Contig-U12288-1
Contig ID Contig-U12288-1
Contig update 2002.12.18
Contig sequence
>Contig-U12288-1 (Contig-U12288-1Q) /CSM_Contig/Contig-U12288-1Q.Seq.d
GCTACTTGGCGTGAAATTGCCAGNACTGTTACATTTGGGTCCAAAAGATC
TTTGTGATGAAATTCCATGGTTCCTTAGTGTTATGTTTGGTGGAAGTGCT
CCAGTTGGTACACGTGTTTATGAATTTGAAAAGGAATTAAAAGATCCATC
AAAATTCACTAAAGAAAGAGCCATTGAATTGATTAACCAATTCAAACCAA
CCTATGCATTCCTTAGAAAGAATTTACCAGAATCATTATTCGATGGCGAA
ATGAAAGCAATGGTT----------GAATCTTTTCAAACTAAAAGACTTG
GTCAAAGCATCGGGTGGTACAGATCCAGGTGTGTCAAATGTATAAACTTT
TATCTGAAAAAGTTGTTAAAAACTATATTGTCGTGGTTACCGATGAAGAG
GAAAATGGATATAAACATGGTAGATTTAGCGAGTTGTTCATTCAATATCG
TAAAGAGGTTGCACCAAATTGTAAATTAGTTTTCATTTCATTCATTCCTC
AATACTCTGAAGGTCAAATGGTCGGTGAGTTACGTAGAAAAGGTTTCGAT
TCTTCAACTTTAATTCAAATTCCTTTCGATGCAACAAATCCTGATGTTTC
ACAAAATCGATGGTATGCTTTCAAGCTTATCTTGTGAATCTGAACAATTC
AAAGATCAATTGGACCTCCTTGTTACTATTCTTTCAACAGTTGGTTATAA
AAATGGTTTTAAATTCATTAATGATAGAGCACCTCTCTTAATGAGATTCG
ATTTAAATATTCAATTAGGTATTGAAAATGTTTTATCTATTATTAAAACT
AATCCAACTTTAGATAACTATCAATATTTAATGGTTAAAAATAATTTAAA
TCGTTTACTTAAAATCTCTAAAGATAATAATGATTTGGTTTCTCTTGAAA
CTTTTAATAATATTCATAAAGAATTTTCAAAATTATCAAAAGATGATGGT
ATCTCAGATATCTTTTAAAATCTTTATCAAATTTGCAACCAATTTCTGTT
AAAGAAATTAAACAATTAACAAATAAAAAATAAAAAAAATAAACAAA

Gap gap included
Contig length 1037
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7097070
End point 7098108
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 6
Link to clone list U12288
List of clone(s)

est1=VFC164F,1,266
est2=VHB195Z,267,1030
est3=VHK370Z,267,1013
est4=VHP617Z,291,1040
est5=VHB789Z,295,1039
est6=VFC164Z,585,1037
Translated Amino Acid sequence
LLGVKLPXLLHLGPKDLCDEIPWFLSVMFGGSAPVGTRVYEFEKELKDPSKFTKERAIEL
INQFKPTYAFLRKNLPESLFDGEMKAMV---

---ESFQTKRLGQSIGWYRSRCVKCINFYLKKLLKTILSWLPMKRKMDINMVDLASCSFN
IVKRLHQIVN*fsfhsflntlkvkwsvsyvekvsilql*fkflsmqqilmfhkidgmlss
lsceseqfkdqldllvtilstvgykngfkfindrapllmrfdlniqlgienvlsiiktnp
tldnyqylmvknnlnrllkiskdnndlvsletfnnihkefsklskddgisdif*nlyqic
nqfllkklnn*qiknkknkq


Translated Amino Acid sequence (All Frames)
Frame A:
atwreiaxtvtfgskrsl**nsmvp*cyvwwkcsswytcl*i*kgikrsikih*rksh*i
d*piqtnlcip*keftriiirwrnesng---

---ESFQTKRLGQSIGWYRSRCVKCINFYLKKLLKTILSWLPMKRKMDINMVDLASCSFN
IVKRLHQIVN*fsfhsflntlkvkwsvsyvekvsilql*fkflsmqqilmfhkidgmlss
lsceseqfkdqldllvtilstvgykngfkfindrapllmrfdlniqlgienvlsiiktnp
tldnyqylmvknnlnrllkiskdnndlvsletfnnihkefsklskddgisdif*nlyqic
nqfllkklnn*qiknkknkq

Frame B:
LLGVKLPXLLHLGPKDLCDEIPWFLSVMFGGSAPVGTRVYEFEKELKDPSKFTKERAIEL
INQFKPTYAFLRKNLPESLFDGEMKAMV---

---nlfklkdlvkasggtdpgvsnv*tfi*ksc*klycrgyr*rgkwi*tw*i*rvvhsi
s*rgctkl*isfhfihssil*rsngr*vt*krfrffnfnsnsfrcnks*cftksmvcfqa
ylvnlnnskinwtslllffqqlvikmvlnslmiehls**dsi*ifn*vlkmfylllkliq
l*itini*wlkii*ivylkslkiimiwfllklliifiknfqnyqkmmvsqisfkifikfa
tnfc*rn*tink*kikkink

Frame C:
yla*ncqxcyiwvqkifvmkfhgslvlclvevlqlvhvfmnlkrn*kihqnslkkepln*
ltnsnqpmhsleriyqnhysmak*kqw---

---ifsn*ktwskhrvvqiqvcqmykllsekvvknyivvvtdeeengykhgrfselfiqy
rkevapncklvfisfipqysegqmvgelrrkgfdsstliqipfdatnpdvsqnrwyafkl
il*i*tiqrsigppcyysfnswl*kwf*ih***stslneirfkysiry*kcfiyy*n*sn
fr*lsifng*k*fksft*nl*r***fgfs*nf**ys*rifkiikr*wylryllkslsnlq
pisvkeikqltnkk*kk*t

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12288-1 (Contig-U12288-1Q)
/CSM_Contig/Contig-U12288-1Q.Seq.d
(1047 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12288-1 (Contig-U12288-1Q) /CSM_Contig/Conti... 1957 0.0
Contig-U12426-1 (Contig-U12426-1Q) /CSM_Contig/Conti... 46 8e-05
Contig-U11777-1 (Contig-U11777-1Q) /CSM_Contig/Conti... 38 0.019
Contig-U14873-1 (Contig-U14873-1Q) /CSM_Contig/Conti... 36 0.074
Contig-U14619-1 (Contig-U14619-1Q) /CSM_Contig/Conti... 36 0.074
Contig-U12949-1 (Contig-U12949-1Q) /CSM_Contig/Conti... 36 0.074
Contig-U12120-1 (Contig-U12120-1Q) /CSM_Contig/Conti... 36 0.074
Contig-U11942-1 (Contig-U11942-1Q) /CSM_Contig/Conti... 36 0.074
Contig-U11043-1 (Contig-U11043-1Q) /CSM_Contig/Conti... 36 0.074
Contig-U10935-1 (Contig-U10935-1Q) /CSM_Contig/Conti... 36 0.074

>Contig-U12288-1 (Contig-U12288-1Q) /CSM_Contig/Contig-U12288-1Q.Seq.d
Length = 1047

Score = 1957 bits (987), Expect = 0.0
Identities = 1020/1020 (100%)
Strand = Plus / Plus


Query: 1 gctacttggcgtgaaattgccagnactgttacatttgggtccaaaagatctttgtgatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctacttggcgtgaaattgccagnactgttacatttgggtccaaaagatctttgtgatga 60


Query: 61 aattccatggttccttagtgttatgtttggtggaagtgctccagttggtacacgtgttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattccatggttccttagtgttatgtttggtggaagtgctccagttggtacacgtgttta 120


Query: 121 tgaatttgaaaaggaattaaaagatccatcaaaattcactaaagaaagagccattgaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaatttgaaaaggaattaaaagatccatcaaaattcactaaagaaagagccattgaatt 180


Query: 181 gattaaccaattcaaaccaacctatgcattccttagaaagaatttaccagaatcattatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gattaaccaattcaaaccaacctatgcattccttagaaagaatttaccagaatcattatt 240


Query: 241 cgatggcgaaatgaaagcaatggttnnnnnnnnnngaatcttttcaaactaaaagacttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgatggcgaaatgaaagcaatggttnnnnnnnnnngaatcttttcaaactaaaagacttg 300


Query: 301 gtcaaagcatcgggtggtacagatccaggtgtgtcaaatgtataaacttttatctgaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcaaagcatcgggtggtacagatccaggtgtgtcaaatgtataaacttttatctgaaaa 360


Query: 361 agttgttaaaaactatattgtcgtggttaccgatgaagaggaaaatggatataaacatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agttgttaaaaactatattgtcgtggttaccgatgaagaggaaaatggatataaacatgg 420


Query: 421 tagatttagcgagttgttcattcaatatcgtaaagaggttgcaccaaattgtaaattagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagatttagcgagttgttcattcaatatcgtaaagaggttgcaccaaattgtaaattagt 480


Query: 481 tttcatttcattcattcctcaatactctgaaggtcaaatggtcggtgagttacgtagaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttcatttcattcattcctcaatactctgaaggtcaaatggtcggtgagttacgtagaaa 540


Query: 541 aggtttcgattcttcaactttaattcaaattcctttcgatgcaacaaatcctgatgtttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggtttcgattcttcaactttaattcaaattcctttcgatgcaacaaatcctgatgtttc 600


Query: 601 acaaaatcgatggtatgctttcaagcttatcttgtgaatctgaacaattcaaagatcaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acaaaatcgatggtatgctttcaagcttatcttgtgaatctgaacaattcaaagatcaat 660


Query: 661 tggacctccttgttactattctttcaacagttggttataaaaatggttttaaattcatta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tggacctccttgttactattctttcaacagttggttataaaaatggttttaaattcatta 720


Query: 721 atgatagagcacctctcttaatgagattcgatttaaatattcaattaggtattgaaaatg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atgatagagcacctctcttaatgagattcgatttaaatattcaattaggtattgaaaatg 780


Query: 781 ttttatctattattaaaactaatccaactttagataactatcaatatttaatggttaaaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttttatctattattaaaactaatccaactttagataactatcaatatttaatggttaaaa 840


Query: 841 ataatttaaatcgtttacttaaaatctctaaagataataatgatttggtttctcttgaaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ataatttaaatcgtttacttaaaatctctaaagataataatgatttggtttctcttgaaa 900


Query: 901 cttttaataatattcataaagaattttcaaaattatcaaaagatgatggtatctcagata 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cttttaataatattcataaagaattttcaaaattatcaaaagatgatggtatctcagata 960


Query: 961 tcttttaaaatctttatcaaatttgcaaccaatttctgttaaagaaattaaacaattaac 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tcttttaaaatctttatcaaatttgcaaccaatttctgttaaagaaattaaacaattaac 1020


>Contig-U12426-1 (Contig-U12426-1Q) /CSM_Contig/Contig-U12426-1Q.Seq.d
Length = 1761

Score = 46.1 bits (23), Expect = 8e-05
Identities = 44/51 (86%)
Strand = Plus / Plus


Query: 827 tttaatggttaaaaataatttaaatcgtttacttaaaatctctaaagataa 877
||||||| | || ||||||||||||||| | |||||||||| ||||||||
Sbjct: 1015 tttaatgataaagaataatttaaatcgtctcattaaaatctcaaaagataa 1065


Score = 36.2 bits (18), Expect = 0.074
Identities = 27/30 (90%)
Strand = Plus / Plus


Query: 752 tttaaatattcaattaggtattgaaaatgt 781
|||||||||| |||| || |||||||||||
Sbjct: 934 tttaaatattgaattgggaattgaaaatgt 963


>Contig-U11777-1 (Contig-U11777-1Q) /CSM_Contig/Contig-U11777-1Q.Seq.d
Length = 1269

Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 827 tttaatggttaaaaataat 845
|||||||||||||||||||
Sbjct: 619 tttaatggttaaaaataat 637


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,175
Number of Sequences: 6905
Number of extensions: 18175
Number of successful extensions: 2117
Number of sequences better than 10.0: 250
length of query: 1047
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1031
effective length of database: 5,564,391
effective search space: 5736887121
effective search space used: 5736887121
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12288-1 (Contig-U12288-1Q) /CSM_Contig/Contig-U12288-1Q.Seq.d
(1047 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ437597) Dictyostelium discoideum cDNA clone:ddv34b23, 3' ... 1304 0.0 2
(BJ443018) Dictyostelium discoideum cDNA clone:ddv51l17, 3' ... 686 0.0 4
(BJ437330) Dictyostelium discoideum cDNA clone:ddv33m23, 3' ... 686 0.0 4
(BJ446203) Dictyostelium discoideum cDNA clone:ddv62a06, 3' ... 678 0.0 4
(BJ430001) Dictyostelium discoideum cDNA clone:ddv5o15, 3' e... 686 0.0 2
(BJ411759) Dictyostelium discoideum cDNA clone:ddv5o15, 5' e... 519 e-143 1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 54 3e-19 10
(BJ443423) Dictyostelium discoideum cDNA clone:ddv52j23, 3' ... 46 6e-07 3
(BJ446691) Dictyostelium discoideum cDNA clone:ddv63d18, 3' ... 36 7e-04 3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.003 11
(AE017308) Mycoplasma mobile 163K complete genome. 38 0.009 16
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.012 16
(AC215840) Populus trichocarpa clone POP043-C12, complete se... 36 0.014 11
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.090 14
(EK172644) 1095458082358 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.094 3
(AM456051) Vitis vinifera contig VV78X259841.7, whole genome... 38 0.13 5
(AJ430522) Dictyostelium discoideum partial pfk gene for ATP... 50 0.17 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 50 0.17 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 0.18 17
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 0.18 21
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 0.19 8
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 0.37 11
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 40 0.39 15
(CJ361610) Molgula tectiformis cDNA, cleaving embryo clone:m... 42 0.54 2
(CJ351170) Molgula tectiformis cDNA, cleaving embryo clone:m... 42 0.57 2
(CJ358954) Molgula tectiformis cDNA, cleaving embryo clone:m... 42 0.59 2
(AC090062) Homo sapiens chromosome 5 clone CTB-160P13, WORKI... 38 0.61 5
(EK459700) 1095468990240 Global-Ocean-Sampling_GS-32-01-01-1... 46 0.67 2
(EU025714) Salmo salar retinoic acid receptor gamma a (Rarga... 48 0.67 1
(CT030156) Mouse DNA sequence from clone RP23-191J8 on chrom... 48 0.67 1
(AC154834) Mus musculus BAC clone RP24-573L8 from chromosome... 48 0.67 1
(AC141483) Mus musculus BAC clone RP23-58E17 from chromosome... 48 0.67 1
(AC135291) Mus musculus BAC clone RP23-69G18 from chromosome... 48 0.67 1
(AC122745) Mus musculus chromosome 18, clone RP23-133M21, co... 48 0.67 1
(AC118734) Mus musculus chromosome 18, clone RP24-170D17, co... 48 0.67 1
(AC186058) Canis familiaris chromosome 14, clone XX-166M13, ... 48 0.67 1
(EK227657) 1095460164258 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.67 1
(BP873814) Apis mellifera mRNA, clone: p27E06_E06_10.ab1. 48 0.67 1
(BP873811) Apis mellifera mRNA, clone: p27E03_E03_09.ab1. 48 0.67 1
(BP873810) Apis mellifera mRNA, clone: p27E02_E02_10.ab1. 48 0.67 1
(EJ267019) 1095351022231 Global-Ocean-Sampling_GS-27-01-01-1... 30 0.78 4
(CT737136) Zebrafish DNA sequence from clone DKEYP-12B1 in l... 38 1.2 8
(AC096506) Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cance... 42 1.2 2
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ... 38 1.2 8
(CK841774) UI-R-BJ0p-ain-b-03-0-UI.s10 UI-R-BJ0p Rattus norv... 36 1.3 2
(AC134185) Rattus norvegicus clone CH230-119J16, WORKING DRA... 34 1.3 2
(AC097903) Rattus norvegicus clone CH230-146J6, *** SEQUENCI... 34 1.4 2
(AC168700) Strongylocentrotus purpuratus clone R3-3014D17, W... 42 1.4 7
(BE117631) UI-R-BS1-aze-b-01-0-UI.s1 UI-R-BS1 Rattus norvegi... 36 1.5 2
(AC146095) Pan troglodytes BAC clone RP43-48M24 from chromos... 40 1.5 4
(BP491960) Rattus norvegicus mRNA, clone:RI09494, 3' end, ex... 36 1.6 2
(AC020732) Homo sapiens BAC clone RP11-556H16 from X, comple... 42 1.7 2
(CT573504) Medicago truncatula chromosome 5 clone mth2-178o1... 40 1.7 8
(AZ680276) ENTJX31TR Entamoeba histolytica Sheared DNA Entam... 36 1.8 2
(BH151300) ENTPV70TR Entamoeba histolytica Sheared DNA Entam... 36 1.8 2
(AZ539954) ENTFP64TF Entamoeba histolytica Sheared DNA Entam... 36 1.8 2
(AF399011) Pseudomonas phage phiKZ, complete genome. 36 1.9 9
(AC173837) Strongylocentrotus purpuratus clone R3-3006C23, W... 42 2.6 5
(AP004087) Oryza sativa Japonica Group genomic DNA, chromoso... 38 2.6 6
(AM457644) Vitis vinifera contig VV78X053933.4, whole genome... 46 2.7 1
(AP004714) Homo sapiens genomic DNA, chromosome 8q23, clone:... 46 2.7 1
(AP001572) Homo sapiens genomic DNA, chromosome 8q23, clone:... 46 2.7 1
(AC025836) Homo sapiens chromosome 8, clone RP11-188I6, comp... 46 2.7 1
(AC012642) Homo sapiens chromosome 5 clone CTD-2287K1, compl... 46 2.7 1
(AC184968) Bos taurus clone CH240-115N19, WORKING DRAFT SEQU... 46 2.7 1
(AC173945) Callicebus moloch clone LB5-27E14, WORKING DRAFT ... 46 2.7 1
(AC168876) Bos taurus clone CH240-207L13, WORKING DRAFT SEQU... 46 2.7 1
(AC019138) Homo sapiens chromosome 5 clone RP11-637B14, WORK... 46 2.7 1
(AZ521919) 200PbA09 Pb MBN #21 Plasmodium berghei genomic 3'... 46 2.7 1
(FH615514) CHO_OF4535xj12r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.7 1
(FH615042) CHO_OF4535xi11r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.7 1
(FH414270) CHO_OF4867xc19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.7 1
(ER417606) 1092963680230 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.7 1
(EJ674500) 1092955072451 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.7 1
(EJ657984) 1092955013226 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.7 1
(BX555403) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.7 1
(FC698933) CAXX7348.fwd CAXX Lottia gigantea from male gonad... 46 2.7 1
(EJ657514) 1092955011634 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.7 2
(DV728236) RVL20849 Wackym-Soares normalized rat vestibular ... 36 2.8 2
(AE017263) Mesoplasma florum L1 complete genome. 32 3.0 15
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 3.2 19
(E06069) Autonomously Replicating Sequence(ARS) of pLLE1. 36 3.2 3
(X51832) Lentinus edodes mitochondrial linear plasmid DNA co... 36 3.2 3
(EK046455) 1092959554007 Global-Ocean-Sampling_GS-31-01-01-1... 32 3.3 3
(AM445803) Vitis vinifera, whole genome shotgun sequence, co... 32 3.4 5
(AC147877) Medicago truncatula clone mth2-9b13, complete seq... 34 3.4 8
(BJ352034) Dictyostelium discoideum cDNA clone:dda45m11, 3' ... 34 3.4 3
(AC210223) Macaca mulatta BAC CH250-362B18 (Children's Hosp... 40 3.6 5
(AC152637) Bos taurus clone CH240-16F17, WORKING DRAFT SEQUE... 38 3.8 7
(AC225471) Medicago truncatula clone mth2-176h19, WORKING DR... 36 3.9 8
(CD145140) MG1-0103U-A326-G11-U.B MG1-0103 Schistosoma manso... 40 4.0 2
(AA616080) vo92c03.r1 Barstead mouse irradiated colon MPLRB7... 34 4.0 2
(AE017245) Mycoplasma synoviae 53, complete genome. 36 4.2 17
(CT737344) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 4.3 6
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 32 4.4 2
(AP009890) Lotus japonicus genomic DNA, clone: LjT41D08, TM1... 32 4.6 6
(CK346701) L0905F11-3 NIA Mouse Newborn Kidney cDNA Library ... 34 4.6 2
(CA951267) it48f06.x1 Kaestner ngn3 - - Mus musculus cDNA cl... 34 4.6 2
(BB820681) Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDN... 34 4.6 2
(AC108895) Bos taurus clone RP42-88B14, WORKING DRAFT SEQUEN... 38 4.7 6

>(BJ437597) Dictyostelium discoideum cDNA clone:ddv34b23, 3' end,
single read.
Length = 746

Score = 1304 bits (658), Expect(2) = 0.0
Identities = 688/702 (98%)
Strand = Plus / Minus


Query: 304 aaagcatcgggtggtacagatccaggtgtgtcaaatgtataaacttttatctgaaaaagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aaagcatcgggtggtacagatccaggtgtgtcaaatgtataaacttttatctgaaaaagt 687


Query: 364 tgttaaaaactatattgtcgtggttaccgatgaagaggaaaatggatataaacatggtag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tgttaaaaactatattgtcgtggttaccgatgaagaggaaaatggatataaacatggtag 627


Query: 424 atttagcgagttgttcattcaatatcgtaaagaggttgcaccaaattgtaaattagtttt 483
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 626 atttagcgagttgttcattcaatatcgtaaagaggttgcaccnaattgtaaantagtttt 567


Query: 484 catttcattcattcctcaatactctgaaggtcaaatggtcggtgagttacgtagaaaagg 543
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 566 catttcattcattcctcaatactctgaaggtcnaatggtcggtgagttacgtagaaaagg 507


Query: 544 tttcgattcttcaactttaattcaaattcctttcgatgcaacaaatcctgatgtttcaca 603
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 506 tttcgattcttcaactttaattcanattcctttcgatgcaacaaatcctgatgtttcaca 447


Query: 604 aaatcgatggtatgctttcaagcttatcttgtgaatctgaacaattcaaagatcaattgg 663
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 446 aaatcgatggtatgctttcaagcttatcttgtgaatntgaacaattcaaagatcaattgg 387


Query: 664 acctccttgttactattctttcaacagttggttataaaaatggttttaaattcattaatg 723
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 386 acctccttgttactattctttcaacagttggttataanaatggttttaaattcattaatg 327


Query: 724 atagagcacctctcttaatgagattcgatttaaatattcaattaggtattgaaaatgttt 783
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 326 atagagcacctctcttaatgagattcgatttaaatattcaattaggtatngnaaatgttt 267


Query: 784 tatctattattaaaactaatccaactttagataactatcaatatttaatggttaaaaata 843
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 266 tatctattattaaaactaatccaactttagatnactatcaatatttaatggttaagaata 207


Query: 844 atttaaatcgtttacttaaaatctctaaagataataatgatttggtttctcttgaaactt 903
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 206 atttnaatcgtnnacttaaaatctctaaagataataatgatttggtttctcttgaagctt 147


Query: 904 ttaataatattcataaagaattttcaaaattatcaaaagatgatggtatctcagatatct 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttaataatattcataaagaattttcaaaattatcaaaagatgatggtatctcagatatct 87


Query: 964 tttaaaatctttatcaaatttgcaaccaatttctgttaaaga 1005
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tttaaaatctttatcaaatttgcaaccaatttctgttaaaga 45

Score = 28.2 bits (14), Expect(2) = 0.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 1007 attaaacaattaac 1020
||||||||||||||
Sbjct: 42 attaaacaattaac 29

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,303,443,674
Number of extensions: 81130971
Number of successful extensions: 6975112
Number of sequences better than 10.0: 145
Length of query: 1047
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1023
Effective length of database: 97,308,875,965
Effective search space: 99546980112195
Effective search space used: 99546980112195
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12288-1 (Contig-U12288-1Q) /CSM_Contig/Contig-U12288-1Q.Seq.d
(1047 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115592_24(AC115592|pid:none) Dictyostelium discoideum chromoso... 127 5e-62
CP001277_510(CP001277|pid:none) Candidatus Hamiltonella defensa ... 40 0.18
CP000770_5(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, c... 38 0.67
AM989987_9(AM989987|pid:none) Zygosaccharomyces rouxii strain CB... 37 1.5
CP000517_1002(CP000517|pid:none) Lactobacillus helveticus DPC 45... 36 2.6
CP001091_1790(CP001091|pid:none) Actinobacillus pleuropneumoniae... 36 2.6
AY190951_6(AY190951|pid:none) Drosophila willistoni clone DWIF01... 35 3.3
AP008971_755(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 35 3.3
AF250284_266(AF250284|pid:none) Amsacta moorei entomopoxvirus, c... 35 4.4
CU469464_86(CU469464|pid:none) Candidatus Phytoplasma mali strai... 35 5.7
AE001362_117(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 35 5.7
AE015450_249(AE015450|pid:none) Mycoplasma gallisepticum strain ... 35 5.7
CP000721_1477(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 35 5.7
AE017245_466(AE017245|pid:none) Mycoplasma synoviae 53, complete... 35 5.7
CP000312_474(CP000312|pid:none) Clostridium perfringens SM101, c... 34 7.5
CP000382_431(CP000382|pid:none) Clostridium novyi NT, complete g... 34 7.5
CP000382_680(CP000382|pid:none) Clostridium novyi NT, complete g... 34 9.7
CP000123_605(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 34 9.7

>AC115592_24(AC115592|pid:none) Dictyostelium discoideum chromosome 2
map 1-125959 strain AX4, complete sequence.
Length = 1982

Score = 127 bits (320), Expect(3) = 5e-62
Identities = 71/127 (55%), Positives = 89/127 (70%), Gaps = 3/127 (2%)
Frame = +3

Query: 603 KIDGMLSSLSCESEQFKDQLDLLVTILSTVGYKNGFKFINDRAPLLMRFDLNIQLGIENV 782
KIDG+LSSLSCESE FKDQLDL V IL VG K ++ I ++ LM F LNI+LGIENV
Sbjct: 650 KIDGVLSSLSCESESFKDQLDLFVNILQCVGDKQLYQMIKEKKNRLMSFGLNIELGIENV 709

Query: 783 LSII---KTNPTLDNYQYLMVKNNLNRLLKISKDNNDLVSLETFNNIHKEFSKLSKDDGI 953
S++ KT P + N LM+KNNLNRL+KISKDN + + + F I K+F KL KD+GI
Sbjct: 710 CSLLGNHKTTP-IGNMALLMIKNNLNRLIKISKDNKNEKAEQLFTKIQKDFIKLPKDEGI 768

Query: 954 SDIF*NL 974
+F +L
Sbjct: 769 QFLFDSL 775

Score = 119 bits (298), Expect(3) = 5e-62
Identities = 57/89 (64%), Positives = 74/89 (83%)
Frame = +2

Query: 338 MYKLLSEKVVKNYIVVVTDEEENGYKHGRFSELFIQYRKEVAPNCKLVFISFIPQYSEGQ 517
+Y L + K+VKNYIVVVTDEEEN +KHGRF++LFI+Y+KEVAPNCKLVF+SF+ +++GQ
Sbjct: 565 LYPLYNNKIVKNYIVVVTDEEENSFKHGRFADLFIRYQKEVAPNCKLVFVSFLALHAKGQ 624

Query: 518 MVGELRRKGFDSSTLIQIPFDATNPDVSQ 604
MV ELR KG + IQI FD ++PDVS+
Sbjct: 625 MVTELRSKGIEP---IQILFDRSSPDVSK 650

Score = 36.6 bits (83), Expect(3) = 5e-62
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = +1

Query: 277 NLFKLKDLVKASGGTDPGVS 336
NLFKLKDLVKA GGTD VS
Sbjct: 545 NLFKLKDLVKAGGGTDASVS 564

Score = 94.7 bits (234), Expect = 5e-18
Identities = 44/69 (63%), Positives = 49/69 (71%)
Frame = +2

Query: 59 EIPWFLSVMFGGSAPVGTRVYEFEKELKDPSKFTKERAIELINQFKPTYAFLRKNLPESL 238
E+PWFLSVMFG A GT VYEFEK LK P FT E A ELI +FKPTY FLRKNLP +
Sbjct: 344 EVPWFLSVMFGKPAEEGTHVYEFEKSLKTPGYFTNEVAFELIKKFKPTYPFLRKNLPSGI 403

Query: 239 FDGEMKAMV 265
D +MK +
Sbjct: 404 LDNQMKRFI 412

Score = 73.2 bits (178), Expect(3) = 5e-18
Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +2

Query: 338 MYKLLSEKVVKNYIVVVTDEEEN-GYKHGRFSELFIQYRKEVAPNCKLVFISFIPQYSEG 514
+Y L +K Y+V+VTDEEEN Y+ F +LF +Y EV+PNCKLVF+SF+ EG
Sbjct: 1307 LYPLYEKKEKLEYLVIVTDEEENCNYRGYSFCQLFKKYLDEVSPNCKLVFVSFLDHQQEG 1366

Query: 515 QMVGELRRKGFDSSTLIQIPFDATNPDVSQ 604
MV EL+R + +Q D PDV++
Sbjct: 1367 NMVTELKRD--YNIHPLQFKLDKNKPDVTK 1394

Score = 39.7 bits (91), Expect(3) = 5e-18
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Frame = +3

Query: 603 KIDGMLSSLSCESEQFKDQLDLLVTILSTVGYKNGFKFINDRAPLLMRFDLNIQLGIENV 782
KID ML++LSC+S +F Q+D L ++ ++G N FK D+ + ++ L I ++
Sbjct: 1394 KIDNMLTTLSCQSNEFLIQIDCLNLLIDSIGISN-FKLFLDKFNSKLFYN---TLTILSL 1449

Query: 783 LSIIKTNPTLDNYQYL---MVKNNLNRLLKISKD 875
I+K +L++ L ++ +L+ +SK+
Sbjct: 1450 FFILKNYISLEDSSKLSTSKIQELYEKLINVSKE 1483

Score = 21.9 bits (45), Expect(3) = 5e-18
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1

Query: 280 LFKLKDLVKASGGTDP 327
+FK+ DL+ +G T P
Sbjct: 1288 VFKVSDLISGTGATSP 1303

Score = 36.2 bits (82), Expect = 2.0
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Frame = +2

Query: 68 WFLSVMFGGSAPVGTRVYEFEK-ELKDPS-------KFTKERAI----ELINQFKPTYAF 211
WFL +FG P GT V F K E S K +E++I E++ +KP+Y+F
Sbjct: 1079 WFLDAVFG-KIPRGTIVEAFSKFEFITCSVGNDLITKEDEEKSINTLKEILLTYKPSYSF 1137

Query: 212 LRKNLPESLFDGEMKAMVXXXXIFSN*KTWSKHRVVQIQVCQM--YKLLSEKVVKNYIVV 385
+RK + S +K ++ N W H + +V + Y+L E + ++Y V+
Sbjct: 1138 IRKTIDPSKIPDSLKLIIAQYEDI-NTVLWWYHELCCFEVDNLLSYRLHKETLTQSYGVL 1196

Query: 386 V 388
+
Sbjct: 1197 L 1197

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,555,989,349
Number of extensions: 28552842
Number of successful extensions: 75651
Number of sequences better than 10.0: 18
Number of HSP's gapped: 75584
Number of HSP's successfully gapped: 25
Length of query: 349
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 220
Effective length of database: 633,664,753
Effective search space: 139406245660
Effective search space used: 139406245660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.85 gvh: 0.53 alm: 0.43 top: 0.30 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: extracellular, including cell wall
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U12288-1 is cyt

VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0