Contig-U12243-1 |
Contig ID |
Contig-U12243-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1627 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
22 |
Number of EST |
26 |
Link to clone list |
U12243 |
List of clone(s) |
est1=SSH591F,1,382 est2=SSH594F,1,382 est3=VSG637F,215,618 est4=SSJ166Z,619,1362 est5=SSM671Z,621,1070 est6=VFC510F,632,833 est7=VSE304E,632,823 est8=SLC331F,638,1067 est9=SSD146E,709,1517 est10=SSH594Z,786,1316 est11=SSL855Z,806,1538 est12=SSL623Z,829,1544 est13=SSL682Z,846,1545 est14=VFC510Z,861,1384 est15=SSM886Z,923,1629 est16=SSE547Z,973,1630 est17=SSM603Z,979,1578 est18=SSI475Z,1012,1537 est19=SSB423F,1034,1318 est20=SSB424F,1034,1201 est21=VHG241F,1104,1544 est22=VHG241Z,1104,1503 est23=SSB561Z,1132,1534 est24=SLC331Z,1145,1629 est25=SSL856Z,1178,1542 est26=SHC185Z,1213,1451
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Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.29 |
Homology vs DNA |
Query= Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Contig-U12243-1Q.Seq.d (1637 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C93909) Dictyostelium discoideum slug cDNA, clone SSL855. 1092 0.0 3 (C93756) Dictyostelium discoideum slug cDNA, clone SSL682. 1092 0.0 3 (C93260) Dictyostelium discoideum slug cDNA, clone SSM886. 1092 0.0 3 (C92440) Dictyostelium discoideum slug cDNA, clone SSE547. 1092 0.0 1 (C93305) Dictyostelium discoideum slug cDNA, clone SSM603. 1080 0.0 1 (C93700) Dictyostelium discoideum slug cDNA, clone SSL623. 955 0.0 3 (L21010) Dictyostelium discoideum Rab1B mRNA, 3' end of cds. 813 0.0 5 (C90430) Dictyostelium discoideum slug cDNA, clone SSI475. 1019 0.0 2 (BJ430080) Dictyostelium discoideum cDNA clone:ddv6c03, 3' e... 761 0.0 3 (BJ421606) Dictyostelium discoideum cDNA clone:ddv43a12, 5' ... 854 0.0 1 (AU034253) Dictyostelium discoideum slug cDNA, clone SLC331. 773 0.0 2 (AU038347) Dictyostelium discoideum slug cDNA, clone SSH594. 660 0.0 4 (BJ440294) Dictyostelium discoideum cDNA clone:ddv43a12, 3' ... 793 0.0 1 (AU037170) Dictyostelium discoideum slug cDNA, clone SSB561. 765 0.0 1 (AU266681) Dictyostelium discoideum vegetative cDNA clone:VS... 553 0.0 2 (C90802) Dictyostelium discoideum slug cDNA, clone SSJ166. 170 e-173 8 (AU071405) Dictyostelium discoideum slug cDNA, clone SSB423. 476 e-129 1 (C93361) Dictyostelium discoideum slug cDNA, clone SSM671. 172 e-113 5 (AU060942) Dictyostelium discoideum slug cDNA, clone SLC331. 167 3e-91 5 (AU071406) Dictyostelium discoideum slug cDNA, clone SSB424. 333 1e-86 1 (AU073582) Dictyostelium discoideum slug cDNA, clone SSH594. 268 4e-80 2 (AU073581) Dictyostelium discoideum slug cDNA, clone SSH591. 268 4e-80 2 (BJ331981) Dictyostelium discoideum cDNA clone:dda37f20, 5' ... 172 4e-67 5 (L21009) Dictyostelium discoideum Rab1A mRNA, complete cds. 172 2e-63 5 (AU061016) Dictyostelium discoideum slug cDNA, clone SLC626. 172 1e-62 5 (AU270410) Dictyostelium discoideum vegetative cDNA clone:VS... 172 1e-59 4 (C89695) Dictyostelium discoideum slug cDNA, clone SSA695. 125 4e-48 5 (AL440480) T3 end of clone BD0AA012F12 of library BD0AA from... 107 3e-39 4 (ES599203) BPE00000760 Buddenbrockia plumatellae SMART cDNA ... 78 9e-38 5 (EH011974) USDA-FP_184920 Lysiphlebus testaceipes adult whol... 66 5e-37 6 (EB485357) 1099288469394 12-DrosW-norm-1P5Kb Drosophila will... 66 1e-36 5 (EB454766) 1099341333909 12-DrosW-std-1P6Kb Drosophila willi... 66 1e-36 5 (EB456325) 1099341391033 12-DrosW-std-1P6Kb Drosophila willi... 66 2e-35 5 (EB458024) 1099341542629 12-DrosW-std-1P6Kb Drosophila willi... 66 2e-35 5 (EB494285) 1099435179131 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5 (EB497961) 1099435218645 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5 (EB454712) 1099341320890 12-DrosW-std-1P6Kb Drosophila willi... 66 2e-35 5 (EB485313) 1099288469171 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5 (EB502510) 1099476361079 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5 (EB487449) 1099341206040 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5 (BJ347346) Dictyostelium discoideum cDNA clone:dda26h20, 3' ... 100 3e-33 3 (EG017620) EST02254_0906 Sporophyte cDNA Library Porphyra ha... 76 3e-33 6 (BJ328400) Dictyostelium discoideum cDNA clone:dda28e03, 5' ... 100 4e-33 3 (BJ412726) Dictyostelium discoideum cDNA clone:ddv9j18, 5' e... 100 4e-33 3 (BJ415110) Dictyostelium discoideum cDNA clone:ddv21o12, 5' ... 100 4e-33 3 (BJ327500) Dictyostelium discoideum cDNA clone:dda20m14, 5' ... 100 4e-33 3 (M34457) Dictyostelium discoideum GTP-binding protein SAS1 g... 100 1e-32 3 (EA200507) Sequence 64822 from patent US 7214786. 135 2e-32 2 (C92753) Dictyostelium discoideum slug cDNA, clone SSF195. 88 3e-32 4 (C89790) Dictyostelium discoideum slug cDNA, clone SSG849. 88 3e-32 4 (DN312681) PL06013B1D07 cDNA from juvenile hermaphodites Sch... 129 6e-32 3 (EG348194) SAAH-aac84f09.g1 Agen 0058 Schmidtea mediterranea... 129 7e-32 3 (EG351240) SAAH-aad16g09.g1 Agen 0058 Schmidtea mediterranea... 129 7e-32 3 (EG413517) SAAH-aab11d02.b1 Agen 0058 Schmidtea mediterranea... 129 7e-32 3 (EC824262) SME00007547 esmbsro2 Sawyeria marylandensis cDNA,... 127 7e-32 2 (EC821471) SME00006372 esmbsro2 Sawyeria marylandensis cDNA,... 127 7e-32 2 (EC819807) SME00002670 esmbsro2 Sawyeria marylandensis cDNA,... 127 7e-32 2 (EE672460) SAAH-aab74f01.g1 Agen 0058 Schmidtea mediterranea... 129 8e-32 3 (EE666041) SAAH-aab55g07.g1 Agen 0058 Schmidtea mediterranea... 129 8e-32 3 (EC617428) SAAH-aaa40d06.g1 Agen 0058 Schmidtea mediterranea... 129 9e-32 3 (EG350396) SAAH-aad11e09.g1 Agen 0058 Schmidtea mediterranea... 129 9e-32 3 (DN314465) PL06018A2F09 cDNA from juvenile hermaphodites Sch... 129 9e-32 3 (DN308618) PL05017A1F04 cDNA from sexually mature hermaphodi... 129 9e-32 3 (DN313077) PL06014B1F11 cDNA from juvenile hermaphodites Sch... 129 1e-31 3 (EC615581) SAAH-aaa66h03.g1 Agen 0058 Schmidtea mediterranea... 129 1e-31 3 (EE671325) SAAH-aac56f11.g1 Agen 0058 Schmidtea mediterranea... 129 1e-31 3 (DN302017) PL04024A2H01 cDNA from sexually mature hermaphodi... 129 1e-31 3 (BJ434188) Dictyostelium discoideum cDNA clone:ddv16l01, 3' ... 94 2e-31 3 (EB497386) 1099435212776 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-31 5 (BJ343136) Dictyostelium discoideum cDNA clone:dda22k04, 3' ... 100 3e-31 2 (EG347207) SAAH-aaa75a09.g1 Agen 0058 Schmidtea mediterranea... 129 3e-31 2 (EE281430) SAAH-aaa93a01.g1 Agen 0058 Schmidtea mediterranea... 129 3e-31 2 (BJ414563) Dictyostelium discoideum cDNA clone:ddv19j13, 5' ... 100 3e-31 2 (EC618058) SAAH-aaa63g09.g1 Agen 0058 Schmidtea mediterranea... 129 1e-30 3 (EE282655) SAAH-aab11d02.g1 Agen 0058 Schmidtea mediterranea... 129 4e-30 3 (BJ397989) Dictyostelium discoideum cDNA clone:dds10d18, 3' ... 88 6e-30 3 (AU037978) Dictyostelium discoideum slug cDNA, clone SSH118. 84 2e-28 4 (CN635937) 124F08_546145 Douglas-fir cDNA library PmIFG_73-6... 76 2e-28 3 (BJ429793) Dictyostelium discoideum cDNA clone:ddv4l19, 3' e... 101 2e-28 2 (FE264999) CAZO4201.rev CAZO Naegleria gruberi Flagellate St... 82 8e-28 4 (CA756042) BR030033000_PLATE_H01_8_014.ab1 OA Oryza sativa J... 62 9e-28 5 (FE265000) CAZO4201.fwd CAZO Naegleria gruberi Flagellate St... 82 9e-28 4 (DN297967) PL04011A1H10 cDNA from sexually mature hermaphodi... 100 3e-27 3 (C91481) Dictyostelium discoideum slug cDNA, clone SSK334. 100 3e-27 3 (FE258317) CAPH7080.fwd CAPH Naegleria gruberi amoeba stage ... 82 3e-27 4 (FE258316) CAPH7080.rev CAPH Naegleria gruberi amoeba stage ... 82 3e-27 4 (C94280) Dictyostelium discoideum slug cDNA, clone SSK733. 86 3e-27 5 (C84703) Dictyostelium discoideum slug cDNA, clone SSE658. 86 4e-27 5 (BJ359917) Dictyostelium discoideum cDNA clone:ddc3a07, 5' e... 94 4e-27 2 (EB501567) 1099435333319 12-DrosW-norm-1P5Kb Drosophila will... 66 5e-27 4 (AU060975) Dictyostelium discoideum slug cDNA, clone SLC452. 135 6e-27 1 (AU034548) Dictyostelium discoideum slug cDNA, clone SLC452. 135 6e-27 1 (AU033924) Dictyostelium discoideum slug cDNA, clone SLB620. 135 6e-27 1 (EG416999) SAAH-aab55g07.b1 Agen 0058 Schmidtea mediterranea... 129 6e-27 2 (AB015237) Dictyostelium discoideum Rab1C mRNA, complete cds. 86 7e-27 5 (EG016891) EST00157_0906 Sporophyte cDNA Library Porphyra ha... 68 8e-27 5 (FE249049) CAPH2054.fwd CAPH Naegleria gruberi amoeba stage ... 82 1e-26 4 (M38393) Discopyge ommata GTP-binding protein (o-rab1) mRNA,... 66 1e-26 6 (AU051903) Dictyostelium discoideum slug cDNA, clone SSC355. 74 2e-26 5 (EG409726) SAAH-aaa40d06.b1 Agen 0058 Schmidtea mediterranea... 127 3e-26 2
>(C93909) Dictyostelium discoideum slug cDNA, clone SSL855. Length = 730
Score = 1092 bits (551), Expect(3) = 0.0 Identities = 551/551 (100%) Strand = Plus / Plus
Query: 992 tatttcaacaattggtgttgattttaaaattcgtacaattaatttagatggtaagatcat 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 176 tatttcaacaattggtgttgattttaaaattcgtacaattaatttagatggtaagatcat 235
Query: 1052 taaattacaaatctgggatactgcaggacaagaaagattcagaacaattacatcatcata 1111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 taaattacaaatctgggatactgcaggacaagaaagattcagaacaattacatcatcata 295
Query: 1112 ttatcgtggtgcacatggtatcatcgttgtgtatgatgtcactgatcatgtcagtttcaa 1171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 ttatcgtggtgcacatggtatcatcgttgtgtatgatgtcactgatcatgtcagtttcaa 355
Query: 1172 caatgtcaaacaatggatgcaagaaattcaaagatatgcatgtgatagtgtaactcgttt 1231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 caatgtcaaacaatggatgcaagaaattcaaagatatgcatgtgatagtgtaactcgttt 415
Query: 1232 actcgttggtaacaaatgtgatctcattgaaaagaagatcgtcgataccagtaccgccag 1291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 416 actcgttggtaacaaatgtgatctcattgaaaagaagatcgtcgataccagtaccgccag 475
Query: 1292 agaatatgccgactctgttggtattccatttttggaaacatctgccaaatcatcagcaaa 1351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 agaatatgccgactctgttggtattccatttttggaaacatctgccaaatcatcagcaaa 535
Query: 1352 tgtagaacaagcatttatgattatggctagtgaaattaaaaagttacaaggtggtattca 1411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 tgtagaacaagcatttatgattatggctagtgaaattaaaaagttacaaggtggtattca 595
Query: 1412 accaaataacaactccacttacaatgctcatgttgttaaaccaactggtttcactccaat 1471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 596 accaaataacaactccacttacaatgctcatgttgttaaaccaactggtttcactccaat 655
Query: 1472 tggtaaaaagaagaaatgttcaatcatataaatgtatcgttggttactcctccccttttt 1531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 tggtaaaaagaagaaatgttcaatcatataaatgtatcgttggttactcctccccttttt 715
Query: 1532 tttcaataatc 1542 ||||||||||| Sbjct: 716 tttcaataatc 726
Score = 123 bits (62), Expect(3) = 0.0 Identities = 68/70 (97%) Strand = Plus / Plus
Query: 886 ccagaatacgattatcttttcaaattactcttaatcggtgatagtggtgtaggtaaatca 945 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 72 ccagaatacgattatcttttcaaattacttttaatcggtgatagtggtgtaggtaaatca 131
Query: 946 tgttaattac 955 |||| ||||| Sbjct: 132 tgtttattac 141
Score = 71.9 bits (36), Expect(3) = 0.0 Identities = 36/36 (100%) Strand = Plus / Plus
Query: 956 cttagatttgcagatgatacatatacagagagttat 991 |||||||||||||||||||||||||||||||||||| Sbjct: 141 cttagatttgcagatgatacatatacagagagttat 176
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,660,600,822 Number of extensions: 97674440 Number of successful extensions: 7704073 Number of sequences better than 10.0: 8659 Length of query: 1637 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1613 Effective length of database: 97,308,875,965 Effective search space: 156959216931545 Effective search space used: 156959216931545 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 2 |
Homology vs Protein |
Query= Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Contig-U12243-1Q.Seq.d (1637 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
(P34140) RecName: Full=Ras-related protein Rab-1B; 339 e-101 L21010_1(L21010|pid:none) Dictyostelium discoideum Rab1B mRNA, 3... 330 5e-96 BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342... 229 2e-68 EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related... 228 3e-68 AF101310_4(AF101310|pid:none) Caenorhabditis elegans cosmid C39F... 227 6e-68 (P22125) RecName: Full=Ras-related protein ORAB-1; &M38393_1(M3... 227 6e-68 BC045014_1(BC045014|pid:none) Xenopus laevis RAB1, member RAS on... 226 8e-68 DQ214474_1(DQ214474|pid:none) Taeniopygia guttata clone 0063P003... 225 2e-67 (P62820) RecName: Full=Ras-related protein Rab-1A; AltName: Full... 225 2e-67 AL606522_3(AL606522|pid:none) Mouse DNA sequence from clone RP23... 225 2e-67 (Q52NJ2) RecName: Full=Ras-related protein Rab-1A; &AY996813_1(... 225 2e-67 J02998_1(J02998|pid:none) Rat ras-related protein mRNA, clone NT... 224 3e-67 BT057068_1(BT057068|pid:none) Salmo salar clone ssal-eve-570-039... 224 3e-67 AK151085_1(AK151085|pid:none) Mus musculus bone marrow macrophag... 224 4e-67 AE014297_3082(AE014297|pid:none) Drosophila melanogaster chromos... 224 5e-67 (Q05974) RecName: Full=Ras-related protein Rab-1A; &S38339(S383... 224 6e-67 DQ214475_1(DQ214475|pid:none) Taeniopygia guttata clone 0058P004... 