Contig-U12243-1
Contig ID Contig-U12243-1
Contig update 2002.12.18
Contig sequence
>Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Contig-U12243-1Q.Seq.d
ATTCAGTCAAAAAAGAATTATTCAAATTGTGGAATAAAAAAAAAAAACAA
AAAACAACAACAATAAACACATATAATATAAATATATATATATTTAATAT
GTATAGTACATTAATATCAACAGCATACTGGGGTAGTATTATTGCAGCGA
CAGGATTAATATGTATTGCTTCAATAATATATGCATCACAAGAAAAGTTA
TTATATATTCCAGATAGAAATATTGTACTTCATCCATCACAATTTGGATT
AGAGGATAACTTTGAAGAGATATTCTTAACAACATCTGATGGTATTAAAA
TTCAAACATGGTTTTTTAGACAAGAAAATTCTAAATCTGTACCAACATTA
TTATTTTGTCATTCAAATGCTGGAAATCTTTCACATAGATTAGATAATAT
TAGACACTTATTTGAAAATGTACGTTGTAATGTATTGATTTTATCATATA
GAGGTTATGGTAAGAGTCAAGGTTCACCAACAGAGATCGGTTTAAAAAAA
GATATTGATGCATGTATGGAATATTTATTAAATGACCCAACCATTGATCC
TAATACAATCATGTGTTTTGGTAGATCTTTAGGTGGTGCCGTTGCAATCG
ATACTGCATATAGATAT----------TCTCAACACCATATAAAATATAT
ATATATAAGGTTTTCAAAATATATTAATATATTAGGGTTCGCTCACTCAC
ACCCATATTTATATAAACTTGTAGTAATAGTCCAACAACACAATAAATAA
AATAATAAAAAAATTATTAAAAAACAATTTTTTTTTTTTTTTTATCATAA
TAAAAATTAACACATAAAATAAAAAATTTATTAAAAAAAAAAAAAAGAAA
AAAAAAAATATAAAATAAAACAGATAAAATGAATCCCAGAATACGATTAT
CTTTTCAAATTACTCTTAATCGGTGATAGTGGTGTAGGTAAATCATGTTA
ATTACCTTAGATTTGCAGATGATACATATACAGAGAGTTATTATTTCAAC
AATTGGTGTTGATTTTAAAATTCGTACAATTAATTTAGATGGTAAGATCA
TTAAATTACAAATCTGGGATACTGCAGGACAAGAAAGATTCAGAACAATT
ACATCATCATATTATCGTGGTGCACATGGTATCATCGTTGTGTATGATGT
CACTGATCATGTCAGTTTCAACAATGTCAAACAATGGATGCAAGAAATTC
AAAGATATGCATGTGATAGTGTAACTCGTTTACTCGTTGGTAACAAATGT
GATCTCATTGAAAAGAAGATCGTCGATACCAGTACCGCCAGAGAATATGC
CGACTCTGTTGGTATTCCATTTTTGGAAACATCTGCCAAATCATCAGCAA
ATGTAGAACAAGCATTTATGATTATGGCTAGTGAAATTAAAAAGTTACAA
GGTGGTATTCAACCAAATAACAACTCCACTTACAATGCTCATGTTGTTAA
ACCAACTGGTTTCACTCCAATTGGTAAAAAGAAGAAATGTTCAATCATAT
AAATGTATCGTTGGTTACTCCTCCCCTTTTTTTTCAATAATCAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAAAAAACAAAAAAAAGAAAAATCAACTAA
AACATTCACTCTCTCTGGTTCACCAATCAGAAGAAAT

Gap gap included
Contig length 1627
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 22
Number of EST 26
Link to clone list U12243
List of clone(s)

est1=SSH591F,1,382
est2=SSH594F,1,382
est3=VSG637F,215,618
est4=SSJ166Z,619,1362
est5=SSM671Z,621,1070
est6=VFC510F,632,833
est7=VSE304E,632,823
est8=SLC331F,638,1067
est9=SSD146E,709,1517
est10=SSH594Z,786,1316
est11=SSL855Z,806,1538
est12=SSL623Z,829,1544
est13=SSL682Z,846,1545
est14=VFC510Z,861,1384
est15=SSM886Z,923,1629
est16=SSE547Z,973,1630
est17=SSM603Z,979,1578
est18=SSI475Z,1012,1537
est19=SSB423F,1034,1318
est20=SSB424F,1034,1201
est21=VHG241F,1104,1544
est22=VHG241Z,1104,1503
est23=SSB561Z,1132,1534
est24=SLC331Z,1145,1629
est25=SSL856Z,1178,1542
est26=SHC185Z,1213,1451
Translated Amino Acid sequence
SVKKELFKLWNKKKKQKTTTINTYNINIYIFNMYSTLISTAYWGSIIAATGLICIASIIY
ASQEKLLYIPDRNIVLHPSQFGLEDNFEEIFLTTSDGIKIQTWFFRQENSKSVPTLLFCH
SNAGNLSHRLDNIRHLFENVRCNVLILSYRGYGKSQGSPTEIGLKKDIDACMEYLLNDPT
IDPNTIMCFGRSLGGAVAIDTAYRY---

---SQHHIKYIYIRFSKYINILGFAHSHPYLYKLVVIVQQHNK*nnkkiikkqfffffyh
nkn*hik*kiy*kkkkekkkykikqik*ipeydylfkllligdsgvgksc*lp*icr*yi
yrellfqqlvlilkfvqli*mvrslnyksgilqdkkdseqlhhhiivvhmvsslcmmsli
msvstmsnngckkfkdmhviv*lvyslvtnvislkrrssipvppenmptllvfhfwkhlp
nhqqm*nkhl*lwlvklksykvvfnqittpltmlmllnqlvslqlvkrrnvqsykcivgy
sspffsiikkkkkkkkkeknkkkknqlkhslslvhqsee


Translated Amino Acid sequence (All Frames)
Frame A:
iqskknysncgikkknkkqqq*thii*iyiylicivh*yqqhtgvvllqrqd*yvllq*y
mhhkksyyifqieilyfihhnld*ritlkrys*qhlmvlkfkhgfldkkilnlyqhyyfv
iqmleifhid*iildtylkmyvvmy*fyhievmvrvkvhqqrsv*kkilmhvwniy*mtq
pliliqscvlvdl*vvplqsilhid---

---SQHHIKYIYIRFSKYINILGFAHSHPYLYKLVVIVQQHNK*nnkkiikkqfffffyh
nkn*hik*kiy*kkkkekkkykikqik*ipeydylfkllligdsgvgksc*lp*icr*yi
yrellfqqlvlilkfvqli*mvrslnyksgilqdkkdseqlhhhiivvhmvsslcmmsli
msvstmsnngckkfkdmhviv*lvyslvtnvislkrrssipvppenmptllvfhfwkhlp
nhqqm*nkhl*lwlvklksykvvfnqittpltmlmllnqlvslqlvkrrnvqsykcivgy
sspffsiikkkkkkkkkeknkkkknqlkhslslvhqsee

Frame B:
fsqkriiqive*kkktknnnnkhi*ykyiyi*yv*yininsilg*yycsdrinmycfnni
citrkviiysr*kyctssitiwirg*l*rdilnni*wy*nsnmvf*trkf*ictniiils
fkcwksft*ir*y*tli*kctl*cidfii*rlw*esrftnrdrfkkry*cmygifik*pn
h*s*ynhvfw*ifrwcrcnryci*i---

---lnti*niyi*gfqniliy*gslththiyinl***snntinkiikkllknnfffffii
ikint*nkkfikkkkkkkknik*nr*nesqntiifsnys*svivv*vnhvnylrfaddty
tesyyfnnwc*f*nsyn*frw*dh*itnlgycrtrkiqnnyiiilswctwyhrcv*ch*s
cqfqqcqtmdarnskicm**cnsftrw*qm*sh*kedrryqyrqricrlcwysifgnicq
iiskcrtsiydyg**n*kvtrwystk*qlhlqcscc*tnwfhsnw*keemfnhinvslvt
pplffq*skkkkkkkkkkktkkrkin*nihslwftnqkk

Frame C:
SVKKELFKLWNKKKKQKTTTINTYNINIYIFNMYSTLISTAYWGSIIAATGLICIASIIY
ASQEKLLYIPDRNIVLHPSQFGLEDNFEEIFLTTSDGIKIQTWFFRQENSKSVPTLLFCH
SNAGNLSHRLDNIRHLFENVRCNVLILSYRGYGKSQGSPTEIGLKKDIDACMEYLLNDPT
IDPNTIMCFGRSLGGAVAIDTAYRY---

---stpykiyiykvfkiy*yirvrsltpifi*tcsnspttq*ik**kny*ktiffffls*
*klthkiknllkkkkrkkki*nktdkmnprirlsfqitlnr**wcr*imlitldlqmihi
qrviistigvdfkirtinldgkiiklqiwdtagqerfrtitssyyrgahgiivvydvtdh
vsfnnvkqwmqeiqryacdsvtrllvgnkcdliekkivdtstareyadsvgipfletsak
ssanveqafmimaseikklqggiqpnnnstynahvvkptgftpigkkkkcsii*myrwll
lpfffnnqkkkkkkkkrkkqkkekstktftlsgspirrn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12243-1 (Contig-U12243-1Q)
/CSM_Contig/Contig-U12243-1Q.Seq.d
(1637 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Conti... 1283 0.0
Contig-U14029-1 (Contig-U14029-1Q) /CSM_Contig/Conti... 236 6e-62
Contig-U10248-1 (Contig-U10248-1Q) /CSM_Contig/Conti... 88 4e-17
Contig-U12705-1 (Contig-U12705-1Q) /CSM_Contig/Conti... 72 2e-12
Contig-U14031-1 (Contig-U14031-1Q) /CSM_Contig/Conti... 64 5e-10
Contig-U04090-1 (Contig-U04090-1Q) /CSM_Contig/Conti... 56 1e-07
Contig-U04940-1 (Contig-U04940-1Q) /CSM_Contig/Conti... 52 2e-06
Contig-U06546-1 (Contig-U06546-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U06696-1 (Contig-U06696-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U14591-1 (Contig-U14591-1Q) /CSM_Contig/Conti... 38 0.029

>Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Contig-U12243-1Q.Seq.d
Length = 1637

Score = 1283 bits (647), Expect = 0.0
Identities = 647/647 (100%)
Strand = Plus / Plus


Query: 880 tgaatcccagaatacgattatcttttcaaattactcttaatcggtgatagtggtgtaggt 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tgaatcccagaatacgattatcttttcaaattactcttaatcggtgatagtggtgtaggt 939


Query: 940 aaatcatgttaattaccttagatttgcagatgatacatatacagagagttattatttcaa 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 aaatcatgttaattaccttagatttgcagatgatacatatacagagagttattatttcaa 999


Query: 1000 caattggtgttgattttaaaattcgtacaattaatttagatggtaagatcattaaattac 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 caattggtgttgattttaaaattcgtacaattaatttagatggtaagatcattaaattac 1059


Query: 1060 aaatctgggatactgcaggacaagaaagattcagaacaattacatcatcatattatcgtg 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 aaatctgggatactgcaggacaagaaagattcagaacaattacatcatcatattatcgtg 1119


Query: 1120 gtgcacatggtatcatcgttgtgtatgatgtcactgatcatgtcagtttcaacaatgtca 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 gtgcacatggtatcatcgttgtgtatgatgtcactgatcatgtcagtttcaacaatgtca 1179


Query: 1180 aacaatggatgcaagaaattcaaagatatgcatgtgatagtgtaactcgtttactcgttg 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 aacaatggatgcaagaaattcaaagatatgcatgtgatagtgtaactcgtttactcgttg 1239


Query: 1240 gtaacaaatgtgatctcattgaaaagaagatcgtcgataccagtaccgccagagaatatg 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 gtaacaaatgtgatctcattgaaaagaagatcgtcgataccagtaccgccagagaatatg 1299


Query: 1300 ccgactctgttggtattccatttttggaaacatctgccaaatcatcagcaaatgtagaac 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 ccgactctgttggtattccatttttggaaacatctgccaaatcatcagcaaatgtagaac 1359


Query: 1360 aagcatttatgattatggctagtgaaattaaaaagttacaaggtggtattcaaccaaata 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 aagcatttatgattatggctagtgaaattaaaaagttacaaggtggtattcaaccaaata 1419


Query: 1420 acaactccacttacaatgctcatgttgttaaaccaactggtttcactccaattggtaaaa 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 acaactccacttacaatgctcatgttgttaaaccaactggtttcactccaattggtaaaa 1479


Query: 1480 agaagaaatgttcaatcatataaatgtatcgttggttactcctcccc 1526
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 agaagaaatgttcaatcatataaatgtatcgttggttactcctcccc 1526


Score = 973 bits (491), Expect = 0.0
Identities = 505/512 (98%)
Strand = Plus / Plus


Query: 106 gtacattaatatcaacagcatactggggtagtattattgcagcgacaggattaatatgta 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gtacattaatatcaacagcatactggggtagtattattgcagcgacaggattaatatgta 165


Query: 166 ttgcttcaataatatatgcatcacaagaaaagttattatatattccagatagaaatattg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ttgcttcaataatatatgcatcacaagaaaagttattatatattccagatagaaatattg 225


Query: 226 tacttcatccatcacaatttggattagaggataactttgaagagatattcttaacaacat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tacttcatccatcacaatttggattagaggataactttgaagagatattcttaacaacat 285


Query: 286 ctgatggtattaaaattcaaacatggttttttagacaagaaaattctaaatctgtaccaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctgatggtattaaaattcaaacatggttttttagacaagaaaattctaaatctgtaccaa 345


Query: 346 cattattattttgtcattcaaatgctggaaatctttcacatagattagataatattagac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cattattattttgtcattcaaatgctggaaatctttcacatagattagataatattagac 405


Query: 406 acttatttgaaaatgtacgttgtaatgtattgattttatcatatagaggttatggtaaga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 acttatttgaaaatgtacgttgtaatgtattgattttatcatatagaggttatggtaaga 465


Query: 466 gtcaaggttcaccaacagagatcggtttnnnnnnngatattgatgcatgtatggaatatt 525
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 466 gtcaaggttcaccaacagagatcggtttaaaaaaagatattgatgcatgtatggaatatt 525


Query: 526 tattaaatgacccaaccattgatcctaatacaatcatgtgttttggtagatctttaggtg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tattaaatgacccaaccattgatcctaatacaatcatgtgttttggtagatctttaggtg 585


Query: 586 gtgccgttgcaatcgatactgcatatagatat 617
||||||||||||||||||||||||||||||||
Sbjct: 586 gtgccgttgcaatcgatactgcatatagatat 617


Score = 188 bits (95), Expect = 1e-47
Identities = 95/95 (100%)
Strand = Plus / Plus


Query: 683 tagggttcgctcactcacacccatatttatataaacttgtagtaatagtccaacaacaca 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tagggttcgctcactcacacccatatttatataaacttgtagtaatagtccaacaacaca 742


Query: 743 ataaataaaataataaaaaaattattaaaaaacaa 777
|||||||||||||||||||||||||||||||||||
Sbjct: 743 ataaataaaataataaaaaaattattaaaaaacaa 777


Score = 89.7 bits (45), Expect = 9e-18
Identities = 45/45 (100%)
Strand = Plus / Plus


Query: 1593 tcaactaaaacattcactctctctggttcaccaatcagaagaaat 1637
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1593 tcaactaaaacattcactctctctggttcaccaatcagaagaaat 1637


Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 794 atcataataaaaattaacacataaaataaaaaatttatt 832
|||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atcataataaaaattaacacataaaataaaaaatttatt 832


Score = 69.9 bits (35), Expect = 8e-12
Identities = 35/35 (100%)
Strand = Plus / Plus


Query: 1 attcagtcaaaaaagaattattcaaattgtggaat 35
|||||||||||||||||||||||||||||||||||
Sbjct: 1 attcagtcaaaaaagaattattcaaattgtggaat 35


Score = 34.2 bits (17), Expect = 0.46
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 754 aataaaaaaattattaaaaaa 774
||||||||| |||||||||||
Sbjct: 818 aataaaaaatttattaaaaaa 838


Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 55 caacaacaataaacac 70
||||||||||||||||
Sbjct: 55 caacaacaataaacac 70


>Contig-U14029-1 (Contig-U14029-1Q) /CSM_Contig/Contig-U14029-1Q.Seq.d
Length = 895

Score = 236 bits (119), Expect = 6e-62
Identities = 220/251 (87%), Gaps = 2/251 (0%)
Strand = Plus / Plus


Query: 907 aaattactcttaatcggtgatagtggtgtaggtaaatcatgttaattaccttagatttgc 966
|||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 70 aaattacttttaatcggtgatagtggtgtaggtaaatcatgtcttttac-ttagatttgc 128


Query: 967 agatgatacatatacagagagttattatttcaacaattggtgttgattttaaaattcgta 1026
||||| || ||| |||| |||| | || |||||||||||||| ||||| || ||| | |
Sbjct: 129 tgatgacacttattcagaaagtt-tcatctcaacaattggtgtcgatttcaagattagaa 187


Query: 1027 caattaatttagatggtaagatcattaaattacaaatctgggatactgcaggacaagaaa 1086
| || | ||| ||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct: 188 ctatcgaattaaatggtaaaaccattaaattacaaatttgggatactgcaggacaagaaa 247


Query: 1087 gattcagaacaattacatcatcatattatcgtggtgcacatggtatcatcgttgtgtatg 1146
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 248 gatttagaacaattacatcatcatattatcgtggtgcccatggtatcattgttgtttatg 307


Query: 1147 atgtcactgat 1157
|||| ||||||
Sbjct: 308 atgtaactgat 318


Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Plus


Query: 1326 gaaacatctgccaaatcatcagcaaatgtagaacaagcatttatgattatggctagtgaa 1385
||||| ||||| ||| |||| |||| ||||||||||||||||||| ||||| | ||||
Sbjct: 487 gaaacctctgcaaaacaatcaacaaacgtagaacaagcatttatgacaatggccactgaa 546


Query: 1386 attaaaaa 1393
||||||||
Sbjct: 547 attaaaaa 554


>Contig-U10248-1 (Contig-U10248-1Q) /CSM_Contig/Contig-U10248-1Q.Seq.d
Length = 773

Score = 87.7 bits (44), Expect = 4e-17
Identities = 71/80 (88%)
Strand = Plus / Plus


Query: 1051 ttaaattacaaatctgggatactgcaggacaagaaagattcagaacaattacatcatcat 1110
|||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 205 ttaatttacaaatttgggatacagcaggacaagagagattcagaacaattacatcatctt 264


Query: 1111 attatcgtggtgcacatggt 1130
|||| | || |||||||||
Sbjct: 265 tttatagaggagcacatggt 284


Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1184 atggatgcaagaaattcaaagatatg 1209
||||||||||||||||||||||||||
Sbjct: 338 atggatgcaagaaattcaaagatatg 363


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,969
Number of Sequences: 6905
Number of extensions: 32969
Number of successful extensions: 4805
Number of sequences better than 10.0: 833
length of query: 1637
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1621
effective length of database: 5,564,391
effective search space: 9019877811
effective search space used: 9019877811
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA
Query= Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Contig-U12243-1Q.Seq.d
(1637 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C93909) Dictyostelium discoideum slug cDNA, clone SSL855. 1092 0.0 3
(C93756) Dictyostelium discoideum slug cDNA, clone SSL682. 1092 0.0 3
(C93260) Dictyostelium discoideum slug cDNA, clone SSM886. 1092 0.0 3
(C92440) Dictyostelium discoideum slug cDNA, clone SSE547. 1092 0.0 1
(C93305) Dictyostelium discoideum slug cDNA, clone SSM603. 1080 0.0 1
(C93700) Dictyostelium discoideum slug cDNA, clone SSL623. 955 0.0 3
(L21010) Dictyostelium discoideum Rab1B mRNA, 3' end of cds. 813 0.0 5
(C90430) Dictyostelium discoideum slug cDNA, clone SSI475. 1019 0.0 2
(BJ430080) Dictyostelium discoideum cDNA clone:ddv6c03, 3' e... 761 0.0 3
(BJ421606) Dictyostelium discoideum cDNA clone:ddv43a12, 5' ... 854 0.0 1
(AU034253) Dictyostelium discoideum slug cDNA, clone SLC331. 773 0.0 2
(AU038347) Dictyostelium discoideum slug cDNA, clone SSH594. 660 0.0 4
(BJ440294) Dictyostelium discoideum cDNA clone:ddv43a12, 3' ... 793 0.0 1
(AU037170) Dictyostelium discoideum slug cDNA, clone SSB561. 765 0.0 1
(AU266681) Dictyostelium discoideum vegetative cDNA clone:VS... 553 0.0 2
(C90802) Dictyostelium discoideum slug cDNA, clone SSJ166. 170 e-173 8
(AU071405) Dictyostelium discoideum slug cDNA, clone SSB423. 476 e-129 1
(C93361) Dictyostelium discoideum slug cDNA, clone SSM671. 172 e-113 5
(AU060942) Dictyostelium discoideum slug cDNA, clone SLC331. 167 3e-91 5
(AU071406) Dictyostelium discoideum slug cDNA, clone SSB424. 333 1e-86 1
(AU073582) Dictyostelium discoideum slug cDNA, clone SSH594. 268 4e-80 2
(AU073581) Dictyostelium discoideum slug cDNA, clone SSH591. 268 4e-80 2
(BJ331981) Dictyostelium discoideum cDNA clone:dda37f20, 5' ... 172 4e-67 5
(L21009) Dictyostelium discoideum Rab1A mRNA, complete cds. 172 2e-63 5
(AU061016) Dictyostelium discoideum slug cDNA, clone SLC626. 172 1e-62 5
(AU270410) Dictyostelium discoideum vegetative cDNA clone:VS... 172 1e-59 4
(C89695) Dictyostelium discoideum slug cDNA, clone SSA695. 125 4e-48 5
(AL440480) T3 end of clone BD0AA012F12 of library BD0AA from... 107 3e-39 4
(ES599203) BPE00000760 Buddenbrockia plumatellae SMART cDNA ... 78 9e-38 5
(EH011974) USDA-FP_184920 Lysiphlebus testaceipes adult whol... 66 5e-37 6
(EB485357) 1099288469394 12-DrosW-norm-1P5Kb Drosophila will... 66 1e-36 5
(EB454766) 1099341333909 12-DrosW-std-1P6Kb Drosophila willi... 66 1e-36 5
(EB456325) 1099341391033 12-DrosW-std-1P6Kb Drosophila willi... 66 2e-35 5
(EB458024) 1099341542629 12-DrosW-std-1P6Kb Drosophila willi... 66 2e-35 5
(EB494285) 1099435179131 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5
(EB497961) 1099435218645 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5
(EB454712) 1099341320890 12-DrosW-std-1P6Kb Drosophila willi... 66 2e-35 5
(EB485313) 1099288469171 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5
(EB502510) 1099476361079 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5
(EB487449) 1099341206040 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-35 5
(BJ347346) Dictyostelium discoideum cDNA clone:dda26h20, 3' ... 100 3e-33 3
(EG017620) EST02254_0906 Sporophyte cDNA Library Porphyra ha... 76 3e-33 6
(BJ328400) Dictyostelium discoideum cDNA clone:dda28e03, 5' ... 100 4e-33 3
(BJ412726) Dictyostelium discoideum cDNA clone:ddv9j18, 5' e... 100 4e-33 3
(BJ415110) Dictyostelium discoideum cDNA clone:ddv21o12, 5' ... 100 4e-33 3
(BJ327500) Dictyostelium discoideum cDNA clone:dda20m14, 5' ... 100 4e-33 3
(M34457) Dictyostelium discoideum GTP-binding protein SAS1 g... 100 1e-32 3
(EA200507) Sequence 64822 from patent US 7214786. 135 2e-32 2
(C92753) Dictyostelium discoideum slug cDNA, clone SSF195. 88 3e-32 4
(C89790) Dictyostelium discoideum slug cDNA, clone SSG849. 88 3e-32 4
(DN312681) PL06013B1D07 cDNA from juvenile hermaphodites Sch... 129 6e-32 3
(EG348194) SAAH-aac84f09.g1 Agen 0058 Schmidtea mediterranea... 129 7e-32 3
(EG351240) SAAH-aad16g09.g1 Agen 0058 Schmidtea mediterranea... 129 7e-32 3
(EG413517) SAAH-aab11d02.b1 Agen 0058 Schmidtea mediterranea... 129 7e-32 3
(EC824262) SME00007547 esmbsro2 Sawyeria marylandensis cDNA,... 127 7e-32 2
(EC821471) SME00006372 esmbsro2 Sawyeria marylandensis cDNA,... 127 7e-32 2
(EC819807) SME00002670 esmbsro2 Sawyeria marylandensis cDNA,... 127 7e-32 2
(EE672460) SAAH-aab74f01.g1 Agen 0058 Schmidtea mediterranea... 129 8e-32 3
(EE666041) SAAH-aab55g07.g1 Agen 0058 Schmidtea mediterranea... 129 8e-32 3
(EC617428) SAAH-aaa40d06.g1 Agen 0058 Schmidtea mediterranea... 129 9e-32 3
(EG350396) SAAH-aad11e09.g1 Agen 0058 Schmidtea mediterranea... 129 9e-32 3
(DN314465) PL06018A2F09 cDNA from juvenile hermaphodites Sch... 129 9e-32 3
(DN308618) PL05017A1F04 cDNA from sexually mature hermaphodi... 129 9e-32 3
(DN313077) PL06014B1F11 cDNA from juvenile hermaphodites Sch... 129 1e-31 3
(EC615581) SAAH-aaa66h03.g1 Agen 0058 Schmidtea mediterranea... 129 1e-31 3
(EE671325) SAAH-aac56f11.g1 Agen 0058 Schmidtea mediterranea... 129 1e-31 3
(DN302017) PL04024A2H01 cDNA from sexually mature hermaphodi... 129 1e-31 3
(BJ434188) Dictyostelium discoideum cDNA clone:ddv16l01, 3' ... 94 2e-31 3
(EB497386) 1099435212776 12-DrosW-norm-1P5Kb Drosophila will... 66 2e-31 5
(BJ343136) Dictyostelium discoideum cDNA clone:dda22k04, 3' ... 100 3e-31 2
(EG347207) SAAH-aaa75a09.g1 Agen 0058 Schmidtea mediterranea... 129 3e-31 2
(EE281430) SAAH-aaa93a01.g1 Agen 0058 Schmidtea mediterranea... 129 3e-31 2
(BJ414563) Dictyostelium discoideum cDNA clone:ddv19j13, 5' ... 100 3e-31 2
(EC618058) SAAH-aaa63g09.g1 Agen 0058 Schmidtea mediterranea... 129 1e-30 3
(EE282655) SAAH-aab11d02.g1 Agen 0058 Schmidtea mediterranea... 129 4e-30 3
(BJ397989) Dictyostelium discoideum cDNA clone:dds10d18, 3' ... 88 6e-30 3
(AU037978) Dictyostelium discoideum slug cDNA, clone SSH118. 84 2e-28 4
(CN635937) 124F08_546145 Douglas-fir cDNA library PmIFG_73-6... 76 2e-28 3
(BJ429793) Dictyostelium discoideum cDNA clone:ddv4l19, 3' e... 101 2e-28 2
(FE264999) CAZO4201.rev CAZO Naegleria gruberi Flagellate St... 82 8e-28 4
(CA756042) BR030033000_PLATE_H01_8_014.ab1 OA Oryza sativa J... 62 9e-28 5
(FE265000) CAZO4201.fwd CAZO Naegleria gruberi Flagellate St... 82 9e-28 4
(DN297967) PL04011A1H10 cDNA from sexually mature hermaphodi... 100 3e-27 3
(C91481) Dictyostelium discoideum slug cDNA, clone SSK334. 100 3e-27 3
(FE258317) CAPH7080.fwd CAPH Naegleria gruberi amoeba stage ... 82 3e-27 4
(FE258316) CAPH7080.rev CAPH Naegleria gruberi amoeba stage ... 82 3e-27 4
(C94280) Dictyostelium discoideum slug cDNA, clone SSK733. 86 3e-27 5
(C84703) Dictyostelium discoideum slug cDNA, clone SSE658. 86 4e-27 5
(BJ359917) Dictyostelium discoideum cDNA clone:ddc3a07, 5' e... 94 4e-27 2
(EB501567) 1099435333319 12-DrosW-norm-1P5Kb Drosophila will... 66 5e-27 4
(AU060975) Dictyostelium discoideum slug cDNA, clone SLC452. 135 6e-27 1
(AU034548) Dictyostelium discoideum slug cDNA, clone SLC452. 135 6e-27 1
(AU033924) Dictyostelium discoideum slug cDNA, clone SLB620. 135 6e-27 1
(EG416999) SAAH-aab55g07.b1 Agen 0058 Schmidtea mediterranea... 129 6e-27 2
(AB015237) Dictyostelium discoideum Rab1C mRNA, complete cds. 86 7e-27 5
(EG016891) EST00157_0906 Sporophyte cDNA Library Porphyra ha... 68 8e-27 5
(FE249049) CAPH2054.fwd CAPH Naegleria gruberi amoeba stage ... 82 1e-26 4
(M38393) Discopyge ommata GTP-binding protein (o-rab1) mRNA,... 66 1e-26 6
(AU051903) Dictyostelium discoideum slug cDNA, clone SSC355. 74 2e-26 5
(EG409726) SAAH-aaa40d06.b1 Agen 0058 Schmidtea mediterranea... 127 3e-26 2

>(C93909) Dictyostelium discoideum slug cDNA, clone SSL855.
Length = 730

Score = 1092 bits (551), Expect(3) = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus


Query: 992 tatttcaacaattggtgttgattttaaaattcgtacaattaatttagatggtaagatcat 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tatttcaacaattggtgttgattttaaaattcgtacaattaatttagatggtaagatcat 235


Query: 1052 taaattacaaatctgggatactgcaggacaagaaagattcagaacaattacatcatcata 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 taaattacaaatctgggatactgcaggacaagaaagattcagaacaattacatcatcata 295


Query: 1112 ttatcgtggtgcacatggtatcatcgttgtgtatgatgtcactgatcatgtcagtttcaa 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttatcgtggtgcacatggtatcatcgttgtgtatgatgtcactgatcatgtcagtttcaa 355


Query: 1172 caatgtcaaacaatggatgcaagaaattcaaagatatgcatgtgatagtgtaactcgttt 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 caatgtcaaacaatggatgcaagaaattcaaagatatgcatgtgatagtgtaactcgttt 415


Query: 1232 actcgttggtaacaaatgtgatctcattgaaaagaagatcgtcgataccagtaccgccag 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 actcgttggtaacaaatgtgatctcattgaaaagaagatcgtcgataccagtaccgccag 475


Query: 1292 agaatatgccgactctgttggtattccatttttggaaacatctgccaaatcatcagcaaa 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agaatatgccgactctgttggtattccatttttggaaacatctgccaaatcatcagcaaa 535


Query: 1352 tgtagaacaagcatttatgattatggctagtgaaattaaaaagttacaaggtggtattca 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgtagaacaagcatttatgattatggctagtgaaattaaaaagttacaaggtggtattca 595


Query: 1412 accaaataacaactccacttacaatgctcatgttgttaaaccaactggtttcactccaat 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 accaaataacaactccacttacaatgctcatgttgttaaaccaactggtttcactccaat 655


Query: 1472 tggtaaaaagaagaaatgttcaatcatataaatgtatcgttggttactcctccccttttt 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tggtaaaaagaagaaatgttcaatcatataaatgtatcgttggttactcctccccttttt 715


Query: 1532 tttcaataatc 1542
|||||||||||
Sbjct: 716 tttcaataatc 726

Score = 123 bits (62), Expect(3) = 0.0
Identities = 68/70 (97%)
Strand = Plus / Plus


Query: 886 ccagaatacgattatcttttcaaattactcttaatcggtgatagtggtgtaggtaaatca 945
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 72 ccagaatacgattatcttttcaaattacttttaatcggtgatagtggtgtaggtaaatca 131


Query: 946 tgttaattac 955
|||| |||||
Sbjct: 132 tgtttattac 141

Score = 71.9 bits (36), Expect(3) = 0.0
Identities = 36/36 (100%)
Strand = Plus / Plus


Query: 956 cttagatttgcagatgatacatatacagagagttat 991
||||||||||||||||||||||||||||||||||||
Sbjct: 141 cttagatttgcagatgatacatatacagagagttat 176

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,660,600,822
Number of extensions: 97674440
Number of successful extensions: 7704073
Number of sequences better than 10.0: 8659
Length of query: 1637
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1613
Effective length of database: 97,308,875,965
Effective search space: 156959216931545
Effective search space used: 156959216931545
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Contig-U12243-1Q.Seq.d
(1637 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P34140) RecName: Full=Ras-related protein Rab-1B; 339 e-101
L21010_1(L21010|pid:none) Dictyostelium discoideum Rab1B mRNA, 3... 330 5e-96
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342... 229 2e-68
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related... 228 3e-68
AF101310_4(AF101310|pid:none) Caenorhabditis elegans cosmid C39F... 227 6e-68
(P22125) RecName: Full=Ras-related protein ORAB-1; &M38393_1(M3... 227 6e-68
BC045014_1(BC045014|pid:none) Xenopus laevis RAB1, member RAS on... 226 8e-68
DQ214474_1(DQ214474|pid:none) Taeniopygia guttata clone 0063P003... 225 2e-67
(P62820) RecName: Full=Ras-related protein Rab-1A; AltName: Full... 225 2e-67
AL606522_3(AL606522|pid:none) Mouse DNA sequence from clone RP23... 225 2e-67
(Q52NJ2) RecName: Full=Ras-related protein Rab-1A; &AY996813_1(... 225 2e-67
J02998_1(J02998|pid:none) Rat ras-related protein mRNA, clone NT... 224 3e-67
BT057068_1(BT057068|pid:none) Salmo salar clone ssal-eve-570-039... 224 3e-67
AK151085_1(AK151085|pid:none) Mus musculus bone marrow macrophag... 224 4e-67
AE014297_3082(AE014297|pid:none) Drosophila melanogaster chromos... 224 5e-67
(Q05974) RecName: Full=Ras-related protein Rab-1A; &S38339(S383... 224 6e-67
DQ214475_1(DQ214475|pid:none) Taeniopygia guttata clone 0058P004... 223 8e-67
S06147(S06147;S03189)GTP-binding protein rab1B - rat 223 8e-67
AK129477_1(AK129477|pid:none) Mus musculus mRNA for mKIAA3012 pr... 223 1e-66
D38625(D38625)GTP-binding protein o-rab1 - electric ray (Discopy... 223 1e-66
BT078127_1(BT078127|pid:none) Lepeophtheirus salmonis Pacific fo... 222 1e-66
AF013572_1(AF013572|pid:none) Bombyx mori small GTP-binding prot... 222 2e-66
BT077899_1(BT077899|pid:none) Lepeophtheirus salmonis Pacific fo... 222 3e-66
BT077861_1(BT077861|pid:none) Lepeophtheirus salmonis Pacific fo... 221 4e-66
(Q5RE13) RecName: Full=Ras-related protein Rab-1B; &(Q9H0U4) Re... 221 4e-66
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ... 222 5e-66
CR533462_1(CR533462|pid:none) Homo sapiens full open reading fra... 221 9e-66
(Q2HJH2) RecName: Full=Ras-related protein Rab-1B; &BC105393_1(... 219 9e-66
(Q9D1G1) RecName: Full=Ras-related protein Rab-1B; &AB232584_1(... 219 1e-65
(P10536) RecName: Full=Ras-related protein Rab-1B; &X13905_1(X1... 219 2e-65
BT076429_1(BT076429|pid:none) Caligus rogercresseyi clone crog-e... 219 2e-65
AK042020_1(AK042020|pid:none) Mus musculus 3 days neonate thymus... 219 2e-65
(Q39571) RecName: Full=GTP-binding protein YPTC1; &DQ222936_1(D... 215 2e-64
(P33723) RecName: Full=GTP-binding protein ypt1; &AL356324_15(A... 215 2e-64
GN106121_1(GN106121|pid:none) Sequence 10902 from Patent WO20090... 215 2e-64
(Q01890) RecName: Full=Ras-like GTP-binding protein YPT1; &JC53... 215 2e-64
DQ414556_1(DQ414556|pid:none) Suberites domuncula Rab1 gene, com... 216 3e-64
AJ278659_1(AJ278659|pid:none) Aspergillus niger srgB gene for a ... 214 3e-64
AJ277108_1(AJ277108|pid:none) Trichoderma reesei ypt1 gene for s... 214 4e-64
CP001323_241(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 214 5e-64
(P34139) RecName: Full=Ras-related protein Rab-1A; 221 5e-64
AF244545_1(AF244545|pid:none) Aspergillus awamori YptA (yptA) ge... 214 5e-64
Y08425_1(Y08425|pid:none) N.plumbaginifolia mRNA for small GTP-b... 217 8e-64
EF147099_1(EF147099|pid:none) Populus trichocarpa clone WS01227_... 222 1e-63
BT081293_1(BT081293|pid:none) Caligus clemensi clone ccle-evs-51... 212 2e-63
(P11620) RecName: Full=GTP-binding protein ypt1; &AL136536_10(A... 211 2e-63
GM977155_1(GM977155|pid:none) Sequence 63 from Patent WO20081456... 221 3e-63
EF086613_1(EF086613|pid:none) Picea sitchensis clone WS02920_I20... 217 4e-63
Z73932_1(Z73932|pid:none) L.japonicus mRNA for small GTP-binding... 216 4e-63
GM977167_1(GM977167|pid:none) Sequence 75 from Patent WO20081456... 220 4e-63
D12547_1(D12547|pid:none) Pisum sativum mRNA for GTP-binding pro... 221 5e-63
BT070553_1(BT070553|pid:none) Picea sitchensis clone WS02735_N04... 214 5e-63
BT070586_1(BT070586|pid:none) Picea sitchensis clone WS02737_M21... 214 7e-63
GN106103_1(GN106103|pid:none) Sequence 10884 from Patent WO20090... 219 8e-63
GN106077_1(GN106077|pid:none) Sequence 10858 from Patent WO20090... 214 1e-62
GN105857_1(GN105857|pid:none) Sequence 10638 from Patent WO20090... 216 2e-62
EF146669_1(EF146669|pid:none) Populus trichocarpa clone WS01211_... 212 2e-62
D12548_1(D12548|pid:none) Pisum sativum mRNA for GTP-binding pro... 213 3e-62
GN106111_1(GN106111|pid:none) Sequence 10892 from Patent WO20090... 213 3e-62
BC150404_1(BC150404|pid:none) Danio rerio zgc:171927, mRNA (cDNA... 207 4e-62
AJ810707_1(AJ810707|pid:none) Poa pratensis mRNA for RAB1-like (... 211 5e-62
BT051367_1(BT051367|pid:none) Medicago truncatula clone MTYF1_F2... 212 5e-62
EU284879_1(EU284879|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 211 5e-62
BT052509_1(BT052509|pid:none) Medicago truncatula clone MTYFD_FE... 211 7e-62
CR382130_329(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 210 7e-62
GN105981_1(GN105981|pid:none) Sequence 10762 from Patent WO20090... 216 2e-61
GN105977_1(GN105977|pid:none) Sequence 10758 from Patent WO20090... 209 2e-61
S34253(S34253) GTP-binding protein, ras-related - common tobacco... 207 2e-61
GN106061_1(GN106061|pid:none) Sequence 10842 from Patent WO20090... 214 2e-61
AC159407_36(AC159407|pid:none) Trypanosoma brucei chromosome 8 c... 211 3e-61
GM977161_1(GM977161|pid:none) Sequence 69 from Patent WO20081456... 208 3e-61
DQ372931_1(DQ372931|pid:none) Pinus pinaster Rab1 mRNA, complete... 213 3e-61
AM494964_85(AM494964|pid:none) Leishmania braziliensis chromosom... 210 3e-61
GN106117_1(GN106117|pid:none) Sequence 10898 from Patent WO20090... 209 3e-61
CP000587_71(CP000587|pid:none) Ostreococcus lucimarinus CCE9901 ... 208 3e-61
GM977163_1(GM977163|pid:none) Sequence 71 from Patent WO20081456... 215 4e-61
GN106155_1(GN106155|pid:none) Sequence 10936 from Patent WO20090... 209 4e-61
(P40392) RecName: Full=Ras-related protein RIC1; &AK243597_1(AK... 207 4e-61
GN106151_1(GN106151|pid:none) Sequence 10932 from Patent WO20090... 207 6e-61
(Q92928) RecName: Full=Putative Ras-related protein Rab-1C; ... 212 6e-61
D12549_1(D12549|pid:none) Pisum sativum mRNA for GTP-binding pro... 206 1e-60
L12031_1(L12031|pid:none) Leishmania major V121 GTP-binding prot... 209 1e-60
DQ397201_1(DQ397201|pid:none) Saccharum officinarum small GTP bi... 213 2e-60
GN080095_1(GN080095|pid:none) Sequence 698 from Patent WO2009027... 213 2e-60
EF144402_1(EF144402|pid:none) Populus trichocarpa clone PX0019_E... 206 2e-60
AE017352_188(AE017352|pid:none) Cryptococcus neoformans var. neo... 202 2e-60
GN105853_1(GN105853|pid:none) Sequence 10634 from Patent WO20090... 207 2e-60
AC183496_25(AC183496|pid:none) Brassica oleracea, *** SEQUENCING... 207 2e-60
GN080089_1(GN080089|pid:none) Sequence 692 from Patent WO2009027... 207 2e-60
GN106059_1(GN106059|pid:none) Sequence 10840 from Patent WO20090... 206 2e-60
CP000497_244(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 208 2e-60
CR382124_213(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 207 2e-60
BT034664_1(BT034664|pid:none) Zea mays full-length cDNA clone ZM... 206 2e-60
B86153(B86153) ARA-5 [imported] - Arabidopsis thaliana &U89959_... 206 3e-60
CS560194_1(CS560194|pid:none) Sequence 781 from Patent WO2006032... 206 3e-60
GN106197_1(GN106197|pid:none) Sequence 10978 from Patent WO20090... 206 3e-60
BT039522_1(BT039522|pid:none) Zea mays full-length cDNA clone ZM... 206 3e-60
EF091876_1(EF091876|pid:none) Solanum tuberosum ras-related GTP ... 203 3e-60
CS559708_1(CS559708|pid:none) Sequence 295 from Patent WO2006032... 206 3e-60
GN080135_1(GN080135|pid:none) Sequence 738 from Patent WO2009027... 212 4e-60
GM977145_1(GM977145|pid:none) Sequence 53 from Patent WO20081456... 208 4e-60
AJ307662_21(AJ307662|pid:none) Oryza sativa genomic DNA fragment... 206 4e-60
AK059888_1(AK059888|pid:none) Oryza sativa Japonica Group cDNA c... 206 4e-60
GN106165_1(GN106165|pid:none) Sequence 10946 from Patent WO20090... 204 4e-60
AY060495_1(AY060495|pid:none) Arabidopsis thaliana AT4g17530/dl4... 206 4e-60
FM992688_325(FM992688|pid:none) Candida dubliniensis CD36 chromo... 206 6e-60
AF330211_1(AF330211|pid:none) Candida albicans small GTP-binding... 206 6e-60
AC140549_18(AC140549|pid:none) Medicago truncatula clone mth2-28... 211 8e-60
AF108883_1(AF108883|pid:none) Capsicum annuum small GTP-binding ... 204 8e-60
GN105859_1(GN105859|pid:none) Sequence 10640 from Patent WO20090... 204 8e-60
EF145603_1(EF145603|pid:none) Populus trichocarpa clone WS01126_... 203 1e-59
AC104285_6(AC104285|pid:none) Oryza sativa (japonica cultivar-gr... 214 1e-59
(Q9ZRE2) RecName: Full=Ras-related protein RABD1; AltName: Full=... 209 1e-59
L48181_1(L48181|pid:none) Brassica campestris L. pekinensis ypt-... 209 2e-59
AC183493_34(AC183493|pid:none) Brassica oleracea Contig B, compl... 202 4e-59
GN106013_1(GN106013|pid:none) Sequence 10794 from Patent WO20090... 202 4e-59
GN105983_1(GN105983|pid:none) Sequence 10764 from Patent WO20090... 202 5e-59
AP007162_533(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 199 7e-59
AF324990_1(AF324990|pid:none) Arabidopsis thaliana AT5g47200 (AT... 201 9e-59
AP008208_2028(AP008208|pid:none) Oryza sativa (japonica cultivar... 206 2e-58
BT071594_1(BT071594|pid:none) Picea sitchensis clone WS02926_J12... 207 4e-58
GM977157_1(GM977157|pid:none) Sequence 65 from Patent WO20081456... 201 5e-58
GM977149_1(GM977149|pid:none) Sequence 57 from Patent WO20081456... 201 5e-58
EU069503_1(EU069503|pid:none) Gymnochlora stellata Rab1B mRNA, c... 201 9e-58
FN392321_231(FN392321|pid:none) Pichia pastoris GS115 chromosome... 199 9e-58
AY321327_1(AY321327|pid:none) Rattus norvegicus Ac2-048 mRNA, co... 226 1e-57
CU928171_789(CU928171|pid:none) Kluyveromyces thermotolerans str... 199 2e-57
AE016815_434(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 196 6e-57
X00209_2(X00209|pid:none) Yeast YP2 gene The YP2 protein shows h... 197 2e-56
(P01123) RecName: Full=GTP-binding protein YPT1; AltName: Full=R... 197 2e-56
D01027_1(D01027|pid:none) Arabidopsis thaliana mRNA for small GT... 206 4e-56
CR380957_540(CR380957|pid:none) Candida glabrata strain CBS138 c... 196 5e-56
Z73931_1(Z73931|pid:none) L.japonicus mRNA for small GTP-binding... 204 5e-56
AF542024_1(AF542024|pid:none) Griffithsia japonica GTP-binding p... 187 4e-55
FN320591_1(FN320591|pid:none) Schistosoma japonicum isolate Anhu... 192 5e-55
AY223134_1(AY223134|pid:none) Schistosoma japonicum SJCHGC02833 ... 192 7e-55
DQ222937_1(DQ222937|pid:none) Chlamydomonas incerta YptC1 (yptC1... 213 1e-53
BC103436_1(BC103436|pid:none) Bos taurus RAB1A, member RAS oncog... 185 4e-53
FN315276_1(FN315276|pid:none) Schistosoma japonicum isolate Anhu... 185 8e-53
AC183498_22(AC183498|pid:none) Brassica oleracea, *** SEQUENCING... 188 1e-52
AB241241_1(AB241241|pid:none) Symbiotic protist of Reticuliterme... 198 2e-52
AB241242_1(AB241242|pid:none) Symbiotic protist of Reticuliterme... 197 3e-52
(P20790) RecName: Full=Ras-related protein Rab-8A; AltName: Full... 188 6e-52
FN357538_13(FN357538|pid:none) Schistosoma mansoni genome sequen... 187 2e-51
AM910992_200(AM910992|pid:none) Plasmodium knowlesi strain H chr... 180 5e-51
(P20791) RecName: Full=Ras-related protein Rab-8B; AltName: Full... 187 7e-51
AB054578_1(AB054578|pid:none) Entamoeba histolytica EhRab1A mRNA... 179 2e-50
AC183495_42(AC183495|pid:none) Brassica oleracea Contig A, compl... 202 3e-50
(O76173) RecName: Full=Ras-related protein Rab-1C; &AB015237_1(... 180 1e-49
DQ393575_1(DQ393575|pid:none) Metarhizium anisopliae RAB/GTPase ... 182 1e-49
AB241243_1(AB241243|pid:none) Symbiotic protist of Reticuliterme... 187 1e-49
AJ272025_1(AJ272025|pid:none) Colletotrichum lindemuthianum pt1 ... 181 4e-49
AB241230_1(AB241230|pid:none) Dinenympha exilis RsSmRab1_2 mRNA ... 187 5e-49
AB241220_1(AB241220|pid:none) Pyrsonympha grandis RsSmRab1_1 mRN... 185 2e-48
AL162751_30(AL162751|pid:none) Arabidopsis thaliana DNA chromoso... 172 5e-48
BT035355_1(BT035355|pid:none) Zea mays full-length cDNA clone ZM... 174 6e-48
AJ278658_1(AJ278658|pid:none) Aspergillus niger srgA gene for a ... 175 1e-47
AY087058_1(AY087058|pid:none) Arabidopsis thaliana clone 3115 mR... 171 2e-47
AK104346_1(AK104346|pid:none) Oryza sativa Japonica Group cDNA c... 174 2e-47
GN105821_1(GN105821|pid:none) Sequence 10602 from Patent WO20090... 171 2e-47
BT070243_1(BT070243|pid:none) Picea sitchensis clone WS02711_M12... 171 3e-47
GN106091_1(GN106091|pid:none) Sequence 10872 from Patent WO20090... 172 3e-47
S57478(S57478) GTP-binding protein GTP13 - garden pea &Z49902_1... 172 3e-47
GN106033_1(GN106033|pid:none) Sequence 10814 from Patent WO20090... 172 3e-47
AY576526_1(AY576526|pid:none) Oryza sativa (japonica cultivar-gr... 172 3e-47
AC117265_12(AC117265|pid:none) Oryza sativa (japonica cultivar-g... 171 5e-47
AF096249_1(AF096249|pid:none) Lycopersicon esculentum ethylene-r... 171 5e-47
AB079020_1(AB079020|pid:none) Nicotiana tabacum mRNA for ras-rel... 171 5e-47
AC125368_16(AC125368|pid:none) Medicago truncatula clone mth2-13... 171 5e-47
GM977117_1(GM977117|pid:none) Sequence 25 from Patent WO20081456... 171 5e-47
CR932686_1(CR932686|pid:none) Paramecium tetraurelia, Small GTPa... 176 5e-47
AY896243_1(AY896243|pid:none) Trichomonas vaginalis strain G3 sm... 176 5e-47
(Q54E92) RecName: Full=Ras-related protein RabG1; 186 5e-47
(Q92930) RecName: Full=Ras-related protein Rab-8B; &AB038995_1(... 170 7e-47
AB112933_1(AB112933|pid:none) Drosophila melanogaster rab8 mRNA ... 170 7e-47
BC142846_1(BC142846|pid:none) Danio rerio RAB8B, member RAS onco... 170 9e-47
BC134059_1(BC134059|pid:none) Danio rerio RAB8A, member RAS onco... 170 9e-47
GM977153_1(GM977153|pid:none) Sequence 61 from Patent WO20081456... 170 1e-46
EF144772_1(EF144772|pid:none) Populus trichocarpa clone WS01118_... 170 1e-46
(P22128) RecName: Full=Ras-related protein Rab-8; AltName: Full=... 169 1e-46
GN106051_1(GN106051|pid:none) Sequence 10832 from Patent WO20090... 169 2e-46
AE017343_437(AE017343|pid:none) Cryptococcus neoformans var. neo... 171 2e-46
AB015475_6(AB015475|pid:none) Arabidopsis thaliana genomic DNA, ... 169 2e-46
BC127330_1(BC127330|pid:none) Xenopus tropicalis RAB8B, member R... 169 2e-46
BC135798_1(BC135798|pid:none) Xenopus tropicalis RAB8B, member R... 169 2e-46
S33900(S33900;JQ2233) GTP-binding protein ypt2 - tomato &X69980... 170 3e-46
GN106127_1(GN106127|pid:none) Sequence 10908 from Patent WO20090... 170 3e-46
AJ001367_1(AJ001367|pid:none) Daucus carota mRNA for Rab8-like s... 169 3e-46
AB079024_1(AB079024|pid:none) Nicotiana tabacum mRNA for ras-rel... 169 3e-46
GN106049_1(GN106049|pid:none) Sequence 10830 from Patent WO20090... 169 3e-46
Z73946_1(Z73946|pid:none) L.japonicus mRNA for small GTP-binding... 169 3e-46
BT080552_1(BT080552|pid:none) Caligus clemensi clone ccle-evs-51... 168 3e-46
BT070448_1(BT070448|pid:none) Picea sitchensis clone WS0272_O15 ... 169 3e-46
GN106009_1(GN106009|pid:none) Sequence 10790 from Patent WO20090... 168 3e-46
GN106021_1(GN106021|pid:none) Sequence 10802 from Patent WO20090... 168 3e-46
BT081291_1(BT081291|pid:none) Caligus clemensi clone ccle-evs-51... 168 3e-46
(Q2HJI8) RecName: Full=Ras-related protein Rab-8B; &BC105330_1(... 167 4e-46
BC078493_1(BC078493|pid:none) Xenopus laevis MGC85265 protein, m... 167 4e-46
GM977141_1(GM977141|pid:none) Sequence 49 from Patent WO20081456... 167 6e-46
GM977111_1(GM977111|pid:none) Sequence 19 from Patent WO20081456... 169 7e-46
S51495(S51495;S70850)GTP-binding protein RYL1 - yeast (Yarrowia ... 170 8e-46
AL117202_29(AL117202|pid:none) Caenorhabditis elegans YAC Y47D3A... 168 9e-46
S57474(S57474) GTP-binding protein - garden pea &Z49899_1(Z4989... 172 1e-45
T33855(T33855)hypothetical protein D1037.4 - Caenorhabditis eleg... 166 1e-45
GN105943_1(GN105943|pid:none) Sequence 10724 from Patent WO20090... 166 1e-45
GN106011_1(GN106011|pid:none) Sequence 10792 from Patent WO20090... 166 1e-45
AB112929_1(AB112929|pid:none) Caenorhabditis elegans rab8 mRNA f... 166 1e-45
AY324134_1(AY324134|pid:none) Babesia bovis Rab1a mRNA, complete... 161 2e-45
CR954205_238(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 169 2e-45
CR932696_1(CR932696|pid:none) Paramecium tetraurelia, Small GTPa... 172 2e-45
BC071442_1(BC071442|pid:none) Danio rerio zgc:86773, mRNA (cDNA ... 152 2e-45
AB018117_6(AB018117|pid:none) Arabidopsis thaliana genomic DNA, ... 186 2e-45
(P35280) RecName: Full=Ras-related protein Rab-8A; &(P55258) Re... 165 2e-45
AK147178_1(AK147178|pid:none) Mus musculus 17 days pregnant adul... 165 2e-45
CR933412_1(CR933412|pid:none) Paramecium tetraurelia, Small GTPa... 166 3e-45
(Q5KTJ6) RecName: Full=Ras-related protein Rab-13; &AB158369_1(... 167 3e-45
BX538352_67(BX538352|pid:none) Cryptosporidium parvum chromosome... 164 4e-45
(Q9DD03) RecName: Full=Ras-related protein Rab-13; &AK002303_1(... 166 4e-45
AY232027_1(AY232027|pid:none) Drosophila yakuba clone yak-ad_Rab... 150 5e-45
CR933446_1(CR933446|pid:none) Paramecium tetraurelia, Small GTPa... 166 5e-45
CR932639_1(CR932639|pid:none) Paramecium tetraurelia, Small GTPa... 170 6e-45
AY892042_1(AY892042|pid:none) Synthetic construct Homo sapiens c... 164 6e-45
B38625(B38625)GTP-binding protein ora2 - electric ray (Discopyge... 163 8e-45
(Q58DS5) RecName: Full=Ras-related protein Rab-13; &BT021522_1(... 165 8e-45
BC094846_1(BC094846|pid:none) Homo sapiens RAB13, member RAS onc... 165 1e-44
BT080187_1(BT080187|pid:none) Caligus clemensi clone ccle-evs-50... 164 1e-44
AY893729_1(AY893729|pid:none) Synthetic construct Homo sapiens c... 165 1e-44
(P51153) RecName: Full=Ras-related protein Rab-13; AltName: Full... 165 1e-44
DQ414573_1(DQ414573|pid:none) Suberites domuncula Rab35 gene, co... 166 1e-44
BC129421_1(BC129421|pid:none) Danio rerio zgc:158741, mRNA (cDNA... 163 1e-44
AB232608_1(AB232608|pid:none) Mus musculus mRNA for Rab13, compl... 164 1e-44
EU069501_1(EU069501|pid:none) Gymnochlora stellata Rab1A1 mRNA, ... 157 2e-44
S53268_1(S53268|pid:none) Homo sapiens RAS-related protein MEL (... 162 2e-44
I78851(I78851) GTP-binding protein MEL - mouse &S53270_1(S53270... 162 2e-44
AK297598_1(AK297598|pid:none) Homo sapiens cDNA FLJ52970 complet... 162 2e-44
BC060015_1(BC060015|pid:none) Xenopus laevis hypothetical protei... 164 3e-44
(P34141) RecName: Full=Ras-related protein RabA; 167 4e-44
CR859178_1(CR859178|pid:none) Pongo abelii mRNA; cDNA DKFZp459K2... 164 5e-44
(P61026) RecName: Full=Ras-related protein Rab-10; &(P61027) Re... 164 5e-44
AK008725_1(AK008725|pid:none) Mus musculus adult male stomach cD... 164 5e-44
L21011_1(L21011|pid:none) Dictyostelium discoideum RabA mRNA, 3'... 164 8e-44
AL136650_1(AL136650|pid:none) Homo sapiens mRNA; cDNA DKFZp564L1... 163 9e-44
BT044760_1(BT044760|pid:none) Salmo salar clone ssal-rgf-502-322... 162 1e-43
(P24409) RecName: Full=Ras-related protein Rab-10; &D36364(D363... 162 1e-43
(Q5R4A3) RecName: Full=Ras-related protein Rab-8A; &CR861352_1(... 159 2e-43
(Q9TVU5) RecName: Full=Ras-related protein Rab-1; AltName: Full=... 158 2e-43
AM910992_188(AM910992|pid:none) Plasmodium knowlesi strain H chr... 155 3e-43
AY893660_1(AY893660|pid:none) Synthetic construct Homo sapiens c... 161 4e-43
DQ414563_1(DQ414563|pid:none) Suberites domuncula Rab10 gene, co... 160 7e-43
DQ440351_1(DQ440351|pid:none) Aedes aegypti clone AET-452 RAB pr... 160 7e-43
BT076103_1(BT076103|pid:none) Caligus rogercresseyi clone crog-e... 160 7e-43
BC077124_1(BC077124|pid:none) Danio rerio zgc:100812, mRNA (cDNA... 160 9e-43
DQ443136_1(DQ443136|pid:none) Bombyx mori small GTP binding prot... 163 1e-42
EU244427_1(EU244427|pid:none) Capra hircus RAB1A-like protein mR... 141 2e-42
AY231907_1(AY231907|pid:none) Drosophila yakuba clone yak-em_Rab... 141 2e-42
(P22127) RecName: Full=Ras-related protein Rab-10; Shor... 159 2e-42
BC009227_1(BC009227|pid:none) Homo sapiens RAB13, member RAS onc... 165 2e-42
AJ237914_1(AJ237914|pid:none) Plasmodium falciparum putative rab... 152 3e-42
AF201953_1(AF201953|pid:none) Plasmodium falciparum isolate FCC1... 152 3e-42
EU960755_1(EU960755|pid:none) Zea mays clone 228324 unknown mRNA. 145 3e-42
AP008213_447(AP008213|pid:none) Oryza sativa (japonica cultivar-... 174 5e-42
BC124978_1(BC124978|pid:none) Xenopus laevis hypothetical protei... 156 5e-42
EF125738_1(EF125738|pid:none) Nyctotherus ovalis Rab A61 gene, c... 155 6e-42
AJ851375_1(AJ851375|pid:none) Gallus gallus mRNA for hypothetica... 157 6e-42
U41269_1(U41269|pid:none) Plasmodium falciparum Rab1 protein (Pf... 151 7e-42
AB006189_1(AB006189|pid:none) Drosophila melanogaster mRNA for R... 156 8e-42
BC099268_1(BC099268|pid:none) Xenopus laevis similar to RAB35, m... 156 1e-41
BC068969_1(BC068969|pid:none) Xenopus laevis similar to RAB35, m... 156 1e-41
BC041759_1(BC041759|pid:none) Xenopus laevis similar to RAB35, m... 156 1e-41
BC061274_1(BC061274|pid:none) Xenopus tropicalis hypothetical pr... 156 1e-41
DQ286060_1(DQ286060|pid:none) Hydra vulgaris RAS related GTP-bin... 151 3e-41
BC057747_1(BC057747|pid:none) Xenopus laevis hypothetical protei... 154 3e-41
FN357316_32(FN357316|pid:none) Schistosoma mansoni genome sequen... 155 5e-41
Z73945_1(Z73945|pid:none) L.japonicus mRNA for small GTP-binding... 171 7e-41
(P35281) RecName: Full=Ras-related protein Rab-10; &M83677_1(M8... 152 1e-40
AY439005_1(AY439005|pid:none) Fucus distichus Rab family GTPase ... 159 3e-40
FN359283_3(FN359283|pid:none) Schistosoma mansoni genome sequenc... 159 3e-40
CR932630_1(CR932630|pid:none) Paramecium tetraurelia, Small GTPa... 149 4e-40
CR932581_1(CR932581|pid:none) Paramecium tetraurelia, Small GTPa... 156 4e-40
FN314406_1(FN314406|pid:none) Schistosoma japonicum isolate Anhu... 150 4e-40
FN314407_1(FN314407|pid:none) Schistosoma japonicum isolate Anhu... 150 4e-40
(Q39570) RecName: Full=GTP-binding protein YPTC4; &JC4106(JC410... 154 4e-40
T28971(T28971) hypothetical protein T23H2.5 - Caenorhabditis ele... 150 4e-40
AF389109_1(AF389109|pid:none) Entamoeba histolytica small GTP-bi... 159 9e-40
(Q558I0) RecName: Full=Ras-related protein RabF1; 156 9e-40
AY815772_1(AY815772|pid:none) Schistosoma japonicum SJCHGC09130 ... 148 2e-39
(P07560) RecName: Full=Ras-related protein SEC4; AltName: Full=S... 151 3e-39
AY220456_1(AY220456|pid:none) Limulus polyphemus rab11-2 mRNA, c... 147 4e-39
AY815506_1(AY815506|pid:none) Schistosoma japonicum SJCHGC02859 ... 146 5e-39
BT078096_1(BT078096|pid:none) Lepeophtheirus salmonis Pacific fo... 148 6e-39
AE014296_1491(AE014296|pid:none) Drosophila melanogaster chromos... 152 6e-39
AC139707_26(AC139707|pid:none) Medicago truncatula clone mth2-16... 150 6e-39
AF127669_1(AF127669|pid:none) Mus musculus small GTPase (Rab11a)... 146 8e-39
BC081187_1(BC081187|pid:none) Xenopus laevis MGC84419 protein, m... 146 8e-39
BT051484_1(BT051484|pid:none) Medicago truncatula clone MTYF1_F2... 144 8e-39
AB035354_1(AB035354|pid:none) Drosophila melanogaster mRNA for D... 145 1e-38
BT001785_1(BT001785|pid:none) Drosophila melanogaster RH21315 fu... 145 1e-38
BT056265_1(BT056265|pid:none) Drosophila melanogaster FI09227 fu... 145 1e-38
(O14462) RecName: Full=Ras-related protein SEC4; &AF015306_1(AF... 148 1e-38
(P22129) RecName: Full=Ras-related protein Rab-11B; AltName: Ful... 145 1e-38
CR382138_325(CR382138|pid:none) Debaryomyces hansenii strain CBS... 148 1e-38
CP000499_197(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 147 2e-38
AY813938_1(AY813938|pid:none) Schistosoma japonicum SJCHGC06150 ... 145 2e-38
CR932504_1(CR932504|pid:none) Paramecium tetraurelia, Small GTPa... 147 2e-38
BT077510_1(BT077510|pid:none) Lepeophtheirus salmonis Pacific fo... 145 2e-38
BT045814_1(BT045814|pid:none) Salmo salar clone ssal-rgf-532-060... 144 2e-38
CR932510_1(CR932510|pid:none) Paramecium tetraurelia, Small GTPa... 152 2e-38
EF366951_1(EF366951|pid:none) Phytophthora infestans isolate B04... 162 3e-38
AC116984_79(AC116984|pid:none) Dictyostelium discoideum chromoso... 156 3e-38
AJ851582_1(AJ851582|pid:none) Gallus gallus mRNA for hypothetica... 144 3e-38
BC082421_1(BC082421|pid:none) Xenopus laevis hypothetical LOC494... 144 3e-38
BC076437_1(BC076437|pid:none) Danio rerio RAB30, member RAS onco... 145 3e-38
DQ414564_1(DQ414564|pid:none) Suberites domuncula Rab11 gene, co... 145 4e-38
(Q2TA29) RecName: Full=Ras-related protein Rab-11A; &BC111143_1... 144 4e-38
EU244432_1(EU244432|pid:none) Capra hircus RAB11B (rab11b) mRNA,... 143 5e-38
AY894025_1(AY894025|pid:none) Synthetic construct Homo sapiens c... 143 5e-38
EF560724_1(EF560724|pid:none) Homo sapiens clone DKFZp564C1023 R... 143 5e-38
(P46638) RecName: Full=Ras-related protein Rab-11B; &A55005(A55... 143 5e-38
CR541691_1(CR541691|pid:none) Homo sapiens full open reading fra... 143 5e-38
(O35509) RecName: Full=Ras-related protein Rab-11B; &(Q15907) R... 143 5e-38
D42148(D42148) GTP-binding protein rab13 - rat (fragment) &M836... 161 6e-38
JC2487(JC2487) GTP-binding protein H-YPT3 - human &X79780_1(X79... 143 7e-38
EF145933_1(EF145933|pid:none) Populus trichocarpa clone WS0114_G... 143 7e-38
CR382125_525(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 147 7e-38
BC048889_1(BC048889|pid:none) Danio rerio RAB11B, member RAS onc... 144 8e-38
BC087498_1(BC087498|pid:none) Xenopus laevis hypothetical LOC496... 142 8e-38
BC075268_1(BC075268|pid:none) Xenopus tropicalis RAB11B, member ... 142 8e-38
BC041250_1(BC041250|pid:none) Xenopus laevis RAB11B, member RAS ... 142 8e-38
Z73937_1(Z73937|pid:none) L.japonicus mRNA for small GTP-binding... 146 9e-38
AL161545_37(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 146 9e-38
(P36409) RecName: Full=Ras-related protein Rab-2A; 147 9e-38
E71440(E71440)GTP-binding protein RAB2A - Arabidopsis thaliana 146 9e-38
DQ836048_1(DQ836048|pid:none) Trichomonas vaginalis small Rab GT... 145 9e-38
BC152630_1(BC152630|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 144 1e-37
BC076247_1(BC076247|pid:none) Danio rerio zgc:92772, mRNA (cDNA ... 144 1e-37
CR536494_1(CR536494|pid:none) Homo sapiens full open reading fra... 142 1e-37
AY220749_1(AY220749|pid:none) Limulus polyphemus Rab11-1a mRNA, ... 142 1e-37
EF678326_1(EF678326|pid:none) Picea sitchensis clone WS02914_M23... 142 1e-37
AC161399_25(AC161399|pid:none) Medicago truncatula chromosome 2 ... 146 1e-37
BC097569_1(BC097569|pid:none) Xenopus laevis hypothetical protei... 145 1e-37
CP000582_359(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 144 1e-37
L35845_1(L35845|pid:none) Oryza sativa small GTP-binding protein... 145 1e-37
AM471469_2(AM471469|pid:none) Vitis vinifera contig VV78X014719.... 143 1e-37
(A4D1S5) RecName: Full=Ras-related protein Rab-19; &BC140796_1(... 144 1e-37
BT049157_1(BT049157|pid:none) Salmo salar clone ssal-rgb2-591-24... 143 1e-37
AY220748_1(AY220748|pid:none) Limulus polyphemus Rab11-1c mRNA, ... 142 1e-37
S71559(S71559) GTP-binding protein rab2 - soybean &U32185_1(U32... 145 1e-37
(P49103) RecName: Full=Ras-related protein Rab-2-A; &T02242(T02... 145 1e-37
CR932514_1(CR932514|pid:none) Paramecium tetraurelia, Small GTPa... 146 2e-37
(Q39572) RecName: Full=Ras-related protein YPTC6; &JC4108(JC410... 142 2e-37
EU954271_1(EU954271|pid:none) Zea mays clone 1460642 ras-related... 141 2e-37
BC055141_1(BC055141|pid:none) Danio rerio zgc:63565, mRNA (cDNA ... 141 2e-37
EU069500_1(EU069500|pid:none) Karlodinium micrum Rab1D mRNA, com... 149 2e-37
AF014120_1(AF014120|pid:none) Strongylocentrotus purpuratus GTP-... 149 2e-37
AY904354_1(AY904354|pid:none) Gracilariopsis lemaneiformis small... 147 2e-37
AK051218_1(AK051218|pid:none) Mus musculus 12 days embryo spinal... 138 2e-37
DQ157704_1(DQ157704|pid:none) Aiptasia pulchella Rab11 protein m... 140 3e-37
AC084818_20(AC084818|pid:none) Oryza sativa (japonica cultivar-g... 140 3e-37
AF003139_1(AF003139|pid:none) Caenorhabditis elegans cosmid F53G... 140 3e-37
AY896281_1(AY896281|pid:none) Trichomonas vaginalis strain G3 sm... 144 3e-37
AK297498_1(AK297498|pid:none) Homo sapiens cDNA FLJ61134 complet... 140 4e-37
AB028161_1(AB028161|pid:none) Giardia intestinalis GlRabA mRNA f... 158 5e-37
AC140549_17(AC140549|pid:none) Medicago truncatula clone mth2-28... 140 5e-37
AC124143_12(AC124143|pid:none) Oryza sativa (japonica cultivar-g... 141 5e-37
CR954202_213(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 141 5e-37
DQ525204_1(DQ525204|pid:none) Bombyx mori ras-related GTP-bindin... 147 7e-37
L49400_1(L49400|pid:none) Loligo pealii Rab3 gene, complete cds. 147 7e-37
AJ518934_1(AJ518934|pid:none) Hordeum vulgare subsp. vulgare mRN... 143 7e-37
AM462529_1(AM462529|pid:none) Vitis vinifera contig VV78X101776.... 140 7e-37
AL021710_9(AL021710|pid:none) Arabidopsis thaliana DNA chromosom... 139 7e-37
(P49104) RecName: Full=Ras-related protein Rab-2-B; &BT068076_1... 143 7e-37
DQ397202_1(DQ397202|pid:none) Saccharum officinarum small GTP bi... 143 7e-37
(Q504M8) RecName: Full=Ras-related protein Rab-26; &AB232621_1(... 144 9e-37
GN105993_1(GN105993|pid:none) Sequence 10774 from Patent WO20090... 139 9e-37
(Q86YS6) RecName: Full=Ras-related protein Rab-43; AltName: Full... 142 9e-37
AL161545_36(AL161545|pid:none) Arabidopsis thaliana DNA chromoso... 145 9e-37
BC071068_1(BC071068|pid:none) Xenopus laevis MGC78967 protein, m... 142 1e-36
(Q39222) RecName: Full=Ras-related protein RABA1b; AltName: Full... 140 1e-36
AB015472_10(AB015472|pid:none) Arabidopsis thaliana genomic DNA,... 139 1e-36
BC066913_1(BC066913|pid:none) Homo sapiens RAB26, member RAS onc... 143 2e-36
M19885_1(M19885|pid:none) Bovine GTP-binding protein (smg p25A) ... 147 2e-36
BT038097_1(BT038097|pid:none) Zea mays full-length cDNA clone ZM... 140 2e-36
(Q9ULW5) RecName: Full=Ras-related protein Rab-26; &AY646153_1(... 142 2e-36
(P11023) RecName: Full=Ras-related protein Rab-3A; AltName: Full... 147 2e-36
AF254795_1(AF254795|pid:none) Homo sapiens GTP-binding protein R... 147 2e-36
S01765(S01765;C39963) GTP-binding protein rab3 - rat &X06889_1(... 147 2e-36
(P25228) RecName: Full=Ras-related protein Rab-3; &AB112932_1(A... 146 2e-36
(Q01111) RecName: Full=Ras-related protein YPT3; &S23523(S23523... 137 2e-36
(Q3ZC27) RecName: Full=Ras-related protein Rab-19; &BC102961_1(... 140 2e-36
AY851657_1(AY851657|pid:none) Triticum aestivum small GTP-bindin... 142 2e-36
BC122421_1(BC122421|pid:none) Danio rerio zgc:153788, mRNA (cDNA... 144 2e-36
PDBN(3RAB)A MOL_ID: 1;MOL_ID: 1; MOLECULE: RAB3A; MOLECULE: RAB3... 147 2e-36
AY891536_1(AY891536|pid:none) Synthetic construct Homo sapiens c... 145 3e-36
BT064711_1(BT064711|pid:none) Zea mays full-length cDNA clone ZM... 139 3e-36
(Q9FK68) RecName: Full=Ras-related protein RABA1c; &AB012245_16... 137 3e-36
EU117168_1(EU117168|pid:none) Danio rerio Rab8 mRNA, partial cds. 135 3e-36
AK060095_1(AK060095|pid:none) Oryza sativa Japonica Group cDNA c... 139 3e-36
(O95716) RecName: Full=Ras-related protein Rab-3D; &AF081353_1(... 144 3e-36
AJ245570_1(AJ245570|pid:none) Lycopersicon esculentum mRNA for R... 136 3e-36
BT039216_1(BT039216|pid:none) Zea mays full-length cDNA clone ZM... 138 3e-36
AY084274_1(AY084274|pid:none) Arabidopsis thaliana clone 102017 ... 137 3e-36
EF144948_1(EF144948|pid:none) Populus trichocarpa clone WS0111_B... 137 3e-36
EF084887_1(EF084887|pid:none) Picea sitchensis clone WS0292_K24 ... 141 3e-36
JC5066(JC5066) GTP-binding protein rab 3C - rat &U54807_1(U5480... 145 4e-36
AM432734_2(AM432734|pid:none) Vitis vinifera contig VV78X219500.... 136 4e-36
(Q15771) RecName: Full=Ras-related protein Rab-30; &(Q17QB7) Re... 140 5e-36
CR932703_1(CR932703|pid:none) Paramecium tetraurelia, Small GTPa... 135 5e-36
AC011742_1(AC011742|pid:none) Homo sapiens BAC clone RP11-214J9 ... 155 5e-36
(Q40191) RecName: Full=Ras-related protein Rab11A; &Z73949_1(Z7... 144 6e-36
BC135626_1(BC135626|pid:none) Xenopus tropicalis RAB3A, member R... 145 6e-36
EU626442_7(EU626442|pid:none) Gossypium raimondii clone BAC 031J... 137 6e-36
AY632359_2(AY632359|pid:none) Gossypium hirsutum BAC 155C17, com... 137 6e-36
(Q40723) RecName: Full=Ras-related protein RGP2; AltName: Full=G... 138 6e-36
AF083256_1(AF083256|pid:none) Sporobolus stapfianus small GTP bi... 140 6e-36
AM269968_23(AM269968|pid:none) Aspergillus niger contig An01c021... 138 6e-36
AY809861_1(AY809861|pid:none) Schistosoma japonicum SJCHGC02927 ... 148 6e-36
AP008215_340(AP008215|pid:none) Oryza sativa (japonica cultivar-... 137 8e-36
(Q9CZT8) RecName: Full=Ras-related protein Rab-3B; &AB232588_1(... 144 8e-36
EU626443_5(EU626443|pid:none) Gossypioides kirkii clone BAC 096G... 137 8e-36
BT036850_1(BT036850|pid:none) Zea mays full-length cDNA clone ZM... 137 8e-36
GN106065_1(GN106065|pid:none) Sequence 10846 from Patent WO20090... 137 8e-36
BT069763_1(BT069763|pid:none) Zea mays full-length cDNA clone ZM... 137 8e-36
AK071461_1(AK071461|pid:none) Oryza sativa Japonica Group cDNA c... 137 8e-36
EU965206_1(EU965206|pid:none) Zea mays clone 284484 ras-related ... 137 8e-36
EF086736_1(EF086736|pid:none) Picea sitchensis clone WS02731_C01... 137 8e-36
EU162609_23(EU162609|pid:none) Cleome spinosa clone contig83 BAC... 135 8e-36
BT033192_1(BT033192|pid:none) Zea mays full-length cDNA clone ZM... 135 8e-36
EU952347_1(EU952347|pid:none) Zea mays clone 1278162 ras-related... 135 8e-36
FN357326_31(FN357326|pid:none) Schistosoma mansoni genome sequen... 150 8e-36
(Q63941) RecName: Full=Ras-related protein Rab-3B; &Y14019_1(Y1... 144 1e-35
GN080103_1(GN080103|pid:none) Sequence 706 from Patent WO2009027... 138 1e-35
GN106085_1(GN106085|pid:none) Sequence 10866 from Patent WO20090... 137 1e-35
(Q28IZ3) RecName: Full=Ras-related protein Rab-19; &CR760145_1(... 140 1e-35
AL670003_2(AL670003|pid:none) Neurospora crassa DNA linkage grou... 137 1e-35
AM920437_2206(AM920437|pid:none) Penicillium chrysogenum Wiscons... 137 1e-35
BC074609_1(BC074609|pid:none) Xenopus tropicalis RAB30, member R... 139 1e-35
CR933428_1(CR933428|pid:none) Paramecium tetraurelia, Small GTPa... 134 1e-35
CR932644_1(CR932644|pid:none) Paramecium tetraurelia, Small GTPa... 134 1e-35
EU958646_1(EU958646|pid:none) Zea mays clone 1707478 ras-related... 136 1e-35
AY690483_1(AY690483|pid:none) Triticum aestivum rab GTP-binding ... 136 1e-35
BT037150_1(BT037150|pid:none) Zea mays full-length cDNA clone ZM... 135 1e-35
AK071303_1(AK071303|pid:none) Oryza sativa Japonica Group cDNA c... 135 1e-35
DQ414558_1(DQ414558|pid:none) Suberites domuncula Rab2 gene, com... 139 1e-35
AE014298_1596(AE014298|pid:none) Drosophila melanogaster chromos... 135 1e-35
AF169950_1(AF169950|pid:none) Tetrahymena thermophila putative i... 138 1e-35
EZ000003_1(EZ000003|pid:none) TSA: Schistosoma japonicum SJCHGC0... 143 2e-35
(Q96E17) RecName: Full=Ras-related protein Rab-3C; &AY026936_1(... 143 2e-35
(Q96AX2) RecName: Full=Ras-related protein Rab-37; &AK098068_1(... 142 2e-35
AY223137_1(AY223137|pid:none) Schistosoma japonicum clone ZZD146... 143 2e-35
BT035344_1(BT035344|pid:none) Zea mays full-length cDNA clone ZM... 136 2e-35
(Q39434) RecName: Full=Ras-related protein Rab2BV; &T14566(T145... 134 2e-35
BT037824_1(BT037824|pid:none) Zea mays full-length cDNA clone ZM... 139 2e-35
U28944_14(U28944|pid:none) Caenorhabditis elegans cosmid C18A3, ... 142 2e-35
AK313538_1(AK313538|pid:none) Homo sapiens cDNA, FLJ94098, highl... 144 2e-35
U00986_1(U00986|pid:none) Aplysia californica Rab3 mRNA, complet... 142 2e-35
(Q94986) RecName: Full=Ras-related protein Rab-3; &AB112928_1(A... 142 2e-35
AY815497_1(AY815497|pid:none) Schistosoma japonicum SJCHGC05511 ... 142 2e-35
BT076392_1(BT076392|pid:none) Caligus rogercresseyi clone crog-e... 138 2e-35
BT077989_1(BT077989|pid:none) Lepeophtheirus salmonis Pacific fo... 138 2e-35
CR933476_1(CR933476|pid:none) Paramecium tetraurelia, Small GTPa... 135 2e-35
CR932579_1(CR932579|pid:none) Paramecium tetraurelia, Small GTPa... 136 3e-35
AC130603_13(AC130603|pid:none) Oryza sativa (japonica cultivar-g... 135 3e-35
AF468652_1(AF468652|pid:none) Homo sapiens RAB2B mRNA, complete ... 138 3e-35
(Q05975) RecName: Full=Ras-related protein Rab-2; &S38341(S3834... 138 3e-35
EF710656_1(EF710656|pid:none) Glyptapanteles indiensis clone BAC... 138 3e-35
AJ308736_1(AJ308736|pid:none) Plasmodium falciparum mRNA for put... 136 3e-35
DQ019037_1(DQ019037|pid:none) Trichomonas vaginalis strain G3 sm... 141 3e-35
EF457937_1(EF457937|pid:none) Lolium temulentum GTP-binding prot... 138 3e-35
BX647601_1(BX647601|pid:none) Homo sapiens mRNA; cDNA DKFZp313C1... 138 3e-35
CR932657_1(CR932657|pid:none) Paramecium tetraurelia, Small GTPa... 131 3e-35
U68256_1(U68256|pid:none) Caenorhabditis elegans rab8-like mRNA,... 131 3e-35
FN357465_14(FN357465|pid:none) Schistosoma mansoni genome sequen... 142 4e-35
AC012679_5(AC012679|pid:none) Arabidopsis thaliana chromosome 1 ... 140 4e-35
BX510928_2(BX510928|pid:none) Zebrafish DNA sequence from clone ... 142 4e-35
AC155344_30(AC155344|pid:none) Brassica rapa subsp. pekinensis c... 138 4e-35
AF532625_1(AF532625|pid:none) Glycine max GTP-binding protein mR... 135 4e-35
BC108532_1(BC108532|pid:none) Xenopus laevis hypothetical protei... 138 4e-35
AE013599_198(AE013599|pid:none) Drosophila melanogaster chromoso... 137 4e-35
AB035352_1(AB035352|pid:none) Drosophila melanogaster mRNA for D... 137 4e-35
U37099_1(U37099|pid:none) Rattus norvegicus small GTP-binding pr... 142 4e-35
AX885835_1(AX885835|pid:none) Sequence 1698 from Patent EP1033401. 131 4e-35
EF085830_1(EF085830|pid:none) Picea sitchensis clone WS0286_P20 ... 139 5e-35
AF532626_1(AF532626|pid:none) Glycine max small GTP-binding prot... 132 5e-35
(P35294) RecName: Full=Ras-related protein Rab-19; &AB232613_1(... 137 5e-35
GN106045_1(GN106045|pid:none) Sequence 10826 from Patent WO20090... 134 5e-35
CR932553_1(CR932553|pid:none) Paramecium tetraurelia, Small GTPa... 139 5e-35
(Q53B90) RecName: Full=Ras-related protein Rab-43; &AY593256_1(... 137 5e-35
U02926_1(U02926|pid:none) Dictyostelium discoideum Ax3 Rab2 mRNA... 147 5e-35
U18771_1(U18771|pid:none) Rattus norvegicus Rab26 mRNA, complete... 147 5e-35
BC054719_1(BC054719|pid:none) Mus musculus RAB2B, member RAS onc... 137 6e-35
CR548612_89(CR548612|pid:none) Paramecium tetraurelia macronucle... 138 6e-35
EF083999_1(EF083999|pid:none) Picea sitchensis clone WS0281_E05 ... 142 6e-35
BC075980_1(BC075980|pid:none) Danio rerio RAB3A, member RAS onco... 142 6e-35
(P20337) RecName: Full=Ras-related protein Rab-3B; &AF498932_1(... 141 6e-35
BC107443_1(BC107443|pid:none) Rattus norvegicus RAB2B, member RA... 137 6e-35
(P59279) RecName: Full=Ras-related protein Rab-2B; &AB232586_1(... 137 6e-35
AC093018_9(AC093018|pid:none) Oryza sativa chromosome 3 BAC OSJN... 132 6e-35
(P61019) RecName: Full=Ras-related protein Rab-2A; &(P61105) Re... 137 6e-35
(Q90965) RecName: Full=Ras-related protein Rab-2A; &S52325(S523... 137 6e-35
BT043649_1(BT043649|pid:none) Salmo salar clone HM5_0924 RAB2A, ... 137 6e-35

>(P34140) RecName: Full=Ras-related protein Rab-1B;
Length = 206

Score = 339 bits (870), Expect(3) = e-101
Identities = 169/169 (100%), Positives = 169/169 (100%)
Frame = +3

Query: 993 ISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFN 1172
ISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFN
Sbjct: 38 ISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFN 97

Query: 1173 NVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSAN 1352
NVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSAN
Sbjct: 98 NVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSAN 157

Query: 1353 VEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKCSII 1499
VEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKCSII
Sbjct: 158 VEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKCSII 206

Score = 48.1 bits (113), Expect(3) = e-101
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1

Query: 886 PEYDYLFKLLLIGDSGVGKSC 948
PEYDYLFKLLLIGDSGVGKSC
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSC 23

Score = 29.3 bits (64), Expect(3) = e-101
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2

Query: 956 LRFADDTYTESY 991
LRFADDTYTESY
Sbjct: 26 LRFADDTYTESY 37

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,307,372,416
Number of extensions: 43506002
Number of successful extensions: 112839
Number of sequences better than 10.0: 4149
Number of HSP's gapped: 111198
Number of HSP's successfully gapped: 6745
Length of query: 545
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 411
Effective length of database: 617,481,958
Effective search space: 253785084738
Effective search space used: 253785084738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.35 gvh: 0.56 alm: 0.27 top: 0.10 tms: 0.07 mit: 0.39 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.44 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: Golgi
12.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for Contig-U12243-1 is mit

VS (DIR, S) 2
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 16
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0