Contig-U12288-1 |
Contig ID |
Contig-U12288-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1037 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
7097070 |
End point |
7098108 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
5 |
Number of EST |
6 |
Link to clone list |
U12288 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.30 |
Homology vs DNA |
Query= Contig-U12288-1 (Contig-U12288-1Q) /CSM_Contig/Contig-U12288-1Q.Seq.d (1047 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ437597) Dictyostelium discoideum cDNA clone:ddv34b23, 3' ... 1304 0.0 2 (BJ443018) Dictyostelium discoideum cDNA clone:ddv51l17, 3' ... 686 0.0 4 (BJ437330) Dictyostelium discoideum cDNA clone:ddv33m23, 3' ... 686 0.0 4 (BJ446203) Dictyostelium discoideum cDNA clone:ddv62a06, 3' ... 678 0.0 4 (BJ430001) Dictyostelium discoideum cDNA clone:ddv5o15, 3' e... 686 0.0 2 (BJ411759) Dictyostelium discoideum cDNA clone:ddv5o15, 5' e... 519 e-143 1 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 54 3e-19 10 (BJ443423) Dictyostelium discoideum cDNA clone:ddv52j23, 3' ... 46 6e-07 3 (BJ446691) Dictyostelium discoideum cDNA clone:ddv63d18, 3' ... 36 7e-04 3 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.003 11 (AE017308) Mycoplasma mobile 163K complete genome. 38 0.009 16 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.012 16 (AC215840) Populus trichocarpa clone POP043-C12, complete se... 36 0.014 11 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.090 14 (EK172644) 1095458082358 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.094 3 (AM456051) Vitis vinifera contig VV78X259841.7, whole genome... 38 0.13 5 (AJ430522) Dictyostelium discoideum partial pfk gene for ATP... 50 0.17 1 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 50 0.17 1 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 0.18 17 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 0.18 21 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 0.19 8 (AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 0.37 11 (CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 40 0.39 15 (CJ361610) Molgula tectiformis cDNA, cleaving embryo clone:m... 42 0.54 2 (CJ351170) Molgula tectiformis cDNA, cleaving embryo clone:m... 42 0.57 2 (CJ358954) Molgula tectiformis cDNA, cleaving embryo clone:m... 42 0.59 2 (AC090062) Homo sapiens chromosome 5 clone CTB-160P13, WORKI... 38 0.61 5 (EK459700) 1095468990240 Global-Ocean-Sampling_GS-32-01-01-1... 46 0.67 2 (EU025714) Salmo salar retinoic acid receptor gamma a (Rarga... 48 0.67 1 (CT030156) Mouse DNA sequence from clone RP23-191J8 on chrom... 48 0.67 1 (AC154834) Mus musculus BAC clone RP24-573L8 from chromosome... 48 0.67 1 (AC141483) Mus musculus BAC clone RP23-58E17 from chromosome... 48 0.67 1 (AC135291) Mus musculus BAC clone RP23-69G18 from chromosome... 48 0.67 1 (AC122745) Mus musculus chromosome 18, clone RP23-133M21, co... 48 0.67 1 (AC118734) Mus musculus chromosome 18, clone RP24-170D17, co... 48 0.67 1 (AC186058) Canis familiaris chromosome 14, clone XX-166M13, ... 48 0.67 1 (EK227657) 1095460164258 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.67 1 (BP873814) Apis mellifera mRNA, clone: p27E06_E06_10.ab1. 48 0.67 1 (BP873811) Apis mellifera mRNA, clone: p27E03_E03_09.ab1. 48 0.67 1 (BP873810) Apis mellifera mRNA, clone: p27E02_E02_10.ab1. 48 0.67 1 (EJ267019) 1095351022231 Global-Ocean-Sampling_GS-27-01-01-1... 30 0.78 4 (CT737136) Zebrafish DNA sequence from clone DKEYP-12B1 in l... 38 1.2 8 (AC096506) Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cance... 42 1.2 2 (CP000882) Hemiselmis andersenii chromosome 2, complete sequ... 38 1.2 8 (CK841774) UI-R-BJ0p-ain-b-03-0-UI.s10 UI-R-BJ0p Rattus norv... 36 1.3 2 (AC134185) Rattus norvegicus clone CH230-119J16, WORKING DRA... 34 1.3 2 (AC097903) Rattus norvegicus clone CH230-146J6, *** SEQUENCI... 34 1.4 2 (AC168700) Strongylocentrotus purpuratus clone R3-3014D17, W... 42 1.4 7 (BE117631) UI-R-BS1-aze-b-01-0-UI.s1 UI-R-BS1 Rattus norvegi... 36 1.5 2 (AC146095) Pan troglodytes BAC clone RP43-48M24 from chromos... 40 1.5 4 (BP491960) Rattus norvegicus mRNA, clone:RI09494, 3' end, ex... 36 1.6 2 (AC020732) Homo sapiens BAC clone RP11-556H16 from X, comple... 42 1.7 2 (CT573504) Medicago truncatula chromosome 5 clone mth2-178o1... 40 1.7 8 (AZ680276) ENTJX31TR Entamoeba histolytica Sheared DNA Entam... 36 1.8 2 (BH151300) ENTPV70TR Entamoeba histolytica Sheared DNA Entam... 36 1.8 2 (AZ539954) ENTFP64TF Entamoeba histolytica Sheared DNA Entam... 36 1.8 2 (AF399011) Pseudomonas phage phiKZ, complete genome. 36 1.9 9 (AC173837) Strongylocentrotus purpuratus clone R3-3006C23, W... 42 2.6 5 (AP004087) Oryza sativa Japonica Group genomic DNA, chromoso... 38 2.6 6 (AM457644) Vitis vinifera contig VV78X053933.4, whole genome... 46 2.7 1 (AP004714) Homo sapiens genomic DNA, chromosome 8q23, clone:... 46 2.7 1 (AP001572) Homo sapiens genomic DNA, chromosome 8q23, clone:... 46 2.7 1 (AC025836) Homo sapiens chromosome 8, clone RP11-188I6, comp... 46 2.7 1 (AC012642) Homo sapiens chromosome 5 clone CTD-2287K1, compl... 46 2.7 1 (AC184968) Bos taurus clone CH240-115N19, WORKING DRAFT SEQU... 46 2.7 1 (AC173945) Callicebus moloch clone LB5-27E14, WORKING DRAFT ... 46 2.7 1 (AC168876) Bos taurus clone CH240-207L13, WORKING DRAFT SEQU... 46 2.7 1 (AC019138) Homo sapiens chromosome 5 clone RP11-637B14, WORK... 46 2.7 1 (AZ521919) 200PbA09 Pb MBN #21 Plasmodium berghei genomic 3'... 46 2.7 1 (FH615514) CHO_OF4535xj12r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.7 1 (FH615042) CHO_OF4535xi11r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.7 1 (FH414270) CHO_OF4867xc19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.7 1 (ER417606) 1092963680230 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.7 1 (EJ674500) 1092955072451 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.7 1 (EJ657984) 1092955013226 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.7 1 (BX555403) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.7 1 (FC698933) CAXX7348.fwd CAXX Lottia gigantea from male gonad... 46 2.7 1 (EJ657514) 1092955011634 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.7 2 (DV728236) RVL20849 Wackym-Soares normalized rat vestibular ... 36 2.8 2 (AE017263) Mesoplasma florum L1 complete genome. 32 3.0 15 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 3.2 19 (E06069) Autonomously Replicating Sequence(ARS) of pLLE1. 36 3.2 3 (X51832) Lentinus edodes mitochondrial linear plasmid DNA co... 36 3.2 3 (EK046455) 1092959554007 Global-Ocean-Sampling_GS-31-01-01-1... 32 3.3 3 (AM445803) Vitis vinifera, whole genome shotgun sequence, co... 32 3.4 5 (AC147877) Medicago truncatula clone mth2-9b13, complete seq... 34 3.4 8 (BJ352034) Dictyostelium discoideum cDNA clone:dda45m11, 3' ... 34 3.4 3 (AC210223) Macaca mulatta BAC CH250-362B18 (Children's Hosp... 40 3.6 5 (AC152637) Bos taurus clone CH240-16F17, WORKING DRAFT SEQUE... 38 3.8 7 (AC225471) Medicago truncatula clone mth2-176h19, WORKING DR... 36 3.9 8 (CD145140) MG1-0103U-A326-G11-U.B MG1-0103 Schistosoma manso... 40 4.0 2 (AA616080) vo92c03.r1 Barstead mouse irradiated colon MPLRB7... 34 4.0 2 (AE017245) Mycoplasma synoviae 53, complete genome. 36 4.2 17 (CT737344) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 4.3 6 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 32 4.4 2 (AP009890) Lotus japonicus genomic DNA, clone: LjT41D08, TM1... 32 4.6 6 (CK346701) L0905F11-3 NIA Mouse Newborn Kidney cDNA Library ... 34 4.6 2 (CA951267) it48f06.x1 Kaestner ngn3 - - Mus musculus cDNA cl... 34 4.6 2 (BB820681) Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDN... 34 4.6 2 (AC108895) Bos taurus clone RP42-88B14, WORKING DRAFT SEQUEN... 38 4.7 6
>(BJ437597) Dictyostelium discoideum cDNA clone:ddv34b23, 3' end, single read. Length = 746
Score = 1304 bits (658), Expect(2) = 0.0 Identities = 688/702 (98%) Strand = Plus / Minus
Query: 304 aaagcatcgggtggtacagatccaggtgtgtcaaatgtataaacttttatctgaaaaagt 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 746 aaagcatcgggtggtacagatccaggtgtgtcaaatgtataaacttttatctgaaaaagt 687
Query: 364 tgttaaaaactatattgtcgtggttaccgatgaagaggaaaatggatataaacatggtag 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 686 tgttaaaaactatattgtcgtggttaccgatgaagaggaaaatggatataaacatggtag 627
Query: 424 atttagcgagttgttcattcaatatcgtaaagaggttgcaccaaattgtaaattagtttt 483 |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 626 atttagcgagttgttcattcaatatcgtaaagaggttgcaccnaattgtaaantagtttt 567
Query: 484 catttcattcattcctcaatactctgaaggtcaaatggtcggtgagttacgtagaaaagg 543 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 566 catttcattcattcctcaatactctgaaggtcnaatggtcggtgagttacgtagaaaagg 507
Query: 544 tttcgattcttcaactttaattcaaattcctttcgatgcaacaaatcctgatgtttcaca 603 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 506 tttcgattcttcaactttaattcanattcctttcgatgcaacaaatcctgatgtttcaca 447
Query: 604 aaatcgatggtatgctttcaagcttatcttgtgaatctgaacaattcaaagatcaattgg 663 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 446 aaatcgatggtatgctttcaagcttatcttgtgaatntgaacaattcaaagatcaattgg 387
Query: 664 acctccttgttactattctttcaacagttggttataaaaatggttttaaattcattaatg 723 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 386 acctccttgttactattctttcaacagttggttataanaatggttttaaattcattaatg 327
Query: 724 atagagcacctctcttaatgagattcgatttaaatattcaattaggtattgaaaatgttt 783 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct: 326 atagagcacctctcttaatgagattcgatttaaatattcaattaggtatngnaaatgttt 267
Query: 784 tatctattattaaaactaatccaactttagataactatcaatatttaatggttaaaaata 843 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 266 tatctattattaaaactaatccaactttagatnactatcaatatttaatggttaagaata 207
Query: 844 atttaaatcgtttacttaaaatctctaaagataataatgatttggtttctcttgaaactt 903 |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 206 atttnaatcgtnnacttaaaatctctaaagataataatgatttggtttctcttgaagctt 147
Query: 904 ttaataatattcataaagaattttcaaaattatcaaaagatgatggtatctcagatatct 963 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 ttaataatattcataaagaattttcaaaattatcaaaagatgatggtatctcagatatct 87
Query: 964 tttaaaatctttatcaaatttgcaaccaatttctgttaaaga 1005 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 tttaaaatctttatcaaatttgcaaccaatttctgttaaaga 45
Score = 28.2 bits (14), Expect(2) = 0.0 Identities = 14/14 (100%) Strand = Plus / Minus
Query: 1007 attaaacaattaac 1020 |||||||||||||| Sbjct: 42 attaaacaattaac 29
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,303,443,674 Number of extensions: 81130971 Number of successful extensions: 6975112 Number of sequences better than 10.0: 145 Length of query: 1047 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1023 Effective length of database: 97,308,875,965 Effective search space: 99546980112195 Effective search space used: 99546980112195 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 2 |
Homology vs Protein |
Query= Contig-U12288-1 (Contig-U12288-1Q) /CSM_Contig/Contig-U12288-1Q.Seq.d (1047 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AC115592_24(AC115592|pid:none) Dictyostelium discoideum chromoso... 127 5e-62 CP001277_510(CP001277|pid:none) Candidatus Hamiltonella defensa ... 40 0.18 CP000770_5(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, c... 38 0.67 AM989987_9(AM989987|pid:none) Zygosaccharomyces rouxii strain CB... 37 1.5 CP000517_1002(CP000517|pid:none) Lactobacillus helveticus DPC 45... 36 2.6 CP001091_1790(CP001091|pid:none) Actinobacillus pleuropneumoniae... 36 2.6 AY190951_6(AY190951|pid:none) Drosophila willistoni clone DWIF01... 35 3.3 AP008971_755(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 35 3.3 AF250284_266(AF250284|pid:none) Amsacta moorei entomopoxvirus, c... 35 4.4 CU469464_86(CU469464|pid:none) Candidatus Phytoplasma mali strai... 35 5.7 AE001362_117(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 35 5.7 AE015450_249(AE015450|pid:none) Mycoplasma gallisepticum strain ... 35 5.7 CP000721_1477(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 35 5.7 AE017245_466(AE017245|pid:none) Mycoplasma synoviae 53, complete... 35 5.7 CP000312_474(CP000312|pid:none) Clostridium perfringens SM101, c... 34 7.5 CP000382_431(CP000382|pid:none) Clostridium novyi NT, complete g... 34 7.5 CP000382_680(CP000382|pid:none) Clostridium novyi NT, complete g... 34 9.7 CP000123_605(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 34 9.7
>AC115592_24(AC115592|pid:none) Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. Length = 1982
Score = 127 bits (320), Expect(3) = 5e-62 Identities = 71/127 (55%), Positives = 89/127 (70%), Gaps = 3/127 (2%) Frame = +3
Query: 603 KIDGMLSSLSCESEQFKDQLDLLVTILSTVGYKNGFKFINDRAPLLMRFDLNIQLGIENV 782 KIDG+LSSLSCESE FKDQLDL V IL VG K ++ I ++ LM F LNI+LGIENV Sbjct: 650 KIDGVLSSLSCESESFKDQLDLFVNILQCVGDKQLYQMIKEKKNRLMSFGLNIELGIENV 709
Query: 783 LSII---KTNPTLDNYQYLMVKNNLNRLLKISKDNNDLVSLETFNNIHKEFSKLSKDDGI 953 S++ KT P + N LM+KNNLNRL+KISKDN + + + F I K+F KL KD+GI Sbjct: 710 CSLLGNHKTTP-IGNMALLMIKNNLNRLIKISKDNKNEKAEQLFTKIQKDFIKLPKDEGI 768
Query: 954 SDIF*NL 974 +F +L Sbjct: 769 QFLFDSL 775
Score = 119 bits (298), Expect(3) = 5e-62 Identities = 57/89 (64%), Positives = 74/89 (83%) Frame = +2
Query: 338 MYKLLSEKVVKNYIVVVTDEEENGYKHGRFSELFIQYRKEVAPNCKLVFISFIPQYSEGQ 517 +Y L + K+VKNYIVVVTDEEEN +KHGRF++LFI+Y+KEVAPNCKLVF+SF+ +++GQ Sbjct: 565 LYPLYNNKIVKNYIVVVTDEEENSFKHGRFADLFIRYQKEVAPNCKLVFVSFLALHAKGQ 624
Query: 518 MVGELRRKGFDSSTLIQIPFDATNPDVSQ 604 MV ELR KG + IQI FD ++PDVS+ Sbjct: 625 MVTELRSKGIEP---IQILFDRSSPDVSK 650
Score = 36.6 bits (83), Expect(3) = 5e-62 Identities = 17/20 (85%), Positives = 17/20 (85%) Frame = +1
Query: 277 NLFKLKDLVKASGGTDPGVS 336 NLFKLKDLVKA GGTD VS Sbjct: 545 NLFKLKDLVKAGGGTDASVS 564
Score = 94.7 bits (234), Expect = 5e-18 Identities = 44/69 (63%), Positives = 49/69 (71%) Frame = +2
Query: 59 EIPWFLSVMFGGSAPVGTRVYEFEKELKDPSKFTKERAIELINQFKPTYAFLRKNLPESL 238 E+PWFLSVMFG A GT VYEFEK LK P FT E A ELI +FKPTY FLRKNLP + Sbjct: 344 EVPWFLSVMFGKPAEEGTHVYEFEKSLKTPGYFTNEVAFELIKKFKPTYPFLRKNLPSGI 403
Query: 239 FDGEMKAMV 265 D +MK + Sbjct: 404 LDNQMKRFI 412
Score = 73.2 bits (178), Expect(3) = 5e-18 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Frame = +2
Query: 338 MYKLLSEKVVKNYIVVVTDEEEN-GYKHGRFSELFIQYRKEVAPNCKLVFISFIPQYSEG 514 +Y L +K Y+V+VTDEEEN Y+ F +LF +Y EV+PNCKLVF+SF+ EG Sbjct: 1307 LYPLYEKKEKLEYLVIVTDEEENCNYRGYSFCQLFKKYLDEVSPNCKLVFVSFLDHQQEG 1366
Query: 515 QMVGELRRKGFDSSTLIQIPFDATNPDVSQ 604 MV EL+R + +Q D PDV++ Sbjct: 1367 NMVTELKRD--YNIHPLQFKLDKNKPDVTK 1394
Score = 39.7 bits (91), Expect(3) = 5e-18 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Frame = +3
Query: 603 KIDGMLSSLSCESEQFKDQLDLLVTILSTVGYKNGFKFINDRAPLLMRFDLNIQLGIENV 782 KID ML++LSC+S +F Q+D L ++ ++G N FK D+ + ++ L I ++ Sbjct: 1394 KIDNMLTTLSCQSNEFLIQIDCLNLLIDSIGISN-FKLFLDKFNSKLFYN---TLTILSL 1449
Query: 783 LSIIKTNPTLDNYQYL---MVKNNLNRLLKISKD 875 I+K +L++ L ++ +L+ +SK+ Sbjct: 1450 FFILKNYISLEDSSKLSTSKIQELYEKLINVSKE 1483
Score = 21.9 bits (45), Expect(3) = 5e-18 Identities = 7/16 (43%), Positives = 11/16 (68%) Frame = +1
Query: 280 LFKLKDLVKASGGTDP 327 +FK+ DL+ +G T P Sbjct: 1288 VFKVSDLISGTGATSP 1303
Score = 36.2 bits (82), Expect = 2.0 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%) Frame = +2
Query: 68 WFLSVMFGGSAPVGTRVYEFEK-ELKDPS-------KFTKERAI----ELINQFKPTYAF 211 WFL +FG P GT V F K E S K +E++I E++ +KP+Y+F Sbjct: 1079 WFLDAVFG-KIPRGTIVEAFSKFEFITCSVGNDLITKEDEEKSINTLKEILLTYKPSYSF 1137
Query: 212 LRKNLPESLFDGEMKAMVXXXXIFSN*KTWSKHRVVQIQVCQM--YKLLSEKVVKNYIVV 385 +RK + S +K ++ N W H + +V + Y+L E + ++Y V+ Sbjct: 1138 IRKTIDPSKIPDSLKLIIAQYEDI-NTVLWWYHELCCFEVDNLLSYRLHKETLTQSYGVL 1196
Query: 386 V 388 + Sbjct: 1197 L 1197
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 1,555,989,349 Number of extensions: 28552842 Number of successful extensions: 75651 Number of sequences better than 10.0: 18 Number of HSP's gapped: 75584 Number of HSP's successfully gapped: 25 Length of query: 349 Length of database: 1,051,180,864 Length adjustment: 129 Effective length of query: 220 Effective length of database: 633,664,753 Effective search space: 139406245660 Effective search space used: 139406245660 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
4 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |