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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12285-1
Contig ID Contig-U12285-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12285-1 (Contig-U12285-1Q) /CSM_Contig/Contig-U12285-1Q.Seq.d
GGCAAAAACACATTAACATTTTTAAAAATAAAAAATATATAAATTTTAAG
AATGAATCAAAATAAAAATAATAATAATAAAAATCCAAAAATTAATTTAT
TAATTATTGGATGTGGTTGTATTGGTTTATCAACAGGTATTATTGCATTA
AAGAGTGGTAATTATAAGAGTGTATCAATTTGGGCCAAAGATTTACCACC
AAATACAACCTCAAATAAAGCAGCAGCATTATGGTATCCATTTTTATGTA
ATCCACTAGATTTAGTTGGTAAATGGTCAGCAGAAACCATGCAATATTAT
AAAGATCATATTATTAATGACCCAAAATCAGGTACAATCACAAAGAAAGT
AAATGAAATTTTCAGACGTCCACATCCAGAAGATCCAGAATGGAAACCAT
ACATTAAATCATTTAGAAGAGCTAGAAAAGATGAACTACCAGATGGATAT
GTAGATGGTTATGCAATTGATGACGGTTTCGTTATGGACACTGATATGTA
TATGGATTATTTAGTCGACCAATTCAAAAGTTTAGGTGGAATCATTGAAC
AAAGACACCTCGTTGATATTCGTGAAGCTTTTGTTGACCATGATGTAGTT
GTAAATTGCACCGGTTTAGGATCACGTGAATTATTCAATGATCGTACAAT
TTATCCAG----------TTCCNCGTTTAACAAANNCAGTTTTAGGTGGT
ACAAATCAAGAACCCGATTNCAATACNAATCCAACTAAAAAANATACTNA
AGAAATNTTNAAACGTGTAGCCATGATTTCNCCNCGTTTTGCTAAAAATA
NAATTGAAATTCAAGGTGTTAAAGTTGGTCTACGTCCTGCTANACATGAA
ATTCGTTTANAAAATGAATTCNTTNAAGGTGGTTCAAAATTAGTAGTTCA
NAACTATGGTCATGGTGGTAGTGGTTTCNCTGTAAGTTGGGGTTGTGCTA
TTGAAGCAATTAAATTAGTTGATCAAGGCNTACCAAAATTATTACCTTTT
AATAAATTAATAAGTTAATTATAAAAAAAAAAAAAGTAATATTAAAAAAA
AAGTAATAATAAAATAAAAAAAAAGAAAAGTTTTTTTAAATTTTAATTAA
TTTAAAAAACAAATATTTAAATGTTA
Gap gap included
Contig length 1116
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3380817
End point 3381933
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 4
Link to clone list U12285
List of clone(s) 

est1=VFB735F,1,367
est2=VHP792F,85,658
est3=VFB735Z,659,1078
est4=VHP792Z,962,1117
Translated Amino Acid sequence 
gkntltflkikni*ILRMNQNKNNNNKNPKINLLIIGCGCIGLSTGIIALKSGNYKSVSI
WAKDLPPNTTSNKAAALWYPFLCNPLDLVGKWSAETMQYYKDHIINDPKSGTITKKVNEI
FRRPHPEDPEWKPYIKSFRRARKDELPDGYVDGYAIDDGFVMDTDMYMDYLVDQFKSLGG
IIEQRHLVDIREAFVDHDVVVNCTGLGSRELFNDRTIYP---

---PRLTXXVLGGTNQEPDXNTNPTKKXTXEXXKRVAMISPRFAKNXIEIQGVKVGLRPA
XHEIRLXNEFXXGGSKLVVXNYGHGGSGFXVSWGCAIEAIKLVDQGXPKLLPFNKLIS*l
*kkkk*y*kksnnkikkkksffkf*li*ktni*ml
Translated Amino Acid sequence (All Frames) 
Frame A:
gkntltflkikni*ILRMNQNKNNNNKNPKINLLIIGCGCIGLSTGIIALKSGNYKSVSI
WAKDLPPNTTSNKAAALWYPFLCNPLDLVGKWSAETMQYYKDHIINDPKSGTITKKVNEI
FRRPHPEDPEWKPYIKSFRRARKDELPDGYVDGYAIDDGFVMDTDMYMDYLVDQFKSLGG
IIEQRHLVDIREAFVDHDVVVNCTGLGSRELFNDRTIYP---