223 8e-67 S06147(S06147;S03189)GTP-binding protein rab1B - rat 223 8e-67 AK129477_1(AK129477|pid:none) Mus musculus mRNA for mKIAA3012 pr... 223 1e-66 D38625(D38625)GTP-binding protein o-rab1 - electric ray (Discopy... 223 1e-66 BT078127_1(BT078127|pid:none) Lepeophtheirus salmonis Pacific fo... 222 1e-66 AF013572_1(AF013572|pid:none) Bombyx mori small GTP-binding prot... 222 2e-66 BT077899_1(BT077899|pid:none) Lepeophtheirus salmonis Pacific fo... 222 3e-66 BT077861_1(BT077861|pid:none) Lepeophtheirus salmonis Pacific fo... 221 4e-66 (Q5RE13) RecName: Full=Ras-related protein Rab-1B; &(Q9H0U4) Re... 221 4e-66 BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ... 222 5e-66 CR533462_1(CR533462|pid:none) Homo sapiens full open reading fra... 221 9e-66 (Q2HJH2) RecName: Full=Ras-related protein Rab-1B; &BC105393_1(... 219 9e-66 (Q9D1G1) RecName: Full=Ras-related protein Rab-1B; &AB232584_1(... 219 1e-65 (P10536) RecName: Full=Ras-related protein Rab-1B; &X13905_1(X1... 219 2e-65 BT076429_1(BT076429|pid:none) Caligus rogercresseyi clone crog-e... 219 2e-65 AK042020_1(AK042020|pid:none) Mus musculus 3 days neonate thymus... 219 2e-65 (Q39571) RecName: Full=GTP-binding protein YPTC1; &DQ222936_1(D... 215 2e-64 (P33723) RecName: Full=GTP-binding protein ypt1; &AL356324_15(A... 215 2e-64 GN106121_1(GN106121|pid:none) Sequence 10902 from Patent WO20090... 215 2e-64 (Q01890) RecName: Full=Ras-like GTP-binding protein YPT1; &JC53... 215 2e-64 DQ414556_1(DQ414556|pid:none) Suberites domuncula Rab1 gene, com... 216 3e-64 AJ278659_1(AJ278659|pid:none) Aspergillus niger srgB gene for a ... 214 3e-64 AJ277108_1(AJ277108|pid:none) Trichoderma reesei ypt1 gene for s... 214 4e-64 CP001323_241(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 214 5e-64 (P34139) RecName: Full=Ras-related protein Rab-1A; 221 5e-64 AF244545_1(AF244545|pid:none) Aspergillus awamori YptA (yptA) ge... 214 5e-64 Y08425_1(Y08425|pid:none) N.plumbaginifolia mRNA for small GTP-b... 217 8e-64 EF147099_1(EF147099|pid:none) Populus trichocarpa clone WS01227_... 222 1e-63 BT081293_1(BT081293|pid:none) Caligus clemensi clone ccle-evs-51... 212 2e-63 (P11620) RecName: Full=GTP-binding protein ypt1; &AL136536_10(A... 211 2e-63 GM977155_1(GM977155|pid:none) Sequence 63 from Patent WO20081456... 221 3e-63 EF086613_1(EF086613|pid:none) Picea sitchensis clone WS02920_I20... 217 4e-63 Z73932_1(Z73932|pid:none) L.japonicus mRNA for small GTP-binding... 216 4e-63 GM977167_1(GM977167|pid:none) Sequence 75 from Patent WO20081456... 220 4e-63 D12547_1(D12547|pid:none) Pisum sativum mRNA for GTP-binding pro... 221 5e-63 BT070553_1(BT070553|pid:none) Picea sitchensis clone WS02735_N04... 214 5e-63 BT070586_1(BT070586|pid:none) Picea sitchensis clone WS02737_M21... 214 7e-63 GN106103_1(GN106103|pid:none) Sequence 10884 from Patent WO20090... 219 8e-63 GN106077_1(GN106077|pid:none) Sequence 10858 from Patent WO20090... 214 1e-62 GN105857_1(GN105857|pid:none) Sequence 10638 from Patent WO20090... 216 2e-62 EF146669_1(EF146669|pid:none) Populus trichocarpa clone WS01211_... 212 2e-62 D12548_1(D12548|pid:none) Pisum sativum mRNA for GTP-binding pro... 213 3e-62 GN106111_1(GN106111|pid:none) Sequence 10892 from Patent WO20090... 213 3e-62 BC150404_1(BC150404|pid:none) Danio rerio zgc:171927, mRNA (cDNA... 207 4e-62 AJ810707_1(AJ810707|pid:none) Poa pratensis mRNA for RAB1-like (... 211 5e-62 BT051367_1(BT051367|pid:none) Medicago truncatula clone MTYF1_F2... 212 5e-62 EU284879_1(EU284879|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 211 5e-62 BT052509_1(BT052509|pid:none) Medicago truncatula clone MTYFD_FE... 211 7e-62 CR382130_329(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 210 7e-62 GN105981_1(GN105981|pid:none) Sequence 10762 from Patent WO20090... 216 2e-61 GN105977_1(GN105977|pid:none) Sequence 10758 from Patent WO20090... 209 2e-61 S34253(S34253) GTP-binding protein, ras-related - common tobacco... 207 2e-61 GN106061_1(GN106061|pid:none) Sequence 10842 from Patent WO20090... 214 2e-61 AC159407_36(AC159407|pid:none) Trypanosoma brucei chromosome 8 c... 211 3e-61 GM977161_1(GM977161|pid:none) Sequence 69 from Patent WO20081456... 208 3e-61 DQ372931_1(DQ372931|pid:none) Pinus pinaster Rab1 mRNA, complete... 213 3e-61 AM494964_85(AM494964|pid:none) Leishmania braziliensis chromosom... 210 3e-61 GN106117_1(GN106117|pid:none) Sequence 10898 from Patent WO20090... 209 3e-61 CP000587_71(CP000587|pid:none) Ostreococcus lucimarinus CCE9901 ... 208 3e-61 GM977163_1(GM977163|pid:none) Sequence 71 from Patent WO20081456... 215 4e-61 GN106155_1(GN106155|pid:none) Sequence 10936 from Patent WO20090... 209 4e-61 (P40392) RecName: Full=Ras-related protein RIC1; &AK243597_1(AK... 207 4e-61 GN106151_1(GN106151|pid:none) Sequence 10932 from Patent WO20090... 207 6e-61 (Q92928) RecName: Full=Putative Ras-related protein Rab-1C; ... 212 6e-61 D12549_1(D12549|pid:none) Pisum sativum mRNA for GTP-binding pro... 206 1e-60 L12031_1(L12031|pid:none) Leishmania major V121 GTP-binding prot... 209 1e-60 DQ397201_1(DQ397201|pid:none) Saccharum officinarum small GTP bi... 213 2e-60 GN080095_1(GN080095|pid:none) Sequence 698 from Patent WO2009027... 213 2e-60 EF144402_1(EF144402|pid:none) Populus trichocarpa clone PX0019_E... 206 2e-60 AE017352_188(AE017352|pid:none) Cryptococcus neoformans var. neo... 202 2e-60 GN105853_1(GN105853|pid:none) Sequence 10634 from Patent WO20090... 207 2e-60 AC183496_25(AC183496|pid:none) Brassica oleracea, *** SEQUENCING... 207 2e-60 GN080089_1(GN080089|pid:none) Sequence 692 from Patent WO2009027... 207 2e-60 GN106059_1(GN106059|pid:none) Sequence 10840 from Patent WO20090... 206 2e-60 CP000497_244(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 208 2e-60 CR382124_213(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 207 2e-60 BT034664_1(BT034664|pid:none) Zea mays full-length cDNA clone ZM... 206 2e-60 B86153(B86153) ARA-5 [imported] - Arabidopsis thaliana &U89959_... 206 3e-60 CS560194_1(CS560194|pid:none) Sequence 781 from Patent WO2006032... 206 3e-60 GN106197_1(GN106197|pid:none) Sequence 10978 from Patent WO20090... 206 3e-60 BT039522_1(BT039522|pid:none) Zea mays full-length cDNA clone ZM... 206 3e-60 EF091876_1(EF091876|pid:none) Solanum tuberosum ras-related GTP ... 203 3e-60 CS559708_1(CS559708|pid:none) Sequence 295 from Patent WO2006032... 206 3e-60 GN080135_1(GN080135|pid:none) Sequence 738 from Patent WO2009027... 212 4e-60 GM977145_1(GM977145|pid:none) Sequence 53 from Patent WO20081456... 208 4e-60 AJ307662_21(AJ307662|pid:none) Oryza sativa genomic DNA fragment... 206 4e-60 AK059888_1(AK059888|pid:none) Oryza sativa Japonica Group cDNA c... 206 4e-60 GN106165_1(GN106165|pid:none) Sequence 10946 from Patent WO20090... 204 4e-60 AY060495_1(AY060495|pid:none) Arabidopsis thaliana AT4g17530/dl4... 206 4e-60 FM992688_325(FM992688|pid:none) Candida dubliniensis CD36 chromo... 206 6e-60 AF330211_1(AF330211|pid:none) Candida albicans small GTP-binding... 206 6e-60 AC140549_18(AC140549|pid:none) Medicago truncatula clone mth2-28... 211 8e-60 AF108883_1(AF108883|pid:none) Capsicum annuum small GTP-binding ... 204 8e-60 GN105859_1(GN105859|pid:none) Sequence 10640 from Patent WO20090... 204 8e-60 EF145603_1(EF145603|pid:none) Populus trichocarpa clone WS01126_... 203 1e-59 AC104285_6(AC104285|pid:none) Oryza sativa (japonica cultivar-gr... 214 1e-59 (Q9ZRE2) RecName: Full=Ras-related protein RABD1; AltName: Full=... 209 1e-59 L48181_1(L48181|pid:none) Brassica campestris L. pekinensis ypt-... 209 2e-59 AC183493_34(AC183493|pid:none) Brassica oleracea Contig B, compl... 202 4e-59 GN106013_1(GN106013|pid:none) Sequence 10794 from Patent WO20090... 202 4e-59 GN105983_1(GN105983|pid:none) Sequence 10764 from Patent WO20090... 202 5e-59 AP007162_533(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 199 7e-59 AF324990_1(AF324990|pid:none) Arabidopsis thaliana AT5g47200 (AT... 201 9e-59 AP008208_2028(AP008208|pid:none) Oryza sativa (japonica cultivar... 206 2e-58 BT071594_1(BT071594|pid:none) Picea sitchensis clone WS02926_J12... 207 4e-58 GM977157_1(GM977157|pid:none) Sequence 65 from Patent WO20081456... 201 5e-58 GM977149_1(GM977149|pid:none) Sequence 57 from Patent WO20081456... 201 5e-58 EU069503_1(EU069503|pid:none) Gymnochlora stellata Rab1B mRNA, c... 201 9e-58 FN392321_231(FN392321|pid:none) Pichia pastoris GS115 chromosome... 199 9e-58 AY321327_1(AY321327|pid:none) Rattus norvegicus Ac2-048 mRNA, co... 226 1e-57 CU928171_789(CU928171|pid:none) Kluyveromyces thermotolerans str... 199 2e-57 AE016815_434(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 196 6e-57 X00209_2(X00209|pid:none) Yeast YP2 gene The YP2 protein shows h... 197 2e-56 (P01123) RecName: Full=GTP-binding protein YPT1; AltName: Full=R... 197 2e-56 D01027_1(D01027|pid:none) Arabidopsis thaliana mRNA for small GT... 206 4e-56 CR380957_540(CR380957|pid:none) Candida glabrata strain CBS138 c... 196 5e-56 Z73931_1(Z73931|pid:none) L.japonicus mRNA for small GTP-binding... 204 5e-56 AF542024_1(AF542024|pid:none) Griffithsia japonica GTP-binding p... 187 4e-55 FN320591_1(FN320591|pid:none) Schistosoma japonicum isolate Anhu... 192 5e-55 AY223134_1(AY223134|pid:none) Schistosoma japonicum SJCHGC02833 ... 192 7e-55 DQ222937_1(DQ222937|pid:none) Chlamydomonas incerta YptC1 (yptC1... 213 1e-53 BC103436_1(BC103436|pid:none) Bos taurus RAB1A, member RAS oncog... 185 4e-53 FN315276_1(FN315276|pid:none) Schistosoma japonicum isolate Anhu... 185 8e-53 AC183498_22(AC183498|pid:none) Brassica oleracea, *** SEQUENCING... 188 1e-52 AB241241_1(AB241241|pid:none) Symbiotic protist of Reticuliterme... 198 2e-52 AB241242_1(AB241242|pid:none) Symbiotic protist of Reticuliterme... 197 3e-52 (P20790) RecName: Full=Ras-related protein Rab-8A; AltName: Full... 188 6e-52 FN357538_13(FN357538|pid:none) Schistosoma mansoni genome sequen... 187 2e-51 AM910992_200(AM910992|pid:none) Plasmodium knowlesi strain H chr... 180 5e-51 (P20791) RecName: Full=Ras-related protein Rab-8B; AltName: Full... 187 7e-51 AB054578_1(AB054578|pid:none) Entamoeba histolytica EhRab1A mRNA... 179 2e-50 AC183495_42(AC183495|pid:none) Brassica oleracea Contig A, compl... 202 3e-50 (O76173) RecName: Full=Ras-related protein Rab-1C; &AB015237_1(... 180 1e-49 DQ393575_1(DQ393575|pid:none) Metarhizium anisopliae RAB/GTPase ... 182 1e-49 AB241243_1(AB241243|pid:none) Symbiotic protist of Reticuliterme... 187 1e-49 AJ272025_1(AJ272025|pid:none) Colletotrichum lindemuthianum pt1 ... 181 4e-49 AB241230_1(AB241230|pid:none) Dinenympha exilis RsSmRab1_2 mRNA ... 187 5e-49 AB241220_1(AB241220|pid:none) Pyrsonympha grandis RsSmRab1_1 mRN... 185 2e-48 AL162751_30(AL162751|pid:none) Arabidopsis thaliana DNA chromoso... 172 5e-48 BT035355_1(BT035355|pid:none) Zea mays full-length cDNA clone ZM... 174 6e-48 AJ278658_1(AJ278658|pid:none) Aspergillus niger srgA gene for a ... 175 1e-47 AY087058_1(AY087058|pid:none) Arabidopsis thaliana clone 3115 mR... 171 2e-47 AK104346_1(AK104346|pid:none) Oryza sativa Japonica Group cDNA c... 174 2e-47 GN105821_1(GN105821|pid:none) Sequence 10602 from Patent WO20090... 171 2e-47 BT070243_1(BT070243|pid:none) Picea sitchensis clone WS02711_M12... 171 3e-47 GN106091_1(GN106091|pid:none) Sequence 10872 from Patent WO20090... 172 3e-47 S57478(S57478) GTP-binding protein GTP13 - garden pea &Z49902_1... 172 3e-47 GN106033_1(GN106033|pid:none) Sequence 10814 from Patent WO20090... 172 3e-47 AY576526_1(AY576526|pid:none) Oryza sativa (japonica cultivar-gr... 172 3e-47 AC117265_12(AC117265|pid:none) Oryza sativa (japonica cultivar-g... 171 5e-47 AF096249_1(AF096249|pid:none) Lycopersicon esculentum ethylene-r... 171 5e-47 AB079020_1(AB079020|pid:none) Nicotiana tabacum mRNA for ras-rel... 171 5e-47 AC125368_16(AC125368|pid:none) Medicago truncatula clone mth2-13... 171 5e-47 GM977117_1(GM977117|pid:none) Sequence 25 from Patent WO20081456... 171 5e-47 CR932686_1(CR932686|pid:none) Paramecium tetraurelia, Small GTPa... 176 5e-47 AY896243_1(AY896243|pid:none) Trichomonas vaginalis strain G3 sm... 176 5e-47 (Q54E92) RecName: Full=Ras-related protein RabG1; 186 5e-47 (Q92930) RecName: Full=Ras-related protein Rab-8B; &AB038995_1(... 170 7e-47 AB112933_1(AB112933|pid:none) Drosophila melanogaster rab8 mRNA ... 170 7e-47 BC142846_1(BC142846|pid:none) Danio rerio RAB8B, member RAS onco... 170 9e-47 BC134059_1(BC134059|pid:none) Danio rerio RAB8A, member RAS onco... 170 9e-47 GM977153_1(GM977153|pid:none) Sequence 61 from Patent WO20081456... 170 1e-46 EF144772_1(EF144772|pid:none) Populus trichocarpa clone WS01118_... 170 1e-46 (P22128) RecName: Full=Ras-related protein Rab-8; AltName: Full=... 169 1e-46 GN106051_1(GN106051|pid:none) Sequence 10832 from Patent WO20090... 169 2e-46 AE017343_437(AE017343|pid:none) Cryptococcus neoformans var. neo... 171 2e-46 AB015475_6(AB015475|pid:none) Arabidopsis thaliana genomic DNA, ... 169 2e-46 BC127330_1(BC127330|pid:none) Xenopus tropicalis RAB8B, member R... 169 2e-46 BC135798_1(BC135798|pid:none) Xenopus tropicalis RAB8B, member R... 169 2e-46 S33900(S33900;JQ2233) GTP-binding protein ypt2 - tomato &X69980... 170 3e-46 GN106127_1(GN106127|pid:none) Sequence 10908 from Patent WO20090... 170 3e-46 AJ001367_1(AJ001367|pid:none) Daucus carota mRNA for Rab8-like s... 169 3e-46 AB079024_1(AB079024|pid:none) Nicotiana tabacum mRNA for ras-rel... 169 3e-46 GN106049_1(GN106049|pid:none) Sequence 10830 from Patent WO20090... 169 3e-46 Z73946_1(Z73946|pid:none) L.japonicus mRNA for small GTP-binding... 169 3e-46 BT080552_1(BT080552|pid:none) Caligus clemensi clone ccle-evs-51... 168 3e-46 BT070448_1(BT070448|pid:none) Picea sitchensis clone WS0272_O15 ... 169 3e-46 GN106009_1(GN106009|pid:none) Sequence 10790 from Patent WO20090... 168 3e-46 GN106021_1(GN106021|pid:none) Sequence 10802 from Patent WO20090... 168 3e-46 BT081291_1(BT081291|pid:none) Caligus clemensi clone ccle-evs-51... 168 3e-46 (Q2HJI8) RecName: Full=Ras-related protein Rab-8B; &BC105330_1(... 167 4e-46 BC078493_1(BC078493|pid:none) Xenopus laevis MGC85265 protein, m... 167 4e-46 GM977141_1(GM977141|pid:none) Sequence 49 from Patent WO20081456... 167 6e-46 GM977111_1(GM977111|pid:none) Sequence 19 from Patent WO20081456... 169 7e-46 S51495(S51495;S70850)GTP-binding protein RYL1 - yeast (Yarrowia ... 170 8e-46 AL117202_29(AL117202|pid:none) Caenorhabditis elegans YAC Y47D3A... 168 9e-46 S57474(S57474) GTP-binding protein - garden pea &Z49899_1(Z4989... 172 1e-45 T33855(T33855)hypothetical protein D1037.4 - Caenorhabditis eleg... 166 1e-45 GN105943_1(GN105943|pid:none) Sequence 10724 from Patent WO20090... 166 1e-45 GN106011_1(GN106011|pid:none) Sequence 10792 from Patent WO20090... 166 1e-45 AB112929_1(AB112929|pid:none) Caenorhabditis elegans rab8 mRNA f... 166 1e-45 AY324134_1(AY324134|pid:none) Babesia bovis Rab1a mRNA, complete... 161 2e-45 CR954205_238(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 169 2e-45 CR932696_1(CR932696|pid:none) Paramecium tetraurelia, Small GTPa... 172 2e-45 BC071442_1(BC071442|pid:none) Danio rerio zgc:86773, mRNA (cDNA ... 152 2e-45 AB018117_6(AB018117|pid:none) Arabidopsis thaliana genomic DNA, ... 186 2e-45 (P35280) RecName: Full=Ras-related protein Rab-8A; &(P55258) Re... 165 2e-45 AK147178_1(AK147178|pid:none) Mus musculus 17 days pregnant adul... 165 2e-45 CR933412_1(CR933412|pid:none) Paramecium tetraurelia, Small GTPa... 166 3e-45 (Q5KTJ6) RecName: Full=Ras-related protein Rab-13; &AB158369_1(... 167 3e-45 BX538352_67(BX538352|pid:none) Cryptosporidium parvum chromosome... 164 4e-45 (Q9DD03) RecName: Full=Ras-related protein Rab-13; &AK002303_1(... 166 4e-45 AY232027_1(AY232027|pid:none) Drosophila yakuba clone yak-ad_Rab... 150 5e-45 CR933446_1(CR933446|pid:none) Paramecium tetraurelia, Small GTPa... 166 5e-45 CR932639_1(CR932639|pid:none) Paramecium tetraurelia, Small GTPa... 170 6e-45 AY892042_1(AY892042|pid:none) Synthetic construct Homo sapiens c... 164 6e-45 B38625(B38625)GTP-binding protein ora2 - electric ray (Discopyge... 163 8e-45 (Q58DS5) RecName: Full=Ras-related protein Rab-13; &BT021522_1(... 165 8e-45 BC094846_1(BC094846|pid:none) Homo sapiens RAB13, member RAS onc... 165 1e-44 BT080187_1(BT080187|pid:none) Caligus clemensi clone ccle-evs-50... 164 1e-44 AY893729_1(AY893729|pid:none) Synthetic construct Homo sapiens c... 165 1e-44 (P51153) RecName: Full=Ras-related protein Rab-13; AltName: Full... 165 1e-44 DQ414573_1(DQ414573|pid:none) Suberites domuncula Rab35 gene, co... 166 1e-44 BC129421_1(BC129421|pid:none) Danio rerio zgc:158741, mRNA (cDNA... 163 1e-44 AB232608_1(AB232608|pid:none) Mus musculus mRNA for Rab13, compl... 164 1e-44 EU069501_1(EU069501|pid:none) Gymnochlora stellata Rab1A1 mRNA, ... 157 2e-44 S53268_1(S53268|pid:none) Homo sapiens RAS-related protein MEL (... 162 2e-44 I78851(I78851) GTP-binding protein MEL - mouse &S53270_1(S53270... 162 2e-44 AK297598_1(AK297598|pid:none) Homo sapiens cDNA FLJ52970 complet... 162 2e-44 BC060015_1(BC060015|pid:none) Xenopus laevis hypothetical protei... 164 3e-44 (P34141) RecName: Full=Ras-related protein RabA; 167 4e-44 CR859178_1(CR859178|pid:none) Pongo abelii mRNA; cDNA DKFZp459K2... 164 5e-44 (P61026) RecName: Full=Ras-related protein Rab-10; &(P61027) Re... 164 5e-44 AK008725_1(AK008725|pid:none) Mus musculus adult male stomach cD... 164 5e-44 L21011_1(L21011|pid:none) Dictyostelium discoideum RabA mRNA, 3'... 164 8e-44 AL136650_1(AL136650|pid:none) Homo sapiens mRNA; cDNA DKFZp564L1... 163 9e-44 BT044760_1(BT044760|pid:none) Salmo salar clone ssal-rgf-502-322... 162 1e-43 (P24409) RecName: Full=Ras-related protein Rab-10; &D36364(D363... 162 1e-43 (Q5R4A3) RecName: Full=Ras-related protein Rab-8A; &CR861352_1(... 159 2e-43 (Q9TVU5) RecName: Full=Ras-related protein Rab-1; AltName: Full=... 158 2e-43 AM910992_188(AM910992|pid:none) Plasmodium knowlesi strain H chr... 155 3e-43 AY893660_1(AY893660|pid:none) Synthetic construct Homo sapiens c... 161 4e-43 DQ414563_1(DQ414563|pid:none) Suberites domuncula Rab10 gene, co... 160 7e-43 DQ440351_1(DQ440351|pid:none) Aedes aegypti clone AET-452 RAB pr... 160 7e-43 BT076103_1(BT076103|pid:none) Caligus rogercresseyi clone crog-e... 160 7e-43 BC077124_1(BC077124|pid:none) Danio rerio zgc:100812, mRNA (cDNA... 160 9e-43 DQ443136_1(DQ443136|pid:none) Bombyx mori small GTP binding prot... 163 1e-42 EU244427_1(EU244427|pid:none) Capra hircus RAB1A-like protein mR... 141 2e-42 AY231907_1(AY231907|pid:none) Drosophila yakuba clone yak-em_Rab... 141 2e-42 (P22127) RecName: Full=Ras-related protein Rab-10; Shor... 159 2e-42 BC009227_1(BC009227|pid:none) Homo sapiens RAB13, member RAS onc... 165 2e-42 AJ237914_1(AJ237914|pid:none) Plasmodium falciparum putative rab... 152 3e-42 AF201953_1(AF201953|pid:none) Plasmodium falciparum isolate FCC1... 152 3e-42 EU960755_1(EU960755|pid:none) Zea mays clone 228324 unknown mRNA. 145 3e-42 AP008213_447(AP008213|pid:none) Oryza sativa (japonica cultivar-... 174 5e-42 BC124978_1(BC124978|pid:none) Xenopus laevis hypothetical protei... 156 5e-42 EF125738_1(EF125738|pid:none) Nyctotherus ovalis Rab A61 gene, c... 155 6e-42 AJ851375_1(AJ851375|pid:none) Gallus gallus mRNA for hypothetica... 157 6e-42 U41269_1(U41269|pid:none) Plasmodium falciparum Rab1 protein (Pf... 151 7e-42 AB006189_1(AB006189|pid:none) Drosophila melanogaster mRNA for R... 156 8e-42 BC099268_1(BC099268|pid:none) Xenopus laevis similar to RAB35, m... 156 1e-41 BC068969_1(BC068969|pid:none) Xenopus laevis similar to RAB35, m... 156 1e-41 BC041759_1(BC041759|pid:none) Xenopus laevis similar to RAB35, m... 156 1e-41 BC061274_1(BC061274|pid:none) Xenopus tropicalis hypothetical pr... 156 1e-41 DQ286060_1(DQ286060|pid:none) Hydra vulgaris RAS related GTP-bin... 151 3e-41 BC057747_1(BC057747|pid:none) Xenopus laevis hypothetical protei... 154 3e-41 FN357316_32(FN357316|pid:none) Schistosoma mansoni genome sequen... 155 5e-41 Z73945_1(Z73945|pid:none) L.japonicus mRNA for small GTP-binding... 171 7e-41 (P35281) RecName: Full=Ras-related protein Rab-10; &M83677_1(M8... 152 1e-40 AY439005_1(AY439005|pid:none) Fucus distichus Rab family GTPase ... 159 3e-40 FN359283_3(FN359283|pid:none) Schistosoma mansoni genome sequenc... 159 3e-40 CR932630_1(CR932630|pid:none) Paramecium tetraurelia, Small GTPa... 149 4e-40 CR932581_1(CR932581|pid:none) Paramecium tetraurelia, Small GTPa... 156 4e-40 FN314406_1(FN314406|pid:none) Schistosoma japonicum isolate Anhu... 150 4e-40 FN314407_1(FN314407|pid:none) Schistosoma japonicum isolate Anhu... 150 4e-40 (Q39570) RecName: Full=GTP-binding protein YPTC4; &JC4106(JC410... 154 4e-40 T28971(T28971) hypothetical protein T23H2.5 - Caenorhabditis ele... 150 4e-40 AF389109_1(AF389109|pid:none) Entamoeba histolytica small GTP-bi... 159 9e-40 (Q558I0) RecName: Full=Ras-related protein RabF1; 156 9e-40 AY815772_1(AY815772|pid:none) Schistosoma japonicum SJCHGC09130 ... 148 2e-39 (P07560) RecName: Full=Ras-related protein SEC4; AltName: Full=S... 151 3e-39 AY220456_1(AY220456|pid:none) Limulus polyphemus rab11-2 mRNA, c... 147 4e-39 AY815506_1(AY815506|pid:none) Schistosoma japonicum SJCHGC02859 ... 146 5e-39 BT078096_1(BT078096|pid:none) Lepeophtheirus salmonis Pacific fo... 148 6e-39 AE014296_1491(AE014296|pid:none) Drosophila melanogaster chromos... 152 6e-39 AC139707_26(AC139707|pid:none) Medicago truncatula clone mth2-16... 150 6e-39 AF127669_1(AF127669|pid:none) Mus musculus small GTPase (Rab11a)... 146 8e-39 BC081187_1(BC081187|pid:none) Xenopus laevis MGC84419 protein, m... 146 8e-39 BT051484_1(BT051484|pid:none) Medicago truncatula clone MTYF1_F2... 144 8e-39 AB035354_1(AB035354|pid:none) Drosophila melanogaster mRNA for D... 145 1e-38 BT001785_1(BT001785|pid:none) Drosophila melanogaster RH21315 fu... 145 1e-38 BT056265_1(BT056265|pid:none) Drosophila melanogaster FI09227 fu... 145 1e-38 (O14462) RecName: Full=Ras-related protein SEC4; &AF015306_1(AF... 148 1e-38 (P22129) RecName: Full=Ras-related protein Rab-11B; AltName: Ful... 145 1e-38 CR382138_325(CR382138|pid:none) Debaryomyces hansenii strain CBS... 148 1e-38 CP000499_197(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 147 2e-38 AY813938_1(AY813938|pid:none) Schistosoma japonicum SJCHGC06150 ... 145 2e-38 CR932504_1(CR932504|pid:none) Paramecium tetraurelia, Small GTPa... 147 2e-38 BT077510_1(BT077510|pid:none) Lepeophtheirus salmonis Pacific fo... 145 2e-38 BT045814_1(BT045814|pid:none) Salmo salar clone ssal-rgf-532-060... 144 2e-38 CR932510_1(CR932510|pid:none) Paramecium tetraurelia, Small GTPa... 152 2e-38 EF366951_1(EF366951|pid:none) Phytophthora infestans isolate B04... 162 3e-38 AC116984_79(AC116984|pid:none) Dictyostelium discoideum chromoso... 156 3e-38 AJ851582_1(AJ851582|pid:none) Gallus gallus mRNA for hypothetica... 144 3e-38 BC082421_1(BC082421|pid:none) Xenopus laevis hypothetical LOC494... 144 3e-38 BC076437_1(BC076437|pid:none) Danio rerio RAB30, member RAS onco... 145 3e-38 DQ414564_1(DQ414564|pid:none) Suberites domuncula Rab11 gene, co... 145 4e-38 (Q2TA29) RecName: Full=Ras-related protein Rab-11A; &BC111143_1... 144 4e-38 EU244432_1(EU244432|pid:none) Capra hircus RAB11B (rab11b) mRNA,... 143 5e-38 AY894025_1(AY894025|pid:none) Synthetic construct Homo sapiens c... 143 5e-38 EF560724_1(EF560724|pid:none) Homo sapiens clone DKFZp564C1023 R... 143 5e-38 (P46638) RecName: Full=Ras-related protein Rab-11B; &A55005(A55... 143 5e-38 CR541691_1(CR541691|pid:none) Homo sapiens full open reading fra... 143 5e-38 (O35509) RecName: Full=Ras-related protein Rab-11B; &(Q15907) R... 143 5e-38 D42148(D42148) GTP-binding protein rab13 - rat (fragment) &M836... 161 6e-38 JC2487(JC2487) GTP-binding protein H-YPT3 - human &X79780_1(X79... 143 7e-38 EF145933_1(EF145933|pid:none) Populus trichocarpa clone WS0114_G... 143 7e-38 CR382125_525(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 147 7e-38 BC048889_1(BC048889|pid:none) Danio rerio RAB11B, member RAS onc... 144 8e-38 BC087498_1(BC087498|pid:none) Xenopus laevis hypothetical LOC496... 142 8e-38 BC075268_1(BC075268|pid:none) Xenopus tropicalis RAB11B, member ... 142 8e-38 BC041250_1(BC041250|pid:none) Xenopus laevis RAB11B, member RAS ... 142 8e-38 Z73937_1(Z73937|pid:none) L.japonicus mRNA for small GTP-binding... 146 9e-38 AL161545_37(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 146 9e-38 (P36409) RecName: Full=Ras-related protein Rab-2A; 147 9e-38 E71440(E71440)GTP-binding protein RAB2A - Arabidopsis thaliana 146 9e-38 DQ836048_1(DQ836048|pid:none) Trichomonas vaginalis small Rab GT... 145 9e-38 BC152630_1(BC152630|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 144 1e-37 BC076247_1(BC076247|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 144 1e-37 CR536494_1(CR536494|pid:none) Homo sapiens full open reading fra... 142 1e-37 AY220749_1(AY220749|pid:none) Limulus polyphemus Rab11-1a mRNA, ... 142 1e-37 EF678326_1(EF678326|pid:none) Picea sitchensis clone WS02914_M23... 142 1e-37 AC161399_25(AC161399|pid:none) Medicago truncatula chromosome 2 ... 146 1e-37 BC097569_1(BC097569|pid:none) Xenopus laevis hypothetical protei... 145 1e-37 CP000582_359(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 144 1e-37 L35845_1(L35845|pid:none) Oryza sativa small GTP-binding protein... 145 1e-37 AM471469_2(AM471469|pid:none) Vitis vinifera contig VV78X014719.... 143 1e-37 (A4D1S5) RecName: Full=Ras-related protein Rab-19; &BC140796_1(... 144 1e-37 BT049157_1(BT049157|pid:none) Salmo salar clone ssal-rgb2-591-24... 143 1e-37 AY220748_1(AY220748|pid:none) Limulus polyphemus Rab11-1c mRNA, ... 142 1e-37 S71559(S71559) GTP-binding protein rab2 - soybean &U32185_1(U32... 145 1e-37 (P49103) RecName: Full=Ras-related protein Rab-2-A; &T02242(T02... 145 1e-37 CR932514_1(CR932514|pid:none) Paramecium tetraurelia, Small GTPa... 146 2e-37 (Q39572) RecName: Full=Ras-related protein YPTC6; &JC4108(JC410... 142 2e-37 EU954271_1(EU954271|pid:none) Zea mays clone 1460642 ras-related... 141 2e-37 BC055141_1(BC055141|pid:none) Danio rerio zgc:63565, mRNA (cDNA ... 141 2e-37 EU069500_1(EU069500|pid:none) Karlodinium micrum Rab1D mRNA, com... 149 2e-37 AF014120_1(AF014120|pid:none) Strongylocentrotus purpuratus GTP-... 149 2e-37 AY904354_1(AY904354|pid:none) Gracilariopsis lemaneiformis small... 147 2e-37 AK051218_1(AK051218|pid:none) Mus musculus 12 days embryo spinal... 138 2e-37 DQ157704_1(DQ157704|pid:none) Aiptasia pulchella Rab11 protein m... 140 3e-37 AC084818_20(AC084818|pid:none) Oryza sativa (japonica cultivar-g... 140 3e-37 AF003139_1(AF003139|pid:none) Caenorhabditis elegans cosmid F53G... 140 3e-37 AY896281_1(AY896281|pid:none) Trichomonas vaginalis strain G3 sm... 144 3e-37 AK297498_1(AK297498|pid:none) Homo sapiens cDNA FLJ61134 complet... 140 4e-37 AB028161_1(AB028161|pid:none) Giardia intestinalis GlRabA mRNA f... 158 5e-37 AC140549_17(AC140549|pid:none) Medicago truncatula clone mth2-28... 140 5e-37 AC124143_12(AC124143|pid:none) Oryza sativa (japonica cultivar-g... 141 5e-37 CR954202_213(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 141 5e-37 DQ525204_1(DQ525204|pid:none) Bombyx mori ras-related GTP-bindin... 147 7e-37 L49400_1(L49400|pid:none) Loligo pealii Rab3 gene, complete cds. 147 7e-37 AJ518934_1(AJ518934|pid:none) Hordeum vulgare subsp. vulgare mRN... 143 7e-37 AM462529_1(AM462529|pid:none) Vitis vinifera contig VV78X101776.... 140 7e-37 AL021710_9(AL021710|pid:none) Arabidopsis thaliana DNA chromosom... 139 7e-37 (P49104) RecName: Full=Ras-related protein Rab-2-B; &BT068076_1... 143 7e-37 DQ397202_1(DQ397202|pid:none) Saccharum officinarum small GTP bi... 143 7e-37 (Q504M8) RecName: Full=Ras-related protein Rab-26; &AB232621_1(... 144 9e-37 GN105993_1(GN105993|pid:none) Sequence 10774 from Patent WO20090... 139 9e-37 (Q86YS6) RecName: Full=Ras-related protein Rab-43; AltName: Full... 142 9e-37 AL161545_36(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 145 9e-37 BC071068_1(BC071068|pid:none) Xenopus laevis MGC78967 protein, m... 142 1e-36 (Q39222) RecName: Full=Ras-related protein RABA1b; AltName: Full... 140 1e-36 AB015472_10(AB015472|pid:none) Arabidopsis thaliana genomic DNA,... 139 1e-36 BC066913_1(BC066913|pid:none) Homo sapiens RAB26, member RAS onc... 143 2e-36 M19885_1(M19885|pid:none) Bovine GTP-binding protein (smg p25A) ... 147 2e-36 BT038097_1(BT038097|pid:none) Zea mays full-length cDNA clone ZM... 140 2e-36 (Q9ULW5) RecName: Full=Ras-related protein Rab-26; &AY646153_1(... 142 2e-36 (P11023) RecName: Full=Ras-related protein Rab-3A; AltName: Full... 147 2e-36 AF254795_1(AF254795|pid:none) Homo sapiens GTP-binding protein R... 147 2e-36 S01765(S01765;C39963) GTP-binding protein rab3 - rat &X06889_1(... 147 2e-36 (P25228) RecName: Full=Ras-related protein Rab-3; &AB112932_1(A... 146 2e-36 (Q01111) RecName: Full=Ras-related protein YPT3; &S23523(S23523... 137 2e-36 (Q3ZC27) RecName: Full=Ras-related protein Rab-19; &BC102961_1(... 140 2e-36 AY851657_1(AY851657|pid:none) Triticum aestivum small GTP-bindin... 142 2e-36 BC122421_1(BC122421|pid:none) Danio rerio zgc:153788, mRNA (cDNA... 144 2e-36 PDBN(3RAB)A MOL_ID: 1;MOL_ID: 1; MOLECULE: RAB3A; MOLECULE: RAB3... 147 2e-36 AY891536_1(AY891536|pid:none) Synthetic construct Homo sapiens c... 145 3e-36 BT064711_1(BT064711|pid:none) Zea mays full-length cDNA clone ZM... 139 3e-36 (Q9FK68) RecName: Full=Ras-related protein RABA1c; &AB012245_16... 137 3e-36 EU117168_1(EU117168|pid:none) Danio rerio Rab8 mRNA, partial cds. 135 3e-36 AK060095_1(AK060095|pid:none) Oryza sativa Japonica Group cDNA c... 139 3e-36 (O95716) RecName: Full=Ras-related protein Rab-3D; &AF081353_1(... 144 3e-36 AJ245570_1(AJ245570|pid:none) Lycopersicon esculentum mRNA for R... 136 3e-36 BT039216_1(BT039216|pid:none) Zea mays full-length cDNA clone ZM... 138 3e-36 AY084274_1(AY084274|pid:none) Arabidopsis thaliana clone 102017 ... 137 3e-36 EF144948_1(EF144948|pid:none) Populus trichocarpa clone WS0111_B... 137 3e-36 EF084887_1(EF084887|pid:none) Picea sitchensis clone WS0292_K24 ... 141 3e-36 JC5066(JC5066) GTP-binding protein rab 3C - rat &U54807_1(U5480... 145 4e-36 AM432734_2(AM432734|pid:none) Vitis vinifera contig VV78X219500.... 136 4e-36 (Q15771) RecName: Full=Ras-related protein Rab-30; &(Q17QB7) Re... 140 5e-36 CR932703_1(CR932703|pid:none) Paramecium tetraurelia, Small GTPa... 135 5e-36 AC011742_1(AC011742|pid:none) Homo sapiens BAC clone RP11-214J9 ... 155 5e-36 (Q40191) RecName: Full=Ras-related protein Rab11A; &Z73949_1(Z7... 144 6e-36 BC135626_1(BC135626|pid:none) Xenopus tropicalis RAB3A, member R... 145 6e-36 EU626442_7(EU626442|pid:none) Gossypium raimondii clone BAC 031J... 137 6e-36 AY632359_2(AY632359|pid:none) Gossypium hirsutum BAC 155C17, com... 137 6e-36 (Q40723) RecName: Full=Ras-related protein RGP2; AltName: Full=G... 138 6e-36 AF083256_1(AF083256|pid:none) Sporobolus stapfianus small GTP bi... 140 6e-36 AM269968_23(AM269968|pid:none) Aspergillus niger contig An01c021... 138 6e-36 AY809861_1(AY809861|pid:none) Schistosoma japonicum SJCHGC02927 ... 148 6e-36 AP008215_340(AP008215|pid:none) Oryza sativa (japonica cultivar-... 137 8e-36 (Q9CZT8) RecName: Full=Ras-related protein Rab-3B; &AB232588_1(... 144 8e-36 EU626443_5(EU626443|pid:none) Gossypioides kirkii clone BAC 096G... 137 8e-36 BT036850_1(BT036850|pid:none) Zea mays full-length cDNA clone ZM... 137 8e-36 GN106065_1(GN106065|pid:none) Sequence 10846 from Patent WO20090... 137 8e-36 BT069763_1(BT069763|pid:none) Zea mays full-length cDNA clone ZM... 137 8e-36 AK071461_1(AK071461|pid:none) Oryza sativa Japonica Group cDNA c... 137 8e-36 EU965206_1(EU965206|pid:none) Zea mays clone 284484 ras-related ... 137 8e-36 EF086736_1(EF086736|pid:none) Picea sitchensis clone WS02731_C01... 137 8e-36 EU162609_23(EU162609|pid:none) Cleome spinosa clone contig83 BAC... 135 8e-36 BT033192_1(BT033192|pid:none) Zea mays full-length cDNA clone ZM... 135 8e-36 EU952347_1(EU952347|pid:none) Zea mays clone 1278162 ras-related... 135 8e-36 FN357326_31(FN357326|pid:none) Schistosoma mansoni genome sequen... 150 8e-36 (Q63941) RecName: Full=Ras-related protein Rab-3B; &Y14019_1(Y1... 144 1e-35 GN080103_1(GN080103|pid:none) Sequence 706 from Patent WO2009027... 138 1e-35 GN106085_1(GN106085|pid:none) Sequence 10866 from Patent WO20090... 137 1e-35 (Q28IZ3) RecName: Full=Ras-related protein Rab-19; &CR760145_1(... 140 1e-35 AL670003_2(AL670003|pid:none) Neurospora crassa DNA linkage grou... 137 1e-35 AM920437_2206(AM920437|pid:none) Penicillium chrysogenum Wiscons... 137 1e-35 BC074609_1(BC074609|pid:none) Xenopus tropicalis RAB30, member R... 139 1e-35 CR933428_1(CR933428|pid:none) Paramecium tetraurelia, Small GTPa... 134 1e-35 CR932644_1(CR932644|pid:none) Paramecium tetraurelia, Small GTPa... 134 1e-35 EU958646_1(EU958646|pid:none) Zea mays clone 1707478 ras-related... 136 1e-35 AY690483_1(AY690483|pid:none) Triticum aestivum rab GTP-binding ... 136 1e-35 BT037150_1(BT037150|pid:none) Zea mays full-length cDNA clone ZM... 135 1e-35 AK071303_1(AK071303|pid:none) Oryza sativa Japonica Group cDNA c... 135 1e-35 DQ414558_1(DQ414558|pid:none) Suberites domuncula Rab2 gene, com... 139 1e-35 AE014298_1596(AE014298|pid:none) Drosophila melanogaster chromos... 135 1e-35 AF169950_1(AF169950|pid:none) Tetrahymena thermophila putative i... 138 1e-35 EZ000003_1(EZ000003|pid:none) TSA: Schistosoma japonicum SJCHGC0... 143 2e-35 (Q96E17) RecName: Full=Ras-related protein Rab-3C; &AY026936_1(... 143 2e-35 (Q96AX2) RecName: Full=Ras-related protein Rab-37; &AK098068_1(... 142 2e-35 AY223137_1(AY223137|pid:none) Schistosoma japonicum clone ZZD146... 143 2e-35 BT035344_1(BT035344|pid:none) Zea mays full-length cDNA clone ZM... 136 2e-35 (Q39434) RecName: Full=Ras-related protein Rab2BV; &T14566(T145... 134 2e-35 BT037824_1(BT037824|pid:none) Zea mays full-length cDNA clone ZM... 139 2e-35 U28944_14(U28944|pid:none) Caenorhabditis elegans cosmid C18A3, ... 142 2e-35 AK313538_1(AK313538|pid:none) Homo sapiens cDNA, FLJ94098, highl... 144 2e-35 U00986_1(U00986|pid:none) Aplysia californica Rab3 mRNA, complet... 142 2e-35 (Q94986) RecName: Full=Ras-related protein Rab-3; &AB112928_1(A... 142 2e-35 AY815497_1(AY815497|pid:none) Schistosoma japonicum SJCHGC05511 ... 142 2e-35 BT076392_1(BT076392|pid:none) Caligus rogercresseyi clone crog-e... 138 2e-35 BT077989_1(BT077989|pid:none) Lepeophtheirus salmonis Pacific fo... 138 2e-35 CR933476_1(CR933476|pid:none) Paramecium tetraurelia, Small GTPa... 135 2e-35 CR932579_1(CR932579|pid:none) Paramecium tetraurelia, Small GTPa... 136 3e-35 AC130603_13(AC130603|pid:none) Oryza sativa (japonica cultivar-g... 135 3e-35 AF468652_1(AF468652|pid:none) Homo sapiens RAB2B mRNA, complete ... 138 3e-35 (Q05975) RecName: Full=Ras-related protein Rab-2; &S38341(S3834... 138 3e-35 EF710656_1(EF710656|pid:none) Glyptapanteles indiensis clone BAC... 138 3e-35 AJ308736_1(AJ308736|pid:none) Plasmodium falciparum mRNA for put... 136 3e-35 DQ019037_1(DQ019037|pid:none) Trichomonas vaginalis strain G3 sm... 141 3e-35 EF457937_1(EF457937|pid:none) Lolium temulentum GTP-binding prot... 138 3e-35 BX647601_1(BX647601|pid:none) Homo sapiens mRNA; cDNA DKFZp313C1... 138 3e-35 CR932657_1(CR932657|pid:none) Paramecium tetraurelia, Small GTPa... 131 3e-35 U68256_1(U68256|pid:none) Caenorhabditis elegans rab8-like mRNA,... 131 3e-35 FN357465_14(FN357465|pid:none) Schistosoma mansoni genome sequen... 142 4e-35 AC012679_5(AC012679|pid:none) Arabidopsis thaliana chromosome 1 ... 140 4e-35 BX510928_2(BX510928|pid:none) Zebrafish DNA sequence from clone ... 142 4e-35 AC155344_30(AC155344|pid:none) Brassica rapa subsp. pekinensis c... 138 4e-35 AF532625_1(AF532625|pid:none) Glycine max GTP-binding protein mR... 135 4e-35 BC108532_1(BC108532|pid:none) Xenopus laevis hypothetical protei... 138 4e-35 AE013599_198(AE013599|pid:none) Drosophila melanogaster chromoso... 137 4e-35 AB035352_1(AB035352|pid:none) Drosophila melanogaster mRNA for D... 137 4e-35 U37099_1(U37099|pid:none) Rattus norvegicus small GTP-binding pr... 142 4e-35 AX885835_1(AX885835|pid:none) Sequence 1698 from Patent EP1033401. 131 4e-35 EF085830_1(EF085830|pid:none) Picea sitchensis clone WS0286_P20 ... 139 5e-35 AF532626_1(AF532626|pid:none) Glycine max small GTP-binding prot... 132 5e-35 (P35294) RecName: Full=Ras-related protein Rab-19; &AB232613_1(... 137 5e-35 GN106045_1(GN106045|pid:none) Sequence 10826 from Patent WO20090... 134 5e-35 CR932553_1(CR932553|pid:none) Paramecium tetraurelia, Small GTPa... 139 5e-35 (Q53B90) RecName: Full=Ras-related protein Rab-43; &AY593256_1(... 137 5e-35 U02926_1(U02926|pid:none) Dictyostelium discoideum Ax3 Rab2 mRNA... 147 5e-35 U18771_1(U18771|pid:none) Rattus norvegicus Rab26 mRNA, complete... 147 5e-35 BC054719_1(BC054719|pid:none) Mus musculus RAB2B, member RAS onc... 137 6e-35 CR548612_89(CR548612|pid:none) Paramecium tetraurelia macronucle... 138 6e-35 EF083999_1(EF083999|pid:none) Picea sitchensis clone WS0281_E05 ... 142 6e-35 BC075980_1(BC075980|pid:none) Danio rerio RAB3A, member RAS onco... 142 6e-35 (P20337) RecName: Full=Ras-related protein Rab-3B; &AF498932_1(... 141 6e-35 BC107443_1(BC107443|pid:none) Rattus norvegicus RAB2B, member RA... 137 6e-35 (P59279) RecName: Full=Ras-related protein Rab-2B; &AB232586_1(... 137 6e-35 AC093018_9(AC093018|pid:none) Oryza sativa chromosome 3 BAC OSJN... 132 6e-35 (P61019) RecName: Full=Ras-related protein Rab-2A; &(P61105) Re... 137 6e-35 (Q90965) RecName: Full=Ras-related protein Rab-2A; &S52325(S523... 137 6e-35 BT043649_1(BT043649|pid:none) Salmo salar clone HM5_0924 RAB2A, ... 137 6e-35
>(P34140) RecName: Full=Ras-related protein Rab-1B; Length = 206
Score = 339 bits (870), Expect(3) = e-101 Identities = 169/169 (100%), Positives = 169/169 (100%) Frame = +3
Query: 993 ISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFN 1172 ISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFN Sbjct: 38 ISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFN 97
Query: 1173 NVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSAN 1352 NVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSAN Sbjct: 98 NVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSAN 157
Query: 1353 VEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKCSII 1499 VEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKCSII Sbjct: 158 VEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKCSII 206
Score = 48.1 bits (113), Expect(3) = e-101 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = +1
Query: 886 PEYDYLFKLLLIGDSGVGKSC 948 PEYDYLFKLLLIGDSGVGKSC Sbjct: 3 PEYDYLFKLLLIGDSGVGKSC 23
Score = 29.3 bits (64), Expect(3) = e-101 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = +2
Query: 956 LRFADDTYTESY 991 LRFADDTYTESY Sbjct: 26 LRFADDTYTESY 37
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 2,307,372,416 Number of extensions: 43506002 Number of successful extensions: 112839 Number of sequences better than 10.0: 4149 Number of HSP's gapped: 111198 Number of HSP's successfully gapped: 6745 Length of query: 545 Length of database: 1,051,180,864 Length adjustment: 134 Effective length of query: 411 Effective length of database: 617,481,958 Effective search space: 253785084738 Effective search space used: 253785084738 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
1 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
16 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |