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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U12270-1
Contig ID Contig-U12270-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12270-1 (Contig-U12270-1Q) /CSM_Contig/Contig-U12270-1Q.Seq.d
AAAATTAAAAGTATTAAAATCTAATTTTATTTTCAATCATTATTTCATTA
AATCAAACAATCAAATAAACTTTAAAATAAATTAATAAAATGACACTCTT
AGCTTCAATCTCATCAATTGGTAATGTTAAATCAATTTCAAAATCAAATA
ATTTTTCATCATTATCAAACTCATCATTACAATCATCAAATTCAATTCAA
TGCGGTGGCTGCGGTGGTGGTAGTCCATTAATGTGGTACTGTTGGTAATC
TCGTAGGTGGTGTACTTGTCGGAACTGGTATTATTCTTGGTACTGTCGTT
GGAACTGTCAATGGTGTTGTTGGTGGTTTATTAAGTGGTCCAAACTGTGG
TTGCCATTAAATTTATTAAAATCGATAATGTTTTTTTATAATAAATAAAT
TTGTATAAATAAAAAATGAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA----------CTTTTTTTGGGNCTTTN
CTTGGGGTTTTTGGGGGTTTTTTTTGTGGTTCCCCCTGTGGGTGTCTTTT
TTTTTTTTNTTTTTTTTTTTTTTTTTGTTTTTTTCCNTTTTAAAAAAAAA
ATTCAAAAAAAAAAATATATAAATAAAATAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
Gap gap included
Contig length 745
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 43
Number of EST 47
Link to clone list U12270
List of clone(s) 

est1=SSJ262E,1,418
est2=SSC175E,3,470
est3=SSL488E,20,449
est4=CHP816F,31,490
est5=SHE795F,32,477
est6=SSJ767E,35,442
est7=CHP816Z,47,442
est8=SSJ781E,47,431
est9=CHQ862F,49,442
est10=CHQ862Z,49,424
est11=CHC539F,54,496
est12=CHC539Z,54,459
est13=CHJ361F,55,412
est14=SSA343E,60,450
est15=SSD896F,60,316
est16=SSE204E,62,430
est17=SSG177E,63,430
est18=SSI372F,63,422
est19=SSL676F,63,489
est20=SSA383F,64,362
est21=SSC546E,64,486
est22=SSE183E,64,524
est23=SSK490E,64,414
est24=SSM662E,64,425
est25=SSA111E,65,454
est26=SSC450E,65,448
est27=SSK496E,65,453
est28=SSM548E,65,436
est29=SSA449E,66,441
est30=SSC203F,66,513
est31=SSC847F,66,496
est32=SSJ864F,66,438
est33=SSM451E,66,469
est34=SSB745F,70,403
est35=SSI705F,70,511
est36=SSL429Z,71,456
est37=SSL738E,71,450
est38=SSG858E,75,442
est39=SSH182E,75,425
est40=SSH848E,77,455
est41=SSH529E,79,445
est42=SSB221F,88,419
est43=SSJ837E,98,449
est44=SSF694E,150,426
est45=SSG127Z,167,429
est46=SSL366Z,265,489
est47=SSL676Z,525,747
Translated Amino Acid sequence 
kiksiki*fyfqslfh*ikqsnkl*nklik*hs*lqshqlvmlnqfqnqiifhhyqthhy
nhqiqfnavaavvvvh*cgtvgnlvggvlvgtgiilgtvvgtvngvvggllsgpncgch*
iy*nr*cffiinkfv*IKNEFQKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK---

---LFLGLXLGFLGVFFVVPPVGVFFFFXFFFFFVFFXFKKKIQKKKYINKIKKKKKKKK
KKKKKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
kiksiki*fyfqslfh*ikqsnkl*nklik*hs*lqshqlvmlnqfqnqiifhhyqthhy
nhqiqfnavaavvvvh*cgtvgnlvggvlvgtgiilgtvvgtvngvvggllsgpncgch*
iy*nr*cffiinkfv*IKNEFQKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK---

---LFLGLXLGFLGVFFVVPPVGVFFFFXFFFFFVFFXFKKKIQKKKYINKIKKKKKKKK
KKKKKKKKKKKKKKKKK

Frame B:
klkvlksnfifnhyfiksnnqinfkin**ndtlsfnlinw*c*infkik*ffiiikliit
iikfnsmrwlrww*sinvvllvis*vvylselvlflvlslelsmvllvvy*vvqtvvaik
fikidnvfl**inlyk*kmnfkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk---

---ffwxfxwgfwgfflwfplwvsfffxffffflffsxlkkkfkkkni*ik*kkkkkkkk
kkkkkkkkkkkkkkkk

Frame C:
n*ky*nlilfsiiislnqtik*tlk*inkmtllasissignvksisksnnfsslsnsslq
ssnsiqcggcgggsplmwycw*srrwctcrnwyyswycrwncqwccwwfikwsklwlpln
llksimffynk*icinkk*iskkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk---

---ffgxxlgvfggffcgspcgclfffxfffffcffpf*kknskkkiyk*nkkkkkkkkk
kkkkkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12270-1 (Contig-U12270-1Q)
/CSM_Contig/Contig-U12270-1Q.Seq.d
         (755 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12270-1 (Contig-U12270-1Q) /CSM_Contig/Conti...   325  4e-89
Contig-U04947-1 (Contig-U04947-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U14028-1 (Contig-U14028-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U03801-1 (Contig-U03801-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U10340-1 (Contig-U10340-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U09544-1 (Contig-U09544-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U14810-1 (Contig-U14810-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U14185-1 (Contig-U14185-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U12835-1 (Contig-U12835-1Q) /CSM_Contig/Conti...    34  0.21

>Contig-U12270-1 (Contig-U12270-1Q) /CSM_Contig/Contig-U12270-1Q.Seq.d
          Length = 755

 Score =  325 bits (164), Expect = 4e-89
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                       
Query: 192 tcaattcaatgcggtggctgcggtggtggtagtccattaatgtggtactgttggtaatct 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tcaattcaatgcggtggctgcggtggtggtagtccattaatgtggtactgttggtaatct 251

                                                                       
Query: 252 cgtaggtggtgtacttgtcggaactggtattattcttggtactgtcgttggaactgtcaa 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cgtaggtggtgtacttgtcggaactggtattattcttggtactgtcgttggaactgtcaa 311

                                                       
Query: 312 tggtgttgttggtggtttattaagtggtccaaactgtggttgcc 355
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tggtgttgttggtggtttattaagtggtccaaactgtggttgcc 355


 Score =  254 bits (128), Expect = 1e-67
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattaaaagtattaaaatctaattttattttcaatcattatttcattaaatcaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaattaaaagtattaaaatctaattttattttcaatcattatttcattaaatcaaacaa 60

                                                                       
Query: 61  tcaaataaactttaaaataaattaataaaatgacactcttagcttcaatctcatcaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaaataaactttaaaataaattaataaaatgacactcttagcttcaatctcatcaattg 120

                   
Query: 121 gtaatgtt 128
           ||||||||
Sbjct: 121 gtaatgtt 128


 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 576 gtggttccccctgtgggtgtc 596
           |||||||||||||||||||||
Sbjct: 576 gtggttccccctgtgggtgtc 596


>Contig-U04947-1 (Contig-U04947-1Q) /CSM_Contig/Contig-U04947-1Q.Seq.d
          Length = 626

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 66  taaactttaaaataaattaataaaa 90
           |||| ||||||||||||||||||||
Sbjct: 168 taaaatttaaaataaattaataaaa 144


>Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Contig-U14510-1Q.Seq.d
          Length = 1389

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 74  aaaataaattaataaaatg 92
           |||||||||||||||||||
Sbjct: 93  aaaataaattaataaaatg 111


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7596
Number of Sequences: 6905
Number of extensions: 7596
Number of successful extensions: 1081
Number of sequences better than 10.0: 177
length of query: 755
length of database: 5,674,871
effective HSP length: 16
effective length of query: 739
effective length of database: 5,564,391
effective search space: 4112084949
effective search space used: 4112084949
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12270-1 (Contig-U12270-1Q) /CSM_Contig/Contig-U12270-1Q.Seq.d
         (755 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90879) Dictyostelium discoideum slug cDNA, clone SSJ262.        226   2e-82  5
(AU038542) Dictyostelium discoideum slug cDNA, clone SSH848.      242   3e-79  3
(C93805) Dictyostelium discoideum slug cDNA, clone SSL738.        242   3e-79  3
(AU038033) Dictyostelium discoideum slug cDNA, clone SSH182.      244   5e-77  3
(C92024) Dictyostelium discoideum slug cDNA, clone SSC175.        242   9e-77  3
(C89806) Dictyostelium discoideum slug cDNA, clone SSG177.        226   1e-75  4
(AU037712) Dictyostelium discoideum slug cDNA, clone SSE204.      226   1e-75  4
(C93302) Dictyostelium discoideum slug cDNA, clone SSM548.        226   1e-75  4
(C83872) Dictyostelium discoideum slug cDNA, clone SSA449.        226   9e-74  4
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...   242   2e-73  4
(C93353) Dictyostelium discoideum slug cDNA, clone SSM662.        212   2e-71  4
(AU038296) Dictyostelium discoideum slug cDNA, clone SSH529.      210   2e-70  3
(AU038746) Dictyostelium discoideum slug cDNA, clone SSL429.      210   2e-70  3
(C24616) Dictyostelium discoideum slug cDNA, clone SL-X011.       210   2e-70  3
(AU051947) Dictyostelium discoideum slug cDNA, clone SSC450.      192   8e-70  3
(C91341) Dictyostelium discoideum slug cDNA, clone SSK496.        192   8e-70  3
(BJ394142) Dictyostelium discoideum cDNA clone:dds33n23, 5' ...   202   6e-68  3
(AU038795) Dictyostelium discoideum slug cDNA, clone SSL488.      242   1e-67  2
(C91336) Dictyostelium discoideum slug cDNA, clone SSK490.        176   3e-65  3
(AU036980) Dictyostelium discoideum slug cDNA, clone SSA343.      176   4e-65  3
(C84863) Dictyostelium discoideum slug cDNA, clone SSG858.        184   1e-64  3
(AU039152) Dictyostelium discoideum slug cDNA, clone SSM451.      184   2e-64  3
(AU071315) Dictyostelium discoideum slug cDNA, clone SSB221.      186   2e-64  4
(C92656) Dictyostelium discoideum slug cDNA, clone SSF694.        226   3e-62  3
(C90039) Dictyostelium discoideum slug cDNA, clone SSG127.        226   2e-60  3
(C91950) Dictyostelium discoideum slug cDNA, clone SSC546.        159   9e-60  3
(AU073905) Dictyostelium discoideum slug cDNA, clone SSI705.      151   7e-54  4
(BJ366891) Dictyostelium discoideum cDNA clone:ddc40j15, 5' ...   155   8e-53  3
(C91172) Dictyostelium discoideum slug cDNA, clone SSJ767.        155   1e-52  3
(AU071656) Dictyostelium discoideum slug cDNA, clone SSC203.      151   1e-52  3
(AU072609) Dictyostelium discoideum slug cDNA, clone SSA383.      139   2e-50  4
(AU072320) Dictyostelium discoideum slug cDNA, clone SSE183.      139   2e-50  4
(AU073789) Dictyostelium discoideum slug cDNA, clone SSI372.      137   9e-50  4
(C91221) Dictyostelium discoideum slug cDNA, clone SSJ837.        155   2e-49  3
(AU074231) Dictyostelium discoideum slug cDNA, clone SSJ864.      121   5e-49  3
(AU071531) Dictyostelium discoideum slug cDNA, clone SSB745.      113   1e-46  3
(AU071965) Dictyostelium discoideum slug cDNA, clone SSC847.      105   2e-44  3
(AU074727) Dictyostelium discoideum slug cDNA, clone SSL676.      100   1e-42  3
(AU072282) Dictyostelium discoideum slug cDNA, clone SSD896.      119   2e-41  3
(AU038702) Dictyostelium discoideum slug cDNA, clone SSL366.      163   1e-35  1
(AU053951) Dictyostelium discoideum slug cDNA, clone SLK261.      145   3e-30  1
(AU074670) Dictyostelium discoideum slug cDNA, clone SSL488.       66   1e-25  3
(C91182) Dictyostelium discoideum slug cDNA, clone SSJ781.         66   2e-06  1
(C84153) Dictyostelium discoideum slug cDNA, clone SSC358.         66   2e-06  1
(AU038548) Dictyostelium discoideum slug cDNA, clone SSH855.       60   1e-04  1
(C90894) Dictyostelium discoideum slug cDNA, clone SSJ278.         60   1e-04  1
(C90393) Dictyostelium discoideum slug cDNA, clone SSI350.         60   1e-04  1
(C84831) Dictyostelium discoideum slug cDNA, clone SSG665.         60   1e-04  1
(BJ378134) Dictyostelium discoideum cDNA clone:ddc27m09, 3' ...    60   1e-04  1
(BJ363586) Dictyostelium discoideum cDNA clone:ddc27m09, 5' ...    60   1e-04  1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    58   5e-04  1
(AU074335) Dictyostelium discoideum slug cDNA, clone SSK408.       58   5e-04  1
(AU073324) Dictyostelium discoideum slug cDNA, clone SSG677.       58   5e-04  1
(AU072862) Dictyostelium discoideum slug cDNA, clone SSF259.       58   5e-04  1
(AU072278) Dictyostelium discoideum slug cDNA, clone SSD885.       58   5e-04  1
(AU062110) Dictyostelium discoideum slug cDNA, clone SLH633.       58   5e-04  1
(AU051921) Dictyostelium discoideum slug cDNA, clone SSC402.       58   5e-04  1
(AU039081) Dictyostelium discoideum slug cDNA, clone SSM358.       58   5e-04  1
(AU038149) Dictyostelium discoideum slug cDNA, clone SSH332.       58   5e-04  1
(AU038045) Dictyostelium discoideum slug cDNA, clone SSH195.       58   5e-04  1
(AU037954) Dictyostelium discoideum slug cDNA, clone SSE490.       58   5e-04  1
(AU037305) Dictyostelium discoideum slug cDNA, clone SSB740.       58   5e-04  1
(C94363) Dictyostelium discoideum slug cDNA, clone SSK883.         58   5e-04  1
(C92949) Dictyostelium discoideum slug cDNA, clone SSF259.         58   5e-04  1
(C92936) Dictyostelium discoideum slug cDNA, clone SSF116.         58   5e-04  1
(C92905) Dictyostelium discoideum slug cDNA, clone SSF670.         58   5e-04  1
(C92831) Dictyostelium discoideum slug cDNA, clone SSF453.         58   5e-04  1
(C92803) Dictyostelium discoideum slug cDNA, clone SSF364.         58   5e-04  1
(C89809) Dictyostelium discoideum slug cDNA, clone SSG182.         58   5e-04  1
(C84234) Dictyostelium discoideum slug cDNA, clone SSB359.         58   5e-04  1
(BJ406779) Dictyostelium discoideum cDNA clone:dds36m07, 3' ...    58   5e-04  1
(BJ394767) Dictyostelium discoideum cDNA clone:dds36m07, 5' ...    58   5e-04  1
(BJ386744) Dictyostelium discoideum cDNA clone:dds10p12, 5' ...    58   5e-04  1
(BJ385647) Dictyostelium discoideum cDNA clone:ddc55l16, 3' ...    58   5e-04  1
(BJ383489) Dictyostelium discoideum cDNA clone:ddc53p04, 3' ...    58   5e-04  1
(BJ370846) Dictyostelium discoideum cDNA clone:ddc55l16, 5' ...    58   5e-04  1
(BJ370187) Dictyostelium discoideum cDNA clone:ddc53p04, 5' ...    58   5e-04  1
(C89901) Dictyostelium discoideum slug cDNA, clone SSG601.         56   0.002  1
(C90691) Dictyostelium discoideum slug cDNA, clone SSJ629.         50   0.12   1
(C90004) Dictyostelium discoideum slug cDNA, clone SSG879.         50   0.12   1
(BJ404572) Dictyostelium discoideum cDNA clone:dds28o24, 3' ...    50   0.12   1
(BJ400126) Dictyostelium discoideum cDNA clone:dds8l20, 3' e...    50   0.12   1
(BJ392790) Dictyostelium discoideum cDNA clone:dds28o24, 5' ...    50   0.12   1
(BJ388303) Dictyostelium discoideum cDNA clone:dds8l20, 5' e...    50   0.12   1
(AG261464) Lotus japonicus DNA, clone:LjT53c08_sfi.                34   5.1    2
(AC186758) Pongo abelii chromosome UNK clone CH276-11H12, co...    44   7.5    1
(AX926711) Sequence 1 from Patent WO03084989.                      44   7.5    1
(AL391728) Human DNA sequence from clone RP11-423A18 on chro...    44   7.5    1
(AC055743) Homo sapiens chromosome 3 clone RP11-208N13, WORK...    44   7.5    1
(AE017198) Lactobacillus johnsonii NCC 533, complete genome.       44   7.5    1

>(C90879) Dictyostelium discoideum slug cDNA, clone SSJ262.
          Length = 413

 Score =  226 bits (114), Expect(5) = 2e-82
 Identities = 120/122 (98%)
 Strand = Plus / Plus


Query: 234 tggtactgttggtaatctcgtaggtggtgtacttgtcggaactggtattattcttggtac 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 229 tggtactgttggtaatctcgtaggtggtgtacttgtcggaactggtattattgttggtac 288


Query: 294 tgtcgttggaactgtcaatggtgttgttggtggtttattaagtggtccaaactgtggttg 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 289 tgtcgttggaactgtcaatggtgttgttggtggtttattaagtggtccaaactgtggatg 348


Query: 354 cc 355
           ||
Sbjct: 349 cc 350

 Score = 73.8 bits (37), Expect(5) = 2e-82
 Identities = 37/37 (100%)
 Strand = Plus / Plus


Query: 92  gacactcttagcttcaatctcatcaattggtaatgtt 128
           |||||||||||||||||||||||||||||||||||||
Sbjct: 91  gacactcttagcttcaatctcatcaattggtaatgtt 127

 Score = 44.1 bits (22), Expect(5) = 2e-82
 Identities = 22/22 (100%)
 Strand = Plus / Plus


Query: 1  aaaattaaaagtattaaaatct 22
          ||||||||||||||||||||||
Sbjct: 1  aaaattaaaagtattaaaatct 22

 Score = 34.2 bits (17), Expect(5) = 2e-82
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 216 ggtggtagtccattaat 232
           |||||||||||||||||
Sbjct: 212 ggtggtagtccattaat 228

 Score = 30.2 bits (15), Expect(5) = 2e-82
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 204 ggtggctgcggtggt 218
           |||||||||||||||
Sbjct: 203 ggtggctgcggtggt 217

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 188,779,196
Number of extensions: 9939127
Number of successful extensions: 763659
Number of sequences better than 10.0: 90
Length of query: 755
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 731
Effective length of database: 97,308,875,965
Effective search space: 71132788330415
Effective search space used: 71132788330415
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12270-1 (Contig-U12270-1Q) /CSM_Contig/Contig-U12270-1Q.Seq.d
         (755 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75JC1) RecName: Full=HssA/B-like protein 16;  &AC117072_59(AC1...    42   2e-04
(Q86HG3) RecName: Full=HssA/B-like protein 10;  &AC117072_52(AC1...    42   5e-04
(Q75JC6) RecName: Full=HssA/B-like protein 12;  &AC117072_54(AC1...    35   0.025
AC117072_57(AC117072|pid:none) Dictyostelium discoideum chromoso...    37   0.032
(Q75JC7) RecName: Full=HssA/B-like protein 11;  &AC117072_53(AC1...    35   0.041
(Q55AL8) RecName: Full=HssA/B-like protein 13;                         34   0.053
AK125511_1(AK125511|pid:none) Homo sapiens cDNA FLJ43523 fis, cl...    40   0.10
EF101928_410(EF101928|pid:none) Acanthocystis turfacea Chlorella...    39   0.18
AM494940_72(AM494940|pid:none) Leishmania braziliensis chromosom...    35   2.0
EF183519_1(EF183519|pid:none) Pinctada margaritifera KRMP-6 mRNA...    35   2.6
DQ296176_1(DQ296176|pid:none) Brassica rapa clone 34 unknown mRNA.     35   2.6
EF183518_1(EF183518|pid:none) Pinctada margaritifera KRMP-5 mRNA...    35   2.6
CP000249_3291(CP000249|pid:none) Frankia sp. CcI3, complete geno...    35   3.3
EF192243_1(EF192243|pid:none) Pinctada margaritifera KRMP-10 mRN...    35   3.3
AC117072_56(AC117072|pid:none) Dictyostelium discoideum chromoso...    27   7.0
CT573213_5346(CT573213|pid:none) Frankia alni str. ACN14A chromo...    33   7.5

>(Q75JC1) RecName: Full=HssA/B-like protein 16;
           &AC117072_59(AC117072|pid:none)
          Length = 89

 Score = 42.4 bits (98), Expect(2) = 2e-04
 Identities = 23/48 (47%), Positives = 24/48 (50%)
 Frame = +3

Query: 90  MTLLASISSIGNVXXXXXXXXXXXXXXXXXXXXXXXXCGGCGGGSPLM 233
           MTLLASISSIGNV                        CGGCGGGSPL+
Sbjct: 1   MTLLASISSIGNVKSISKSNNFSSLSNSSLQSSNSIQCGGCGGGSPLI 48

 Score = 25.8 bits (55), Expect(2) = 2e-04
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 334 SGPNCGCH 357
           SGPNCGCH
Sbjct: 82  SGPNCGCH 89

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 497,945,060
Number of extensions: 6819935
Number of successful extensions: 28611
Number of sequences better than 10.0: 16
Number of HSP's gapped: 28233
Number of HSP's successfully gapped: 25
Length of query: 251
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 126
Effective length of database: 646,610,989
Effective search space: 81472984614
Effective search space used: 81472984614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.03  gvh: 0.50  alm: 0.22  top: 0.13  tms: 0.13  mit: 0.26  mip: 0.00
 nuc: 5.73  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 68.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: plasma membrane
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for Contig-U12270-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 38
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 4
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0