcaagatatattttgacaccaaaaggtcttgcac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   ctgatattctttatggtttaattcatgcaagatatattttgacaccaaaaggtcttgcac 61


Query: 363 atatgcacgaaaaatttaaaaaagcagagtttggcagatgtccacgtgttttttgtcaaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  atatgcacgaaaaatttaaaaaagcagagtttggcagatgtccacgtgttttttgtcaaa 121


Query: 423 atcaaccagtccttccagtaggtttagcagatatgcaaggtgttgatacagttaaagtct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atcaaccagtccttccagtaggtttagcagatatgcaaggtgttgatacagttaaagtct 181


Query: 483 attgcccaagatgcaatgacatttttaatccaaaatacagaagacattcacatattgatg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 attgcccaagatgcaatgacatttttaatccaaaatacagaagacattcacatattgatg 241


Query: 543 gtgcttatttcggtaccacttttccacatcttttattaattacttaccctgaattaattc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtgcttatttcggtaccacttttccacatcttttattaattacttaccctgaattaattc 301


Query: 603 caaccaaaccaccacaacaatatattcctgaaatatatggtttcaaaattcataaatctg 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caaccaaaccaccacaacaatatattcctgaaatatatggtttcaaaattcataaatctg 361


Query: 663 caagagaacgtcaact 678
           ||||||||||||||||
Sbjct: 362 caagagaacgtcaact 377

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 747,341,029
Number of extensions: 47437155
Number of successful extensions: 3986599
Number of sequences better than 10.0: 55
Length of query: 990
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 966
Effective length of database: 99,340,224,878
Effective search space: 95962657232148
Effective search space used: 95962657232148
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01919-1 (Contig-U01919-1Q) /CSM_Contig/Contig-U01919-1Q.Seq.d
         (990 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S14725(S14725;S14478) casein kinase II (EC 2.7.1.-) beta chain -...   172   1e-41
M30448_1(M30448|pid:none) Human casein kinase II beta subunit mR...   172   1e-41
BT080387_1(BT080387|pid:none) Caligus clemensi clone ccle-evs-51...   172   1e-41
AY894042_1(AY894042|pid:none) Synthetic construct Homo sapiens c...   172   1e-41
A25828(A25828)casein kinase II (EC 2.7.1.-) beta chain - bovine       172   1e-41
CR762325_1(CR762325|pid:none) Xenopus tropicalis finished cDNA, ...   172   1e-41
AC084763_21(AC084763|pid:none) Oryza sativa chromosome 10 BAC OS...   172   2e-41
AK111555_1(AK111555|pid:none) Oryza sativa Japonica Group cDNA c...   172   2e-41
AC146572_22(AC146572|pid:none) Medicago truncatula clone mth2-10...   171   4e-41
EF677833_1(EF677833|pid:none) Picea sitchensis clone WS02775_N13...   169   1e-40
AK121850_1(AK121850|pid:none) Oryza sativa Japonica Group cDNA c...   169   1e-40
(P08182) RecName: Full=Casein kinase II subunit beta;          S...   169   2e-40
AE014298_1759(AE014298|pid:none) Drosophila melanogaster chromos...   169   2e-40
T24317(T24317;T24320;A41036;B41036) casein kinase II (EC 2.7.1.-...   168   2e-40
AJ438265_1(AJ438265|pid:none) Nicotiana tabacum mRNA for protein...   167   7e-40
AF239816_1(AF239816|pid:none) Zea mays protein kinase CK2 regula...   166   9e-40
EU961805_1(EU961805|pid:none) Zea mays clone 238321 casein kinas...   166   9e-40
EU964087_1(EU964087|pid:none) Zea mays clone 275781 casein kinas...   166   1e-39
(O76485) RecName: Full=Casein kinase II subunit beta;          S...   166   1e-39
CR382125_952(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   166   1e-39
BT052226_1(BT052226|pid:none) Medicago truncatula clone MTYF9_FA...   165   2e-39
CU928175_468(CU928175|pid:none) Zygosaccharomyces rouxii strain ...   165   3e-39
EF554578_1(EF554578|pid:none) Danaus plexippus casein kinase II ...   164   3e-39
X74274_1(X74274|pid:none) S.pombe mRNA for casein kinase II beta...   164   4e-39
(O81275) RecName: Full=Casein kinase II subunit beta-3;         ...   164   4e-39
EU964785_1(EU964785|pid:none) Zea mays clone 281518 casein kinas...   164   6e-39
BT065896_1(BT065896|pid:none) Zea mays full-length cDNA clone ZM...   164   6e-39
AJ488194_1(AJ488194|pid:none) Nicotiana tabacum mRNA for protein...   163   7e-39
AB210337_1(AB210337|pid:none) Ciona intestinalis mRNA for casein...   163   1e-38
BT086035_1(BT086035|pid:none) Zea mays full-length cDNA clone ZM...   163   1e-38
BT043021_1(BT043021|pid:none) Zea mays full-length cDNA clone ZM...   162   2e-38
AC183498_28(AC183498|pid:none) Brassica oleracea, *** SEQUENCING...   162   2e-38
(P40228) RecName: Full=Casein kinase II subunit beta;          S...   162   2e-38
AF239817_1(AF239817|pid:none) Zea mays protein kinase CK2 regula...   161   3e-38
(O80507) RecName: Full=Putative casein kinase II subunit beta-4;...   161   4e-38
AE016816_291(AE016816|pid:none) Ashbya gossypii (= Eremothecium ...   159   1e-37
(O96863) RecName: Full=Casein kinase II subunit beta';          ...   159   1e-37
(P40229) RecName: Full=Casein kinase II subunit beta';          ...   158   3e-37
AB162350_7(AB162350|pid:none) Drosophila simulans genes, CG10444...   158   3e-37
FN315918_1(FN315918|pid:none) Schistosoma japonicum isolate Anhu...   158   3e-37
AY223440_1(AY223440|pid:none) Schistosoma japonicum clone ZZZ444...   157   7e-37
EF146625_1(EF146625|pid:none) Populus trichocarpa clone WS01210_...   156   9e-37
FN357340_58(FN357340|pid:none) Schistosoma mansoni genome sequen...   155   3e-36
AY813927_1(AY813927|pid:none) Schistosoma japonicum SJCHGC01319 ...   154   6e-36
CP001574_466(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   153   1e-35
AY223129_1(AY223129|pid:none) Schistosoma japonicum clone ZZD143...   152   2e-35
FN314741_1(FN314741|pid:none) Schistosoma japonicum isolate Anhu...   151   3e-35
AY172319_1(AY172319|pid:none) Candida albicans casein kinase 2 b...   149   1e-34
FM992692_255(FM992692|pid:none) Candida dubliniensis CD36 chromo...   148   2e-34
AM502254_566(AM502254|pid:none) Leishmania infantum chromosome 36.    144   5e-33
CT005272_526(CT005272|pid:none) Leishmania major strain Friedlin...   144   5e-33
(Q24536) RecName: Full=Suppressor-of-stellate-like protein;     ...   142   2e-32
L42285_1(L42285|pid:none) Drosophila melanogaster (clone pBS911)...   140   7e-32
CR940348_374(CR940348|pid:none) Theileria annulata strain Ankara...   137   7e-31
CR932174_1(CR932174|pid:none) Paramecium tetraurelia macronuclea...   123   9e-27
FM992689_27(FM992689|pid:none) Candida dubliniensis CD36 chromos...   122   1e-26
(O59906) RecName: Full=Casein kinase II subunit beta;          S...   122   1e-26
CR382133_281(CR382133|pid:none) Debaryomyces hansenii strain CBS...   122   2e-26
FN392322_419(FN392322|pid:none) Pichia pastoris GS115 chromosome...   122   2e-26
(O94281) RecName: Full=Probable casein kinase II subunit beta-2;...   122   2e-26
AM910991_9(AM910991|pid:none) Plasmodium knowlesi strain H chrom...   121   3e-26
CR932175_1(CR932175|pid:none) Paramecium tetraurelia macronuclea...   121   4e-26
AE014186_34(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...   119   2e-25
CR382121_198(CR382121|pid:none) Kluyveromyces lactis strain NRRL...   119   2e-25
(P43639) RecName: Full=Casein kinase II subunit beta;          S...   114   4e-24
CU928169_315(CU928169|pid:none) Kluyveromyces thermotolerans str...   114   4e-24
BT080898_1(BT080898|pid:none) Caligus clemensi clone ccle-evs-50...   114   4e-24
AM270064_1(AM270064|pid:none) Aspergillus niger contig An04c0030...   112   3e-23
AP007157_868(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   112   3e-23
(Q8TG12) RecName: Full=Casein kinase II subunit beta-1;         ...   109   1e-22
AM910994_120(AM910994|pid:none) Plasmodium knowlesi strain H chr...   102   3e-20
AL844509_412(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...   101   3e-20
(Q7KV15) RecName: Full=Stellate protein CG33239/CG33241;  &AE014...    99   2e-19
(Q7KV13) RecName: Full=Stellate protein CG33237;  &AE014298_2082...    99   2e-19
S24397(S24397;S08120) stellate protein - fruit fly (Drosophila m...    99   2e-19
(Q7KV19) RecName: Full=Stellate protein CG33243;  &AE014298_2076...    99   3e-19
(Q7KV22) RecName: Full=Stellate protein CG33246;  &AE014298_2073...    98   4e-19
S24398(S24398)stellate protein - fruit fly (Drosophila melanogas...    98   4e-19
(Q9NIV2) RecName: Full=Stellate orphon protein at 12D;  &AE01429...    98   4e-19
AY118877_1(AY118877|pid:none) Drosophila melanogaster GM31840 fu...    80   1e-13
AJ301368_1(AJ301368|pid:none) Sus scrofa partial mRNA for casein...    65   4e-09
AF236850_1(AF236850|pid:none) Drosophila melanogaster casein kin...    55   4e-06
AY814453_1(AY814453|pid:none) Schistosoma japonicum SJCHGC01504 ...    50   2e-04
AL805934_38(AL805934|pid:none) Human DNA sequence from clone DAQ...    44   0.007
AL670886_29(AL670886|pid:none) Human DNA sequence from clone XXb...    44   0.007
AF236852_1(AF236852|pid:none) Drosophila melanogaster casein kin...    40   0.095
BT038495_1(BT038495|pid:none) Zea mays full-length cDNA clone ZM...    39   0.21
AJ301369_1(AJ301369|pid:none) Sus scrofa partial mRNA for casein...    38   0.47
AM920431_562(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    34   6.8
CP001124_2805(CP001124|pid:none) Geobacter bemidjiensis Bem, com...    34   8.9

>S14725(S14725;S14478) casein kinase II (EC 2.7.1.-) beta chain -
           pig (fragment)  &X56503_1(X56503|pid:none)
          Length = 196

 Score =  172 bits (437), Expect = 1e-41
 Identities = 72/126 (57%), Positives = 98/126 (77%)
 Frame = +2

Query: 302 ADILYGLIHARYILTPKGLAHMHEKFKKAEFGRCPRVFCQNQPVLPVGLADMQGVDTVKV 481
           A++LYGLIHARYILT +G+A M EK+++ +FG CPRV+C+NQP+LP+GL+D+ G   VK+
Sbjct: 57  AEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKL 116

Query: 482 YCPRCNDIFNPKYRRHSHIDGAYFGTTFPHLLLITYPELIPTKPPQQYIPEIYGFKIHKS 661
           YCP+C D++ PK  RH H DGAYFGT FPH+L + +PE  P +P  Q++P +YGFKIH
Sbjct: 117 YCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPM 176

Query: 662 ARERQL 679
           A + QL
Sbjct: 177 AYQLQL 182

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,127,573,159
Number of extensions: 19249176
Number of successful extensions: 39726
Number of sequences better than 10.0: 90
Number of HSP's gapped: 39691
Number of HSP's successfully gapped: 91
Length of query: 330
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 201
Effective length of database: 633,664,753
Effective search space: 127366615353
Effective search space used: 127366615353
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.87  gvh: 0.40  alm: 0.45  top: 0.50  tms: 0.00  mit: 0.26  mip: 0.04
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U01919-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0