Contig-U12284-1
Contig ID Contig-U12284-1
Contig update 2002.12.18
Contig sequence
>Contig-U12284-1 (Contig-U12284-1Q) /CSM_Contig/Contig-U12284-1Q.Seq.d
CACTGTTGGCCTACTGGATTTTTTATTTTATTATTTTTATTTATTTAACT
AACTTGTAATTTCATAGTAATATTAACAGCAGCAAGTTCAGCAACTAAAT
AAGTGAAAACGTAAGGAATTGAAATTGTAGCGATTGAATCACTGGATTTA
CAAGATTTACATTCAGAAACAGTTTGATTGGAATAATCTTTTTTAGAGTA
GATTGTGAGGGTACTACCACATAATTTACAAACTTTAATCTTTGCGAAAT
CAGAGGATTTCATGAGACGATCATTCAAACAGAAACTAGCACCATGAGCC
AAAAGGGAATCACGTTCCATCTCACCGAAACGAATACCACCACCAACCTT
ACGACCTTTAATTGGTTGACGAGTTAAAGCATTAACTTTACCGAGAGCAC
GTACTTGATATTTATCTTTAACCATATGACGTAATCTTTGATAGTAACAA
ACACCGAAAAAGATTTCACATTCAAATTCTTTACCAGTGGTACCACTATA
CATTTGTTCATTACCAAAACGATTGAAACCTGCCTTCGCCAATTGTTCAC
CAAAGAAATCGATGGCTGTATTGTTTTCATCGAATTGGAAAGCGGTGGCA
TCTTGGAATTTACCATGGATTGCACCAGCTTTACCGGCTAAAATCTCTAC
CAACATACCAATGGTCATACGTGATGGGAAAGCATTTGGATTGATAATTA
CATCTGGTTTCATACCACTTTCAGTGAATGGCATATTAATTTCTGG----
------AACAATGAAAACATAGCAGTTGGTGAAGTTTCAATATGAGTTGT
AACACCTTTGATAACTTCATGTGGTACAACAGCAATCTCCATATATAGTT
GTTCTTGTGGTCCAATCAATTCATTTTGACCACTTGTCAAATTGACTACT
GGTCTCATGAAACGTGCACCAGTTGTAAACAATGAAATGCCTGAATATTG
ACCATTTTCAACGTTGGTTGGTGGTGCATATGAAATTTCCATGGTTTTTG
GAATTGATGGTTCATTACCCATTGAACGAAGATAACGTAACATTTTAACC
ATCTCTTCACCTGCTTTTGGTTCAATCTTACCCAATACACGACCATCCAA
TGTAATAGTGAGATATTGATGTTGATAAACACTAACCATATCAATTGGTA
ACATACCATGTGCTGCTAAAAATGATGGTAATAATGTTTGTGCCTTTTGA
ACAGTTGGATCTTGTGCTGCATCAACTGTAACCAAACAATTTGATGATAA
ATGATTCAATAAACCACATGGTGCACCATCTGGTGTATGTACTGGACAGA
AAAAGCCCCAACTTTCTGGCATCAACTTTCTAATTGCTGTAGTTTTCATT
GTTGCAAAAAATGCACCTCT

Gap gap included
Contig length 1360
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3032810
End point 3034153
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U12284
List of clone(s)

est1=VFB702F,1,478
est2=VHA453Z,31,746
est3=VFB702Z,747,1361
Translated Amino Acid sequence
hcwptgffillflfi*ltcnfiviltaassatk*vkt*gieivaiesldlqdlhsetv*l
e*sfle*ivrvlphnlqtlifaksedfmrrsfkqklap*akresrsispkrippptlrpl
ig*rvkaltlprart*ylslti*rnl***QTPKKISHSNSLPVVPLYICSLPKRLKPAFA
NCSPKKSMAVLFSSNWKAVASWNLPWIAPALPAKISTNIPMVIRDGKAFGLIITSGFIPL
SVNGILIS---

---NNENIAVGEVSI*vvtplitscgttaisiyscscgpinsf*plvklttglmkrapvv
nnempey*pfstlvggayeismvfgidgslpierr*rniltisspafgsilpntrpsnvi
vry*c**tltisignipcaakndgnnvcaf*tvgscaastvtkqfddk*fnkphgapsgv
ctgqkkpqlsginfliavvfivaknap


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgffillflfi*ltcnfiviltaassatk*vkt*gieivaiesldlqdlhsetv*l
e*sfle*ivrvlphnlqtlifaksedfmrrsfkqklap*akresrsispkrippptlrpl
ig*rvkaltlprart*ylslti*rnl***QTPKKISHSNSLPVVPLYICSLPKRLKPAFA
NCSPKKSMAVLFSSNWKAVASWNLPWIAPALPAKISTNIPMVIRDGKAFGLIITSGFIPL
SVNGILIS---

---NNENIAVGEVSI*vvtplitscgttaisiyscscgpinsf*plvklttglmkrapvv
nnempey*pfstlvggayeismvfgidgslpierr*rniltisspafgsilpntrpsnvi
vry*c**tltisignipcaakndgnnvcaf*tvgscaastvtkqfddk*fnkphgapsgv
ctgqkkpqlsginfliavvfivaknap

Frame B:
tvglldflfyyfylfn*lvis**y*qqqvqqlnk*krkelkl*rlnhwiykiyiqkqfdw
nnlf*srl*gyyhiiykl*slrnqris*ddhsnrn*hhepkgnhvpshrneyhhqpydl*
lvdelkh*lyrehvldiyl*pydvifdsnkhrkrfhiqilyqwyhytfvhyqnd*nlpsp
ivhqrnrwlycfhrigkrwhlgiyhglhqlyrlkslptyqwsyvmgkhld**lhlvsyhf
q*may*fl---

---tmkt*qlvkfqyel*hl**lhvvqqqspyivvlvvqsihfdhlsn*llvs*nvhql*
tmkclnidhfqrwlvvhmkfpwflelmvhyplnednvtf*pslhlllvqsypihdhpm**
*didvdkh*pyqlvtyhvllkmmvimfvpfeqldlvlhql*pnnlmindsinhmvhhlvy
vldrkspnflastf*ll*fsllqkmhl

Frame C:
llaywifyfiifiyltnl*fhsninsskfsn*isenvrn*ncsd*itgftrftfrnslig
iiffrvdcegttt*ftnfnlceirgfhetiiqtetstmsqkgitfhltetntttnlttfn
wlts*sinftestylififnhmt*slivtntekdftfkfftsgttihlfitktietclrq
lftkeidgcivfielesggileftmdctsftg*nlyqhtnght*wesiwidnyiwfhttf
sewhinfw---

---q*khssw*sfnmscntfdnfmwynsnlhi*lflwsnqfilttcqidywshetctsck
q*na*iltifnvgwwci*nfhgfwn*wfith*tkit*hfnhlftcfwfnltqyttiqcns
eilmlintnhinw*htmcc*k*w**clcllnswilccincnqti***miq*ttwctiwcm
ywtekaptfwhqlsnccsfhcckkcts

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12284-1 (Contig-U12284-1Q)
/CSM_Contig/Contig-U12284-1Q.Seq.d
(1370 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12284-1 (Contig-U12284-1Q) /CSM_Contig/Conti... 2563 0.0
Contig-U12453-1 (Contig-U12453-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U12504-1 (Contig-U12504-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U10738-1 (Contig-U10738-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13399-1 (Contig-U13399-1Q) /CSM_Contig/Conti... 36 0.097
Contig-U12216-1 (Contig-U12216-1Q) /CSM_Contig/Conti... 36 0.097
Contig-U11316-1 (Contig-U11316-1Q) /CSM_Contig/Conti... 36 0.097
Contig-U06541-1 (Contig-U06541-1Q) /CSM_Contig/Conti... 36 0.097
Contig-U06334-1 (Contig-U06334-1Q) /CSM_Contig/Conti... 36 0.097
Contig-U14749-1 (Contig-U14749-1Q) /CSM_Contig/Conti... 34 0.38

>Contig-U12284-1 (Contig-U12284-1Q) /CSM_Contig/Contig-U12284-1Q.Seq.d
Length = 1370

Score = 2563 bits (1293), Expect = 0.0
Identities = 1323/1323 (100%)
Strand = Plus / Plus


Query: 48 actaacttgtaatttcatagtaatattaacagcagcaagttcagcaactaaataagtgaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 actaacttgtaatttcatagtaatattaacagcagcaagttcagcaactaaataagtgaa 107


Query: 108 aacgtaaggaattgaaattgtagcgattgaatcactggatttacaagatttacattcaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 aacgtaaggaattgaaattgtagcgattgaatcactggatttacaagatttacattcaga 167


Query: 168 aacagtttgattggaataatcttttttagagtagattgtgagggtactaccacataattt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 aacagtttgattggaataatcttttttagagtagattgtgagggtactaccacataattt 227


Query: 228 acaaactttaatctttgcgaaatcagaggatttcatgagacgatcattcaaacagaaact 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 acaaactttaatctttgcgaaatcagaggatttcatgagacgatcattcaaacagaaact 287


Query: 288 agcaccatgagccaaaagggaatcacgttccatctcaccgaaacgaataccaccaccaac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agcaccatgagccaaaagggaatcacgttccatctcaccgaaacgaataccaccaccaac 347


Query: 348 cttacgacctttaattggttgacgagttaaagcattaactttaccgagagcacgtacttg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cttacgacctttaattggttgacgagttaaagcattaactttaccgagagcacgtacttg 407


Query: 408 atatttatctttaaccatatgacgtaatctttgatagtaacaaacaccgaaaaagatttc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atatttatctttaaccatatgacgtaatctttgatagtaacaaacaccgaaaaagatttc 467


Query: 468 acattcaaattctttaccagtggtaccactatacatttgttcattaccaaaacgattgaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 acattcaaattctttaccagtggtaccactatacatttgttcattaccaaaacgattgaa 527


Query: 528 acctgccttcgccaattgttcaccaaagaaatcgatggctgtattgttttcatcgaattg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acctgccttcgccaattgttcaccaaagaaatcgatggctgtattgttttcatcgaattg 587


Query: 588 gaaagcggtggcatcttggaatttaccatggattgcaccagctttaccggctaaaatctc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaaagcggtggcatcttggaatttaccatggattgcaccagctttaccggctaaaatctc 647


Query: 648 taccaacataccaatggtcatacgtgatgggaaagcatttggattgataattacatctgg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 taccaacataccaatggtcatacgtgatgggaaagcatttggattgataattacatctgg 707


Query: 708 tttcataccactttcagtgaatggcatattaatttctggnnnnnnnnnnaacaatgaaaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttcataccactttcagtgaatggcatattaatttctggnnnnnnnnnnaacaatgaaaa 767


Query: 768 catagcagttggtgaagtttcaatatgagttgtaacacctttgataacttcatgtggtac 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 catagcagttggtgaagtttcaatatgagttgtaacacctttgataacttcatgtggtac 827


Query: 828 aacagcaatctccatatatagttgttcttgtggtccaatcaattcattttgaccacttgt 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aacagcaatctccatatatagttgttcttgtggtccaatcaattcattttgaccacttgt 887


Query: 888 caaattgactactggtctcatgaaacgtgcaccagttgtaaacaatgaaatgcctgaata 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 caaattgactactggtctcatgaaacgtgcaccagttgtaaacaatgaaatgcctgaata 947


Query: 948 ttgaccattttcaacgttggttggtggtgcatatgaaatttccatggtttttggaattga 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ttgaccattttcaacgttggttggtggtgcatatgaaatttccatggtttttggaattga 1007


Query: 1008 tggttcattacccattgaacgaagataacgtaacattttaaccatctcttcacctgcttt 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 tggttcattacccattgaacgaagataacgtaacattttaaccatctcttcacctgcttt 1067


Query: 1068 tggttcaatcttacccaatacacgaccatccaatgtaatagtgagatattgatgttgata 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 tggttcaatcttacccaatacacgaccatccaatgtaatagtgagatattgatgttgata 1127


Query: 1128 aacactaaccatatcaattggtaacataccatgtgctgctaaaaatgatggtaataatgt 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 aacactaaccatatcaattggtaacataccatgtgctgctaaaaatgatggtaataatgt 1187


Query: 1188 ttgtgccttttgaacagttggatcttgtgctgcatcaactgtaaccaaacaatttgatga 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 ttgtgccttttgaacagttggatcttgtgctgcatcaactgtaaccaaacaatttgatga 1247


Query: 1248 taaatgattcaataaaccacatggtgcaccatctggtgtatgtactggacagaaaaagcc 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 taaatgattcaataaaccacatggtgcaccatctggtgtatgtactggacagaaaaagcc 1307


Query: 1308 ccaactttctggcatcaactttctaattgctgtagttttcattgttgcaaaaaatgcacc 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 ccaactttctggcatcaactttctaattgctgtagttttcattgttgcaaaaaatgcacc 1367


Query: 1368 tct 1370
|||
Sbjct: 1368 tct 1370


Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactgg 17
|||||||||||||||||
Sbjct: 1 cactgttggcctactgg 17


>Contig-U12453-1 (Contig-U12453-1Q) /CSM_Contig/Contig-U12453-1Q.Seq.d
Length = 1034

Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus


Query: 315 ttccatctcaccgaaacgaataccaccacc 344
|||||||||||| ||||||| |||||||||
Sbjct: 792 ttccatctcacctaaacgaagaccaccacc 763


>Contig-U12504-1 (Contig-U12504-1Q) /CSM_Contig/Contig-U12504-1Q.Seq.d
Length = 1917

Score = 40.1 bits (20), Expect = 0.006
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1222 tcaactgtaaccaaacaatt 1241
||||||||||||||||||||
Sbjct: 1855 tcaactgtaaccaaacaatt 1874


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,426
Number of Sequences: 6905
Number of extensions: 13426
Number of successful extensions: 1719
Number of sequences better than 10.0: 511
length of query: 1370
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1354
effective length of database: 5,564,391
effective search space: 7534185414
effective search space used: 7534185414
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA
Query= Contig-U12284-1 (Contig-U12284-1Q) /CSM_Contig/Contig-U12284-1Q.Seq.d
(1370 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ436587) Dictyostelium discoideum cDNA clone:ddv31j14, 3' ... 1348 0.0 2
(BJ429576) Dictyostelium discoideum cDNA clone:ddv4d01, 3' e... 1217 0.0 1
(BJ411347) Dictyostelium discoideum cDNA clone:ddv4d01, 5' e... 837 0.0 2
(G65021) DH0281 Dictyostelium discoideum ( P.Dear ) Dictyost... 829 0.0 1
(CZ537778) SRAA-aad15d12.g1 Strongyloides ratti whole genome... 82 2e-23 2
(DJ210926) Method for identification of useful proteins deri... 54 6e-20 4
(DQ331539) Synthetic construct Saccharomyces cerevisiae clon... 54 2e-17 4
(EA397372) Sequence 46196 from patent US 7314974. 54 2e-17 4
(M62804) S.cerevisiae RNA polymerase I second-largest subuni... 54 6e-17 4
(AL429493) clone BA0AB032A02 of library BA0AB from strain CL... 70 4e-16 3
(AZ530830) ENTCL95TR Entamoeba histolytica Sheared DNA Entam... 74 1e-15 3
(AZ546238) ENTEA92TRB Entamoeba histolytica Sheared DNA Enta... 74 2e-15 3
(AZ681367) ENTKQ40TR Entamoeba histolytica Sheared DNA Entam... 76 2e-15 2
(AZ674048) ENTMG33TF Entamoeba histolytica Sheared DNA Entam... 76 2e-15 2
(BH152742) ENTQF66TF Entamoeba histolytica Sheared DNA Entam... 76 2e-15 2
(AZ690834) ENTKB47TR Entamoeba histolytica Sheared DNA Entam... 76 2e-15 2
(CZ291085) cp73f08.r Candida parapsilosis Random Genomic Lib... 94 3e-15 2
(Z49919) S.cerevisiae chromosome XVI cosmid 9531. 54 6e-15 4
(U31900) Saccharomyces cerevisiae chromosome XVI cosmid 9723... 54 1e-14 5
(EX714977) SB_AW217751a11.esd.z AW2 Schistosoma mansoni cDNA... 74 4e-13 2
(AZ681919) ENTLH74TR Entamoeba histolytica Sheared DNA Entam... 74 7e-13 2
(BH153437) ENTRB18TR Entamoeba histolytica Sheared DNA Entam... 74 8e-13 2
(AZ684175) ENTHF45TF Entamoeba histolytica Sheared DNA Entam... 74 8e-13 2
(DQ914533) Pichia pastoris strain GS115 RNA polymerase gene,... 74 2e-12 3
(DI133469) Target gene of anti-cancer drugs and screening ki... 60 3e-12 4
(BH152752) ENTQF66TR Entamoeba histolytica Sheared DNA Entam... 74 4e-11 2
(FE257731) CAPH6777.rev CAPH Naegleria gruberi amoeba stage ... 48 7e-11 4
(FE257732) CAPH6777.fwd CAPH Naegleria gruberi amoeba stage ... 48 8e-11 4
(CP000582) Ostreococcus lucimarinus CCE9901 chromosome 2, co... 60 2e-09 2
(CR382138) Debaryomyces hansenii chromosome F of strain CBS7... 66 3e-09 20
(CR382122) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 70 3e-09 13
(AZ681906) ENTLH74TF Entamoeba histolytica Sheared DNA Entam... 76 4e-09 1
(AX489338) Sequence 6638 from Patent WO02053728. 50 5e-09 4
(AZ690828) ENTKB47TF Entamoeba histolytica Sheared DNA Entam... 74 2e-08 1
(EX506053) LG_EG1176B31e05.esd.y EG1 Schistosoma mansoni cDN... 74 2e-08 1
(DJ134821) Method for identification of useful proteins deri... 58 2e-08 2
(AM667089) Entamoeba terrapinae GSS, clone terra121c08.q1k. 50 3e-08 2
(Z71255) S.cerevisiae chromosome XVI 165536 bp sequence, cen... 54 8e-08 6
(CU329671) Schizosaccharomyces pombe chromosome II. 60 1e-07 2
(AL429621) clone BA0AB032G05 of library BA0AB from strain CL... 70 2e-07 1
(DY888548) CeleSEQ5643 Cunninghamella elegans pBluescript (E... 68 1e-06 1
(EJ840240) 1093017825562 Global-Ocean-Sampling_GS-30-02-01-1... 54 2e-06 3
(DJ025884) Genome-wide DNA marker of Saccharomyces cerevisiae. 54 7e-06 11
(CR940353) Theileria annulata genomic DNA chromosome 4. 64 1e-05 1
(FE845475) CAFH983.rev CAFH Pichia stipitis aerobic dextrose... 64 1e-05 1
(ES290006) pq003-e10.T7.186381.ab1 non-sporulating culture o... 54 2e-05 2
(EJ965058) 1093022034177 Global-Ocean-Sampling_GS-30-02-01-1... 54 3e-05 2
(FG014648) CBOT14135.rev CBOT Phytophthora capsici LT1534 My... 44 3e-04 3
(CP000499) Pichia stipitis CBS 6054 chromosome 5, complete s... 58 0.001 1
(BZ304608) KD3044.q1 Kluyveromyces delphensis Random Genomic... 58 0.001 1
(FE857557) CAFW543.rev CAFW Pichia stipitis oxygen limited x... 58 0.001 1
(FE853748) CAFS605.rev CAFS Pichia stipitis oxygen limited d... 58 0.001 1
(FE842393) CAFG750.rev CAFG Pichia stipitis aerobic dextrose... 58 0.001 1
(CR380956) Candida glabrata strain CBS138 chromosome J compl... 56 0.004 1
(EW953178) G894P5205FK5.T0 Ixodes scapularis Pooled Non-infe... 56 0.004 1
(EW887961) G894P557RA10.T0 Ixodes scapularis Pooled Non-infe... 56 0.004 1
(EW887960) G894P557FA10.T0 Ixodes scapularis Pooled Non-infe... 56 0.004 1
(EW854136) G894P5120FE4.T0 Ixodes scapularis Pooled Non-infe... 56 0.004 1
(EW793491) G893P518FN13.T0 Ixodes scapularis Pooled Non-infe... 56 0.004 1
(EI014989) bb13b07.f Dekkera bruxellensis Random Genomic Lib... 40 0.005 2
(BH161901) ENTQS89TR Entamoeba histolytica Sheared DNA Entam... 40 0.012 2
(FE847807) CAFO1117.rev CAFO Pichia stipitis aerobic xylose ... 54 0.014 1
(FD465405) LARWB51TR Haematobia irritans 1st Instar Larvae H... 54 0.014 1
(FD465404) LARWB51TF Haematobia irritans 1st Instar Larvae H... 54 0.014 1
(AM216565) Paracentrotus lividus EST, clone MPMGp1174D2235Q,... 40 0.018 2
(AM600352) Paracentrotus lividus EST, clone MPMGp1174B1472Q,... 40 0.019 2
(AM561186) Paracentrotus lividus EST, clone MPMGp1172G2097Q,... 40 0.020 2
(EJ614249) 1092963007285 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.023 2
(EJ613295) 1092963000565 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.025 2
(AM651087) Entamoeba moshkovskii FIC GSS, clone mosh086g07.p1k. 36 0.045 2
(CT768774) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.046 2
(AJ890364) Emiliania huxleyi virus 86 isolate EhV86. 52 0.057 1
(AP007155) Aspergillus oryzae RIB40 genomic DNA, SC003. 52 0.057 1
(EA082629) Sequence 4889 from patent US 7186513. 52 0.057 1
(AR675388) Sequence 4889 from patent US 6902887. 52 0.057 1
(ES335847) CTZ82-B02.x1d-t SHGC-CTZ Ostreococcus lucimarinus... 52 0.057 1
(ES331820) CTZ63-A10.x1d-t SHGC-CTZ Ostreococcus lucimarinus... 52 0.057 1
(BM173039) 900393 Avicennia marina leaf cDNA Library Avicenn... 52 0.057 1
(EY430167) ZY007283 Aspergillus oryzae EST Library Aspergill... 52 0.057 1
(DQ302773) Spizellomyces punctatus isolate AFTOL-ID 182 RNA ... 50 0.21 2
(AP006852) Candida albicans genomic DNA, chromosome 7, compl... 50 0.22 1
(EK103646) 1092963034909 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.22 1
(CS591986) Sequence 706 from Patent WO2007035650. 44 0.24 2
(CS591346) Sequence 66 from Patent WO2007035650. 44 0.24 2
(CS591342) Sequence 62 from Patent WO2007035650. 44 0.24 2
(EH216134) USDA-FP_178926 WHMH (pink hibiscus mealybug) Maco... 46 0.27 2
(EF091984) Maconellicoccus hirsutus clone WHMH2891 putative ... 46 0.29 2
(DQ364208) Conidiobolus thromboides strain ARSEF 70 RNA poly... 48 0.31 2
(DJ131793) Method for identification of useful proteins deri... 40 0.31 2
(EA378796) Sequence 27619 from patent US 7314974. 44 0.31 2
(EF392432) Conidiobolus thromboides strain ARSEF 115 RNA pol... 48 0.32 2
(AB006052) Neurospora crassa DNA for RNA polymerase I second... 44 0.58 2
(DW011100) w12l8_M13F Myzus persicae, tobacco lineage, whole... 38 0.64 2
(CX678594) ydc30a09.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.74 2
(CJ491542) Macaca fascicularis mRNA, clone: QtsA-19479, 5' e... 34 0.74 3
(AC214889) Procavia capensis clone CH280-328K21, WORKING DRA... 48 0.89 1
(AM676605) Entamoeba terrapinae GSS, clone terra121c08.p1k. 48 0.89 1
(EB495420) 1099435195650 12-DrosW-norm-1P5Kb Drosophila will... 48 0.89 1
(BJ340892) Dictyostelium discoideum cDNA clone:dda4e10, 3' e... 40 0.90 2
(AU264504) Dictyostelium discoideum vegetative cDNA clone:VS... 40 0.94 2

>(BJ436587) Dictyostelium discoideum cDNA clone:ddv31j14, 3' end,
single read.
Length = 715

Score = 1348 bits (680), Expect(2) = 0.0
Identities = 680/680 (100%)
Strand = Plus / Plus


Query: 65 tagtaatattaacagcagcaagttcagcaactaaataagtgaaaacgtaaggaattgaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 tagtaatattaacagcagcaagttcagcaactaaataagtgaaaacgtaaggaattgaaa 93


Query: 125 ttgtagcgattgaatcactggatttacaagatttacattcagaaacagtttgattggaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ttgtagcgattgaatcactggatttacaagatttacattcagaaacagtttgattggaat 153


Query: 185 aatcttttttagagtagattgtgagggtactaccacataatttacaaactttaatctttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aatcttttttagagtagattgtgagggtactaccacataatttacaaactttaatctttg 213


Query: 245 cgaaatcagaggatttcatgagacgatcattcaaacagaaactagcaccatgagccaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 cgaaatcagaggatttcatgagacgatcattcaaacagaaactagcaccatgagccaaaa 273


Query: 305 gggaatcacgttccatctcaccgaaacgaataccaccaccaaccttacgacctttaattg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gggaatcacgttccatctcaccgaaacgaataccaccaccaaccttacgacctttaattg 333


Query: 365 gttgacgagttaaagcattaactttaccgagagcacgtacttgatatttatctttaacca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gttgacgagttaaagcattaactttaccgagagcacgtacttgatatttatctttaacca 393


Query: 425 tatgacgtaatctttgatagtaacaaacaccgaaaaagatttcacattcaaattctttac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tatgacgtaatctttgatagtaacaaacaccgaaaaagatttcacattcaaattctttac 453


Query: 485 cagtggtaccactatacatttgttcattaccaaaacgattgaaacctgccttcgccaatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cagtggtaccactatacatttgttcattaccaaaacgattgaaacctgccttcgccaatt 513


Query: 545 gttcaccaaagaaatcgatggctgtattgttttcatcgaattggaaagcggtggcatctt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gttcaccaaagaaatcgatggctgtattgttttcatcgaattggaaagcggtggcatctt 573


Query: 605 ggaatttaccatggattgcaccagctttaccggctaaaatctctaccaacataccaatgg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggaatttaccatggattgcaccagctttaccggctaaaatctctaccaacataccaatgg 633


Query: 665 tcatacgtgatgggaaagcatttggattgataattacatctggtttcataccactttcag 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcatacgtgatgggaaagcatttggattgataattacatctggtttcataccactttcag 693


Query: 725 tgaatggcatattaatttct 744
||||||||||||||||||||
Sbjct: 694 tgaatggcatattaatttct 713

Score = 30.2 bits (15), Expect(2) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 48 actaacttgtaattt 62
|||||||||||||||
Sbjct: 18 actaacttgtaattt 32

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,392,107,066
Number of extensions: 75544516
Number of successful extensions: 5449783
Number of sequences better than 10.0: 174
Length of query: 1370
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1346
Effective length of database: 97,308,875,965
Effective search space: 130977747048890
Effective search space used: 130977747048890
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12284-1 (Contig-U12284-1Q) /CSM_Contig/Contig-U12284-1Q.Seq.d
(1370 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

FM992694_9(FM992694|pid:none) Candida dubliniensis CD36 chromoso... 270 1e-70
(Q9P7X8) RecName: Full=Probable DNA-directed RNA polymerase I su... 269 2e-70
AP006852_55(AP006852|pid:none) Candida albicans genomic DNA, chr... 269 2e-70
BC097040_1(BC097040|pid:none) Danio rerio zgc:66298, mRNA (cDNA ... 268 3e-70
AK022890_1(AK022890|pid:none) Homo sapiens cDNA FLJ12828 fis, cl... 266 2e-69
AK294027_1(AK294027|pid:none) Homo sapiens cDNA FLJ61223 complet... 266 2e-69
BC096748_1(BC096748|pid:none) Homo sapiens polymerase (RNA) I po... 266 2e-69
BC110833_1(BC110833|pid:none) Homo sapiens polymerase (RNA) I po... 266 2e-69
AK022533_1(AK022533|pid:none) Homo sapiens cDNA FLJ12471 fis, cl... 266 2e-69
(Q9H9Y6) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 266 2e-69
AE017346_399(AE017346|pid:none) Cryptococcus neoformans var. neo... 265 2e-69
BC148064_1(BC148064|pid:none) Bos taurus polymerase (RNA) I poly... 265 3e-69
(P70700) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 265 4e-69
AK143501_1(AK143501|pid:none) Mus musculus 8 cells embryo 8 cell... 263 8e-69
T20870(T20870) hypothetical protein F14B4.3 - Caenorhabditis ele... 262 2e-68
CR382131_402(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 261 3e-68
DQ914533_1(DQ914533|pid:none) Pichia pastoris strain GS115 RNA p... 261 3e-68
(Q5REE8) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 261 4e-68
BC059304_1(BC059304|pid:none) Xenopus laevis hypothetical protei... 261 5e-68
AM270222_64(AM270222|pid:none) Aspergillus niger contig An11c005... 259 2e-67
(Q75DS1) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 259 2e-67
JQ0354(JQ0354;S07025) DNA-directed RNA polymerase (EC 2.7.7.6) I... 258 5e-67
(P20028) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 258 5e-67
AC022455_2(AC022455|pid:none) Arabidopsis thaliana chromosome 1 ... 257 8e-67
(O74633) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 256 2e-66
(P22138) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 255 2e-66
AP008216_946(AP008216|pid:none) Oryza sativa (japonica cultivar-... 255 3e-66
AC068950_1(AC068950|pid:none) Oryza sativa chromosome 10 BAC OSJ... 255 3e-66
CR382122_255(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 254 4e-66
AK230187_1(AK230187|pid:none) Arabidopsis thaliana mRNA for puta... 254 5e-66
CU928171_723(CU928171|pid:none) Kluyveromyces thermotolerans str... 253 9e-66
AM920437_786(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 253 1e-65
CU633438_866(CU633438|pid:none) Podospora anserina genomic DNA c... 253 1e-65
CU928181_108(CU928181|pid:none) Zygosaccharomyces rouxii strain ... 252 3e-65
(P28365) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 249 2e-64
CP001574_301(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 232 3e-59
AL590443_43(AL590443|pid:none) chromosome III of strain GB-M1 of... 229 2e-58
AK025574_1(AK025574|pid:none) Homo sapiens cDNA: FLJ21921 fis, c... 223 2e-56
CP000582_239(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 216 2e-54
AM502243_63(AM502243|pid:none) Leishmania infantum chromosome 25. 212 2e-53
CR940353_301(CR940353|pid:none) Theileria annulata strain Ankara... 210 8e-53
CT005264_63(CT005264|pid:none) Leishmania major strain Friedlin,... 210 8e-53
AM494962_213(AM494962|pid:none) Leishmania braziliensis chromoso... 208 3e-52
(Q8SR75) RecName: Full=DNA-directed RNA polymerase II subunit RP... 203 1e-50
FN357367_16(FN357367|pid:none) Schistosoma mansoni genome sequen... 203 1e-50
FJ914623_1(FJ914623|pid:none) Epichloe festucae strain E2368 DNA... 199 1e-49
DQ499800_1(DQ499800|pid:none) Phaeosphaeria avenaria f. sp. trit... 197 6e-49
DQ499798_1(DQ499798|pid:none) Phaeosphaeria sp. S-93-48 RNA poly... 197 7e-49
DQ499810_1(DQ499810|pid:none) Phaeosphaeria avenaria f. sp. aven... 197 7e-49
BX284752_32(BX284752|pid:none) Neurospora crassa DNA linkage gro... 197 7e-49
DQ499813_1(DQ499813|pid:none) Phaeosphaeria avenaria f. sp. aven... 197 7e-49
CU928171_114(CU928171|pid:none) Kluyveromyces thermotolerans str... 197 7e-49
DQ278491_1(DQ278491|pid:none) Phaeosphaeria nodorum second large... 197 7e-49
AF083031_74(AF083031|pid:none) Guillardia theta nucleomorph chro... 196 1e-48
(Q753Q4) RecName: Full=DNA-directed RNA polymerase II subunit RP... 196 1e-48
CP000505_286(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 196 2e-48
(Q6FLD5) RecName: Full=DNA-directed RNA polymerase II subunit RP... 195 3e-48
BX537447_1(BX537447|pid:none) Homo sapiens mRNA; cDNA DKFZp686D1... 195 4e-48
U00050_9(U00050|pid:none) Caenorhabditis elegans cosmid F09F7, c... 194 5e-48
(A5DHT2) RecName: Full=DNA-directed RNA polymerase II subunit RP... 194 5e-48
T16011(T16011)hypothetical protein F09F7.3 - Caenorhabditis eleg... 194 5e-48
CU928176_503(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 194 8e-48
CP001324_413(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 193 1e-47
CR926474_1(CR926474|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1... 192 2e-47
AY092084_1(AY092084|pid:none) Homo sapiens RNA polymerase III su... 192 2e-47
AK122713_1(AK122713|pid:none) Homo sapiens cDNA FLJ16205 fis, cl... 192 2e-47
(Q60181) RecName: Full=DNA-directed RNA polymerase subunit B'; ... 192 2e-47
AJ437580_1(AJ437580|pid:none) Trypanosoma brucei brucei mRNA for... 192 3e-47
CP000562_298(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 192 3e-47
CP000581_176(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 192 3e-47
CR954201_170(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 191 4e-47
DQ029103_1(DQ029103|pid:none) Spirogyra sp. UWCC FW670 RNA polym... 191 4e-47
AK001161_1(AK001161|pid:none) Homo sapiens cDNA FLJ10299 fis, cl... 191 7e-47
FN357318_14(FN357318|pid:none) Schistosoma mansoni genome sequen... 191 7e-47
AP008209_2128(AP008209|pid:none) Oryza sativa (japonica cultivar... 191 7e-47
A71032(A71032) probable DNA-directed RNA polymerase subunit B - ... 190 9e-47
AM494957_409(AM494957|pid:none) Leishmania braziliensis chromoso... 190 9e-47
X05709_1(X05709|pid:none) Drosophila DmRP140 gene for RNA polyme... 190 1e-46
AC135796_19(AC135796|pid:none) Medicago truncatula clone mth2-28... 190 1e-46
BC166377_1(BC166377|pid:none) Xenopus tropicalis hypothetical pr... 190 1e-46
AE009441_442(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,... 190 1e-46
AF339907_1(AF339907|pid:none) Leishmania major DNA-directed RNA ... 190 1e-46
CT005259_1(CT005259|pid:none) Leishmania major strain Friedlin, ... 190 1e-46
(Q54J75) RecName: Full=DNA-directed RNA polymerase II subunit rp... 190 1e-46
DQ058628_1(DQ058628|pid:none) Rhododendron macrophyllum RNA poly... 189 2e-46
AF165818_28(AF165818|pid:none) Guillardia theta nucleomorph chro... 189 2e-46
CP000504_697(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 189 2e-46
DQ020638_1(DQ020638|pid:none) Petunia x hybrida RNA polymerase I... 189 2e-46
CP001014_1920(CP001014|pid:none) Thermoproteus neutrophilus V24S... 189 3e-46
BT068015_1(BT068015|pid:none) Zea mays full-length cDNA clone ZM... 188 3e-46
CP000559_1153(CP000559|pid:none) Methanocorpusculum labreanum Z,... 188 3e-46
DQ020640_1(DQ020640|pid:none) Nicotiana sylvestris RNA polymeras... 188 3e-46
DQ020637_1(DQ020637|pid:none) Antirrhinum majus RNA polymerase I... 188 4e-46
AE009950_1564(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c... 188 4e-46
Z19121_1(Z19121|pid:none) A.thaliana gene for RNA polymerase II ... 187 6e-46
Z19120_1(Z19120|pid:none) A.thaliana mRNA for RNA polymerase II ... 187 6e-46
DQ020641_1(DQ020641|pid:none) Petunia x hybrida RNA polymerase I... 187 6e-46
CU633454_208(CU633454|pid:none) Podospora anserina genomic DNA c... 187 6e-46
DQ020642_1(DQ020642|pid:none) Antirrhinum majus RNA polymerase I... 187 6e-46
DQ058637_1(DQ058637|pid:none) Linanthus californicus RNA polymer... 187 8e-46
BA000011_1208(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 187 8e-46
CP000968_1509(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 187 1e-45
DQ058627_1(DQ058627|pid:none) Rhododendron macrophyllum RNA poly... 187 1e-45
CP000493_1513(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 187 1e-45
CR380958_114(CR380958|pid:none) Candida glabrata strain CBS138 c... 187 1e-45
CP000780_1924(CP000780|pid:none) Candidatus Methanoregula boonei... 186 1e-45
CR382139_993(CR382139|pid:none) Debaryomyces hansenii strain CBS... 186 1e-45
BT059230_1(BT059230|pid:none) Salmo salar clone ssal-rgf-535-090... 186 2e-45
CR382126_43(CR382126|pid:none) Kluyveromyces lactis strain NRRL ... 186 2e-45
(Q10578) RecName: Full=DNA-directed RNA polymerase II subunit RP... 186 2e-45
(P22276) RecName: Full=DNA-directed RNA polymerase III subunit R... 186 2e-45
M38723_2(M38723|pid:none) Saccharomyces cerevisiae tyrosine phos... 186 2e-45
CR940353_306(CR940353|pid:none) Theileria annulata strain Ankara... 186 2e-45
CP001338_2062(CP001338|pid:none) Candidatus Methanosphaerula pal... 186 2e-45
AF064612_1(AF064612|pid:none) Chironia linoides RNA polymerase I... 185 3e-45
AY121645_1(AY121645|pid:none) Drosophila melanogaster LD14594 fu... 185 3e-45
AF107797_1(AF107797|pid:none) Capronia mansonii DNA-dependent RN... 185 3e-45
CR936257_56(CR936257|pid:none) Natronomonas pharaonis DSM 2160 c... 185 3e-45
RNFF32(S16894) DNA-directed RNA polymerase (EC 2.7.7.6) III seco... 185 3e-45
CU928168_404(CU928168|pid:none) Kluyveromyces thermotolerans str... 185 3e-45
AY485615_1(AY485615|pid:none) Candida tropicalis DNA-dependent R... 185 3e-45
CP000855_219(CP000855|pid:none) Thermococcus onnurineus NA1, com... 185 4e-45
CP000254_48(CP000254|pid:none) Methanospirillum hungatei JF-1, c... 185 4e-45
DQ056143_29(DQ056143|pid:none) Coprinellus disseminatus strain C... 184 5e-45
S70415(S70415) DNA-directed RNA polymerase (EC 2.7.7.6) II secon... 184 5e-45
FN357450_60(FN357450|pid:none) Schistosoma mansoni genome sequen... 184 5e-45
(O27124) RecName: Full=DNA-directed RNA polymerase subunit B'; ... 184 6e-45
(P15351) RecName: Full=DNA-directed RNA polymerase subunit B'; ... 184 6e-45
AP006878_1084(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 184 6e-45
AB433782_3(AB433782|pid:none) Haloarcula japonica rpoH, rpoB'', ... 184 6e-45
BC038472_1(BC038472|pid:none) Mus musculus polymerase (RNA) II (... 184 6e-45
(P30876) RecName: Full=DNA-directed RNA polymerase II subunit RP... 184 6e-45
AK294901_1(AK294901|pid:none) Homo sapiens cDNA FLJ61678 complet... 184 6e-45
BC142267_1(BC142267|pid:none) Bos taurus polymerase (RNA) II (DN... 184 6e-45
AK299090_1(AK299090|pid:none) Homo sapiens cDNA FLJ59391 complet... 184 6e-45
FN392322_236(FN392322|pid:none) Pichia pastoris GS115 chromosome... 184 8e-45
AE017349_40(AE017349|pid:none) Cryptococcus neoformans var. neof... 184 8e-45
AY485613_1(AY485613|pid:none) Pichia guilliermondii DNA-dependen... 184 8e-45
CR954201_604(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 183 1e-44
AF107787_1(AF107787|pid:none) Candida albicans DNA-dependent RNA... 183 1e-44
AM910986_43(AM910986|pid:none) Plasmodium knowlesi strain H chro... 183 1e-44
AE016817_126(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 183 1e-44
DQ011642_1(DQ011642|pid:none) Antirrhinum majus RNA polymerase I... 183 1e-44
AE017344_345(AE017344|pid:none) Cryptococcus neoformans var. neo... 183 1e-44
(Q03587) RecName: Full=DNA-directed RNA polymerase subunit B; ... 182 2e-44
CP000477_28(CP000477|pid:none) Methanosaeta thermophila PT, comp... 182 2e-44
CP001398_1927(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 182 2e-44
DQ020636_1(DQ020636|pid:none) Nicotiana sylvestris RNA polymeras... 182 2e-44
AC118134_7(AC118134|pid:none) Oryza sativa chromosome 3 BAC OSJN... 182 3e-44
DQ000671_1(DQ000671|pid:none) Zea mays RNA polymerase IV second ... 182 3e-44
AE001362_148(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 182 3e-44
AM920436_1268(AM920436|pid:none) Penicillium chrysogenum Wiscons... 181 4e-44
AF265351_1(AF265351|pid:none) Sus scrofa DNA-directed RNA polyme... 181 5e-44
(Q7T6X7) RecName: Full=DNA-directed RNA polymerase subunit 2; ... 181 5e-44
AP007151_734(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 181 7e-44
AL606455_6(AL606455|pid:none) Oryza sativa genomic DNA, chromoso... 180 1e-43
AP008210_2054(AP008210|pid:none) Oryza sativa (japonica cultivar... 180 1e-43
D13337_1(D13337|pid:none) Schizosaccharomyces pombe rpb2 gene fo... 179 2e-43
AL138854_1(AL138854|pid:none) S.pombe chromosome I cosmid c23G3.... 179 2e-43
AE014188_66(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 177 6e-43
CP000816_649(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 177 8e-43
BX950229_1362(BX950229|pid:none) Methanococcus maripaludis strai... 177 8e-43
CP000609_215(CP000609|pid:none) Methanococcus maripaludis C5, co... 177 8e-43
AJ890364_438(AJ890364|pid:none) Emiliania huxleyi virus 86 isola... 177 1e-42
AL355926_1(AL355926|pid:none) Neurospora crassa DNA linkage grou... 177 1e-42
CP000867_1298(CP000867|pid:none) Methanococcus maripaludis C6, c... 177 1e-42
EU016603_2(EU016603|pid:none) Uncultured marine microorganism HF... 176 1e-42
AP008214_347(AP008214|pid:none) Oryza sativa (japonica cultivar-... 175 3e-42
AB012240_1(AB012240|pid:none) Arabidopsis thaliana genomic DNA, ... 175 3e-42
AP005606_12(AP005606|pid:none) Oryza sativa Japonica Group genom... 175 3e-42
FJ515667_1(FJ515667|pid:none) Sulfolobus shibatae B12 RNA polyme... 175 4e-42
AM910995_54(AM910995|pid:none) Plasmodium knowlesi strain H chro... 174 5e-42
AB295632_1(AB295632|pid:none) Natrialba hulunbeirensis rpoB' gen... 174 5e-42
AE006641_201(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 174 7e-42
AF107793_1(AF107793|pid:none) Emericella nidulans DNA-dependent ... 174 7e-42
AJ809522_1(AJ809522|pid:none) Natrialba asiatica partial rpoB ge... 174 7e-42
AF064610_1(AF064610|pid:none) Mostuea brunonis RNA polymerase II... 174 9e-42
AB295633_1(AB295633|pid:none) Natrialba magadii rpoB' gene for D... 174 9e-42
AY303171_23(AY303171|pid:none) Solanum bulbocastanum chromosome ... 173 1e-41
AJ133231_1(AJ133231|pid:none) Strychnos potatorum rpb2-d gene, p... 173 1e-41
CP001576_191(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 173 1e-41
CP000682_33(CP000682|pid:none) Metallosphaera sedula DSM 5348, c... 173 1e-41
AB295631_1(AB295631|pid:none) Natrialba chahannaoensis rpoB' gen... 173 1e-41
AB295635_1(AB295635|pid:none) Natronococcus occultus rpoB' gene ... 173 1e-41
CP000300_1077(CP000300|pid:none) Methanococcoides burtonii DSM 6... 173 1e-41
CP001403_1949(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 173 1e-41
AY548894_2(AY548894|pid:none) Antonospora locustae hypothetical ... 172 2e-41
AF064611_1(AF064611|pid:none) Periploca graeca RNA polymerase II... 172 2e-41
AB295637_1(AB295637|pid:none) Natronolimnobius baerhuensis rpoB'... 172 3e-41
AJ133219_1(AJ133219|pid:none) Stephanotis floribunda rpb2-d gene... 172 3e-41
AJ133233_1(AJ133233|pid:none) Usteria guineensis rpb2-d gene, pa... 172 3e-41
AJ133218_1(AJ133218|pid:none) Alstonia scholaris rpb2-d gene, pa... 172 3e-41
AJ133227_1(AJ133227|pid:none) Logania vaginalis rpb2-d gene, par... 172 3e-41
AJ133239_1(AJ133239|pid:none) Pinckneya pubescens rpb2-d gene, p... 172 3e-41
AJ133236_1(AJ133236|pid:none) Mussaenda erythrophylla rpb2-d gen... 172 3e-41
AJ809519_1(AJ809519|pid:none) Halosimplex carlsbadense partial r... 172 3e-41
AJ556176_1(AJ556176|pid:none) Vicia sativa partial rpb2 gene for... 172 3e-41
AJ809511_1(AJ809511|pid:none) Halobiforma haloterrestris partial... 171 4e-41
AJ133226_1(AJ133226|pid:none) Gardneria angustifolia rpb2-d gene... 171 4e-41
AJ133240_1(AJ133240|pid:none) Rondeletia odorata rpb2-d gene, pa... 171 4e-41
AJ809524_1(AJ809524|pid:none) Natronobacterium gregoryi partial ... 171 6e-41
AJ133235_1(AJ133235|pid:none) Gardenia thunbergia rpb2-d gene, p... 171 7e-41
AB295626_1(AB295626|pid:none) Halobiforma lacisalsi rpoB' gene f... 171 7e-41
AF083031_50(AF083031|pid:none) Guillardia theta nucleomorph chro... 171 7e-41
AJ133214_1(AJ133214|pid:none) Buddleja asiatica rpb2-d gene, par... 171 7e-41
AK176111_1(AK176111|pid:none) Arabidopsis thaliana mRNA for puta... 170 1e-40
AB295634_1(AB295634|pid:none) Natronococcus amylolyticus rpoB' g... 170 1e-40
AM502249_16(AM502249|pid:none) Leishmania infantum chromosome 31. 170 1e-40
CP001399_1861(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 170 1e-40
CT005268_16(CT005268|pid:none) Leishmania major strain Friedlin,... 170 1e-40
AJ133238_1(AJ133238|pid:none) Ophiorrhiza mungos rpb2-d gene, pa... 170 1e-40
AJ133217_1(AJ133217|pid:none) Peltanthera floribunda rpb2-d gene... 170 1e-40
AJ565934_1(AJ565934|pid:none) Solanum lycopersicon partial rpb2 ... 170 1e-40
AJ565937_1(AJ565937|pid:none) Mimulus guttatus partial rpb2 gene... 170 1e-40
AJ556177_1(AJ556177|pid:none) Vicia sativa partial rpb2 gene for... 170 1e-40
AB295624_1(AB295624|pid:none) Natrinema versiforme rpoB' gene fo... 170 1e-40
AJ133225_1(AJ133225|pid:none) Antonia ovata rpb2-d gene, partial. 169 2e-40
AB295630_1(AB295630|pid:none) Halorubrum vacuolatum rpoB' gene f... 169 2e-40
DQ011644_1(DQ011644|pid:none) Lunularia cruciata RNA polymerase ... 169 2e-40
AB020749_6(AB020749|pid:none) Arabidopsis thaliana genomic DNA, ... 169 2e-40
AJ809523_1(AJ809523|pid:none) Natrinema pallidum partial rpoB ge... 169 2e-40
AJ133221_1(AJ133221|pid:none) Gelsemium sempervirens rpb2-d gene... 169 3e-40
AJ133237_1(AJ133237|pid:none) Oldenlandia corymbosa rpb2-d gene,... 169 3e-40
AF064614_1(AF064614|pid:none) Mostuea brunonis RNA polymerase II... 169 3e-40
AJ133215_1(AJ133215|pid:none) Retzia capensis rpb2-d gene, parti... 169 3e-40
AF510641_1(AF510641|pid:none) Giardia intestinalis RNA polymeras... 168 4e-40
AJ133216_1(AJ133216|pid:none) Sanango racemosum rpb2-d gene, par... 168 4e-40
AF064613_1(AF064613|pid:none) Kopsia fruticosa RNA polymerase II... 168 4e-40
AJ809529_1(AJ809529|pid:none) Halococcus morrhuae partial rpoB g... 168 4e-40
AB295627_1(AB295627|pid:none) Natronorubrum bangense rpoB' gene ... 168 4e-40
AB295625_1(AB295625|pid:none) Halobiforma nitratireducens rpoB' ... 166 1e-39
AJ809513_1(AJ809513|pid:none) Haloferax denitrificans partial rp... 165 3e-39
AJ809515_1(AJ809515|pid:none) Halogeometricum borinquense partia... 165 3e-39
AJ809514_1(AJ809514|pid:none) Haloferax mediterranei partial rpo... 164 7e-39
AB295629_1(AB295629|pid:none) Haloferax sp. BV2 rpoB' gene for D... 164 9e-39
DQ011646_1(DQ011646|pid:none) Psilotum nudum RNA polymerase IV s... 164 9e-39
AJ809510_1(AJ809510|pid:none) Halobaculum gomorrense partial rpo... 162 2e-38
DQ358892_1(DQ358892|pid:none) Rubia tinctorum RNA polymerase II ... 161 5e-38
DQ358893_1(DQ358893|pid:none) Calycophyllum candidissimum RNA po... 161 5e-38
DQ358896_1(DQ358896|pid:none) Guettarda uruguensis RNA polymeras... 161 6e-38
DQ358895_1(DQ358895|pid:none) Ixora parviflora RNA polymerase II... 161 6e-38
S04716(S04716) DNA-directed RNA polymerase (EC 2.7.7.6) chain B ... 160 1e-37
EF222315_1(EF222315|pid:none) Beauveria bassiana strain ARSEF 15... 160 1e-37
DQ158857_96(DQ158857|pid:none) Bigelowiella natans nucleomorph c... 159 2e-37
AY815953_1(AY815953|pid:none) Schistosoma japonicum SJCHGC09486 ... 158 4e-37
DQ358889_1(DQ358889|pid:none) Alstonia scholaris RNA polymerase ... 158 4e-37
AJ133230_1(AJ133230|pid:none) Neuburgia corynocarpum rpb2-d gene... 158 5e-37
DQ029108_1(DQ029108|pid:none) Psilotum nudum RNA polymerase II s... 158 5e-37
AL833780_8(AL833780|pid:none) Mouse DNA sequence from clone RP23... 157 1e-36
DQ358888_1(DQ358888|pid:none) Gentiana lutea RNA polymerase II (... 155 2e-36
AY521625_73(AY521625|pid:none) Singapore grouper iridovirus, com... 155 4e-36
DQ358891_1(DQ358891|pid:none) Bouvardia glaberrima RNA polymeras... 153 1e-35
DQ011648_1(DQ011648|pid:none) Sphagnum sp. JL-2005 RNA polymeras... 153 1e-35
DQ011647_1(DQ011647|pid:none) Selaginella erythropus RNA polymer... 152 3e-35
AY150217_44(AY150217|pid:none) Ambystoma tigrinum stebbensi viru... 151 5e-35
AF397202_1(AF397202|pid:none) Regina ranavirus clone PstI-3.8 LC... 150 8e-35
AY548484_63(AY548484|pid:none) Frog virus 3, complete genome. 148 5e-34
EF133465_63(EF133465|pid:none) Heliothis virescens ascovirus 3e,... 145 3e-33
AE014186_339(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 144 6e-33
AY380826_25(AY380826|pid:none) Lymphocystis disease virus - isol... 142 3e-32
AJ563602_1(AJ563602|pid:none) Garrya elliptica partial rpb2 gene... 140 1e-31
AF371960_34(AF371960|pid:none) Infectious spleen and kidney necr... 140 1e-31
AF107801_1(AF107801|pid:none) Mycosphaerella citrullina DNA-depe... 139 2e-31
AY532606_33(AY532606|pid:none) Rock bream iridovirus strain RBIV... 138 4e-31
AY786065_1(AY786065|pid:none) Strobilomyces floccopus RNA polyme... 138 5e-31
AY894343_36(AY894343|pid:none) Orange-spotted grouper iridovirus... 138 5e-31
DQ020659_1(DQ020659|pid:none) Chlamydomonas reinhardtii RNA poly... 137 7e-31
DQ302779_1(DQ302779|pid:none) Conidiobolus coronatus isolate AFT... 137 9e-31
DQ302778_1(DQ302778|pid:none) Entomophthora muscae isolate AFTOL... 137 1e-30
(P0C8K4) RecName: Full=DNA-directed RNA polymerase subunit 2; ... 137 1e-30
(P0C8K3) RecName: Full=DNA-directed RNA polymerase subunit 2; ... 137 1e-30
AM712240_53(AM712240|pid:none) African swine fever virus OURT 88... 136 2e-30
AF107803_1(AF107803|pid:none) Curvularia brachyspora DNA-depende... 136 2e-30
DQ011649_1(DQ011649|pid:none) Solanum lycopersicum RNA polymeras... 136 2e-30
DQ302781_1(DQ302781|pid:none) Glomus mosseae isolate AFTOL-ID 13... 136 2e-30
DQ302791_1(DQ302791|pid:none) Rozella allomycis isolate AFTOL-ID... 135 3e-30
AY495590_1(AY495590|pid:none) Botryotinia fuckeliana RNA polymer... 135 3e-30
DQ029104_1(DQ029104|pid:none) Chara australis RNA polymerase II ... 135 3e-30
AM712239_54(AM712239|pid:none) African swine fever virus Benin 9... 135 5e-30
AY485625_1(AY485625|pid:none) Melanomma radicans DNA-dependent R... 134 8e-30
AY485626_1(AY485626|pid:none) Mycosphaerella punctiformis DNA-de... 133 2e-29
DQ158858_47(DQ158858|pid:none) Bigelowiella natans nucleomorph c... 132 3e-29
DQ302786_1(DQ302786|pid:none) Rhizophlyctis rosea isolate AFTOL-... 132 3e-29
AY485619_1(AY485619|pid:none) Cryphonectria parasitica DNA-depen... 132 4e-29
DQ302780_1(DQ302780|pid:none) Scutellospora heterogama isolate A... 131 5e-29
AF107805_1(AF107805|pid:none) Sporormiella minima DNA-dependent ... 131 5e-29
DQ302775_1(DQ302775|pid:none) Dimargaris bacillispora isolate AF... 131 7e-29
AF107792_1(AF107792|pid:none) Microascus trigonosporus DNA-depen... 130 1e-28
DQ302787_1(DQ302787|pid:none) Umbelopsis ramanniana isolate AFTO... 130 1e-28
AF107802_1(AF107802|pid:none) Botryosphaeria rhodina DNA-depende... 130 1e-28
DQ302784_1(DQ302784|pid:none) Mortierella verticillata isolate A... 130 1e-28
DQ302792_1(DQ302792|pid:none) Synchytrium macrosporum isolate AF... 129 2e-28
AY566614_1(AY566614|pid:none) Akebia longeracemosa RNA polymeras... 129 3e-28
AY566619_1(AY566619|pid:none) Antirrhinum majus RNA polymerase I... 129 3e-28
AF107800_1(AF107800|pid:none) Dothidea insculpta DNA-dependent R... 129 3e-28
AJ565859_1(AJ565859|pid:none) Valeriana officinalis partial rpb2... 128 4e-28
DQ302785_1(DQ302785|pid:none) Rhopalomyces elegans isolate AFTOL... 128 4e-28
DQ302793_1(DQ302793|pid:none) Rhizophydium macroporosum isolate ... 128 6e-28
AY563266_1(AY563266|pid:none) Sequoia sempervirens RNA polymeras... 127 9e-28
AF107790_1(AF107790|pid:none) Podospora anserina DNA-dependent R... 127 9e-28
DQ408123_1(DQ408123|pid:none) Spongipellis pachyodon isolate AFT... 127 9e-28
AY563268_1(AY563268|pid:none) Dioscorea sansibarensis RNA polyme... 126 2e-27
DQ011154_137(DQ011154|pid:none) Monkeypox virus strain Congo_200... 126 2e-27
DQ302773_1(DQ302773|pid:none) Spizellomyces punctatus isolate AF... 126 2e-27
DQ302782_1(DQ302782|pid:none) Smittium culisetae isolate AFTOL-I... 126 2e-27
AJ557133_1(AJ557133|pid:none) Borago officinalis partial rpb2 ge... 126 2e-27
AY603973_130(AY603973|pid:none) Monkeypox virus strain MPXV-WRAI... 126 2e-27
(P33811) RecName: Full=DNA-directed RNA polymerase 132 kDa polyp... 125 3e-27
DQ437580_133(DQ437580|pid:none) Variola virus strain Afghanistan... 125 3e-27
DQ441416_135(DQ441416|pid:none) Variola virus strain Benin, Daho... 125 3e-27
EF193041_1(EF193041|pid:none) Cowpox virus strain Austria 1999_8... 125 3e-27
DQ011645_1(DQ011645|pid:none) Lycopodium sp. JL-2005 RNA polymer... 125 3e-27
AY485609_1(AY485609|pid:none) Amanita phalloides DNA-dependent R... 125 3e-27
(Q80DV1) RecName: Full=DNA-directed RNA polymerase 132 kDa polyp... 125 3e-27
AY485610_1(AY485610|pid:none) Aspergillus fumigatus DNA-dependen... 125 4e-27
AF409138_117(AF409138|pid:none) Lumpy skin disease virus isolate... 125 4e-27
AJ557134_1(AJ557134|pid:none) Borago officinalis partial rpb2 ge... 125 4e-27
DQ377805_2(DQ377805|pid:none) Squirrelpox virus 1296/99, partial... 125 4e-27
AF325528_116(AF325528|pid:none) Lumpy skin disease virus NI-2490... 125 4e-27
AF107786_1(AF107786|pid:none) Neolecta vitellina DNA-dependent R... 125 4e-27
(Q775Q3) RecName: Full=DNA-directed RNA polymerase 132 kDa polyp... 125 4e-27
DQ302774_1(DQ302774|pid:none) Cladochytrium replicatum isolate A... 125 4e-27
(P16716) RecName: Full=DNA-directed RNA polymerase 132 kDa polyp... 125 5e-27
AF107785_1(AF107785|pid:none) Agaricus bisporus DNA-dependent RN... 125 5e-27
(P17474) RecName: Full=DNA-directed RNA polymerase 132 kDa polyp... 124 6e-27
EU410304_199(EU410304|pid:none) Vaccinia virus GLV-1h68, complet... 124 6e-27
DQ066533_1(DQ066533|pid:none) Cowpox virus isolate CPV91_ger3 RN... 124 6e-27
DQ302769_1(DQ302769|pid:none) Batrachochytrium dendrobatidis iso... 124 6e-27
(Q6RZF8) RecName: Full=DNA-directed RNA polymerase 132 kDa polyp... 124 6e-27
AM501482_151(AM501482|pid:none) Vaccinia virus Ankara strain cho... 124 6e-27
DQ439815_152(DQ439815|pid:none) Vaccinia virus strain DUKE, comp... 124 6e-27
AF107807_1(AF107807|pid:none) Leotia viscosa DNA-dependent RNA p... 124 1e-26
AJ556165_1(AJ556165|pid:none) Fagonia lahovarii partial rpb2 gen... 124 1e-26
AF107796_1(AF107796|pid:none) Exophiala jeanselmei DNA-dependent... 124 1e-26
AF107808_1(AF107808|pid:none) Sclerotinia sclerotiorum DNA-depen... 123 1e-26
AY485638_1(AY485638|pid:none) Aureobasidium pullulans DNA-depend... 122 4e-26
AY485618_1(AY485618|pid:none) Coccodinium bartschii DNA-dependen... 122 4e-26
AY699208_1(AY699208|pid:none) Cunninghamia lanceolata RNA polyme... 121 5e-26
AJ629279_1(AJ629279|pid:none) Agrostemma githago partial rpa2 ge... 121 5e-26
AY318871_263(AY318871|pid:none) Canarypox virus strain ATCC VR-1... 121 7e-26
AY699218_1(AY699218|pid:none) Drimys winteri RNA polymerase II s... 121 7e-26
AY699223_1(AY699223|pid:none) Musa velutina RNA polymerase II se... 120 9e-26
AF107798_1(AF107798|pid:none) Capronia pilosella DNA-dependent R... 120 9e-26
AJ634168_1(AJ634168|pid:none) Silene keiskei partial rpa2 gene f... 120 9e-26
AF410153_113(AF410153|pid:none) Swinepox virus isolate 17077-99,... 120 1e-25
AY780941_1(AY780941|pid:none) Climacodon septentrionalis isolate... 120 1e-25
AY699219_1(AY699219|pid:none) Asarum caudatum RNA polymerase II ... 120 1e-25
DQ408120_1(DQ408120|pid:none) Polyporus squamosus isolate AFTOL-... 120 2e-25
AJ634169_1(AJ634169|pid:none) Silene keiskei partial rpa2 gene f... 119 2e-25
DQ408118_1(DQ408118|pid:none) Laetiporus sulphureus isolate AFTO... 119 3e-25
DQ408121_1(DQ408121|pid:none) Pycnoporus sp. ZW02.30 RNA polymer... 119 3e-25
AY699182_1(AY699182|pid:none) Psilotum nudum RNA polymerase II s... 119 3e-25
AY786057_1(AY786057|pid:none) Grifola frondosa RNA polymerase II... 118 4e-25
AY786056_1(AY786056|pid:none) Fomitopsis pinicola RNA polymerase... 118 4e-25
DQ158857_44(DQ158857|pid:none) Bigelowiella natans nucleomorph c... 118 4e-25
AJ565936_1(AJ565936|pid:none) Solanum lycopersicon partial rpb2 ... 118 6e-25
AY786059_1(AY786059|pid:none) Hygrophoropsis aurantiaca RNA poly... 118 6e-25
AY689437_123(AY689437|pid:none) Deerpox virus W-1170-84, complet... 117 1e-24
EF420156_120(EF420156|pid:none) Tanapox virus isolate TPV-Kenya,... 117 1e-24
(Q18CF1) RecName: Full=DNA-directed RNA polymerase subunit beta;... 117 1e-24
(Q9J544) RecName: Full=DNA-directed RNA polymerase 132 kDa polyp... 115 4e-24
CP000976_375(CP000976|pid:none) Borrelia duttonii Ly, complete g... 114 8e-24
CP000993_366(CP000993|pid:none) Borrelia recurrentis A1, complet... 114 8e-24
CP000048_372(CP000048|pid:none) Borrelia hermsii DAH, complete g... 114 1e-23
AX885837_1(AX885837|pid:none) Sequence 1700 from Patent EP1033401. 113 1e-23
CP001102_1285(CP001102|pid:none) Candidatus Amoebophilus asiatic... 113 1e-23
T30731(T30731) probable DNA-directed RNA polymerase (EC 2.7.7.6)... 112 2e-23
AY780934_1(AY780934|pid:none) Coprinus comatus isolate AFTOL-ID ... 112 3e-23
DQ408116_1(DQ408116|pid:none) Ganoderma tsugae isolate AFTOL-ID ... 112 3e-23
AY786066_1(AY786066|pid:none) Suillus pictus RNA polymerase II s... 112 3e-23
AY780940_1(AY780940|pid:none) Clavaria zollingeri isolate AFTOL-... 111 5e-23
DQ366282_1(DQ366282|pid:none) Coniophora arida isolate AFTOL-ID ... 111 5e-23
(O83269) RecName: Full=DNA-directed RNA polymerase subunit beta;... 111 7e-23
(Q661M9) RecName: Full=DNA-directed RNA polymerase subunit beta;... 111 7e-23
(Q2S1Q5) RecName: Full=DNA-directed RNA polymerase subunit beta;... 110 9e-23
CP000159_1718(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 110 9e-23
CP001098_107(CP001098|pid:none) Halothermothrix orenii H 168, co... 110 9e-23
(Q0SQD6) RecName: Full=DNA-directed RNA polymerase subunit beta;... 110 2e-22
CP001251_913(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 109 2e-22
AY485365_2(AY485365|pid:none) Flavobacterium psychrophilum putat... 109 2e-22
AY563264_1(AY563264|pid:none) Selaginella densa RNA polymerase I... 109 3e-22
(Q04C22) RecName: Full=DNA-directed RNA polymerase subunit beta;... 108 3e-22
(Q0SNB8) RecName: Full=DNA-directed RNA polymerase subunit beta;... 108 3e-22
(Q1GBM5) RecName: Full=DNA-directed RNA polymerase subunit beta;... 108 3e-22
(Q59191) RecName: Full=DNA-directed RNA polymerase subunit beta;... 108 3e-22
(A1BD23) RecName: Full=DNA-directed RNA polymerase subunit beta;... 108 6e-22
(P47767) RecName: Full=DNA-directed RNA polymerase subunit beta;... 107 1e-21
(Q03EA9) RecName: Full=DNA-directed RNA polymerase subunit beta;... 107 1e-21
CP000817_4428(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 107 1e-21
BT060823_1(BT060823|pid:none) Zea mays full-length cDNA clone ZM... 107 1e-21
(A6LE81) RecName: Full=DNA-directed RNA polymerase subunit beta;... 107 1e-21
(Q5FM97) RecName: Full=DNA-directed RNA polymerase subunit beta;... 107 1e-21
(Q38UQ2) RecName: Full=DNA-directed RNA polymerase subunit beta;... 107 1e-21
(A5FIJ3) RecName: Full=DNA-directed RNA polymerase subunit beta;... 107 1e-21
CP001108_279(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 106 2e-21
(Q5HRL0) RecName: Full=DNA-directed RNA polymerase subunit beta;... 106 2e-21
CP001147_1302(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 106 2e-21
AF325871_1(AF325871|pid:none) Staphylococcus saccharolyticus RNA... 106 2e-21
(Q8RHI6) RecName: Full=DNA-directed RNA polymerase subunit beta;... 106 2e-21
CP001337_2622(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 106 2e-21
(Q74L95) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 3e-21
(Q6F0L7) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 3e-21
(Q046D2) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 3e-21
(A6QEJ4) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 4e-21
(Q4L3K3) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 4e-21
(Q932F8) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 4e-21
(Q6GJC6) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 4e-21
(A5IQ96) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 4e-21
(Q5HID3) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 4e-21
CP000253_488(CP000253|pid:none) Staphylococcus aureus subsp. aur... 105 4e-21
FM177140_2615(FM177140|pid:none) Lactobacillus casei BL23 comple... 105 5e-21
CP001056_201(CP001056|pid:none) Clostridium botulinum B str. Ekl... 105 5e-21
DQ489736_1542(DQ489736|pid:none) Leuconostoc citreum KM20, compl... 105 5e-21
DQ302766_1(DQ302766|pid:none) Coelomomyces stegomyiae isolate AF... 105 5e-21
(Q034X0) RecName: Full=DNA-directed RNA polymerase subunit beta;... 105 5e-21
CP001393_753(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 104 7e-21
AF020844_1(AF020844|pid:none) Marchantia polymorpha RPB140 (RPB2... 104 7e-21
CP000804_1552(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 104 7e-21
(Q88XZ3) RecName: Full=DNA-directed RNA polymerase subunit beta;... 104 9e-21
AY699193_1(AY699193|pid:none) Macrozamia moorei RNA polymerase I... 104 9e-21
AY699204_1(AY699204|pid:none) Saxegothaea conspicua RNA polymera... 104 9e-21
AP010656_6(AP010656|pid:none) Candidatus Azobacteroides pseudotr... 104 9e-21
(Q6MRX6) RecName: Full=DNA-directed RNA polymerase subunit beta;... 104 9e-21
AF325870_1(AF325870|pid:none) Staphylococcus lugdunensis RNA pol... 104 9e-21
AY699201_1(AY699201|pid:none) Araucaria araucana RNA polymerase ... 104 9e-21
AY699213_1(AY699213|pid:none) Metasequoia glyptostroboides RNA p... 104 9e-21
AY699209_1(AY699209|pid:none) Cephalotaxus fortunei RNA polymera... 104 9e-21
AY780933_1(AY780933|pid:none) Agaricostilbum hyphaenes isolate A... 104 9e-21
(A5USR7) RecName: Full=DNA-directed RNA polymerase subunit beta;... 103 1e-20
(A8F976) RecName: Full=DNA-directed RNA polymerase subunit beta;... 103 1e-20
AF020839_1(AF020839|pid:none) Hordeum vulgare RPB140 (RPB2) mRNA... 103 1e-20
(A7Z0M9) RecName: Full=DNA-directed RNA polymerase subunit beta;... 103 1e-20
(Q65PB5) RecName: Full=DNA-directed RNA polymerase subunit beta;... 103 1e-20
(Q5L897) RecName: Full=DNA-directed RNA polymerase subunit beta;... 103 1e-20
(Q03PU9) RecName: Full=DNA-directed RNA polymerase subunit beta;... 103 1e-20
L48488_1(L48488|pid:none) Borrelia burgdorferi RNA polymerase be... 103 1e-20
DQ385886_1(DQ385886|pid:none) Macrolepiota dolichaula isolate AF... 103 1e-20
AJ565858_1(AJ565858|pid:none) Escallonia sp. Oxelman 2340 partia... 103 1e-20
EU138803_1(EU138803|pid:none) Bacillus amyloliquefaciens strain ... 103 1e-20
CP000875_244(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2... 103 1e-20
DQ645517_1(DQ645517|pid:none) Cryptococcus humicola isolate AFTO... 103 1e-20
AY699197_1(AY699197|pid:none) Dioon edule RNA polymerase II seco... 103 1e-20
AY699220_1(AY699220|pid:none) Illicium anisatum RNA polymerase I... 103 1e-20
AF043427_1(AF043427|pid:none) Nymphaea odorata RNA polymerase II... 103 1e-20
AP008937_1523(AP008937|pid:none) Lactobacillus fermentum IFO 395... 103 2e-20
AY563267_1(AY563267|pid:none) Gnetum gnemon RNA polymerase II se... 103 2e-20
(A3DIZ4) RecName: Full=DNA-directed RNA polymerase subunit beta;... 103 2e-20
AP007281_1402(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 103 2e-20
(A5VLL4) RecName: Full=DNA-directed RNA polymerase subunit beta;... 103 2e-20
EU138862_1(EU138862|pid:none) Bacillus pumilus strain NRRL NRS-2... 102 2e-20
EU138829_1(EU138829|pid:none) Bacillus velezensis strain NRRL B-... 102 2e-20
EU138858_1(EU138858|pid:none) Bacillus atrophaeus strain NRRL BD... 102 2e-20
AY699199_1(AY699199|pid:none) Welwitschia mirabilis RNA polymera... 102 2e-20
AF172323_1(AF172323|pid:none) Bacillus licheniformis RNA polymer... 102 2e-20
EU138818_1(EU138818|pid:none) Bacillus sonorensis strain NRRL B-... 102 2e-20
CP001034_186(CP001034|pid:none) Natranaerobius thermophilus JW/N... 102 2e-20
EU138797_1(EU138797|pid:none) Bacillus subtilis strain NRRL B-36... 102 2e-20
EU138834_1(EU138834|pid:none) Bacillus velezensis strain NRRL BD... 102 2e-20
(Q3A9Q7) RecName: Full=DNA-directed RNA polymerase subunit beta;... 102 2e-20
CP000924_362(CP000924|pid:none) Thermoanaerobacter pseudethanoli... 102 3e-20
FM864216_658(FM864216|pid:none) Mycoplasma conjunctivae HRC/581T... 102 3e-20
CP000923_837(CP000923|pid:none) Thermoanaerobacter sp. X514, com... 102 3e-20
(Q2RFN9) RecName: Full=DNA-directed RNA polymerase subunit beta;... 102 3e-20
AY596740_1(AY596740|pid:none) Schizanthus pinnatus RNA polymeras... 102 3e-20
CP000975_799(CP000975|pid:none) Methylacidiphilum infernorum V4,... 102 3e-20
AJ556782_1(AJ556782|pid:none) Tephrosia purpurea partial rpb2 ge... 102 3e-20
(Q0AUH2) RecName: Full=DNA-directed RNA polymerase subunit beta;... 102 4e-20
AP008230_463(AP008230|pid:none) Desulfitobacterium hafniense Y51... 102 4e-20
(Q4A5S7) RecName: Full=DNA-directed RNA polymerase subunit beta;... 102 4e-20
(A6KYK3) RecName: Full=DNA-directed RNA polymerase subunit beta;... 102 4e-20
(Q9Z9M2) RecName: Full=DNA-directed RNA polymerase subunit beta;... 102 4e-20
DQ408129_1(DQ408129|pid:none) Peniophora nuda isolate AFTOL-ID 6... 102 4e-20
(Q11QA5) RecName: Full=DNA-directed RNA polymerase subunit beta;... 102 4e-20
(A4XI30) RecName: Full=DNA-directed RNA polymerase subunit beta;... 102 4e-20
AY643070_1(AY643070|pid:none) Capnocytophaga cynodegmi strain CI... 102 4e-20
AP008955_211(AP008955|pid:none) Brevibacillus brevis NBRC 100599... 102 4e-20
AY584690_1(AY584690|pid:none) Trypethelium sp. DUKE 0000007 isol... 101 6e-20
CP001615_1632(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 101 6e-20
(Q82Z40) RecName: Full=DNA-directed RNA polymerase subunit beta;... 101 6e-20
(Q3B1H7) RecName: Full=DNA-directed RNA polymerase subunit beta;... 101 6e-20
AY643069_1(AY643069|pid:none) Capnocytophaga canimorsus strain C... 101 6e-20
AY485628_1(AY485628|pid:none) Opegrapha varia DNA-dependent RNA ... 101 7e-20
EU138808_1(EU138808|pid:none) Bacillus vallismortis strain NRRL ... 101 7e-20
(B1IGG2) RecName: Full=DNA-directed RNA polymerase subunit beta;... 101 7e-20
CP000727_3249(CP000727|pid:none) Clostridium botulinum A str. Ha... 101 7e-20
(A5I7L4) RecName: Full=DNA-directed RNA polymerase subunit beta;... 101 7e-20
FJ932937_1(FJ932937|pid:none) Solanum hirtum clone 130005 At4g21... 101 7e-20
CP001581_3719(CP001581|pid:none) Clostridium botulinum A2 str. K... 101 7e-20
(A6LPQ4) RecName: Full=DNA-directed RNA polymerase subunit beta;... 101 7e-20
(P37870) RecName: Full=DNA-directed RNA polymerase subunit beta;... 101 7e-20
EF413630_1(EF413630|pid:none) Ceramothyrium carniolicum isolate ... 101 7e-20
(A7GJ82) RecName: Full=DNA-directed RNA polymerase subunit beta;... 101 7e-20
(Q8GCR6) RecName: Full=DNA-directed RNA polymerase subunit beta;... 100 9e-20
(Q3ATP5) RecName: Full=DNA-directed RNA polymerase subunit beta;... 100 9e-20
Y16469_1(Y16469|pid:none) Listeria murrayi rpoB gene, partial. 100 9e-20
(Q8R7U6) RecName: Full=DNA-directed RNA polymerase subunit beta;... 100 9e-20
AF043426_1(AF043426|pid:none) Peperomia caperata RNA polymerase ... 100 9e-20
(Q98Q23) RecName: Full=DNA-directed RNA polymerase subunit beta;... 100 1e-19
AP009380_1571(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 100 1e-19
AF020842_1(AF020842|pid:none) Aristolochia gigantea RPB140 (RPB2... 100 1e-19

>FM992694_9(FM992694|pid:none) Candida dubliniensis CD36 chromosome 7,
complete sequence.
Length = 1166

Score = 270 bits (689), Expect = 1e-70
Identities = 137/258 (53%), Positives = 171/258 (66%), Gaps = 26/258 (10%)
Frame = -1

Query: 746 PEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDENNT 567
P+I+MPFTESGM+PDVIINP+AFPSRMTIGM VE LAGKAGA+HG QD+T ++F+E +T
Sbjct: 906 PQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDT 965

Query: 566 AIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGK 387
D+FGEQL KAG+N GNE MYSG TG+E C+I+ G YYQRLRHMV DK+QVR+ G
Sbjct: 966 PADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGP 1025

Query: 386 VNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKLCGSTL 207
VN+LT QP+KGRK GGIR GEMERD+L+ HG SF L DRL+ SD+ + VC+ CGS L
Sbjct: 1026 VNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSIL 1085

Query: 206 TIYSKKDYSNQTVS-ECKSCKSS-------------------------DSIATISIPYVF 105
T + S C+ C S D T++IP+V
Sbjct: 1086 TTQTSVPRIGSMASIRCRRCAVSLDKYEGYAADSDIWEDGHGKKFVGGDDTTTVAIPFVL 1145

Query: 104 TYLVAELAAVNITMKLQV 51
YL +EL+A+ I M+ V
Sbjct: 1146 KYLDSELSAMGIKMRYNV 1163

Score = 171 bits (433), Expect = 6e-41
Identities = 91/222 (40%), Positives = 129/222 (58%)
Frame = -1

Query: 1370 RGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKA 1191
RG+FFA +KTT +RKL+PESWGF CPVHTPDG+PCGLLNHLS C + +A+ V KA
Sbjct: 482 RGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKA 541

Query: 1190 QTLLPSFLAAHGMLPIDMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNE 1011
T L G+LP D + + + LDGR++G + G + LRY + G
Sbjct: 542 LTQL-------GVLPADSFAAGPN-LCCVQLDGRIVGWTTHEQGRIVADTLRYWKVNGGH 593

Query: 1010 PSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLTSGQNELIGPQEQLYMEIA 831
+P +EI Y PP+N GQY G+ +F +R MRPV L + +++GP EQ+YM +A
Sbjct: 594 -GLPLDLEIGYVPPSN--KGQYPGLYIFGGRSRMMRPVRYLPLDKEDIVGPFEQVYMNVA 650

Query: 830 VVPHEVIKGVTTHIETSPTAMFSLXXXXPEINMPFTESGMKP 705
V P E+ + +H+E +PT + S+ PF++ P
Sbjct: 651 VTPEEIENNIHSHVEFTPTNILSILANL----TPFSDFNQSP 688

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,475,131,882
Number of extensions: 56035226
Number of successful extensions: 149206
Number of sequences better than 10.0: 3311
Number of HSP's gapped: 147331
Number of HSP's successfully gapped: 4272
Length of query: 456
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 324
Effective length of database: 623,955,076
Effective search space: 202161444624
Effective search space used: 202161444624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.89 gvh: 0.46 alm: 0.30 top: 0.27 tms: 0.07 mit: 0.55 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
20.0 %: endoplasmic reticulum
16.0 %: Golgi
16.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U12284-1 is mit

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0