---fxv*qxqf*vvqiknpixixiqlkxilkkxxnv*p*fxxvllkixlkfkvlklvyvl
lxmkfvxkmnsxkvvqn**fxtmvmvvvvsl*vgvvllkqln*likayqnyyllin**vn
ykkkksnikkkviik*kkrkvflnfn*fkkqifkc

Frame B:
akth*hf*k*kiykf*e*ikikiiiikiqkliy*lldvvvlvyqqvllh*rvviirvyqf
gpkiyhqiqpqikqqhygihfyvih*i*lvngqqkpcniikiillmtqnqvqsqrk*mkf
sdvhiqkiqngnhtlnhleelekmnyqmdm*mvmqlmtvslwtliciwii*stnskv*ve
slnkdtslifvkllltmm*l*iapv*dhvnysmivqfiq---

---sxfnkxsfrwyksrtrxqyxsn*kxyxrnxxtcshdfxxfc*kxn*nsrc*swstsc
xt*nsfxk*ixxrwfkisssxlwsww*wfxcklglcy*sn*is*srxtkiitf**inkli
ikkkkvilkkk***nkkkekff*ilinlknkylnv

Frame C:
qkhinifknkkyinfknesk*k****kskn*finywmwlywfinryycikew*l*ecinl
gqrfttkynlk*sssimvsifm*strfsw*mvsrnhail*rsyy**pkirynhkesk*nf
qtstsrrsrmetih*ii*ks*kr*ttrwicrwlcn**rfrygh*yvyglfsrpiqkfrwn
h*tktpr*ys*sfc*p*cscklhrfrit*iiq*synls---

---PRLTXXVLGGTNQEPDXNTNPTKKXTXEXXKRVAMISPRFAKNXIEIQGVKVGLRPA
XHEIRLXNEFXXGGSKLVVXNYGHGGSGFXVSWGCAIEAIKLVDQGXPKLLPFNKLIS*l
*kkkk*y*kksnnkikkkksffkf*li*ktni*ml
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12285-1 (Contig-U12285-1Q)
/CSM_Contig/Contig-U12285-1Q.Seq.d
         (1126 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12285-1 (Contig-U12285-1Q) /CSM_Contig/Conti...  1671  0.0
Contig-U06220-1 (Contig-U06220-1Q) /CSM_Contig/Conti...    36  0.080
Contig-U13932-1 (Contig-U13932-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U12120-1 (Contig-U12120-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U12032-1 (Contig-U12032-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U11540-1 (Contig-U11540-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U11206-1 (Contig-U11206-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U10265-1 (Contig-U10265-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U10129-1 (Contig-U10129-1Q) /CSM_Contig/Conti...    34  0.31
Contig-U09615-1 (Contig-U09615-1Q) /CSM_Contig/Conti...    34  0.31

>Contig-U12285-1 (Contig-U12285-1Q) /CSM_Contig/Contig-U12285-1Q.Seq.d
          Length = 1126

 Score = 1671 bits (843), Expect = 0.0
 Identities = 930/930 (100%)
 Strand = Plus / Plus

                                                                        
Query: 93   taatttattaattattggatgtggttgtattggtttatcaacaggtattattgcattaaa 152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93   taatttattaattattggatgtggttgtattggtttatcaacaggtattattgcattaaa 152

                                                                        
Query: 153  gagtggtaattataagagtgtatcaatttgggccaaagatttaccaccaaatacaacctc 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153  gagtggtaattataagagtgtatcaatttgggccaaagatttaccaccaaatacaacctc 212

                                                                        
Query: 213  aaataaagcagcagcattatggtatccatttttatgtaatccactagatttagttggtaa 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213  aaataaagcagcagcattatggtatccatttttatgtaatccactagatttagttggtaa 272

                                                                        
Query: 273  atggtcagcagaaaccatgcaatattataaagatcatattattaatgacccaaaatcagg 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273  atggtcagcagaaaccatgcaatattataaagatcatattattaatgacccaaaatcagg 332

                                                                        
Query: 333  tacaatcacaaagaaagtaaatgaaattttcagacgtccacatccagaagatccagaatg 392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333  tacaatcacaaagaaagtaaatgaaattttcagacgtccacatccagaagatccagaatg 392

                                                                        
Query: 393  gaaaccatacattaaatcatttagaagagctagaaaagatgaactaccagatggatatgt 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393  gaaaccatacattaaatcatttagaagagctagaaaagatgaactaccagatggatatgt 452

                                                                        
Query: 453  agatggttatgcaattgatgacggtttcgttatggacactgatatgtatatggattattt 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453  agatggttatgcaattgatgacggtttcgttatggacactgatatgtatatggattattt 512

                                                                        
Query: 513  agtcgaccaattcaaaagtttaggtggaatcattgaacaaagacacctcgttgatattcg 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513  agtcgaccaattcaaaagtttaggtggaatcattgaacaaagacacctcgttgatattcg 572

                                                                        
Query: 573  tgaagcttttgttgaccatgatgtagttgtaaattgcaccggtttaggatcacgtgaatt 632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573  tgaagcttttgttgaccatgatgtagttgtaaattgcaccggtttaggatcacgtgaatt 632

                                                                        
Query: 633  attcaatgatcgtacaatttatccagnnnnnnnnnnttccncgtttaacaaanncagttt 692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633  attcaatgatcgtacaatttatccagnnnnnnnnnnttccncgtttaacaaanncagttt 692

                                                                        
Query: 693  taggtggtacaaatcaagaacccgattncaatacnaatccaactaaaaaanatactnaag 752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693  taggtggtacaaatcaagaacccgattncaatacnaatccaactaaaaaanatactnaag 752

                                                                        
Query: 753  aaatnttnaaacgtgtagccatgatttcnccncgttttgctaaaaatanaattgaaattc 812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753  aaatnttnaaacgtgtagccatgatttcnccncgttttgctaaaaatanaattgaaattc 812

                                                                        
Query: 813  aaggtgttaaagttggtctacgtcctgctanacatgaaattcgtttanaaaatgaattcn 872
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  aaggtgttaaagttggtctacgtcctgctanacatgaaattcgtttanaaaatgaattcn 872

                                                                        
Query: 873  ttnaaggtggttcaaaattagtagttcanaactatggtcatggtggtagtggtttcnctg 932
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873  ttnaaggtggttcaaaattagtagttcanaactatggtcatggtggtagtggtttcnctg 932

                                                                        
Query: 933  taagttggggttgtgctattgaagcaattaaattagttgatcaaggcntaccaaaattat 992
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933  taagttggggttgtgctattgaagcaattaaattagttgatcaaggcntaccaaaattat 992

                                          
Query: 993  taccttttaataaattaataagttaattat 1022
            ||||||||||||||||||||||||||||||
Sbjct: 993  taccttttaataaattaataagttaattat 1022


>Contig-U06220-1 (Contig-U06220-1Q) /CSM_Contig/Contig-U06220-1Q.Seq.d
          Length = 533

 Score = 36.2 bits (18), Expect = 0.080
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 996  cttttaataaattaataa 1013
            ||||||||||||||||||
Sbjct: 60   cttttaataaattaataa 77


 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 1001 aataaattaataagttaat 1019
            ||||||||||||| |||||
Sbjct: 108  aataaattaataaattaat 126


 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 999  ttaataaattaataa 1013
            |||||||||||||||
Sbjct: 114  ttaataaattaataa 128


>Contig-U13932-1 (Contig-U13932-1Q) /CSM_Contig/Contig-U13932-1Q.Seq.d
          Length = 679

 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 93  taatttattaattattg 109
           |||||||||||||||||
Sbjct: 85  taatttattaattattg 101


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,248
Number of Sequences: 6905
Number of extensions: 10248
Number of successful extensions: 1275
Number of sequences better than 10.0: 126
length of query: 1126
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1110
effective length of database: 5,564,391
effective search space: 6176474010
effective search space used: 6176474010
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12285-1 (Contig-U12285-1Q) /CSM_Contig/Contig-U12285-1Q.Seq.d
         (1126 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...  1088   0.0    1
(BJ427571) Dictyostelium discoideum cDNA clone:ddv62h23, 5' ...  1080   0.0    1
(BJ429636) Dictyostelium discoideum cDNA clone:ddv4f09, 3' e...   575   e-159  1
(BJ411411) Dictyostelium discoideum cDNA clone:ddv4f09, 5' e...   513   e-141  1
(DU283095) 1098448263102 CHORI-243 Ovis aries genomic clone ...    48   0.73   1
(AC221451) Bos taurus clone CH240-410H13, WORKING DRAFT SEQU...    46   2.9    1
(AC164389) Bos taurus clone CH240-139E11, *** SEQUENCING IN ...    46   2.9    1
(AC020846) Mus musculus clone RP21-399J20, WORKING DRAFT SEQ...    46   2.9    1
(CC489406) CH240_322I13.T7 CHORI-240 Bos taurus genomic clon...    46   2.9    1
(ES617170) NGPBQ37TR NGPA Nasonia giraulti cDNA, mRNA sequence.    34   4.3    3
(AC175408) Bos taurus clone CH240-507F9, WORKING DRAFT SEQUE...    40   5.9    2
(AC214576) Bos taurus clone CH240-11G5, WORKING DRAFT SEQUEN...    40   7.6    2
(AM461178) Vitis vinifera, whole genome shotgun sequence, co...    36   9.2    3

>(AC116984) Dictyostelium discoideum chromosome 2 map 2567470-3108875
              strain AX4, complete sequence.
          Length = 541399

 Score = 1088 bits (549), Expect = 0.0
 Identities = 549/549 (100%)
 Strand = Plus / Minus


Query: 109    ggatgtggttgtattggtttatcaacaggtattattgcattaaagagtggtaattataag 168
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365543 ggatgtggttgtattggtttatcaacaggtattattgcattaaagagtggtaattataag 365484


Query: 169    agtgtatcaatttgggccaaagatttaccaccaaatacaacctcaaataaagcagcagca 228
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365483 agtgtatcaatttgggccaaagatttaccaccaaatacaacctcaaataaagcagcagca 365424


Query: 229    ttatggtatccatttttatgtaatccactagatttagttggtaaatggtcagcagaaacc 288
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365423 ttatggtatccatttttatgtaatccactagatttagttggtaaatggtcagcagaaacc 365364


Query: 289    atgcaatattataaagatcatattattaatgacccaaaatcaggtacaatcacaaagaaa 348
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365363 atgcaatattataaagatcatattattaatgacccaaaatcaggtacaatcacaaagaaa 365304


Query: 349    gtaaatgaaattttcagacgtccacatccagaagatccagaatggaaaccatacattaaa 408
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365303 gtaaatgaaattttcagacgtccacatccagaagatccagaatggaaaccatacattaaa 365244


Query: 409    tcatttagaagagctagaaaagatgaactaccagatggatatgtagatggttatgcaatt 468
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365243 tcatttagaagagctagaaaagatgaactaccagatggatatgtagatggttatgcaatt 365184


Query: 469    gatgacggtttcgttatggacactgatatgtatatggattatttagtcgaccaattcaaa 528
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365183 gatgacggtttcgttatggacactgatatgtatatggattatttagtcgaccaattcaaa 365124


Query: 529    agtttaggtggaatcattgaacaaagacacctcgttgatattcgtgaagcttttgttgac 588
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365123 agtttaggtggaatcattgaacaaagacacctcgttgatattcgtgaagcttttgttgac 365064


Query: 589    catgatgtagttgtaaattgcaccggtttaggatcacgtgaattattcaatgatcgtaca 648
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365063 catgatgtagttgtaaattgcaccggtttaggatcacgtgaattattcaatgatcgtaca 365004


Query: 649    atttatcca 657
              |||||||||
Sbjct: 365003 atttatcca 364995

 Score =  555 bits (280), Expect = e-153
 Identities = 330/353 (93%)
 Strand = Plus / Minus


Query: 669    ttccncgtttaacaaanncagttttaggtggtacaaatcaagaacccgattncaatacna 728
              |||| |||||||||||  ||||||||||||||||||||||||||| ||||| |||||| |
Sbjct: 364915 ttccacgtttaacaaatacagttttaggtggtacaaatcaagaacacgattacaatacaa 364856


Query: 729    atccaactaaaaaanatactnaagaaatnttnaaacgtgtagccatgatttcnccncgtt 788
              |||||||||||||| ||||| ||||||| || |||||||||||||||||||| || ||||
Sbjct: 364855 atccaactaaaaaagatactgaagaaatcttaaaacgtgtagccatgatttcaccacgtt 364796


Query: 789    ttgctaaaaatanaattgaaattcaaggtgttaaagttggtctacgtcctgctanacatg 848
              |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 364795 ttgctaaaaatagaattgaaattcaaggtgttaaagttggtctacgtcctgctagacatg 364736


Query: 849    aaattcgtttanaaaatgaattcnttnaaggtggttcaaaattagtagttcanaactatg 908
              ||||||||||| ||||||||||| || ||||||||||||||||||||||||| |||||||
Sbjct: 364735 aaattcgtttagaaaatgaattctttgaaggtggttcaaaattagtagttcataactatg 364676


Query: 909    gtcatggtggtagtggtttcnctgtaagttggggttgtgctattgaagcaattaaattag 968
              |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 364675 gtcatggtggtagtggtttcactgtaagttggggttgtgctattgaagcaattaaattag 364616


Query: 969    ttgatcaaggcntaccaaaattattaccttttaataaattaataagttaatta 1021
              ||||||||||  ||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 364615 ttgatcaaggtttaccaaaattattacattttaataaattaataagtaaatta 364563

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 865,262,070
Number of extensions: 48160244
Number of successful extensions: 3539771
Number of sequences better than 10.0: 14
Length of query: 1126
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1102
Effective length of database: 97,308,875,965
Effective search space: 107234381313430
Effective search space used: 107234381313430
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12285-1 (Contig-U12285-1Q) /CSM_Contig/Contig-U12285-1Q.Seq.d
         (1126 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556W1) RecName: Full=D-aspartate oxidase;          Short=DASOX...   363   e-150
AC116984_140(AC116984|pid:none) Dictyostelium discoideum chromos...   363   e-150
EU686616_1(EU686616|pid:none) Uncultured marine group II euryarc...    92   5e-31
CP000509_1743(CP000509|pid:none) Nocardioides sp. JS614, complet...    99   5e-27
AM420293_956(AM420293|pid:none) Saccharopolyspora erythraea NRRL...    81   2e-26
AM408590_1947(AM408590|pid:none) Mycobacterium bovis BCG Pasteur...    75   2e-23
CR954211_54(CR954211|pid:none) Ostreococcus tauri strain OTTH059...    82   2e-22
AL050350_3(AL050350|pid:none) Human DNA sequence from clone RP1-...    64   4e-21
AK293029_1(AK293029|pid:none) Homo sapiens cDNA FLJ77393 complet...    64   2e-20
BA000030_1678(BA000030|pid:none) Streptomyces avermitilis MA-468...    64   7e-20
CP000854_2772(CP000854|pid:none) Mycobacterium marinum M, comple...    73   2e-19
BT075717_1(BT075717|pid:none) Osmerus mordax clone omor-rgc-520-...    64   7e-19
AE014134_1231(AE014134|pid:none) Drosophila melanogaster chromos...    58   3e-18
(A8XJ44) RecName: Full=D-amino-acid oxidase 2;          Short=DA...    66   2e-17
(Q9Z1M5) RecName: Full=D-amino-acid oxidase;          Short=DAMO...    60   5e-17
BT075477_1(BT075477|pid:none) Osmerus mordax clone omor-rgc-502-...    60   5e-16
CP000479_2680(CP000479|pid:none) Mycobacterium avium 104, comple...    61   6e-16
AX741673_1(AX741673|pid:none) Sequence 20 from Patent WO02066672...    62   2e-15
AM269955_52(AM269955|pid:none) Aspergillus niger contig An01c008...    54   1e-13
AM920436_559(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    50   5e-11
AB042032_1(AB042032|pid:none) Candida boidinii DAO1 gene for D-a...    48   6e-11
BT039375_1(BT039375|pid:none) Zea mays full-length cDNA clone ZM...    47   1e-10
(P24552) RecName: Full=D-amino-acid oxidase;          Short=DAMO...    47   9e-10
(P18894) RecName: Full=D-amino-acid oxidase;          Short=DAMO...    67   9e-10
BC097581_1(BC097581|pid:none) Xenopus laevis hypothetical protei...    67   9e-10
BT044118_1(BT044118|pid:none) Drosophila melanogaster FI02859 fu...    44   1e-09
AE013599_1200(AE013599|pid:none) Drosophila melanogaster chromos...    44   1e-09
AY070629_1(AY070629|pid:none) Drosophila melanogaster RE73481 fu...    44   1e-09
AM114791_1(AM114791|pid:none) Platynereis dumerilii partial dao ...    66   3e-09
EU213071_1(EU213071|pid:none) Cyprinus carpio D-amino acid oxida...    64   7e-09
(P22942) RecName: Full=D-amino-acid oxidase;          Short=DAMO...    64   7e-09
EU213072_1(EU213072|pid:none) Cyprinus carpio D-amino acid oxida...    64   7e-09
S01340(S01340)D-amino-acid oxidase (EC 1.4.3.3) - human                64   1e-08
AY893124_1(AY893124|pid:none) Synthetic construct Homo sapiens c...    64   1e-08
CR382132_1290(CR382132|pid:none) Yarrowia lipolytica strain CLIB...    45   2e-08
D10211_1(D10211|pid:none) Mus musculus Dao-1c mRNA for D-amino-a...    63   2e-08
AY421707_1(AY421707|pid:none) Cyprinus carpio D-amino acid oxida...    62   4e-08
(O35078) RecName: Full=D-amino-acid oxidase;          Short=DAMO...    62   4e-08
AB243405_3(AB243405|pid:none) Streptomyces albulus chloramphenic...    62   4e-08
BX511005_4(BX511005|pid:none) Zebrafish DNA sequence from clone ...    61   6e-08
BC066686_1(BC066686|pid:none) Danio rerio D-amino-acid oxidase 2...    60   1e-07
(Q9Z302) RecName: Full=D-amino-acid oxidase;          Short=DAMO...    59   3e-07
BT075245_1(BT075245|pid:none) Osmerus mordax clone omor-rgc-517-...    59   4e-07
(O45307) RecName: Full=D-aspartate oxidase 2;          Short=DAS...    57   9e-07
BX511005_5(BX511005|pid:none) Zebrafish DNA sequence from clone ...    57   9e-07
CR382137_535(CR382137|pid:none) Debaryomyces hansenii strain CBS...    44   8e-06
CS174784_1(CS174784|pid:none) Sequence 9 from Patent WO200509058...    42   8e-06
T19979(T19979)hypothetical protein C47A10.5 - Caenorhabditis ele...    54   1e-05
AX741659_1(AX741659|pid:none) Sequence 6 from Patent WO02066672....    52   4e-05
BX538210_1(BX538210|pid:none) Homo sapiens mRNA; cDNA DKFZp686F0...    52   4e-05
(Q19564) RecName: Full=D-aspartate oxidase 1;          Short=DAS...    52   5e-05
AM746676_5337(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    51   7e-05
CP000497_232(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    50   1e-04
CU633872_37(CU633872|pid:none) Podospora anserina genomic DNA ch...    50   1e-04
(A8WXM1) RecName: Full=D-aspartate oxidase 1;          Short=DAS...    50   2e-04
AF309689_6(AF309689|pid:none) Neurospora crassa chromosome 4 pdx...    49   3e-04
(P80324) RecName: Full=D-amino-acid oxidase;          Short=DAMO...    49   4e-04
CR382131_848(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    49   4e-04
AP007166_500(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    49   4e-04
CP000473_5377(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    48   7e-04
AE008923_3673(AE008923|pid:none) Xanthomonas axonopodis pv. citr...    47   0.002
CP000388_3776(CP000388|pid:none) Pseudoalteromonas atlantica T6c...    47   0.002
AP008229_594(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MA...    46   0.003
FM992688_338(FM992688|pid:none) Candida dubliniensis CD36 chromo...    46   0.003
AM270115_95(AM270115|pid:none) Aspergillus niger contig An06c009...    40   0.003
AM920689_3903(AM920689|pid:none) Xanthomonas campestris pv. camp...    45   0.006
CP000325_1373(CP000325|pid:none) Mycobacterium ulcerans Agy99, c...    44   0.008
AM920435_666(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    44   0.008
AM920433_186(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    43   0.018
CP000854_1444(CP000854|pid:none) Mycobacterium marinum M, comple...    43   0.023
AB121230_1(AB121230|pid:none) Cryptococcus humicola ChDDO gene f...    42   0.030
AY514426_1(AY514426|pid:none) Trigonopsis variabilis D-amino aci...    40   0.15
(Q99042) RecName: Full=D-amino-acid oxidase;          Short=DAMO...    40   0.15
AX008536_1(AX008536|pid:none) Sequence 2 from Patent EP0969088.        40   0.15
AX008535_1(AX008535|pid:none) Sequence 1 from Patent EP0969088.        40   0.15
FJ603100_1(FJ603100|pid:none) Trigonopsis variabilis strain 0864...    40   0.15
AF313480_1(AF313480|pid:none) Drosophila melanogaster gamma dyne...    40   0.20
EU514469_1(EU514469|pid:none) Drosophila erecta kl-3 gamma dynei...    40   0.20
FM992691_298(FM992691|pid:none) Candida dubliniensis CD36 chromo...    39   0.26
AP007151_807(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    39   0.44
CP000498_310(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    38   0.75
CR382139_910(CR382139|pid:none) Debaryomyces hansenii strain CBS...    38   0.75
AM180091_1(AM180091|pid:none) Mus musculus mRNA for d-aspartate ...    37   1.3
AP007157_237(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    36   2.2
AM920435_1554(AM920435|pid:none) Penicillium chrysogenum Wiscons...    36   2.9
AM920429_97(AM920429|pid:none) Penicillium chrysogenum Wisconsin...    35   3.7
BA000001_577(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c...    35   4.9
AP007171_664(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    35   6.3
CP000896_1362(CP000896|pid:none) Acholeplasma laidlawii PG-8A, c...    35   6.3
CP000606_23(CP000606|pid:none) Shewanella loihica PV-4, complete...    34   8.3

>(Q556W1) RecName: Full=D-aspartate oxidase;          Short=DASOX;
                  EC=1.4.3.1; AltName: Full=DDO;
          Length = 346

 Score =  363 bits (932), Expect(2) = e-150
 Identities = 171/171 (100%), Positives = 171/171 (100%)
 Frame = +1

Query: 145 ALKSGNYKSVSIWAKDLPPNTTSNKAAALWYPFLCNPLDLVGKWSAETMQYYKDHIINDP 324
           ALKSGNYKSVSIWAKDLPPNTTSNKAAALWYPFLCNPLDLVGKWSAETMQYYKDHIINDP
Sbjct: 32  ALKSGNYKSVSIWAKDLPPNTTSNKAAALWYPFLCNPLDLVGKWSAETMQYYKDHIINDP 91

Query: 325 KSGTITKKVNEIFRRPHPEDPEWKPYIKSFRRARKDELPDGYVDGYAIDDGFVMDTDMYM 504
           KSGTITKKVNEIFRRPHPEDPEWKPYIKSFRRARKDELPDGYVDGYAIDDGFVMDTDMYM
Sbjct: 92  KSGTITKKVNEIFRRPHPEDPEWKPYIKSFRRARKDELPDGYVDGYAIDDGFVMDTDMYM 151

Query: 505 DYLVDQFKSLGGIIEQRHLVDIREAFVDHDVVVNCTGLGSRELFNDRTIYP 657
           DYLVDQFKSLGGIIEQRHLVDIREAFVDHDVVVNCTGLGSRELFNDRTIYP
Sbjct: 152 DYLVDQFKSLGGIIEQRHLVDIREAFVDHDVVVNCTGLGSRELFNDRTIYP 202

 Score =  193 bits (490), Expect(2) = e-150
 Identities = 98/115 (85%), Positives = 98/115 (85%)
 Frame = +2

Query: 671  PRLTXXVLGGTNQEPDXNTNPTKKXTXEXXKRVAMISPRFAKNXIEIQGVKVGLRPAXHE 850
            PRLT  VLGGTNQE D NTNPTKK T E  KRVAMISPRFAKN IEIQGVKVGLRPA HE
Sbjct: 230  PRLTNTVLGGTNQEHDYNTNPTKKDTEEILKRVAMISPRFAKNRIEIQGVKVGLRPARHE 289

Query: 851  IRLXNEFXXGGSKLVVXNYGHGGSGFXVSWGCAIEAIKLVDQGXPKLLPFNKLIS 1015
            IRL NEF  GGSKLVV NYGHGGSGF VSWGCAIEAIKLVDQG PKLL FNKLIS
Sbjct: 290  IRLENEFFEGGSKLVVHNYGHGGSGFTVSWGCAIEAIKLVDQGLPKLLHFNKLIS 344

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,329,345,309
Number of extensions: 23396796
Number of successful extensions: 58078
Number of sequences better than 10.0: 90
Number of HSP's gapped: 57982
Number of HSP's successfully gapped: 150
Length of query: 375
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 245
Effective length of database: 630,428,194
Effective search space: 154454907530
Effective search space used: 154454907530
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.32  gvh: 0.66  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.30  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: Golgi
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for Contig-U12285-1 is mit
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0